BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4663
(966 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/729 (52%), Positives = 503/729 (68%), Gaps = 35/729 (4%)
Query: 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 60
G+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q +
Sbjct: 328 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGM 387
Query: 61 ----SDSLQNYPRNGRDTGIRAYNRL--KRQQAIEKTNELSKTVDGWTSVDIGQCCNEFF 114
S SL R ++ R Y++ +Q AI+K NE+ K +DGW DIGQCCNEF
Sbjct: 388 EKICSKSLAK--RRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFI 445
Query: 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFF 174
E TL + +G K E R FLFDGL++ CK N + + G + EYRLKE+FF
Sbjct: 446 MEGTLTR--VGAKHE---RHIFLFDGLMICCKSNHGQPRLP-----GASNAEYRLKEKFF 495
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLD 234
+R+++I D D+++YK+AF+I+ + + VI A S E+KNNWMA LI L +S ER LD
Sbjct: 496 MRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLD 555
Query: 235 SILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEKDN-HTGVPLIKGATLYKLVERLTY 293
+L EEK+ +R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTY
Sbjct: 556 VTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTY 615
Query: 294 HIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLK 340
H+YADP FVRTFLTTYRSFC P L L+IERF IPE + T + +LK
Sbjct: 616 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELK 675
Query: 341 KFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSK 400
+FRKEY+QPVQ RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K
Sbjct: 676 RFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITK 735
Query: 401 VIFRKTDPLELQKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEY 458
+I RK + F SPP +EWH+ E +++L LHP+EIARQLTLLES+
Sbjct: 736 IIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDL 795
Query: 459 YRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRA 518
YRAV+PSE+VGS WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR
Sbjct: 796 YRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRI 855
Query: 519 IEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKY 578
IEI+ V +LNNFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY
Sbjct: 856 IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKY 915
Query: 579 QERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQ 638
+LRSINPPCVPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+Q
Sbjct: 916 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 975
Query: 639 NSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLS 698
N PYCL VE I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ +
Sbjct: 976 NQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYP 1034
Query: 699 LKSPGIKAS 707
LKSPG++ S
Sbjct: 1035 LKSPGVRPS 1043
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/729 (52%), Positives = 503/729 (68%), Gaps = 35/729 (4%)
Query: 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 60
G+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q +
Sbjct: 131 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGM 190
Query: 61 ----SDSLQNYPRNGRDTGIRAYNRL--KRQQAIEKTNELSKTVDGWTSVDIGQCCNEFF 114
S SL R ++ R Y++ +Q AI+K NE+ K +DGW DIGQCCNEF
Sbjct: 191 EKICSKSLAK--RRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFI 248
Query: 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFF 174
E TL + +G K E R FLFDGL++ CK N + + G + EYRLKE+FF
Sbjct: 249 MEGTLTR--VGAKHE---RHIFLFDGLMICCKSNHGQPRLP-----GASNAEYRLKEKFF 298
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLD 234
+R+++I D D+++YK+AF+I+ + + VI A S E+KNNWMA LI L +S ER LD
Sbjct: 299 MRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLD 358
Query: 235 SILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEKDN-HTGVPLIKGATLYKLVERLTY 293
+L EEK+ +R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTY
Sbjct: 359 VTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTY 418
Query: 294 HIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLK 340
H+YADP FVRTFLTTYRSFC P L L+IERF IPE + T + +LK
Sbjct: 419 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELK 478
Query: 341 KFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSK 400
+FRKEY+QPVQ RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K
Sbjct: 479 RFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITK 538
Query: 401 VIFRKTDPLELQKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEY 458
+I RK + F SPP +EWH+ E +++L LHP+EIARQLTLLES+
Sbjct: 539 IIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDL 598
Query: 459 YRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRA 518
YRAV+PSE+VGS WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR
Sbjct: 599 YRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRI 658
Query: 519 IEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKY 578
IEI+ V +LNNFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY
Sbjct: 659 IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKY 718
Query: 579 QERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQ 638
+LRSINPPCVPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+Q
Sbjct: 719 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 778
Query: 639 NSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLS 698
N PYCL VE I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ +
Sbjct: 779 NQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYP 837
Query: 699 LKSPGIKAS 707
LKSPG++ S
Sbjct: 838 LKSPGVRPS 846
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/729 (52%), Positives = 503/729 (68%), Gaps = 35/729 (4%)
Query: 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 60
G+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q +
Sbjct: 131 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGM 190
Query: 61 ----SDSLQNYPRNGRDTGIRAYNRL--KRQQAIEKTNELSKTVDGWTSVDIGQCCNEFF 114
S SL R ++ R Y++ +Q AI+K NE+ K +DGW DIGQCCNEF
Sbjct: 191 EKICSKSLAK--RRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFI 248
Query: 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFF 174
E TL + +G K E R FLFDGL++ CK N + + G + EYRLKE+FF
Sbjct: 249 MEGTLTR--VGAKHE---RHIFLFDGLMICCKSNHGQPRLP-----GASNAEYRLKEKFF 298
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLD 234
+R+++I D D+++YK+AF+I+ + + VI A S E+KNNWMA LI L +S ER LD
Sbjct: 299 MRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLD 358
Query: 235 SILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTY 293
+L EEK+ +R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTY
Sbjct: 359 VTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTY 418
Query: 294 HIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLK 340
H+YADP FVRTFLTTYRSFC P L L+IERF IPE + T + +LK
Sbjct: 419 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELK 478
Query: 341 KFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSK 400
+FRKEY+QPVQ RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K
Sbjct: 479 RFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITK 538
Query: 401 VIFRKTDPLELQKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEY 458
+I RK + F SPP +EWH+ E +++L LHP+EIARQLTLLES+
Sbjct: 539 IIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDL 598
Query: 459 YRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRA 518
YRAV+PSE+VGS WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR
Sbjct: 599 YRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRI 658
Query: 519 IEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKY 578
IEI+ V +LNNFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY
Sbjct: 659 IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKY 718
Query: 579 QERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQ 638
+LRSINPPCVPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+Q
Sbjct: 719 LAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 778
Query: 639 NSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLS 698
N PYCL VE I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ +
Sbjct: 779 NQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYP 837
Query: 699 LKSPGIKAS 707
LKSPG++ S
Sbjct: 838 LKSPGVRPS 846
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/478 (57%), Positives = 350/478 (73%), Gaps = 17/478 (3%)
Query: 246 LRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRT 304
+R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+YADP FVRT
Sbjct: 8 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 67
Query: 305 FLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYVQPVQ 351
FLTTYRSFC P L L+IERF IPE + T + +LK+FRKEY+QPVQ
Sbjct: 68 FLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQ 127
Query: 352 FRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLEL 411
RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I RK +
Sbjct: 128 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDN 187
Query: 412 QKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVG 469
F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YRAV+PSE+VG
Sbjct: 188 GPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVG 247
Query: 470 SAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLN 529
S WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IEI+ V +LN
Sbjct: 248 SVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELN 307
Query: 530 NFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPC 589
NFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY +LRSINPPC
Sbjct: 308 NFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPC 367
Query: 590 VPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPR 649
VPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN PYCL VE
Sbjct: 368 VPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESD 427
Query: 650 IRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIKAS 707
I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ + LKSPG++ S
Sbjct: 428 IKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 484
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/478 (57%), Positives = 350/478 (73%), Gaps = 17/478 (3%)
