Query psy4663
Match_columns 966
No_of_seqs 507 out of 1856
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:35:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3629|consensus 100.0 4.1E-58 8.8E-63 504.3 33.1 389 272-689 60-480 (728)
2 smart00147 RasGEF Guanine nucl 100.0 5.9E-50 1.3E-54 431.8 22.8 237 439-683 1-242 (242)
3 cd00155 RasGEF Guanine nucleot 100.0 3.7E-48 7.9E-53 416.5 22.9 232 439-678 1-237 (237)
4 KOG3542|consensus 100.0 3.1E-39 6.7E-44 361.2 34.7 200 438-642 863-1066(1283)
5 KOG2378|consensus 100.0 2.4E-39 5.1E-44 351.9 26.6 389 278-683 69-573 (573)
6 PF00617 RasGEF: RasGEF domain 100.0 2.5E-40 5.4E-45 342.8 13.1 184 440-626 1-188 (188)
7 KOG3541|consensus 100.0 1.8E-32 3.9E-37 296.0 19.9 389 277-685 24-464 (477)
8 KOG3417|consensus 100.0 6.1E-31 1.3E-35 328.0 8.3 472 252-734 7-521 (840)
9 KOG4424|consensus 99.9 2.4E-26 5.2E-31 258.7 15.3 194 3-230 171-375 (623)
10 KOG2996|consensus 99.9 1.9E-26 4E-31 256.7 10.9 184 8-227 321-514 (865)
11 cd01261 PH_SOS Son of Sevenles 99.9 1E-25 2.2E-30 211.4 12.2 112 110-227 1-112 (112)
12 KOG3518|consensus 99.9 5.4E-26 1.2E-30 239.5 5.3 177 6-222 242-430 (521)
13 cd01224 PH_Collybistin Collybi 99.9 4.3E-21 9.4E-26 177.4 12.2 98 112-222 1-105 (109)
14 cd01218 PH_phafin2 Phafin2 Pl 99.8 6.5E-20 1.4E-24 170.5 12.1 101 110-227 1-101 (104)
15 cd01220 PH_CDEP Chondrocyte-de 99.8 1.4E-19 3.1E-24 167.6 11.6 98 112-225 1-98 (99)
16 PF00618 RasGEF_N: RasGEF N-te 99.8 1.2E-19 2.7E-24 170.2 8.0 102 279-382 2-104 (104)
17 smart00229 RasGEFN Guanine nuc 99.8 6.2E-19 1.3E-23 171.5 11.6 121 277-403 3-124 (127)
18 cd01222 PH_clg Clg (common-sit 99.8 3.2E-18 6.9E-23 157.1 11.7 93 110-224 1-95 (97)
19 cd01219 PH_FGD FGD (faciogenit 99.8 3.9E-18 8.4E-23 159.2 11.7 100 112-225 1-100 (101)
20 cd06224 REM Guanine nucleotide 99.7 2.2E-17 4.8E-22 159.1 11.8 104 283-389 1-105 (122)
21 cd01223 PH_Vav Vav pleckstrin 99.7 2.3E-17 5E-22 153.9 9.3 106 110-226 1-113 (116)
22 cd01232 PH_TRIO Trio pleckstri 99.7 2.1E-16 4.5E-21 149.4 11.4 107 111-225 3-113 (114)
23 KOG3523|consensus 99.6 1.7E-15 3.6E-20 172.1 15.5 187 3-221 370-591 (695)
24 KOG0689|consensus 99.6 3.8E-16 8.3E-21 177.6 8.7 175 9-227 185-363 (448)
25 KOG2070|consensus 99.6 5E-16 1.1E-20 171.7 8.5 176 11-222 228-404 (661)
26 KOG3531|consensus 99.6 1.6E-16 3.4E-21 184.8 4.6 179 4-222 661-842 (1036)
27 cd01227 PH_Dbs Dbs (DBL's big 99.6 1E-14 2.2E-19 141.0 12.0 108 111-227 1-118 (133)
28 cd01228 PH_BCR-related BCR (br 99.6 5.8E-15 1.3E-19 131.7 6.8 95 111-225 1-95 (96)
29 KOG3417|consensus 99.6 9.3E-15 2E-19 183.3 11.1 223 443-683 609-834 (840)
30 KOG4240|consensus 99.6 5E-16 1.1E-20 187.7 -0.3 177 8-229 755-933 (1025)
31 KOG3521|consensus 99.5 1.7E-14 3.6E-19 164.7 10.5 180 9-224 315-526 (846)
32 cd01226 PH_exo84 Exocyst compl 99.5 3E-13 6.6E-18 123.8 10.9 96 113-223 2-97 (100)
33 cd01225 PH_Cool_Pix Cool (clon 99.4 1.2E-12 2.6E-17 120.7 11.1 107 101-222 1-107 (111)
34 KOG3520|consensus 99.4 2E-13 4.3E-18 166.7 7.5 174 9-222 525-719 (1167)
35 KOG1924|consensus 99.4 1.7E-12 3.8E-17 150.3 11.4 60 587-656 398-462 (1102)
36 cd01221 PH_ephexin Ephexin Ple 99.3 4.3E-12 9.3E-17 121.2 10.1 97 111-221 1-119 (125)
37 KOG1924|consensus 99.2 7.2E-11 1.6E-15 137.2 10.8 18 350-367 208-225 (1102)
38 KOG3519|consensus 99.1 5.1E-11 1.1E-15 147.3 2.7 149 10-185 468-621 (756)
39 KOG4305|consensus 99.0 5.3E-10 1.1E-14 137.0 8.1 202 8-228 466-690 (1029)
40 KOG3524|consensus 98.9 2.7E-09 5.9E-14 123.6 7.3 199 2-221 501-708 (850)
41 PF00169 PH: PH domain; Inter 98.9 1.8E-08 4E-13 92.5 11.0 97 114-224 2-103 (104)
42 PHA03247 large tegument protei 98.7 1.3E-06 2.7E-11 113.5 25.4 13 203-215 1956-1968(3151)
43 PHA03247 large tegument protei 98.7 2.3E-06 5E-11 111.2 26.1 9 649-657 2532-2540(3151)
44 KOG3522|consensus 98.7 8.8E-09 1.9E-13 122.1 4.3 147 15-184 121-272 (925)
45 smart00233 PH Pleckstrin homol 98.7 1.2E-07 2.7E-12 85.6 10.2 97 114-223 2-100 (102)
46 PF15411 PH_10: Pleckstrin hom 98.6 2.5E-07 5.4E-12 88.3 10.4 106 110-220 4-116 (116)
47 cd00821 PH Pleckstrin homology 98.5 4.8E-07 1E-11 80.9 7.6 94 116-222 2-95 (96)
48 KOG3671|consensus 98.4 5.4E-06 1.2E-10 93.8 14.6 13 452-464 89-101 (569)
49 cd00160 RhoGEF Guanine nucleot 98.3 3.6E-07 7.7E-12 93.9 4.6 53 9-61 128-181 (181)
50 cd01246 PH_oxysterol_bp Oxyste 98.3 3.6E-06 7.9E-11 76.3 9.6 90 115-222 1-90 (91)
51 smart00325 RhoGEF Guanine nucl 98.3 3.8E-07 8.2E-12 93.6 3.3 53 10-62 127-180 (180)
52 COG5422 ROM1 RhoGEF, Guanine n 98.3 9.8E-07 2.1E-11 104.8 6.6 192 5-224 612-834 (1175)
53 cd01247 PH_GPBP Goodpasture an 98.2 6.5E-06 1.4E-10 75.5 9.5 90 115-222 1-90 (91)
54 cd01233 Unc104 Unc-104 pleckst 98.2 1.1E-05 2.3E-10 75.4 9.9 93 113-223 2-97 (100)
55 KOG0931|consensus 98.2 2E-06 4.2E-11 96.0 5.7 138 74-223 372-524 (627)
56 cd00900 PH-like Pleckstrin hom 98.1 2.2E-05 4.7E-10 70.6 9.9 79 129-222 18-98 (99)
57 KOG3671|consensus 98.1 4.2E-05 9.1E-10 86.8 13.2 6 876-881 415-420 (569)
58 KOG1729|consensus 98.0 1.9E-06 4.1E-11 94.3 2.2 122 90-230 24-146 (288)
59 cd01238 PH_Tec Tec pleckstrin 98.0 2.7E-05 5.8E-10 73.6 9.1 94 114-222 1-105 (106)
60 cd01260 PH_CNK Connector enhan 98.0 2.8E-05 6.1E-10 71.8 9.1 91 115-222 2-95 (96)
61 PF15405 PH_5: Pleckstrin homo 98.0 1.2E-05 2.6E-10 79.1 6.8 99 113-223 1-134 (135)
62 cd01252 PH_cytohesin Cytohesin 97.9 5.7E-05 1.2E-09 73.4 10.5 96 115-228 2-117 (125)
63 PF00621 RhoGEF: RhoGEF domain 97.9 9.1E-06 2E-10 82.8 5.0 52 11-62 128-180 (180)
64 cd01250 PH_centaurin Centaurin 97.8 0.00011 2.3E-09 67.0 9.3 92 115-221 1-92 (94)
65 cd01251 PH_centaurin_alpha Cen 97.7 0.00018 4E-09 67.5 9.2 94 115-225 1-101 (103)
66 cd01244 PH_RasGAP_CG9209 RAS_G 97.7 0.00019 4.2E-09 66.6 9.1 74 131-222 22-97 (98)
67 cd01257 PH_IRS Insulin recepto 97.6 0.00029 6.4E-09 65.8 9.3 92 113-222 2-100 (101)
68 cd01235 PH_SETbf Set binding f 97.6 0.00042 9E-09 64.4 9.7 90 116-223 2-100 (101)
69 cd01264 PH_melted Melted pleck 97.6 0.00031 6.8E-09 65.5 8.3 75 132-222 21-99 (101)
70 cd01241 PH_Akt Akt pleckstrin 97.5 0.00041 8.8E-09 65.0 9.0 90 114-222 2-100 (102)
71 cd01266 PH_Gab Gab (Grb2-assoc 97.5 0.00047 1E-08 65.3 9.5 76 131-223 20-107 (108)
72 cd01265 PH_PARIS-1 PARIS-1 ple 97.5 0.00058 1.3E-08 63.2 9.5 88 116-222 2-92 (95)
73 cd01236 PH_outspread Outspread 97.5 0.0006 1.3E-08 64.0 9.2 77 131-222 25-102 (104)
74 KOG0930|consensus 97.3 0.0017 3.8E-08 69.0 10.6 130 87-233 227-384 (395)
75 cd01229 PH_etc2 Epithelial cel 97.2 0.0015 3.3E-08 61.1 8.4 93 131-224 26-127 (129)
76 cd01253 PH_beta_spectrin Beta- 97.2 0.0023 5E-08 59.9 9.5 77 131-221 24-102 (104)
77 KOG1830|consensus 97.1 0.024 5.2E-07 63.8 17.2 21 946-966 483-503 (518)
78 cd01245 PH_RasGAP_CG5898 RAS G 97.0 0.0027 5.9E-08 59.0 7.6 74 132-222 18-97 (98)
79 KOG1830|consensus 96.8 0.014 3E-07 65.6 12.9 24 439-462 92-115 (518)
80 cd01230 PH_EFA6 EFA6 Pleckstri 96.8 0.0082 1.8E-07 57.7 9.7 83 131-223 27-110 (117)
81 cd01256 PH_dynamin Dynamin ple 96.7 0.011 2.4E-07 54.0 9.0 77 130-222 19-103 (110)
82 KOG1923|consensus 96.6 0.0077 1.7E-07 72.3 9.4 6 650-655 207-212 (830)
83 PF15413 PH_11: Pleckstrin hom 96.3 0.023 5E-07 54.2 9.5 104 115-222 1-111 (112)
84 PTZ00267 NIMA-related protein 96.2 0.037 8.1E-07 66.1 12.3 102 110-223 374-475 (478)
85 cd01254 PH_PLD Phospholipase D 96.1 0.042 9.2E-07 53.2 10.3 75 131-222 34-120 (121)
86 cd01263 PH_anillin Anillin Ple 96.0 0.03 6.5E-07 54.2 8.6 54 169-222 45-121 (122)
87 KOG1923|consensus 95.4 0.061 1.3E-06 64.9 9.6 10 940-950 368-377 (830)
88 PF15409 PH_8: Pleckstrin homo 95.4 0.13 2.8E-06 46.9 9.5 72 130-222 14-87 (89)
89 cd01255 PH_TIAM TIAM Pleckstri 95.1 0.17 3.7E-06 49.3 9.9 115 111-225 25-155 (160)
90 cd01237 Unc112 Unc-112 pleckst 95.1 0.11 2.3E-06 48.9 8.2 51 172-222 48-101 (106)
91 cd01249 PH_oligophrenin Oligop 94.7 0.15 3.3E-06 47.7 8.1 48 172-220 53-101 (104)
92 PHA01732 proline-rich protein 94.5 0.096 2.1E-06 46.4 5.9 22 920-941 38-59 (94)
93 PF12814 Mcp5_PH: Meiotic cell 94.4 0.27 5.9E-06 47.7 9.7 53 172-225 63-122 (123)
94 PF15410 PH_9: Pleckstrin homo 94.2 0.15 3.2E-06 49.3 7.2 88 132-222 28-116 (119)
95 KOG0132|consensus 93.5 1.7 3.6E-05 53.1 15.5 20 616-635 459-478 (894)
96 KOG0690|consensus 93.5 0.092 2E-06 58.0 4.8 88 132-234 33-126 (516)
