RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4661
(59 letters)
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 69.3 bits (170), Expect = 3e-16
Identities = 29/46 (63%), Positives = 39/46 (84%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
VFF+AGVLG +EE+RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 805
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 66.9 bits (164), Expect = 2e-15
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 52
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 62.4 bits (152), Expect = 8e-14
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE-----QRYC 56
+FFRAG + +E++R D+L +Q +RG+L RK+Y +++ QRY
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYV 801
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 58.5 bits (142), Expect = 2e-12
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 9 VFFRAGVLGQMEELRDDRLGK--IVGWMQSYMRGYLSRKEYKKIQEQR 54
+FFRAGVL Q+EE R K + ++ ++ + ++
Sbjct: 740 IFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFG 787
Score = 25.8 bits (57), Expect = 0.86
Identities = 3/36 (8%), Positives = 13/36 (36%)
Query: 18 QMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+ ++ G+ V +++ ++ K +
Sbjct: 802 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPF 837
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 58.3 bits (141), Expect = 2e-12
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
+FFR GVL +EE RD ++ ++ Q+ RGYL+RK + K Q+Q
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQL 818
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 56.2 bits (136), Expect = 1e-11
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRY 55
+FFRAG L ++EE R+ RLG R + Q
Sbjct: 744 IFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLE 790
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 45.3 bits (108), Expect = 9e-08
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYL 42
VFFR G + +++ + ++ + +L
Sbjct: 752 VFFRPGKFAEFDQIMKSDPDHLAELVKR-VNHWL 784
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 42.5 bits (100), Expect = 1e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 23 RDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQRYC 56
RD+RL KI+ Q+++RGYL RK YKK+Q+QR
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIG 34
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 41.5 bits (98), Expect = 2e-06
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 9 VFFRAGVLGQMEELRDDRLGK 29
VFF+AG+LG +EE+RD+RL +
Sbjct: 763 VFFKAGLLGLLEEMRDERLSR 783
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 38.9 bits (91), Expect = 2e-06
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 26 RLGKIVGWMQSYMRGYLSRKEYKKIQEQRYC 56
R+G+IV +Q+ RG++ RK +++ +E+
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVS 32
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 9 VFFRAGVLGQMEELRDDRLGKIV 31
+FFRAG L ++EE R+ R
Sbjct: 744 IFFRAGQLARIEEARELRGDYKD 766
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 33.7 bits (78), Expect = 0.001
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 9 VFFR-AGVLGQMEELRDDRL 27
VF R L EE R+ +
Sbjct: 677 VFIRNPTTLFYFEEKRELEM 696
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ
motif, acetylation; 2.5A {Mus musculus}
Length = 58
Score = 27.5 bits (62), Expect = 0.077
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 34 MQSYMRGYLSRKEYKKIQEQR 54
+Q Y+RGY +R K ++ +
Sbjct: 34 VQRYVRGYQARCYAKFLRRTK 54
Score = 25.6 bits (57), Expect = 0.39
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 25 DRLGKIVGWMQSYMRGYLSRKEYKKIQE-----QRYC 56
D+L +Q +RG+L RK Y +Q QRY
Sbjct: 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYV 38
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 26.0 bits (58), Expect = 0.67
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 3 KWSHCTVFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
K++H V RA ++ L + R+ +G +R SR+E++ ++
Sbjct: 157 KYNHACVTRRA-----LDLLGEGRI-TSIG-----IRSV-SREEFEDPDFRK 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 2.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 34 MQSYMRGYLSRKEYKKIQEQR 54
+Q + LS++E I +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSK 58
>2x78_A Integrase; viral protein, DNA-directed DNA polyme
nucleotidyltransferase, DNA integration, aspartyl
protease, recombination, transferase; 2.00A {Human
spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Length = 200
Score = 23.8 bits (52), Expect = 3.4
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 2 VKWSHCTVFFRAGVLGQMEELRDD 25
R L ++E+R
Sbjct: 169 FANQDTLDLTREEELSLLQEIRTS 192
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate
assisted catalysis, subst channeling, adenylation; HET:
TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A
3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A*
3vez_A*
Length = 576
Score = 23.7 bits (51), Expect = 4.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 28 GKIVGWMQSYM 38
GK+VGW Q
Sbjct: 409 GKVVGWAQGRG 419
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 23.8 bits (52), Expect = 4.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 17/39 (43%)
Query: 15 VLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQ 53
+LG+M +L GY+S+ EY+K +
Sbjct: 198 ILGRMLQL-----------------GYISQAEYQKAVAE 219
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 23.4 bits (49), Expect = 5.3
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 30 IVGWMQSYMRGYLSRKEYKKIQE 52
+V W+ ++ G+ R+E +K
Sbjct: 44 VVDWLYHHVEGFPERREARKYAS 66
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II,
transcription, CTD, SET2 histone methyltransferase; NMR
{Saccharomyces cerevisiae}
Length = 104
Score = 22.7 bits (48), Expect = 8.5
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 19 MEELRDDRLGKIVGWMQSYMRGYLSRKEYKK 49
++L + K+ ++ SYM + +K+ KK
Sbjct: 68 PDDLTKGKRHKVKEFINSYMDKIILKKKQKK 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.452
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 988,578
Number of extensions: 41965
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 28
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)