RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4661
         (59 letters)



>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 62.0 bits (150), Expect = 4e-14
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 9   VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
           VFF+AG+LG +EE+RDD+L +I+   Q+  RG+L R EY+ + E+R
Sbjct: 716 VFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERR 761


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 61.3 bits (148), Expect = 8e-14
 Identities = 29/46 (63%), Positives = 39/46 (84%)

Query: 9   VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
           VFF+AGVLG +EE+RD+RL KI+   Q+++RGYL RK YKK+Q+QR
Sbjct: 712 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQR 757


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 59.0 bits (142), Expect = 4e-13
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 9   VFFRAGVLGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQ 51
           +FFRAG +  +E++R D+L      +Q  +RG+L RK+Y +++
Sbjct: 687 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 32.4 bits (73), Expect = 0.001
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 9   VFFRAGVLGQMEELRD 24
           +FFRAG L ++EE R+
Sbjct: 697 IFFRAGQLARIEEARE 712


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 31.6 bits (71), Expect = 0.002
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 9   VFFRAGVLGQMEELRD 24
           +FFR GVL  +EE RD
Sbjct: 695 IFFRTGVLAHLEEERD 710


>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
          {Thermus thermophilus, strain hb27 [TaxId: 274]}
          Length = 311

 Score = 25.1 bits (54), Expect = 0.44
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 16 LGQMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQE 52
          L +     + R+ ++ G     ++G L+  E   ++ 
Sbjct: 29 LMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRF 65


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 25.0 bits (54), Expect = 0.50
 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 1/16 (6%)

Query: 9   VFFR-AGVLGQMEELR 23
           VF R    L   EE R
Sbjct: 669 VFIRNPTTLFYFEEKR 684


>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 196

 Score = 23.0 bits (49), Expect = 2.7
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 2   VKWSH-CTVFFRAGVLGQ--MEELRDDRLGKIVGWMQSYMRGYLS 43
           V W      F   G L    +++     + +I  WM +Y+  +L 
Sbjct: 135 VNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLE 179


>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp.
          pcc 6803 [TaxId: 1148]}
          Length = 249

 Score = 21.9 bits (46), Expect = 5.8
 Identities = 4/25 (16%), Positives = 15/25 (60%)

Query: 31 VGWMQSYMRGYLSRKEYKKIQEQRY 55
            +M+ +++G + R+ ++++    Y
Sbjct: 21 TAYMKCFLKGIVEREPFRQLLANLY 45


>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia
           sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 162

 Score = 21.8 bits (46), Expect = 7.4
 Identities = 1/44 (2%), Positives = 9/44 (20%), Gaps = 3/44 (6%)

Query: 4   WSHCTVFFR-AGVLGQ--MEELRDDRLGKIVGWMQSYMRGYLSR 44
           W            + +      ++  +  +   +   +      
Sbjct: 96  WGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRD 139


>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 192

 Score = 21.8 bits (46), Expect = 7.7
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 2   VKWSHCTVFFR-AGVLGQ--MEELRDDRLGKIVGWMQSYMRGYLS 43
             W      F  A  L    +     + +  I+GW   ++R  L 
Sbjct: 105 FNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLL 149


>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 307

 Score = 21.6 bits (46), Expect = 9.2
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 18  QMEELRDDRLGKIVGWMQSYMRGYLSRKEYKKIQEQR 54
           Q+E++    L    G+    + G LS +++      R
Sbjct: 109 QLEDV-SQFLQTCTGFRLRPVAGLLSSRDFLGGLAFR 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 255,635
Number of extensions: 8642
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 16
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)