97 KOG4269|consensus 93.3 0.18 4E-06 61.7 7.3 126 12-181 475-611 (1112)
98 KOG0132|consensus 93.2 2.4 5.1E-05 51.9 16.1 11 319-329 219-229 (894)
99 KOG4672|consensus 92.9 0.65 1.4E-05 52.5 10.3 15 441-455 46-60 (487)
100 PF14593 PH_3: PH domain; PDB: 91.7 2.4 5.2E-05 40.0 11.1 89 110-225 10-100 (104)
101 KOG4672|consensus 91.3 0.8 1.7E-05 51.8 8.7 8 919-926 404-411 (487)
102 KOG2059|consensus 91.2 0.27 5.9E-06 59.1 5.3 93 112-222 564-662 (800)
103 KOG0521|consensus 91.2 0.88 1.9E-05 57.3 10.0 75 131-222 292-366 (785)
104 cd01242 PH_ROK Rok (Rho- assoc 88.2 2.9 6.2E-05 39.6 8.4 39 186-224 71-110 (112)
105 COG5178 PRP8 U5 snRNP spliceos 86.7 0.53 1.1E-05 58.9 3.4 22 921-942 53-74 (2365)
106 PTZ00283 serine/threonine prot 86.6 6.1 0.00013 47.6 12.5 35 188-222 453-487 (496)
107 KOG4849|consensus 84.0 20 0.00044 40.1 13.6 19 929-947 357-376 (498)
108 KOG0260|consensus 83.5 27 0.00058 45.1 15.7 51 15-65 642-693 (1605)
109 cd01243 PH_MRCK MRCK (myotonic 83.0 9.1 0.0002 36.9 9.2 39 187-225 76-120 (122)
110 KOG0307|consensus 81.3 97 0.0021 40.1 19.6 198 721-924 695-910 (1049)
111 cd01231 PH_Lnk LNK-family Plec 78.9 1.7 3.6E-05 40.3 2.7 34 189-222 73-106 (107)
112 KOG0260|consensus 78.8 63 0.0014 42.0 16.7 60 493-558 1174-1236(1605)
113 PLN00188 enhanced disease resi 78.4 9 0.0002 47.3 9.4 100 112-226 3-111 (719)
114 KOG0391|consensus 77.3 1.1E+02 0.0024 40.2 18.1 25 446-470 1405-1429(1958)
115 PF15277 Sec3-PIP2_bind: Exocy 76.0 13 0.00027 34.3 7.6 59 164-224 30-88 (91)
116 PHA03378 EBNA-3B; Provisional 73.6 72 0.0016 39.1 14.6 8 909-916 800-807 (991)
117 PF15406 PH_6: Pleckstrin homo 73.6 4.6 9.9E-05 38.1 4.0 30 191-221 81-110 (112)
118 cd01240 PH_beta-ARK Beta adren 73.2 5.2 0.00011 37.7 4.3 93 113-224 3-98 (116)
119 cd01248 PH_PLC Phospholipase C 72.9 18 0.00038 34.5 8.2 33 190-222 79-114 (115)
120 KOG0119|consensus 72.3 1.5E+02 0.0032 35.3 16.4 14 507-520 216-229 (554)
121 KOG4849|consensus 69.6 69 0.0015 36.1 12.5 7 918-924 351-357 (498)
122 KOG0566|consensus 66.2 42 0.00092 42.6 11.2 19 505-526 686-704 (1080)
123 PF15408 PH_7: Pleckstrin homo 65.1 4.3 9.3E-05 36.4 1.9 92 116-222 1-95 (104)
124 PRK07764 DNA polymerase III su 64.6 58 0.0013 41.9 12.5 28 925-954 514-541 (824)
125 PF07174 FAP: Fibronectin-atta 63.7 31 0.00067 37.7 8.3 13 925-937 125-137 (297)
126 KOG0566|consensus 63.4 91 0.002 39.8 13.2 8 284-291 363-370 (1080)
127 KOG2893|consensus 62.1 96 0.0021 33.2 11.4 10 673-682 90-99 (341)
128 KOG1925|consensus 58.4 14 0.00031 43.1 5.1 21 930-954 321-341 (817)
129 cd03569 VHS_Hrs_Vps27p VHS dom 58.3 68 0.0015 32.0 9.3 73 281-370 2-77 (142)
130 KOG3723|consensus 58.3 7.6 0.00017 46.0 2.9 96 114-225 736-837 (851)
131 PF08458 PH_2: Plant pleckstri 57.7 54 0.0012 31.3 7.9 35 190-225 70-104 (110)
132 KOG1785|consensus 56.4 29 0.00062 39.7 6.8 7 677-683 382-388 (563)
133 PLN02866 phospholipase D 55.1 37 0.0008 44.0 8.3 37 187-224 271-307 (1068)
134 cd03567 VHS_GGA VHS domain fam 54.9 79 0.0017 31.5 9.1 72 283-371 1-75 (139)
135 KOG2675|consensus 54.3 11 0.00023 43.7 3.1 13 373-385 5-17 (480)
136 COG5101 CRM1 Importin beta-rel 52.8 1E+02 0.0022 37.7 10.8 132 448-582 171-331 (1053)
137 PRK14950 DNA polymerase III su 52.7 72 0.0016 39.4 10.3 12 315-326 160-171 (585)
138 KOG1785|consensus 52.3 38 0.00081 38.8 6.9 12 819-830 480-491 (563)
139 KOG3640|consensus 48.3 29 0.00063 43.9 5.7 78 132-222 1010-1104(1116)
140 KOG1985|consensus 45.6 3.6E+02 0.0079 34.2 14.2 8 931-938 182-189 (887)
141 cd03568 VHS_STAM VHS domain fa 44.6 1.1E+02 0.0024 30.6 8.4 71 284-371 1-74 (144)
142 cd03572 ENTH_epsin_related ENT 43.6 75 0.0016 30.9 6.7 68 287-371 5-75 (122)
143 cd01259 PH_Apbb1ip Apbb1ip (Am 42.9 56 0.0012 31.3 5.5 22 203-224 87-108 (114)
144 KOG0119|consensus 42.1 6.9E+02 0.015 30.0 18.1 12 513-524 215-226 (554)
145 KOG1451|consensus 41.2 1E+02 0.0023 37.2 8.5 36 185-220 327-363 (812)
146 PF03276 Gag_spuma: Spumavirus 40.2 1.3E+02 0.0028 36.2 9.0 14 945-958 326-339 (582)
147 smart00288 VHS Domain present 39.7 1.6E+02 0.0034 29.0 8.5 70 284-370 1-73 (133)
148 PRK14950 DNA polymerase III su 39.7 1.5E+02 0.0033 36.6 10.3 11 596-606 289-299 (585)
149 PF05308 Mito_fiss_reg: Mitoch 38.4 56 0.0012 35.9 5.6 25 572-596 8-34 (253)
150 KOG0162|consensus 38.4 1.9E+02 0.0041 36.1 10.2 24 443-466 568-591 (1106)
151 KOG4590|consensus 38.2 1.6E+02 0.0035 34.6 9.5 8 605-612 5-12 (409)
152 KOG0391|consensus 38.0 3E+02 0.0065 36.6 12.1 11 110-120 911-921 (1958)
153 PRK09752 adhesin; Provisional 37.6 29 0.00064 45.2 3.7 9 587-595 695-703 (1250)
154 PF00790 VHS: VHS domain; Int 36.9 1.4E+02 0.0031 29.4 7.9 72 282-370 4-78 (140)
155 cd01234 PH_CADPS CADPS (Ca2+-d 34.0 48 0.001 31.2 3.5 33 190-223 77-109 (117)
156 KOG1922|consensus 32.5 88 0.0019 40.4 6.9 6 948-953 500-505 (833)
157 KOG1739|consensus 31.1 84 0.0018 37.1 5.6 76 131-224 41-116 (611)
158 PF05308 Mito_fiss_reg: Mitoch 30.3 90 0.002 34.3 5.5 9 625-633 15-23 (253)
159 KOG0162|consensus 29.2 3.7E+02 0.008 33.7 10.5 11 131-141 204-214 (1106)
160 PRK07764 DNA polymerase III su 27.4 8.5E+02 0.018 31.6 14.2 15 314-328 159-173 (824)
161 KOG1090|consensus 27.1 33 0.00072 43.6 1.6 93 114-224 1635-1731(1732)
162 cd03561 VHS VHS domain family; 26.5 3.3E+02 0.0071 26.6 8.3 69 285-370 2-73 (133)
163 KOG2856|consensus 26.4 6.8E+02 0.015 28.9 11.3 15 690-704 286-300 (472)
164 PRK09752 adhesin; Provisional 25.8 61 0.0013 42.5 3.7 6 60-65 30-35 (1250)
165 cd03565 VHS_Tom1 VHS domain fa 25.6 3.6E+02 0.0077 26.8 8.4 71 283-371 1-76 (141)
166 KOG3541|consensus 25.3 39 0.00084 39.0 1.7 70 483-552 385-457 (477)
167 KOG2148|consensus 25.2 30 0.00065 42.1 0.8 67 163-230 62-128 (867)
168 TIGR01628 PABP-1234 polyadenyl 25.1 4.9E+02 0.011 31.8 11.4 8 208-215 50-57 (562)
169 PF15404 PH_4: Pleckstrin homo 25.1 52 0.0011 34.4 2.4 22 200-221 161-182 (185)
170 KOG3284|consensus 25.0 8.2E+02 0.018 25.7 11.9 46 630-675 154-202 (213)
171 PF05518 Totivirus_coat: Totiv 24.6 6.6E+02 0.014 31.9 11.8 19 276-294 134-152 (759)
172 KOG0705|consensus 24.4 65 0.0014 38.8 3.3 41 190-230 445-485 (749)
173 KOG1029|consensus 24.0 2.6E+02 0.0057 35.1 8.2 11 924-934 184-194 (1118)
174 PF03745 DUF309: Domain of unk 23.2 1.6E+02 0.0035 25.0 4.7 55 483-537 2-61 (62)
175 PRK14948 DNA polymerase III su 23.0 3.1E+02 0.0067 34.2 9.0 15 314-328 160-174 (620)
176 KOG0584|consensus 22.0 28 0.0006 42.4 -0.2 82 528-611 85-167 (632)
177 PF11537 DUF3227: Protein of u 21.5 1.1E+02 0.0024 28.4 3.5 50 2-56 47-96 (102)
178 PF05518 Totivirus_coat: Totiv 21.1 1.1E+03 0.023 30.1 12.7 20 575-596 462-481 (759)
179 KOG2236|consensus 20.9 3E+02 0.0064 32.6 7.6 14 590-603 272-285 (483)
180 PF14726 RTTN_N: Rotatin, an a 20.7 3.2E+02 0.0068 25.6 6.4 59 307-387 20-80 (98)
181 KOG1117|consensus 20.7 2.4E+02 0.0051 35.9 7.0 93 113-222 1030-1129(1186)
182 KOG2391|consensus 20.6 2.5E+02 0.0055 32.0 6.7 64 866-931 139-209 (365)
No 1
>KOG3629|consensus
Probab=100.00 E-value=4.1e-58 Score=504.35 Aligned_cols=389 Identities=23% Similarity=0.345 Sum_probs=315.8
Q ss_pred CCCCcccccccCHHHHHHHHccc-cCCChhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccch
Q psy4663 272 NHTGVPLIKGATLYKLVERLTYH-IYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPV 350 (966)
Q Consensus 272 ~~~~v~~IkagTL~kLIe~Lt~~-~~~D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~i 350 (966)
+.++.+.||||||++||++|+.. ...|..|+.+||.|||+|+++.+||++|.+||+..+..++ .+.+. .|
T Consensus 60 e~~k~r~ikAGTlE~LVe~Ll~~~~~~D~~~~svFlaTyR~Ftst~~vL~llldRye~e~s~~~--ses~~-------~v 130 (728)
T KOG3629|consen 60 ESVKERLIKAGTLERLVECLLGSDDMMDSRHFSVFLATYRSFTSTAIVLDLLLDRYELENSVNG--SESAL-------LV 130 (728)
T ss_pred cchhhhhhhcchHHHHHHHHhcCCCCcchhHHHHHHHHhhcccccHHHHHHHHHHHHhhhcCCc--hHHHH-------HH
Confidence 35788899999999999999853 5689999999999999999999999999999985543322 12221 24
Q ss_pred hhHHHHHHHHHhhhcccccccCHHHHHHHHHHHHHhhc--cchhhhhhhhhhhhhcccCchhhhhhhccccCCCCCCccc
Q psy4663 351 QFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETING--KSMRKWVDSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEW 428 (966)
Q Consensus 351 q~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~~~--~~~~k~~~~l~k~l~r~~~~~~~~~~~~~~~~~~~p~i~~ 428 (966)
|..|- +|+.|++.|+.||.+.+.+.+.+..+|+.... .........+.+-+.++.....+.-+...+|.