Query: 246 LRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRT 304
+R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+YADP FVRT
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 305 FLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYVQPVQ 351
FLTTYRSFC P L L+IERF IPE + T + +LK+FRKEY+QPVQ
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQ 121
Query: 352 FRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLEL 411
RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I RK +
Sbjct: 122 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDN 181
Query: 412 QKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVG 469
F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YRAV+PSE+VG
Sbjct: 182 GPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVG 241
Query: 470 SAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLN 529
S WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IEI+ V +LN
Sbjct: 242 SVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELN 301
Query: 530 NFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPC 589
NFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY +LRSINPPC
Sbjct: 302 NFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPC 361
Query: 590 VPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPR 649
VPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN PYCL VE
Sbjct: 362 VPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESD 421
Query: 650 IRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIKAS 707
I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ + LKSPG++ S
Sbjct: 422 IKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 478
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/478 (57%), Positives = 350/478 (73%), Gaps = 17/478 (3%)
Query: 246 LRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRT 304
+R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+YADP FVRT
Sbjct: 2 MRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRT 61
Query: 305 FLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYVQPVQ 351
FLTTYRSFC P L L+IERF IPE + T + +LK+FRKEY+QPVQ
Sbjct: 62 FLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQ 121
Query: 352 FRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLEL 411
RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I RK +
Sbjct: 122 LRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDN 181
Query: 412 QKQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVG 469
F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YRAV+PSE+VG
Sbjct: 182 GPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVG 241
Query: 470 SAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLN 529
S WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IEI+ V +LN
Sbjct: 242 SVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELN 301
Query: 530 NFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPC 589
NFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY +LRSINPPC
Sbjct: 302 NFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPC 361
Query: 590 VPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPR 649
VPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN PYCL VE
Sbjct: 362 VPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESD 421
Query: 650 IRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIKAS 707
I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ + LKSPG++ S
Sbjct: 422 IKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 478
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/477 (57%), Positives = 349/477 (73%), Gaps = 17/477 (3%)
Query: 247 RQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRTF 305
R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+YADP FVRTF
Sbjct: 1 RLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTF 60
Query: 306 LTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYVQPVQF 352
LTTYRSFC P L L+IERF IPE + T + +LK+FRKEY+QPVQ
Sbjct: 61 LTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQL 120
Query: 353 RVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLELQ 412
RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I RK +
Sbjct: 121 RVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDNG 180
Query: 413 KQIKFAFDRSPPPIEWHLK--CSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGS 470
F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YRAV+PSE+VGS
Sbjct: 181 PGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGS 240
Query: 471 AWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNN 530
WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IEI+ V +LNN
Sbjct: 241 VWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNN 300
Query: 531 FNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPCV 590
FNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY +LRSINPPCV
Sbjct: 301 FNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCV 360
Query: 591 PFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRI 650
PFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN PYCL VE I