T Consensus 131 ~naI~-il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~~e~ra~a~l~r~~~~ri~~~~~~LP~~~~~~-------- 201 (728)
T KOG3629|consen 131 QNAIR-ILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELRAKARLQREVFKRIGGMQAALPSLGQYV-------- 201 (728)
T ss_pred HHHHH-HHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHhccccccCCCcccccc--------
Confidence 44444 99999999999998767777777777775322 12222222222222222122222222222221
Q ss_pred cccCCcccccccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCC-CCChhHHHHHHHHhccchhhhhhhcccC-
Q psy4663 429 HLKCSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKE-EKSPNLLKIIKHTTNFTRWLEKTIVETE- 506 (966)
Q Consensus 429 ~~~~~~~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~-~~spni~~~i~~fN~ls~wV~~~IL~~~- 506 (966)
...+.+.+++..+..+.||+|||++|.+||+++-++.|++++|++.|+. +.+|.|.+.|..||.++..|.++||..+
T Consensus 202 -~d~~~~~~dv~~f~~d~iAEQLT~~DA~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~l 280 (728)
T KOG3629|consen 202 -ADMGNKMFDVGKFNCDQIAEQLTFWDAALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDL 280 (728)
T ss_pred -CCCCccchhhhhhhHHHHHHHHHHHHHHHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 1122366888999999999999999999999999999999999998764 6789999999999999999999999864
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHc
Q psy4663 507 NLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRS 584 (966)
Q Consensus 507 ~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~ 584 (966)
..++||++|+|||+||.+|+.|.||.++.||+++|++.+|+|||.+|+.++.+....|++|.++ .++|+-+-|+.|-+
T Consensus 281 rp~qRAkiieKWI~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~q 360 (728)
T KOG3629|consen 281 RPEQRAKIIEKWIDIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQ 360 (728)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999998 46788777877643
Q ss_pred c-----------------------CCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhc--
Q psy4663 585 I-----------------------NPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQN-- 639 (966)
Q Consensus 585 ~-----------------------~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~-- 639 (966)
. ....|||||.||+||++++++.+|++++ |+|||+|+|+.+++|.+|+.+|+
T Consensus 361 eGtsksspLe~s~k~a~~r~qr~~~qGtVPyLGtFLtDLvMlDtA~~d~~e~---glINFeKRRkEFeVla~lrllQsaa 437 (728)
T KOG3629|consen 361 EGTSKSSPLEASPKRAHARWQRQDKQGTVPYLGTFLTDLVMLDTAMNDYPEE---GLINFEKRRKEFEVLAKLRLLQSAA 437 (728)
T ss_pred hcccccCCCCcchhhhhhhhhhccCCcccchHHHHHHHHHHHhhcccCCccc---ccchHhhhhHHHHHHHHHHHHHHHh
Confidence 2 1357999999999999999999999987 99999999999999999999998
Q ss_pred CCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCCcCCCCC
Q psy4663 640 SPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKD 689 (966)
Q Consensus 640 ~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~~~~~p~ 689 (966)
..||+.++..+++||.-+.. ++| |+.|.+|+++|+......|.
T Consensus 438 r~Ynl~pd~~f~aWf~~l~~---ltE----~es~~~s~eiE~p~~~stp~ 480 (728)
T KOG3629|consen 438 RHYNLHPDEEFGAWFQVLEQ---LTE----DESIIQSCEIEKPPMHSTPD 480 (728)
T ss_pred hccCCCchHHHHHHHHhccC---CcH----HHHHHHhhcccCCCCCCCCC
Confidence 68999999999999998754 344 56899999999998776554
No 2
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=5.9e-50 Score=431.80 Aligned_cols=237 Identities=44% Similarity=0.785 Sum_probs=223.2
Q ss_pred ccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCCh-hHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHH
Q psy4663 439 ILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSP-NLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSR 517 (966)
Q Consensus 439 ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~sp-ni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~k 517 (966)
++++++.|||+|||++|+++|++|++.||++..|++.+....+| ||.+++++||.+++||+.+||.+.+.++|+++|++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999887777778 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHccC-CCCccchh
Q psy4663 518 AIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSIN-PPCVPFFG 594 (966)
Q Consensus 518 fI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~~-~P~IPflG 594 (966)
||+||.+|+++|||||++||++||++++|+||++||+.|+.+.++.|++|.++ ..+||++||+.++++. .|||||||
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg 160 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG 160 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999998 5799999999999988 99999999
Q ss_pred HHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCCCCCCc-hHHHHHHHhhCCCCCCChhhhhhHHH
Q psy4663 595 MYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVE-PRIRRFLENLTPFDNWKEIDISNYLY 673 (966)
Q Consensus 595 v~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~-~~i~~~l~~l~~~~~~~e~~~~d~ly 673 (966)
+||+||+++++|+++++++ |+|||.|+|+++++|.+++.||+.+|+|..+ ++||.||.++. ..+.+ +|++|
T Consensus 161 ~~l~dl~~~~~~~~~~~~~---~~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~--~~~~~---~~~~~ 232 (242)
T smart00147 161 VLLKDLTFIDEGNPDFLEN---GLVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLL--DHLDE---EEELY 232 (242)
T ss_pred HHHHHHHHHHccCcccccC---CcccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH--hhcCC---HHHHH
Confidence 9999999999999999865 8999999999999999999999999999999 99999999872 12333 24799
Q ss_pred HhhhhcccCC
Q psy4663 674 EQSLKIEPRY 683 (966)
Q Consensus 674 ~lSl~iEPr~ 683 (966)
++|+++|||.
T Consensus 233 ~~S~~~EP~~ 242 (242)
T smart00147 233 QLSLKIEPRV 242 (242)
T ss_pred HHHHHhCCCC
Confidence 9999999984
No 3
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=3.7e-48 Score=416.55 Aligned_cols=232 Identities=42% Similarity=0.738 Sum_probs=218.3
Q ss_pred ccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCC-CCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHH
Q psy4663 439 ILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKE-EKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSR 517 (966)
Q Consensus 439 ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~-~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~k 517 (966)
++++|+.|||+|||++|+++|++|++.||++..|.+..+. +.+|||.+++++||.+++||+.+||.+.+.++|+++|++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999987655 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHcc--CCCCccch
Q psy4663 518 AIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSI--NPPCVPFF 593 (966)
Q Consensus 518 fI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~--~~P~IPfl 593 (966)
||+||.+|+++||||+++||++||++++|+||++||+.|+.+.++.|++|..+ .++||++||+.++++ ..|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999998 468999999999999 89999999
Q ss_pred hHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHH
Q psy4663 594 GMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLY 673 (966)
Q Consensus 594 Gv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly 673 (966)
|+||+||+++++|+++++++ ++|||.|+++++++|.++++||+.+|.|.++++||+||.++.. ..+++ |++|
T Consensus 161 g~~l~dl~~~~e~~~~~~~~---~~iN~~K~~~i~~~i~~~~~~Q~~~Y~~~~~~~iq~~l~~~~~-~~~~~----~~l~ 232 (237)
T cd00155 161 GVYLKDLTFLHEGNPDFLEG---NLVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWKLLE-LILNE----DELY 232 (237)
T ss_pred hHHHHHHHHHHccCCccCcC---CCccHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHhccc-cCCCH----HHHH
Confidence 99999999999999999874 8999999999999999999999999999999999999998763 12333 6799
Q ss_pred Hhhhh
Q psy4663 674 EQSLK 678 (966)
Q Consensus 674 ~lSl~ 678 (966)
++|++
T Consensus 233 ~~Sl~ 237 (237)
T cd00155 233 ELSLE 237 (237)
T ss_pred HHhcC
Confidence 99985
No 4
>KOG3542|consensus
Probab=100.00 E-value=3.1e-39 Score=361.22 Aligned_cols=200 Identities=28% Similarity=0.507 Sum_probs=184.4
Q ss_pred cccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHH
Q psy4663 438 NILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSR 517 (966)
Q Consensus 438 ~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~k 517 (966)
.++.++..|+|.||++-||++|++|.|.||+...+. -+.+..++++.++-+.||+-+.||+++||.+.+..+|+++|++
T Consensus 863 slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFK-L~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKh 941 (1283)
T KOG3542|consen 863 SLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFK-LDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKH 941 (1283)
T ss_pred hHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHh-hccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999987763 3334578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHcc--CCCCccch
Q psy4663 518 AIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSI--NPPCVPFF 593 (966)
Q Consensus 518 fI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~--~~P~IPfl 593 (966)
||+||.+|++++|||+++||++||+-.+|.||.-||+.|+.++.+.|++|++| ...|..+||+.|.+. ++|.||.+
T Consensus 942 FIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlf 1021 (1283)
T KOG3542|consen 942 FIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLF 1021 (1283)
T ss_pred HHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999 679999999999864 69999999
Q ss_pred hHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCC
Q psy4663 594 GMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPY 642 (966)
Q Consensus 594 Gv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y 642 (966)
.++-+||+|++|||..+++ |||||+|+|+|++-|..+.+.-..+|
T Consensus 1022 PViKKDlTFlHeGNdskvd----gLvNFEKLRmIaKeIR~V~rmsSanm 1066 (1283)
T KOG3542|consen 1022 PVIKKDLTFLHEGNDSKVD----GLVNFEKLRMIAKEIRGVMRMSSANM 1066 (1283)
T ss_pred hheeccceeeecCCchhhh----ccccHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999988875 79999999999999988766655433
No 5
>KOG2378|consensus
Probab=100.00 E-value=2.4e-39 Score=351.88 Aligned_cols=389 Identities=20% Similarity=0.339 Sum_probs=294.1
Q ss_pred cccccCHHHHHHHHccc----cCCC--hhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchh
Q psy4663 278 LIKGATLYKLVERLTYH----IYAD--PAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQ 351 (966)
Q Consensus 278 ~IkagTL~kLIe~Lt~~----~~~D--~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq 351 (966)
.|.+||-+|++|+|... ...| ..|++.|++||+.|++..+|...|...|....-..+..+.. .. .-+
T Consensus 69 tVmsGtpEKILE~lLe~~lda~~dd~tdt~l~DFilth~vFMp~~~lC~aL~~hy~~~p~~g~e~~~~-~~------r~K 141 (573)
T KOG2378|consen 69 TVMSGTPEKILEHLLETRLDALGDDITDTFLEDFILTHDVFMPDNQLCNALLSHYHATPYQGTEQEIT-VV------RCK 141 (573)
T ss_pred EEecCCHHHHHHHHHhhchhhhccchHHHHHHHHHHHhhhccCcHHHHHHHHHHhccCcCCCchhhhh-hH------hHH
Confidence 67899999999999853 1222 46999999999999999999999999998765444322111 11 124
Q ss_pred hHHHHHHHHHhhhcccccccCHHHHHHHHHHHHHhhcc-----chhhhhhhhhhhh------------------------
Q psy4663 352 FRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGK-----SMRKWVDSVSKVI------------------------ 402 (966)
Q Consensus 352 ~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~~~~-----~~~k~~~~l~k~l------------------------ 402 (966)
.||+.++.+|+..+..-|..|+....-|+++...+..+ .+.++.+.+..+.
T Consensus 142 r~vl~lv~qw~aly~~~l~ed~va~~fl~~ly~~V~dD~~~~~l~E~~l~~~~~i~~~~~~~~~~pqkk~k~L~~~f~~~ 221 (573)
T KOG2378|consen 142 RRVLRLVSQWCALYGDLLQEDPVANSFLEELYCLVIDDRRLYGLREDILERIQSIRLSTRENNQSPQKKHKALFLQFGVL 221 (573)
T ss_pred HHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHhccccccccChhhhcchHHHhccch
Confidence 68999999999998766666664444344443322111 0111111111100
Q ss_pred --------------------------------------------hcccCchh---------hhhhhccccCC-CC-CC--
Q psy4663 403 --------------------------------------------FRKTDPLE---------LQKQIKFAFDR-SP-PP-- 425 (966)
Q Consensus 403 --------------------------------------------~r~~~~~~---------~~~~~~~~~~~-~~-p~-- 425 (966)
.++.+-.+ .+....+..+. .. ..
T Consensus 222 d~~~tr~~v~~sDev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~seel~LV~v~s~GEkv~lqPnd~~v~tsL~ 301 (573)
T KOG2378|consen 222 DEALTRCPVRGSDEVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEELILVKVSSSGEKVILQPNDRAVFTSLG 301 (573)
T ss_pred hhccccCCccCCCeeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccceeEEEEccCCceeeecCCcceeeeeec
Confidence 00000000 00000000000 00 00
Q ss_pred ccccc------------cCCc------ccccccccCHHHHHHhhhHHHHHHhccCCccccccccccC-CCCCCCChhHHH
Q psy4663 426 IEWHL------------KCSE------EEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTK-SNKEEKSPNLLK 486 (966)
Q Consensus 426 i~~~~------------~~~~------~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k-~~k~~~spni~~ 486 (966)
+..++ ..+. ....|.-+++.++|.|||++||+||+.|+-.|++.+.... .....++-|+..
T Consensus 302 ln~rLfv~~re~~~~LvP~peq~gpt~g~~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleL 381 (573)
T KOG2378|consen 302 LNSRLFVVNREEIDLLVPLPEQEGPTPGSSILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLEL 381 (573)
T ss_pred ccceEEEEchHhhhhcCCChhhcCCCCCcceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHH
Confidence 00000 0000 1123556899999999999999999999999999998873 333346779999
Q ss_pred HHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHH
Q psy4663 487 IIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVE 566 (966)
Q Consensus 487 ~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~ 566 (966)
+..+||.+..||+++|+.+..+..|+.+++|||+||..|++..|.|+++||+.||++.+|+||..||+.++.+.++.|++
T Consensus 382 l~~R~neVq~wv~tei~lc~ql~kr~qllkkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~ 461 (573)
T KOG2378|consen 382 LLRRFNEVQHWVATEILLCQQLGKRCQLLKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSE 461 (573)
T ss_pred HHHHHhhchhhhhchhhhhcchhHHHHHHHHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc--cchhHHHHHHHHHccCCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCCCC
Q psy4663 567 LREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCL 644 (966)
Q Consensus 567 L~~l--~~~n~~~yR~~l~~~~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~ 644 (966)
+.++ ...|++.||...++..+|.|||+...|+|++|+++||.++++ |+|||+|++++++++..+++|.+++++-
T Consensus 462 ~enl~dP~~nhr~yR~l~~km~pp~ipf~PlllkD~tf~heGnkt~v~----glVNfEKmhmiA~~~Rt~r~cRS~p~~~ 537 (573)
T KOG2378|consen 462 LENLLDPCRNHRTYRLLSSKMSPPYIPFMPLLLKDLTFIHEGNKTFVD----GLVNFEKMHMIAKTARTLRHCRSQPLNP 537 (573)
T ss_pred HHhcCCchhhhHHHHHHHHhcCCCCCCccchhhhhceeeccchHHHHh----cchhHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9998 678999999999999999999999999999999999999986 6999999999999999999999999884
Q ss_pred CC---chHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCC
Q psy4663 645 SV---EPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRY 683 (966)
Q Consensus 645 ~~---~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~ 683 (966)
.. ..+.++|++++..+++ +..|+++|.++|||.
T Consensus 538 ~a~~~h~e~rSyVrql~VIDn------Q~~L~qLS~~lEpr~ 573 (573)
T KOG2378|consen 538 GAPHEHQETRSYVRQLRVIDN------QRKLSQLSYELEPRS 573 (573)
T ss_pred CCcccchhHHHHHhhHeeecc------HHHHHHHhhhcCCCC
Confidence 32 3578999999988764 356999999999984
No 6
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=2.5e-40 Score=342.77 Aligned_cols=184 Identities=43% Similarity=0.816 Sum_probs=169.1
Q ss_pred cccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCC-CChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHH
Q psy4663 440 LVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEE-KSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRA 518 (966)
Q Consensus 440 l~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~-~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kf 518 (966)
+++++.+||+|||++|+++|++|.+.||+...|.+.+... .++||.+++++||.+++||+.+||.+.+.++|+++|++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5799999999999999999999999999999998854332 479999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHccCC-CCccchhH
Q psy4663 519 IEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSINP-PCVPFFGM 595 (966)
Q Consensus 519 I~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~~~-P~IPflGv 595 (966)
|+||.+|+++|||||+|||++||++++|.||++||+.|+.+.++.+++|+.+ ..+||++||++++++++ |||||||+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~ 160 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGI 160 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHH
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHH
Confidence 9999999999999999999999999999999999999999999999999998 57899999999998886 99999999
Q ss_pred HHhhhhhhhhcCCCCCCCCCCccccHHHhhh
Q psy4663 596 YLTNILHIEEGNPDYLPNSNEELINFSKRRR 626 (966)
Q Consensus 596 ~L~DL~~i~egnpd~i~~~~~~lINf~K~r~ 626 (966)
||+||+++++|+++++++ ++|||.|+|+
T Consensus 161 ~l~dl~~~~~~~~~~~~~---~liN~~K~r~ 188 (188)
T PF00617_consen 161 FLKDLIFIEEGNPDFIDD---GLINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHS-SECTT---TCEEHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCC---ccCCcccccC
Confidence 999999999999999986 6999999985
No 7
>KOG3541|consensus
Probab=100.00 E-value=1.8e-32 Score=296.01 Aligned_cols=389 Identities=18% Similarity=0.187 Sum_probs=271.6
Q ss_pred ccccccCHHHHHHHHcc--ccCCCh--hHHHHHhhhcccccChHHHHHHHHHHhCCCCCC----CC--cHHHHHHhhhhc
Q psy4663 277 PLIKGATLYKLVERLTY--HIYADP--AFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQ----GT--VREDLKKFRKEY 346 (966)
Q Consensus 277 ~~IkagTL~kLIe~Lt~--~~~~D~--~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~----~~--~~~~~k~~~~~~ 346 (966)
..+..|+.++++.||+. +.+.|. -|+..|+..-|+|+.|++++..+.+.- +...+ +. ......-+-.-.
T Consensus 24 g~~~sgsrda~~~hlvptrd~~~dr~~c~I~S~~~ssd~~~~p~d~la~vgq~~-i~~ke~~~~g~~~l~aa~~~~f~l~ 102 (477)
T KOG3541|consen 24 GQKSSGSRDADKCHLVPTRDRRPDRRRCYIFSNLSSSDSFSAPHDLLAEVGQSG-IDSKEALAGGGAGLQAAQGGIFSLD 102 (477)
T ss_pred ccccccccccchhhcCCccccCCccceeecccccccccccCCcHHHHHHHHhcc-cCchhhhcCCCcchhhhhhhhhccC
Confidence 35678999999999983 356787 788899999999999999996665432 11111 10 000000000000
Q ss_pred ccchhhHHHHHHHHHhhhcccccccCHHHHHHHHHHHH----Hhhcc--chhhhhhhhhhhhhcccCc-----hhhhhhh
Q psy4663 347 VQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLE----TINGK--SMRKWVDSVSKVIFRKTDP-----LELQKQI 415 (966)
Q Consensus 347 ~~~iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~----~~~~~--~~~k~~~~l~k~l~r~~~~-----~~~~~~~ 415 (966)
....| ..+..|.++++|||.. ..++..+.+... ...+. +.....+++ ++.+... ++.+...
T Consensus 103 a~~hq----rl~~ew~~nipydf~h-e~~~~el~~l~~~r~t~~l~t~~sv~~~~~ql---~q~klp~~r~~rSQl~~nl 174 (477)
T KOG3541|consen 103 AGHHQ----RLLAEWGGNIPYDFRH-EAEQLELYDLEMGRQTLELGTTISVGPKIEQL---VQYKLPKNRHKRSQLDINL 174 (477)
T ss_pred ChHHH----HHHHHHhhcCCCchhh-HHHHHHHHHHHhhhHHHhhhccccccccHHHH---HHhhcccchhhHhHhhHHH
Confidence 11111 4788999999999974 445555555332 11110 011111111 1111000 0000000
Q ss_pred ccccCCCCCC-ccccccCC------cccccccccCHHHHHHhhhHHHHHHhccCCccccccccccCCC------------
Q psy4663 416 KFAFDRSPPP-IEWHLKCS------EEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSN------------ 476 (966)
Q Consensus 416 ~~~~~~~~p~-i~~~~~~~------~~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~------------ 476 (966)
......+... ....+... .+.+--.+.++.++|+|||.|++..|..|...||+..+-+...
T Consensus 175 l~kl~~~~~a~~q~~i~~~kpl~a~~~~ll~~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~~~~l~ 254 (477)
T KOG3541|consen 175 LSKLLGSGGAMYQNGIIVSKPLAALIETLLPKCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESLVGLLA 254 (477)
T ss_pred HHHhhcCCcccccccccccCCchHHHhhhhhccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHhhhhhh
Confidence 0000000000 00000000 0222334689999999999999999999999998865432220
Q ss_pred -CCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhh
Q psy4663 477 -KEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQA 555 (966)
Q Consensus 477 -k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ 555 (966)
+....-.+.+|+.|||+|+..++.+||....-+.|++++++||++|.+|.++||||++|||+.||+-++|.|||+||..