Sbjct: 361 PFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDI 420
Query: 651 RRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIKAS 707
+RF ENL P N E + ++YL+ +SL+IEPR K P+++ + LKSPG++ S
Sbjct: 421 KRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYPLKSPGVRPS 476
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 140/236 (59%), Gaps = 18/236 (7%)
Query: 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVD- 59
G+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q
Sbjct: 131 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGX 190
Query: 60 ---LSDSLQNYPRNGRDTGIRAYNRLKR--QQAIEKTNELSKTVDGWTSVDIGQCCNEFF 114
S SL R ++ R Y++ + Q AI+K NE+ K +DGW DIGQCCNEF
Sbjct: 191 EKICSKSLAK--RRLSESACRFYSQQXKGKQLAIKKXNEIQKNIDGWEGKDIGQCCNEFI 248
Query: 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFF 174
E TL + +G K E R FLFDGL + CK N + + G + EYRLKE+FF
Sbjct: 249 XEGTLTR--VGAKHE---RHIFLFDGLXICCKSNHGQPRLP-----GASNAEYRLKEKFF 298
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230
R+++I D D+++YK+AF+I+ + + VI A S E+KNNW A LI L +S E
Sbjct: 299 XRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWXAALISLQYRSTLE 354
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 145/240 (60%), Gaps = 11/240 (4%)
Query: 445 VEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVE 504
+EIA QLTLL+ ++++ E G W K+ K E++P ++K KH + + ++ I+
Sbjct: 7 LEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIR 66
Query: 505 TENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENAL 564
E++ R + + + + + + L+N+N VL I S++ ++++RLK T+ + + ++ L
Sbjct: 67 NEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLL 126
Query: 565 VELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFS 622
+L++L + F+ +E LR+ +PPCVP+ GMYLT+++ IEEG P+Y + + L+NFS
Sbjct: 127 DKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNY---TEDGLVNFS 183
Query: 623 KRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPR 682
K R ++ I EI+QFQ + Y + +P++ ++L D +D LYE SL IEP+
Sbjct: 184 KMRMISHIIREIRQFQQTTYKIDPQPKVIQYL-----LDESFMLD-EESLYESSLLIEPK 237
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 138 bits (347), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 10/144 (6%)
Query: 84 RQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLL 143
+Q AI+K NE+ K +DGW DIGQCCNEF E TL + +G K E R FLFDGL++
Sbjct: 3 KQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTR--VGAKHE---RHIFLFDGLMI 57
Query: 144 LCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPV 203
CK N + + G + EYRLKE+FF+R+++I D D+ +YK+AF+I+ + G+ V
Sbjct: 58 CCKSNHGQPRLP-----GASSAEYRLKEKFFMRKVQINDKDDTSEYKHAFEIILKDGNSV 112
Query: 204 ILIANSPEDKNNWMADLIMLNTKS 227
I A S E+KNNWMA LI L +S
Sbjct: 113 IFSAKSAEEKNNWMAALISLQYRS 136
>pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20
Structures
Length = 130
Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 10/139 (7%)
Query: 92 NELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR 151
NE+ K +DGW DIGQCCNEF E TL + +G K E R FLFDGL++ CK N +
Sbjct: 2 NEIQKNIDGWEGKDIGQCCNEFIMEGTLTR--VGAKHE---RHIFLFDGLMICCKSNHGQ 56
Query: 152 TSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPE 211
+ G + EYRLKE+FF+R+++I D D+++YK+AF+I+ + + VI A S E
Sbjct: 57 PRLP-----GASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAE 111
Query: 212 DKNNWMADLIMLNTKSMFE 230
+KNNWMA LI L +S E
Sbjct: 112 EKNNWMAALISLQYRSTLE 130
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 138/252 (54%), Gaps = 14/252 (5%)
Query: 437 WNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTR 496
+++L + P E A Q+TL++ ++A++P E+ W+K K +PN++ + +
Sbjct: 26 FDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSF 85
Query: 497 WLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQAL 556
W+ + I+ + L+ R I+S ++I L +LNN + ++++VSAL SA ++RL T+ L
Sbjct: 86 WVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALL 145
Query: 557 PARLENALVELRELGN--DHFRKYQERLRSIN-PPCVPFFGMYLTNILHIEEGNPDYLPN 613
+ + +L L + D++++ +E +RS+ P +P+ G+YL ++++I+ P
Sbjct: 146 NRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSA----YPA 201
Query: 614 SNEELINFSKRRRVAEITGEIQQFQNSPYC----LSVEPRIRRFLENLTPFDNWKEIDIS 669
S + N + ++ I I Q S C L+ P ++++L+++ + ++ +
Sbjct: 202 SGSIMENEQRSNQMNNILRIIADLQVS--CSYDHLTTLPHVQKYLKSVRYIEELQKF-VE 258
Query: 670 NYLYEQSLKIEP 681
+ Y+ SL+IEP
Sbjct: 259 DDNYKLSLRIEP 270
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 18/245 (7%)
Query: 446 EIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVET 505
++A Q+T + E + V E++ + + N ++ + NL ++ W+ +
Sbjct: 763 DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLC 822
Query: 506 ENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALV 565
L +R+ ++ + I+I + N N AIV L + +V RL T++ LP++ +
Sbjct: 823 SQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYA 882
Query: 566 ELRELGN--DHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSK 623
E L + + R Y+ + PP +PF + + ++ EGN ++ N L+NF K
Sbjct: 883 EFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----LVNFEK 938