T Consensus 255 ~k~~~~ysie~y~~wfn~Lsa~~Atevlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~k 334 (477)
T KOG3541|consen 255 MKFPYDYSIERYMSWFNHLSALCATEVLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIK 334 (477)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHH
Confidence 1122346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhccchhHHHHHHHHHcc-----------CCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHh
Q psy4663 556 LPARLENALVELRELGNDHFRKYQERLRSI-----------NPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKR 624 (966)
Q Consensus 556 ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~-----------~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~ 624 (966)
|.......++.-.+ ...||.+||.+++.. ..-.|||+.++|+|+.++.++.+.++.| |.|||.|+
T Consensus 335 v~taK~e~lehqmd-ps~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~N---ghinf~k~ 410 (477)
T KOG3541|consen 335 VRTAKFEALEHQMD-PSSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPN---GHINFLKF 410 (477)
T ss_pred HHHHHHHHHHhcCC-chhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCC---chhHHHHH
Confidence 97655555443322 568999999888743 2457999999999999999999999998 99999999
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCCcC
Q psy4663 625 RRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAK 685 (966)
Q Consensus 625 r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~~~ 685 (966)
..|...+.++..|+.....|..++++++|+--... ++| +.++.+|+++||++..
T Consensus 411 ~~i~~qlr~v~~W~~v~c~fek~p~v~sylliaev---lse----~alm~~sfe~epPen~ 464 (477)
T KOG3541|consen 411 VGIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEV---LSE----PALMRASFESEPPENI 464 (477)
T ss_pred HhHHhhhhhhhhhhcccchHhhCchHHhHHhhhhh---ccc----chhhhheecccCCcch
Confidence 99999999999999999999999999999975543 333 6799999999998763
No 8
>KOG3417|consensus
Probab=99.96 E-value=6.1e-31 Score=328.04 Aligned_cols=472 Identities=21% Similarity=0.297 Sum_probs=335.5
Q ss_pred CccccCCCCCCCccccccc-CCCCCcccccccCHHHHHHHHccccCCChhHHHHHhhhcccccChHHHHHHHHHHhCCCC
Q psy4663 252 ELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPE 330 (966)
Q Consensus 252 ~~~~f~~~d~~~~iv~e~~-~~~~~v~~IkagTL~kLIe~Lt~~~~~D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~ 330 (966)
+.+.|..++...++.+.+. +.+.++...+++|+..+.+.+......+...+..++.+...|++.++++...+..|....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 86 (840)
T KOG3417|consen 7 SKESFSVPDHALTLEFIDRLESTKSNLSSPSGSLESVLENIDTLANPDPRSQSSSLPTNDPNRTLQALASVQQESFDLDG 86 (840)
T ss_pred cCCCCCCcchhcchhhhhhhhcccccccccCCcccccccccCcccCcchhhhhccCCcCCCcccccchhhccccccCccc
Confidence 3456677777666666554 334567788999999999999887888999999999999999999999999999998765
Q ss_pred CCCCc------------------HHHHHHh----h---hhcccchhhHHHHHHHHHhhhcccccccCHHHHHHHHHHHHH
Q psy4663 331 FQGTV------------------REDLKKF----R---KEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLET 385 (966)
Q Consensus 331 ~~~~~------------------~~~~k~~----~---~~~~~~iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~ 385 (966)
+.... ..+...+ + ......++.-.+.++..|+..++..|...+.+.+.....-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (840)
T KOG3417|consen 87 PVRTSVKSLKSIYVNSHRYSVKSLRLFQHLLTVLQQSENSPSNLLREESCKSVPEWIEAFPLTFKESPQLNKSTTELNFL 166 (840)
T ss_pred ccccccccccccccccceecccccchhhhhhcccccCcCCccccccccccchhhhhhhcCCccccccHHHHhHHhhhhhh
Confidence 43210 0000000 0 011122444567778888888887776554444333222111
Q ss_pred hhccchhhhhhhhhhhhhcccCchhhhhhhccccCCCCCCccc-cccCCcccccccccCHHHHHHhhhH-HHHHHhccCC
Q psy4663 386 INGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEW-HLKCSEEEWNILVLHPVEIARQLTL-LESEYYRAVK 463 (966)
Q Consensus 386 ~~~~~~~k~~~~l~k~l~r~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~~~ll~~~p~eiA~QLTl-id~~lF~~I~ 463 (966)
.....+... ......... ..+...... ...+.. ........|++++..+.++|+|+|. +|...|++|.
T Consensus 167 ~~~~~~~~~------~~~~~~~s~---~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~e~~~~lt~lle~~~~~~iq 236 (840)
T KOG3417|consen 167 SLAPDHEES------SVLLDSSSL---PSIRYSRNS-TQRTSSPIKKLDARIFDFLRLTPRELSEQLTSLLESPDFRKIQ 236 (840)
T ss_pred hhccccchh------hcccccccc---cccchhhhc-cccccccccchhheeeeccccchhhhccccccccccccccccC
Confidence 000000000 000000000 000000000 000000 0111236788999999999999996 9999999999
Q ss_pred ccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhcc
Q psy4663 464 PSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGS 543 (966)
Q Consensus 464 p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~s 543 (966)
+.|++++.|.+.++...+||+.+++.++|.++.||..+|+..+.+++|++++.++|++|.++.+++|||++|++++|+++
T Consensus 237 ~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~~~~~~L~~a~~~~el~n~~~~~~~v~~~~~ 316 (840)
T KOG3417|consen 237 PFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAEVILHFLEVAAKLSELNNLNSLMEVVSGLQS 316 (840)
T ss_pred HHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHHhhHHHHHHhhhhhhccccccHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHccCC-CCccchhHHHhh-hhhhhhcCCCCCCCCCCccc
Q psy4663 544 ASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSINP-PCVPFFGMYLTN-ILHIEEGNPDYLPNSNEELI 619 (966)
Q Consensus 544 s~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~~~-P~IPflGv~L~D-L~~i~egnpd~i~~~~~~lI 619 (966)
++|+||++||+.+..+..+.+..+.++ ..+||++||..+..++. +||||+|+||.| ++.++++++++....+...+
T Consensus 317 s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l~d~~~~l~~~~p~~~~~~~~~e~ 396 (840)
T KOG3417|consen 317 SPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCIPILGVYLLDSLVKLNEALPTKLLRIGEREL 396 (840)
T ss_pred chhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCccccccccccHHHHHhhhhcCCccccccccccc
Confidence 999999999999998555555555444 45699999999999998 999999999999 99999999998863234589
Q ss_pred cHHHhhhHHHHHHHHHHhhcCCCCCCCchHHHH--HHHhhCCCCCCChhhhhhHHHHhhhhcccCCcCCC-----CCCCC
Q psy4663 620 NFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRR--FLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLR-----KDIPR 692 (966)
Q Consensus 620 Nf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~--~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~~~~~-----p~~p~ 692 (966)
+|.|++.+++++.+|+.+|+..|+-..+..... ++.+...+ ...+..++|++|++|+.+||+....+ +..+.
T Consensus 397 ~~~~~~~~~~i~~elq~l~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~d~l~~~sl~~ep~~~~~~~~~~~~~~~~ 475 (840)
T KOG3417|consen 397 SFSKLKVLLEIISELQDLQNKELHAPLEKVDKGTPLISSNLDL-EELERITEDALYEESLLLEPLALSNPTPPGKESKPD 475 (840)
T ss_pred cchhhhHHHHHHHHHHHHhccccccchhhhcCccccccccccH-HHHHhcccccccccchhcCcccccCCCCCccccCCC
Confidence 999999999999999999998874444332222 33222222 12244567999999999999776543 34455
Q ss_pred CCCCcccCCCccccccCcccccCCCcc----cccccCCCCCCCCCC
Q psy4663 693 RWPNLSLKSPGIKASKNYMARNNLPAL----TVNKITGPKNSPLSE 734 (966)
Q Consensus 693 k~~~~~~~~~gv~p~~~~~~~~~~p~~----l~~~~~~~~~~~~~~ 734 (966)
+....+.|+.+|.+..+.....+|... +-...+...+..+.+
T Consensus 476 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 521 (840)
T KOG3417|consen 476 VSVKVVRSASLVSPKTSPALKFDHIRLNTDSLFVHSLELFYILIKH 521 (840)
T ss_pred CCccccccccccccCCcccccceeecccccccccchhhhhhhHHHH
Confidence 545677888888887777554444333 333345555555555
No 9
>KOG4424|consensus
Probab=99.94 E-value=2.4e-26 Score=258.74 Aligned_cols=194 Identities=19% Similarity=0.322 Sum_probs=166.4
Q ss_pred hhHHHHHh----------hccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy4663 3 GFKEAVKY----------YLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNG 71 (966)
Q Consensus 3 ~f~~~vk~----------~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~ 71 (966)
.|+.+|.- .|.++||.|||||++|.||||+++++++.. +|+.+++.|++.|...|.|+|.++
T Consensus 171 ~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai------- 243 (623)
T KOG4424|consen 171 QFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAI------- 243 (623)
T ss_pred HHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHH-------
Confidence 46666654 599999999999999999999776666555 899999999999999999999999
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCC
Q psy4663 72 RDTGIRAYNRLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR 151 (966)
Q Consensus 72 ~~~~~~~~~~~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~ 151 (966)
++.|++++|.|+|.++.| + .||+.++|+||+||.+.|++..++ ..+|||+|||||+++|||++.+
T Consensus 244 -----------~k~E~~~kLlevqe~LG~-e-~dIV~PsreLiKEG~l~Kis~k~~-~~qeRylfLFNd~~lyc~~r~~- 308 (623)
T KOG4424|consen 244 -----------TKMERLQKLLEVQEQLGN-E-EDIVSPSRELIKEGQLQKISAKNG-TTQERYLFLFNDILLYCKPRKR- 308 (623)
T ss_pred -----------HHHHHHHHHHHHHHHhCC-C-ccccCcHHHHhhccceeeeeccCC-CcceeEEEEehhHHHhhhhhhh-
Confidence 888999999999999977 4 489999999999999999976644 4589999999999999998643
Q ss_pred cccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 152 TSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 152 ~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
+ .+.+|....++.+.++.|.+.. .+++.+.|.+.++ +.++.|+|.|.++|+.|+++|...+.+-...
T Consensus 309 --~--------~~~k~~~r~~~s~~~~~v~~~~-~~~~~~tF~~~G~-~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 309 --L--------PGSKYEVRARCSISHMQVQEDD-NEELPHTFILTGK-KRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred --c--------ccceeccceeeccCcchhcccc-cccCCceEEEecc-cceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 1 4468999999999999887544 4468899999997 6679999999999999999998866655543
No 10
>KOG2996|consensus
Probab=99.93 E-value=1.9e-26 Score=256.74 Aligned_cols=184 Identities=16% Similarity=0.327 Sum_probs=151.0
Q ss_pred HHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 8 VKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 8 vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
-||.|.+||.+||||++|||||||||.|||.+..+.++|++|+++|++|+..||++. |.+|+
T Consensus 321 gkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~ek~~LkeAleaM~Dla~yiNEvk------------------RD~et 382 (865)
T KOG2996|consen 321 GKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASEKRNLKEALEAMEDLAQYINEVK------------------RDNET 382 (865)
T ss_pred CceeeceeeeeeHHHHHHHHHHHHHHHHhcccCChhhhHHHHHHHHHHHHHHHhHhh------------------cchHH
Confidence 368899999999999999999999999999998666799999999999999988777 88899
Q ss_pred HHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCce
Q psy4663 88 IEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEY 167 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y 167 (966)
+++|.|+|.+|++.+.+ +. .+|+--.+|++...+. .++.+++||+||||+++|+||+ .|..|
T Consensus 383 lr~I~efq~SIenL~~p-l~-~~GRpkiDGElki~s~-~~~tkqdRyiFLfDkvviVCKr---------------kG~sy 444 (865)
T KOG2996|consen 383 LRVIDEFQLSIENLSQP-LH-DFGRPKIDGELKITST-QAHTKQDRYIFLFDKVVIVCKR---------------KGDSY 444 (865)
T ss_pred HHHHHHHHHhHHhhcch-HH-HhCCCCcCceEEEeeh-hcCCccceEEeEecceEEEeec---------------cCcch
Confidence 99999999999998864 22 2566667899865543 3445689999999999999999 45678
Q ss_pred EEeEEEeeccceEEeCCC--CCC-------CcceEEEE-eCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 168 RLKERFFIRRIEILDLPD--SDD-------YKNAFQIV-PRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 168 ~~k~~i~l~~~~I~d~~d--~~~-------~~naF~I~-~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
.+|+.+.+....+.|..- .+. +.++|-|+ ..+...++|+|||.+.|++||+++.+..++.
T Consensus 445 ~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi 514 (865)
T KOG2996|consen 445 ELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNI 514 (865)
T ss_pred hHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcC
Confidence 888888888887776542 121 45677766 5555569999999999999999998855443
No 11
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.93 E-value=1e-25 Score=211.38 Aligned_cols=112 Identities=51% Similarity=0.902 Sum_probs=100.3
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
|+|||+||.|+|++.+. +..++|||||||++|||||++..+.+++ |..++.|+||++++|+++.|.|.+|++++
T Consensus 1 ~~elI~EG~L~ki~~~~-~~~q~R~~FLFd~~Li~CK~~~~~~~~~-----g~~~~~y~~k~~~~l~~~~V~d~~d~~~~ 74 (112)
T cd01261 1 CNEFIMEGTLTRVGPSK-KAKHERHVFLFDGLMVLCKSNHGQPRLP-----GASSAEYRLKEKFFMRKVDINDKPDSSEY 74 (112)
T ss_pred CccccccCcEEEEeccc-CCcceEEEEEecCeEEEEEeccCccccc-----ccccceEEEEEEEeeeeeEEEEcCCCccc
Confidence 89999999999997544 4457999999999999999976555555 55667999999999999999999999999
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
+|+|+|.+.++++++|+|+|+|||.+||++|.++++++
T Consensus 75 knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~~ 112 (112)
T cd01261 75 KNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTKS 112 (112)
T ss_pred CceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcCC
Confidence 99999999877789999999999999999999998875
No 12
>KOG3518|consensus
Probab=99.92 E-value=5.4e-26 Score=239.46 Aligned_cols=177 Identities=22% Similarity=0.382 Sum_probs=153.8
Q ss_pred HHHHhhc--cccccchhhhhHhHHHHHHHHHccCCCC---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhh
Q psy4663 6 EAVKYYL--PKLFLHPLWHCFLYFDYIRILRGLSPDK---EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYN 80 (966)
Q Consensus 6 ~~vk~~L--~~lLl~PVQRi~kY~lLLk~L~k~t~~~---~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~ 80 (966)
||+++.| .+|||||||||+||||+|.+++||.+.. +++..+++|.+.|...+++|||..
T Consensus 242 ~al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indek---------------- 305 (521)
T KOG3518|consen 242 EALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEK---------------- 305 (521)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchh----------------
Confidence 5777765 5999999999999999999999997655 788899999999999999998887
Q ss_pred hhhHHHHHHHHHHHhhhccCCcc-----CCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccc
Q psy4663 81 RLKRQQAIEKTNELSKTVDGWTS-----VDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVS 155 (966)
Q Consensus 81 ~~r~~e~l~kl~eiQ~~I~gw~g-----~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~ 155 (966)
++.|+++++.|||+.+..|.| .|+. .+|+|+.||+|... |++ .+|.+||||.+||++|+
T Consensus 306 --kkaeh~erlgeiqs~lqkwkadeiqi~dls-aygdllleatfr~a--gak---~~rllflfdellli~kk-------- 369 (521)
T KOG3518|consen 306 --KKAEHAERLGEIQSLLQKWKADEIQIPDLS-AYGDLLLEATFRIA--GAK---NERLLFLFDELLLITKK-------- 369 (521)
T ss_pred --HHHHHHHHHHHHHHHHHhcccccccCCchh-hhHHHHHHHHHHHh--ccc---ccchHHHHHhHHhheee--------
Confidence 889999999999999999999 3444 28999999999876 454 49999999999999998
Q ss_pred cccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCcc--EEEEeCCchhhhhhHHHHHH
Q psy4663 156 VTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSP--VILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 156 ~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~--~~l~aks~eeK~~W~~~L~~ 222 (966)
++..|.+|..|.+.++++++..-.++ .-+|++.+.++.+ ++|.|+|.|+|+.||.+|++
T Consensus 370 -------r~anf~~k~~ilc~nlmlne~icpee-plsfqv~~fdnpkaq~~fma~sme~kr~wm~elkr 430 (521)
T KOG3518|consen 370 -------RDANFTCKAHILCGNLMLNEVICPEE-PLSFQVFHFDNPKAQHTFMAKSMEDKRLWMLELKR 430 (521)
T ss_pred -------cCCceeeehhhhccchhhheeccCCC-CceeEEEecCCcchhhhhhhhhhHHHHHHHHHHHH
Confidence 45689999999999999988764322 3369999888876 99999999999999999965
No 13
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.85 E-value=4.3e-21 Score=177.38 Aligned_cols=98 Identities=24% Similarity=0.425 Sum_probs=84.9
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC---
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD--- 188 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~--- 188 (966)
|||++|++++++. .+.+.++|++||||++|||||+... .++.|.|||+|+|++++|+|.+|+++
T Consensus 1 eli~~Gel~~~s~-~~g~~q~R~~FLFD~~LI~CKkd~~------------r~~~~~yKgri~l~~~~I~d~~Dg~~~~~ 67 (109)
T cd01224 1 ELFLQGEATRQKQ-NKGWNSSRVLFLFDHQMVLCKKDLI------------RRDHLYYKGRIDLDRCEVVNIRDGKMFSS 67 (109)
T ss_pred CceEeeeEEEEec-ccCCcccEEEEEecceEEEEecccc------------cCCcEEEEEEEEcccEEEEECCCCccccC
Confidence 6899999999963 3334579999999999999999654 45789999999999999999998753
Q ss_pred ---CcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHH
Q psy4663 189 ---YKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 189 ---~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~ 222 (966)
++|||+|++.+. +.|+|+|+|+|+|.+||++|..
T Consensus 68 ~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 68 GHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred CceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 599999998874 4599999999999999999954
No 14
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.82 E-value=6.5e-20 Score=170.54 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=89.1
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
+|+||+||.|+|++ +++.++||||||||+||||+.. ..+.+|++++.++|++|.|++..|++.+
T Consensus 1 gR~li~eG~L~K~~---rk~~~~R~ffLFnD~LvY~~~~-------------~~~~~~~~~~~i~L~~~~v~~~~d~~~~ 64 (104)
T cd01218 1 GRVLVGEGVLTKMC---RKKPKQRQFFLFNDILVYGNIV-------------ISKKKYNKQHILPLEGVQVESIEDDGIE 64 (104)
T ss_pred CCEEEecCcEEEee---cCCCceEEEEEecCEEEEEEee-------------cCCceeeEeeEEEccceEEEecCCcccc
Confidence 48999999999995 4556799999999999999872 1345799999999999999999998889
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
+|+|.|.+. +++|+|+|.|++||.+||++|..+....
T Consensus 65 ~n~f~I~~~-~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 65 RNGWIIKTP-TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred cceEEEecC-CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 999999998 7799999999999999999998866543
No 15
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.81 E-value=1.4e-19 Score=167.58 Aligned_cols=98 Identities=26% Similarity=0.422 Sum_probs=85.7
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcc
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKN 191 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~n 191 (966)
+||+||.|+|+++ +..++||||||+|+||||++... .+++|++++.++|++|.|.+.+|..+..|
T Consensus 1 ~~ikEG~L~K~~~---k~~~~R~~FLFnD~LlY~~~~~~------------~~~~y~~~~~i~L~~~~V~~~~~~~~~~~ 65 (99)
T cd01220 1 EFIRQGCLLKLSK---KGLQQRMFFLFSDLLLYTSKSPT------------DQNSFRILGHLPLRGMLTEESEHEWGVPH 65 (99)
T ss_pred CeeeEEEEEEEeC---CCCceEEEEEccceEEEEEeecC------------CCceEEEEEEEEcCceEEeeccCCcCCce
Confidence 6999999999953 34579999999999999988422 34689999999999999999988767899
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+|+|.+. +++|+|+|+|++||.+||++|..++.
T Consensus 66 ~F~I~~~-~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 66 CFTIFGG-QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eEEEEcC-CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 9999987 77899999999999999999987653
No 16
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=99.79 E-value=1.2e-19 Score=170.16 Aligned_cols=102 Identities=46% Similarity=0.762 Sum_probs=80.6
Q ss_pred ccccCHHHHHHHHccc-cCCChhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHH
Q psy4663 279 IKGATLYKLVERLTYH-IYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNV 357 (966)
Q Consensus 279 IkagTL~kLIe~Lt~~-~~~D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~v 357 (966)
|+|||+++||++||.. ...|..|+++||+|||+|+||.+||++|++||+...+......+ .+..+....+|.||+++
T Consensus 2 I~~gtl~~Li~~L~~~~~~~d~~f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~--~~~~~~~~~i~~rv~~~ 79 (104)
T PF00618_consen 2 IKAGTLEKLIERLTSSFNSDDEEFVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDE--SWDQDSQEPIRLRVLNV 79 (104)
T ss_dssp EEEE-HHHHHHHHCHC-SS-HHHHHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHH--T-HHHHHHHHHHHHHHH
T ss_pred eeeeCHHHHHHHHhcccccCCHHHHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccc--hhhhhhhHHHHHHHHHH
Confidence 7999999999999987 67789999999999999999999999999999876655432221 23334445689999999
Q ss_pred HHHHhhhcccccccCHHHHHHHHHH
Q psy4663 358 LRHWVDHHFYDFEQDAHLLEQLKLF 382 (966)
Q Consensus 358 L~~Wi~~~~~DF~~d~~ll~~L~~F 382 (966)
|+.||++||+||..|+.++++|++|
T Consensus 80 l~~Wi~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 80 LKYWIENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHHHHHHCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHChHhhCCCHHHHHHHHcC
Confidence 9999999999999988899999887
No 17
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=99.78 E-value=6.2e-19 Score=171.47 Aligned_cols=121 Identities=43% Similarity=0.602 Sum_probs=98.2
Q ss_pred ccccccCHHHHHHHHccccC-CChhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHH
Q psy4663 277 PLIKGATLYKLVERLTYHIY-ADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVL 355 (966)
Q Consensus 277 ~~IkagTL~kLIe~Lt~~~~-~D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl 355 (966)
..|+|||+++||++||.+.. .|..|+.+||+|||+||||.+||++|++||+...+.. +. .++.....+|.||+
T Consensus 3 ~~i~~gtl~~Li~~L~~~~~~~d~~f~~~Flltyr~F~tp~~ll~~L~~rf~~~~~~~-----~~-~~~~~~~~~~~rv~ 76 (127)
T smart00229 3 GLIKGGTLEKLIEHLTEAFDKADPFFVETFLLTYRSFITTQELLQLLLYRYNAIPPES-----WV-ERKVNPLRVKNRVL 76 (127)
T ss_pred CeeeeecHHHHHHHHcCCCcCCCHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCcHH-----HH-HHHhhHHHHHHHHH
Confidence 36899999999999998765 8999999999999999999999999999999876541 11 11222235889999
Q ss_pred HHHHHHhhhcccccccCHHHHHHHHHHHHHhhccchhhhhhhhhhhhh
Q psy4663 356 NVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIF 403 (966)
Q Consensus 356 ~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~~~~~~~k~~~~l~k~l~ 403 (966)
++|++||+.||+||++++.++..|.+|++.+......++..++.++++
T Consensus 77 ~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 77 NILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred HHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 999999999999999988899999999998765544455555555443
No 18
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=3.2e-18 Score=157.14 Aligned_cols=93 Identities=22% Similarity=0.410 Sum_probs=80.7
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
+|+||+||.|+.+ +.++ +||+||||++|||||+. +++|+||++|.+++++|++..+++
T Consensus 1 ~geLlleg~l~~~--~~~~---eR~vFLFe~~ll~~K~~---------------~~~y~~K~~i~~~~l~i~e~~~~d-- 58 (97)
T cd01222 1 LGDLLLEGRFREH--GGGK---PRLLFLFQTMLLIAKPR---------------GDKYQFKAYIPCKNLMLVEHLPGE-- 58 (97)
T ss_pred CCceeeeceEEee--cCCC---ceEEEEecccEEEEEec---------------CCeeEEEEEEEecceEEecCCCCC--
Confidence 4799999999966 4443 99999999999999983 357999999999999999988865
Q ss_pred cceEEEEeCCCc--cEEEEeCCchhhhhhHHHHHHHh
Q psy4663 190 KNAFQIVPRCGS--PVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 190 ~naF~I~~~~~~--~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
.++|.|.+.++. +++|+|+|.|+|+.||++|.++.