Query: 624 RRRVAEITGEIQQFQNSPYCLSV------EPRIRRFLENLTPFDNWKEIDISNYLYEQSL 677
R +A ++ +++ P+ +R ++ L DN + L + S
Sbjct: 939 MRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRT------LSQMSH 992
Query: 678 KIEPR 682
++EPR
Sbjct: 993 RLEPR 997
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 18/245 (7%)
Query: 446 EIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVET 505
++A Q+T + E + V E++ + + N ++ + NL ++ W+ +
Sbjct: 763 DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLC 822
Query: 506 ENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALV 565
L +R+ ++ + I+I + N N AIV L + +V RL T++ LP++ +
Sbjct: 823 SQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYA 882
Query: 566 ELRELGN--DHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSK 623
E L + + R Y+ + PP +PF + + ++ EGN ++ N L+NF K
Sbjct: 883 EFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----LVNFEK 938
Query: 624 RRRVAEITGEIQQFQNSPYCLSV------EPRIRRFLENLTPFDNWKEIDISNYLYEQSL 677
R +A ++ +++ P+ +R ++ L DN + L + S
Sbjct: 939 MRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRT------LSQMSH 992
Query: 678 KIEPR 682
++EPR
Sbjct: 993 RLEPR 997
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 18/245 (7%)
Query: 446 EIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVET 505
++A Q+T + E + V E++ + + N ++ + NL ++ W+ +
Sbjct: 458 DLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLC 517
Query: 506 ENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALV 565
L +R+ ++ + I+I + N N AIV L + +V RL T++ LP++ +
Sbjct: 518 SQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYA 577
Query: 566 ELRELGN--DHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSK 623
E L + + R Y+ + PP +PF + + ++ EGN ++ N L+NF K
Sbjct: 578 EFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----LVNFEK 633
Query: 624 RRRVAEITGEIQQFQNSPYCLSV------EPRIRRFLENLTPFDNWKEIDISNYLYEQSL 677
R +A ++ +++ P+ +R ++ L DN + L + S
Sbjct: 634 MRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRT------LSQMSH 687
Query: 678 KIEPR 682
++EPR
Sbjct: 688 RLEPR 692
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
R +R + I+K + +++ W D+ +E L ++ + +S +R+ FLFD
Sbjct: 302 RKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVT-QPQAKSQQRMFFLFDH 360
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD------YKNAFQ 194
L+ CK + R V K R + +E++DL D D KNAF+
Sbjct: 361 QLIYCKKDLLRRDV------------LYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFR 408
Query: 195 I-VPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEE 241
+ G +L PE K W+ F R + + LD+E
Sbjct: 409 LHRGATGDSHLLCTRKPEQKQRWL---------KAFAREREQVQLDQE 447
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
R +R + I+K + +++ W D+ +E L ++ + +S +R FLFD
Sbjct: 339 RKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVT-QPQAKSQQRXFFLFDH 397
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD------YKNAFQ 194
L+ CK + R V K R +E++DL D D KNAF+
Sbjct: 398 QLIYCKKDLLRRDV------------LYYKGRLDXDGLEVVDLEDGKDRDLHVSIKNAFR 445
Query: 195 I-VPRCGSPVILIANSPEDKNNWM 217
+ G +L PE K W+
Sbjct: 446 LHRGATGDSHLLCTRKPEQKQRWL 469
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNE--FFREDTLLKLNIGKKTESTERVCFLF 138
R +R + I+K + +V W DI +E + E + G+ + +RV FLF
Sbjct: 225 RKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGR---NQQRVFFLF 281
Query: 139 DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS--DDY----KNA 192
D ++LCK + R + K R + + E++D+ D DD+ KNA
Sbjct: 282 DHQMVLCKKDLIRRDILY------------YKGRIDMDKYEVIDIEDGRDDDFNVSMKNA 329
Query: 193 FQIVPRCGSPV-ILIANSPEDKNNWM 217
F++ + V + A E+K W+
Sbjct: 330 FKLHNKETEEVHLFFAKKLEEKIRWL 355
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 659 PFDNWKEIDISNYLYEQSLKIEPRYAKLRKDI 690
P NW E+DI Y+Y + + I P Y +D+
Sbjct: 204 PLSNWTELDIWQYIYLEGIPIVPLYFAAERDV 235
>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
(Alcc) From Bordetella Bronchiseptica
pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
(Alcc) With Adenosine From Bordetella Bronchiseptica
pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin Biosynthesis Protein C
(Alcc) With Atp From Bordetella Bronchiseptica
Length = 618
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 640 SPYCLSVEPRIRRFLENLTPFDNW------------KEIDISNYLYEQSLKIEPRYAKLR 687
SPY ++ P I ++ +L D W + NY YE ++ + Y K+
Sbjct: 315 SPYYMAGTPAINEYIHDLISADPWLRANGFRILREVASMGFRNYYYEAAIDTDTPYKKMF 374
Query: 688 KDIPRRWPNLSLKSPG 703
+ R P L+L +PG
Sbjct: 375 SALWRENP-LTLIAPG 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,497,646
Number of Sequences: 62578
Number of extensions: 1081626
Number of successful extensions: 2410
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2340
Number of HSP's gapped (non-prelim): 24
length of query: 966
length of database: 14,973,337
effective HSP length: 108
effective length of query: 858
effective length of database: 8,214,913
effective search space: 7048395354
effective search space used: 7048395354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)