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 588999888654 59999999999999999998754
No 19
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=3.9e-18 Score=159.21 Aligned_cols=100 Identities=21% Similarity=0.463 Sum_probs=83.8
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcc
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKN 191 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~n 191 (966)
|||+||.|+|++++.+ +.++||||||||+|||||.+.. ..+..|+++++|+|++|.|.+.+ +.+.+|
T Consensus 1 e~ikeG~L~K~~~~~~-~~k~RyffLFnd~Ll~~~~~~~-----------~~~~~y~~~~~i~l~~~~v~~~~-~~~~~~ 67 (101)
T cd01219 1 ELLKEGSVLKISSTTE-KTEERYLFLFNDLLLYCVPRKM-----------IGGSKFKVRARIDVSGMQVCEGD-NLERPH 67 (101)
T ss_pred CcccceEEEEEecCCC-CceeEEEEEeCCEEEEEEcccc-----------cCCCcEEEEEEEecccEEEEeCC-CCCcCc
Confidence 6899999999964333 3469999999999999997422 13568999999999999999764 346899
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+|.|.+. +++|+|+|+|++||.+||++|..+..
T Consensus 68 ~F~I~~~-~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 68 SFLVSGK-QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred eEEEecC-CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 9999988 57899999999999999999987653
No 20
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=99.72 E-value=2.2e-17 Score=159.08 Aligned_cols=104 Identities=45% Similarity=0.733 Sum_probs=89.4
Q ss_pred CHHHHHHHHccccC-CChhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHHH
Q psy4663 283 TLYKLVERLTYHIY-ADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHW 361 (966)
Q Consensus 283 TL~kLIe~Lt~~~~-~D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~W 361 (966)
|+++||++||.... .|..|+++||+|||+||||.+||++|++||+.+.++.. +...+..+....+|.||+++|++|
T Consensus 1 tl~~Li~~L~~~~~~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~---~~~~~~~~~~~~~~~~v~~~l~~W 77 (122)
T cd06224 1 TLEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENL---EYNDWDKKKSKPIRLRVLNVLRTW 77 (122)
T ss_pred CHHHHHHHHcCCCccccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998876 89999999999999999999999999999998876542 122233344557899999999999
Q ss_pred hhhcccccccCHHHHHHHHHHHHHhhcc
Q psy4663 362 VDHHFYDFEQDAHLLEQLKLFLETINGK 389 (966)
Q Consensus 362 i~~~~~DF~~d~~ll~~L~~Fl~~~~~~ 389 (966)
|++|++||..|..+++.|.+|++.+...
T Consensus 78 v~~~~~df~~d~~l~~~l~~F~~~~~~~ 105 (122)
T cd06224 78 VENYPYDFFDDEELLELLEEFLNRLVQE 105 (122)
T ss_pred HHhCCCcccccHHHHHHHHHHHHHHccc
Confidence 9999999987899999999999987554
No 21
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.71 E-value=2.3e-17 Score=153.92 Aligned_cols=106 Identities=17% Similarity=0.331 Sum_probs=86.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC--CCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP--DSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~--d~~ 187 (966)
+|+++.+|++.... ..+.+.++||+||||.+||+||++... | ...+|+||+.+.|.+++|++.. |++
T Consensus 1 yGR~~~DGelk~k~-~~~~k~k~RyiFLFDk~lI~CK~~~~~---------~-~~~~Y~~Ke~~~l~~~~I~~~~~~d~~ 69 (116)
T cd01223 1 YGRPLLDGEVRIKA-SEDQKTKLRYIFLFDKAVIVCKALGDN---------T-GDMQYTYKDIHDLADYKIENNPSRDTE 69 (116)
T ss_pred CCccccCCceEEeE-eccCCCceeEEEEecceEEEEEecCCC---------C-CCccEEhHHhhhhheeeeEecCccCcc
Confidence 47889999987543 233445799999999999999986432 1 2468999999999999998765 554
Q ss_pred ----CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 188 ----DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 188 ----~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.++|+|+|...++ ..++|+|+|+|+|.+||++|.+..++
T Consensus 70 ~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 70 GRDTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred cCCcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 5899999998876 55999999999999999999987665
No 22
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.68 E-value=2.1e-16 Score=149.44 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=87.7
Q ss_pred ceEeeeccEEEeecCC--CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC
Q psy4663 111 NEFFREDTLLKLNIGK--KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD 188 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~--~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~ 188 (966)
|+||+||+|+.+.+.. +++.++|++|||+++||+||....+. |++...|.||..|.|++|.+++..+++.
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~--------~~~~~~Y~yK~~ikls~l~l~e~v~gd~ 74 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKK--------QFGNPKYIYKSKLQVSKMGLTEHVEGDP 74 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCC--------CCCceeEEEecceeeeeeEeEEccCCCC
Confidence 6899999999886543 34667999999999999999853211 2345689999999999999999999998
Q ss_pred CcceEEEEeCC--CccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 189 YKNAFQIVPRC--GSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 189 ~~naF~I~~~~--~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
++|++++.... ..+|+|+|.|.|+|+.|+++|.++..
T Consensus 75 ~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 75 CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 88666666553 24699999999999999999988754
No 23
>KOG3523|consensus
Probab=99.64 E-value=1.7e-15 Score=172.06 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=143.9
Q ss_pred hhHHHHHh----------hccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy4663 3 GFKEAVKY----------YLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNG 71 (966)
Q Consensus 3 ~f~~~vk~----------~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~ 71 (966)
+|++++.- .|.+||+-|||||.+|.|||+.+++.|+.. ++|+...+|+.++..|....|+..
T Consensus 370 ~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a------- 442 (695)
T KOG3523|consen 370 AFREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGA------- 442 (695)
T ss_pred HHHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 68888765 488999999999999999999988888776 999999999999988887776666
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHhhhccCCcc--CCCCcccceEeeeccEEEee-cC------CCCCccceEEEeccCce
Q psy4663 72 RDTGIRAYNRLKRQQAIEKTNELSKTVDGWTS--VDIGQCCNEFFREDTLLKLN-IG------KKTESTERVCFLFDGLL 142 (966)
Q Consensus 72 ~~~~~~~~~~~r~~e~l~kl~eiQ~~I~gw~g--~di~~~~~~li~eG~l~ki~-~~------~~~~~~eR~~FLFd~~L 142 (966)
+|.+..+.|..|++.|+=-++ .-|....|-|++.|+|+... .+ .|+....-|+|||+|+|
T Consensus 443 -----------~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~L 511 (695)
T KOG3523|consen 443 -----------RRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLL 511 (695)
T ss_pred -----------HHHHHHHHHHHHHhhccccccceeeeccchhhhhhccccceeecccccchhhcccccceeeeeeeccee
Confidence 666777778888787763255 33455589999999997443 11 23344588999999999
Q ss_pred EEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC------C----CCcceEEEE---eCCCcc--EEEEe
Q psy4663 143 LLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS------D----DYKNAFQIV---PRCGSP--VILIA 207 (966)
Q Consensus 143 l~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~------~----~~~naF~I~---~~~~~~--~~l~a 207 (966)
|+||++ .++.|.+.+.-..+-+.+..++.. . ..+|-|.+. +.++.. +.|.|
T Consensus 512 litk~k--------------~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a 577 (695)
T KOG3523|consen 512 LITKKK--------------SEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSA 577 (695)
T ss_pred eEeeec--------------CCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecC
Confidence 999996 345788888888888888777621 1 135678876 322332 99999
Q ss_pred CCchhhhhhHHHHH
Q psy4663 208 NSPEDKNNWMADLI 221 (966)
Q Consensus 208 ks~eeK~~W~~~L~ 221 (966)
.|..|+++||.+|.
T Consensus 578 ~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 578 ESQSDRQRWISALR 591 (695)
T ss_pred CchHHHHHHHHhcC
Confidence 99999999999883
No 24
>KOG0689|consensus
Probab=99.63 E-value=3.8e-16 Score=177.62 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=142.3
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
+..|.+||++|||||.||+|||++++|.+... .|+..+.+|.+.|..+-.+.++++ .+.
T Consensus 185 ~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~-~~~------------------- 244 (448)
T KOG0689|consen 185 KLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMM-QVG------------------- 244 (448)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhh-ccc-------------------
Confidence 34588999999999999999999999999887 899999999999987777665555 111
Q ss_pred HHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCce
Q psy4663 88 IEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEY 167 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y 167 (966)
.+.|++|....+ |.|++++++.......++ ...|.+|||+.++|+||.... +.....|
T Consensus 245 ---------~l~g~e~~l~~q--G~l~~qd~f~v~~~~~~~-~~~R~vflFe~~v~Fse~~~~----------~~~~~~y 302 (448)
T KOG0689|consen 245 ---------RLQGFEGDLKAQ--GKLRRQDEFDVSHGRAGK-KKDRRVFLFERLVVFSKLRKP----------ESGTETY 302 (448)
T ss_pred ---------hhcccccchHhh--ccccccCccceeeccccc-cchhhhhhhhhhhhhhhhhcC----------CCCCcce
Confidence 256899866665 789999999877654443 469999999999999998542 2245689
Q ss_pred EEeEEEeeccceEEeCCCCCCCcceEEEEeCCC---ccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 168 RLKERFFIRRIEILDLPDSDDYKNAFQIVPRCG---SPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 168 ~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~---~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
.||..|.+.++.++...+++.++ |+|+.+.. ..|+++|.+.++|.+|+.+|.++..+.
T Consensus 303 ~yk~~ik~~~lgle~n~~~s~~r--F~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~~Q 363 (448)
T KOG0689|consen 303 VYKQHIKVNDLGLEENNDNSASR--FEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLWQQ 363 (448)
T ss_pred eeecchhhhheeeeccCCCCCcc--hhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887787 55554432 259999999999999999998876665
No 25
>KOG2070|consensus
Probab=99.62 E-value=5e-16 Score=171.72 Aligned_cols=176 Identities=18% Similarity=0.318 Sum_probs=146.1
Q ss_pred hccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHHH
Q psy4663 11 YLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIE 89 (966)
Q Consensus 11 ~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l~ 89 (966)
+|-.-|.+|+.|+-||..|||||.+|.++. +|+.|++.+..++++++.. |+.+.| ++...++
T Consensus 228 vLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~----Cq~lRk-------------qKEleLq 290 (661)
T KOG2070|consen 228 VLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQ----CQELRK-------------QKELELQ 290 (661)
T ss_pred EEecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH----HHHHHh-------------hhhhhhh
Confidence 366779999999999999999999999999 9999999999999766654 655555 6777777
Q ss_pred HHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEE
Q psy4663 90 KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRL 169 (966)
Q Consensus 90 kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~ 169 (966)
.|.+- |.||+|.|+...++-+.+ |.+....+++..+ +|||.||.+.|++-.-..+ | ..|.|
T Consensus 291 iLt~~---i~~w~g~d~s~lG~iiym-g~v~Vqy~~ad~~--dRy~~LF~~~llflsvs~r---M----------s~fIy 351 (661)
T KOG2070|consen 291 ILTEP---IRNWEGDDISTLGNIIYM-GQVLVQYAGADEK--DRYLLLFPNVLLFLSVSPR---M----------SGFIY 351 (661)
T ss_pred hhccc---ccccccchhhhccceEee-eehhhhhcCcchh--hheeeeccceeeeeEeccc---c----------chhhh
Confidence 77754 899999989876665555 5554443344443 9999999999999866322 3 35899
Q ss_pred eEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 170 KERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 170 k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.|+|++.++-|+..+|++..+|+|+|.+..-..+++.|....+-++|+++|..
T Consensus 352 egKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 352 EGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred ccccccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 99999999999999999999999999988778899999999999999998854
No 26
>KOG3531|consensus
Probab=99.62 E-value=1.6e-16 Score=184.82 Aligned_cols=179 Identities=21% Similarity=0.281 Sum_probs=143.6
Q ss_pred hHHHHHhh--ccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhh
Q psy4663 4 FKEAVKYY--LPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYN 80 (966)
Q Consensus 4 f~~~vk~~--L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~ 80 (966)
|+.....+ |..||++|++|+++|+++|+.|++|...+ +|+.|...+...+......|...+
T Consensus 661 felqkvcyLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m---------------- 724 (1036)
T KOG3531|consen 661 FELQKVCYLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVM---------------- 724 (1036)
T ss_pred HHhhhccccccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccc----------------
Confidence 34444444 45899999999999999999999998765 777776666655533333322111
Q ss_pred hhhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCC
Q psy4663 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPL 160 (966)
Q Consensus 81 ~~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~ 160 (966)
..+++|.|||+.|.|.+ .+++..+|||++|++.|. .+|+.++|+||||+|+|||+.+.-
T Consensus 725 -----~~~e~l~Elkrdl~s~e--~LV~p~rE~ir~g~llK~---skkgLqqrmfFLfsdillytsk~~----------- 783 (1036)
T KOG3531|consen 725 -----IRTEKLRELKRDLASIE--NLVHPGREFIRSGCLLKL---SKKGLQQRMFFLFSDILLYTSKGP----------- 783 (1036)
T ss_pred -----hhHHHHHHHHHhhhccc--cccCcchhhhhcCCchhh---ccccchhhhhhhhhhhheeccCCC-----------
Confidence 12449999999999987 678888999999999998 567778999999999999998731
Q ss_pred CCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 161 GGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 161 g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.....|++.+.+++. |.+++.++.-.+.|+|.|.+. +..+++.|.+.+++.+|+.++.+
T Consensus 784 -~~~~~fri~g~lP~~-l~~en~en~~s~p~~~ti~~~-qk~i~vsast~~~sk~~~~~r~~ 842 (1036)
T KOG3531|consen 784 -DVQKCFRINGDLPLT-LTMENSENEWSVPHCFTISGA-QKQIYVSASTRRESKKWEFDRRK 842 (1036)
T ss_pred -ChhheeEeccCCceE-eeeecccccccCCceEEEecc-ceEEEEeccchhhhhhhhhccch
Confidence 134689999999999 999999998889999999887 77899999999999999987654
No 27
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.58 E-value=1e-14 Score=141.00 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=85.0
Q ss_pred ceEeeeccEEEeecCC---------CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEE
Q psy4663 111 NEFFREDTLLKLNIGK---------KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL 181 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~---------~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~ 181 (966)
|+||++|+|+.+.+.. +.+.++||+|||++++|+||+..... . |.....|.||+.|.|.++.|+
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~------~-~~~~p~Y~yK~~ikls~lglt 73 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENG------E-GEKAPSYSFKQSLKMTAVGIT 73 (133)
T ss_pred CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCC------C-CCcceeEEEeeeEEeeccccc
Confidence 5799999999886422 12457999999999999999863210 0 224558999999999999999
Q ss_pred eCCCCCCCcceEEEEeCCCc-cEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 182 DLPDSDDYKNAFQIVPRCGS-PVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 182 d~~d~~~~~naF~I~~~~~~-~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
+..+++.++ |+|+..+.. .|+|+|+|.|.|+.|+++|.++..+.
T Consensus 74 e~v~gd~~k--Feiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 74 ENVKGDTKK--FEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred ccCCCCccE--EEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 988887665 777766543 49999999999999999998866655
No 28
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=5.8e-15 Score=131.72 Aligned_cols=95 Identities=20% Similarity=0.367 Sum_probs=78.8
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
|+||+||.|++++.+.++ .|+||||+|+|||++-.... |..+.+|.++-.|+|+++.+.+.
T Consensus 1 r~Lv~eg~lvel~~~~rK---~R~~FLFnDlLvc~~ik~~~---------~~k~~kY~~~w~IPL~dl~~~~~------- 61 (96)
T cd01228 1 RQLVKDSFLVELVEGSRK---LRHLFLFTDVLLCAKLKKTS---------RGKHQQYDCKWYIPLADLSFPSE------- 61 (96)
T ss_pred CcccccceeeeehhCCCc---ceEEEeeccEEEEEEeeecc---------CccccccceeEEEEhHHheecch-------
Confidence 579999999999765554 99999999999999853110 22447999999999999999876
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+|.+.+..+++|+|+|.|..||.+||++|..++.
T Consensus 62 -~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~~~ 95 (96)
T cd01228 62 -PFRIHNKNGKSYTFLLSSDYERSEWRESIQKLQK 95 (96)
T ss_pred -hhhccccCCceEEEEecCHHHHHHHHHHHHHHhc
Confidence 3777777678899999999999999999988765
No 29
>KOG3417|consensus
Probab=99.55 E-value=9.3e-15 Score=183.32 Aligned_cols=223 Identities=27% Similarity=0.387 Sum_probs=181.2
Q ss_pred CHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHH
Q psy4663 443 HPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIM 522 (966)
Q Consensus 443 ~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA 522 (966)
...+++.++|+++..++..+...+.+ .|.+...+....+..++..+++.++.|+...|..+.....| ||+++
T Consensus 609 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~ 680 (840)
T KOG3417|consen 609 KSAEIACQLTLLDAILTMEICIPRSL--LWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVA 680 (840)
T ss_pred hHHHHHhhhhhhhhHhhhchhhhhHH--HHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHH
Confidence 67788999999998888777665555 46655556677888899999999999999999888777766 99999
Q ss_pred HHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchh-HHHHHHHHHccCCCCccchhHHHhh
Q psy4663 523 MVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDH-FRKYQERLRSINPPCVPFFGMYLTN 599 (966)
Q Consensus 523 ~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n-~~~yR~~l~~~~~P~IPflGv~L~D 599 (966)
++|..++||.++++|+++|.+++++|+..+|.....+....+..+..+ ...| +..||..++.+.++||||+|++|+|
T Consensus 681 ~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~d 760 (840)
T KOG3417|consen 681 KFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQD 760 (840)
T ss_pred hhhhhhCchhhhhHHHHHhccchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeec
Confidence 999999999999999999999999999999999999888888877766 2344 4455555556889999999999999
Q ss_pred hhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhhc
Q psy4663 600 ILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKI 679 (966)
Q Consensus 600 L~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~i 679 (966)
|+|+++||+|++++ .-.++||.|+..+..++++++.+|-..|.+..+...+..+.... .+ .+..++++++
T Consensus 761 ltf~~~gnpd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~ 830 (840)
T KOG3417|consen 761 LTFVHTGNPDYLDS-VVNHGKFDKRTNIKDIVQEVQKFQYVGYKVNPIIDFQNDINKSL-----RE----EEKWELSLKI 830 (840)
T ss_pred ceeecCCCCCcccc-ccchhHHHHHHHHHHHHHHHHHhcccccccCcchhhhhHHHHHH-----HH----HHHHHHHHhh
Confidence 99999999999964 45788899989999999999999988888887777777765432 22 2356666666
Q ss_pred ccCC
Q psy4663 680 EPRY 683 (966)
Q Consensus 680 EPr~ 683 (966)
-+|+
T Consensus 831 ~~~~ 834 (840)
T KOG3417|consen 831 KPRV 834 (840)
T ss_pred hccc
Confidence 5554
No 30
>KOG4240|consensus
Probab=99.55 E-value=5e-16 Score=187.73 Aligned_cols=177 Identities=16% Similarity=0.274 Sum_probs=139.4
Q ss_pred HHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 8 VKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 8 vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++..+.+||++|||||.||++|||+|++.+ .+...++++|+++|..|-..+||.| ++.
T Consensus 755 l~l~~~S~l~kpvqritkYqlllkell~~c--~e~~~~lkd~l~~ml~v~k~~nd~m-h~~------------------- 812 (1025)
T KOG4240|consen 755 LELSISSYLIKPVQRITKYQLLLKELLKCC--CEGTGDLKDALEVMLSVPKKVNDSM-HLI------------------- 812 (1025)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHhh--hhchHHHHHHHHHHHhhhhhccccc-CHH-------------------
Confidence 344788999999999999999999999943 3788899999999988888888877 111
Q ss_pred HHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCC-CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCc
Q psy4663 88 IEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGK-KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGE 166 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~-~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~ 166 (966)
.|+|++|. +. .-+.||++|.|..|.... .++.+|||+|||+..+|+||+..-. | ...+
T Consensus 813 ---------~~~~~d~n-l~-~lg~~~~q~~f~vw~~k~l~rk~~erhlfl~ei~ivf~K~~~~s---------~-~~~~ 871 (1025)
T KOG4240|consen 813 ---------ALEGYDGN-LD-ELGKLIMQDSFSVWKPKALARKGMERHLFLFEISIVFCKRIEES---------S-ERIK 871 (1025)
T ss_pred ---------HHhhhhhh-HH-HHHHHHhhccceeecHHHHhhhhHHHHHHHHHHHHHHHHHHHhc---------c-CCCc
Confidence 25677762 11 135899999999885432 2356799999999999999985210 1 2457
Q ss_pred eEEeEEEeeccceEEeCCCCCCCcceEEEEeC-CCccEEEEeCCchhhhhhHHHHHHHhhhhhh
Q psy4663 167 YRLKERFFIRRIEILDLPDSDDYKNAFQIVPR-CGSPVILIANSPEDKNNWMADLIMLNTKSMF 229 (966)
Q Consensus 167 y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~-~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~ 229 (966)
|-++++++++.+.|++...+|.++ |+|+.+ +...|++.|++.+.|..|+..|..+..+++.
T Consensus 872 ~~~~~~l~~~e~gite~v~Gd~~k--f~~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~~~ 933 (1025)
T KOG4240|consen 872 YVSKKKLPMSEVGITEHVEGDPCK--FELWVGRTESVIDLKASNHETKQKWVKEIREVLQERTI 933 (1025)
T ss_pred chhhccCCHHhhcchhhcccCceE--EEEeccCCCcceeeecCCcchhhhhccchHHHHHHHHH
Confidence 888888999999999999998888 666533 3556999999999999999999998887743
No 31
>KOG3521|consensus
Probab=99.54 E-value=1.7e-14 Score=164.69 Aligned_cols=180 Identities=21% Similarity=0.394 Sum_probs=128.2
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
+..|-|.|.+|+||+.||.|||+..+|+|.+..++|.+...+++++....+||..+. .++.-
T Consensus 315 RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~d~~e~Eai~aMi~svEsf~~~vN~~l~------------------qrqer 376 (846)
T KOG3521|consen 315 RQKLIDTLSKPMQRLTKYPLLLKAVLKVTTDEREREAISAMIDSVESFTAHVNKELR------------------QRQER 376 (846)
T ss_pred hHHHHHHhhhHHHHhhhhHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hhHHH
Confidence 346899999999999999999999999999999999999888888888888887772 22222
Q ss_pred HHHHHHhhhccCCccC------------------CC-----C---cccceEeeeccEEEeecCCCCCccceEEEeccCce
Q psy4663 89 EKTNELSKTVDGWTSV------------------DI-----G---QCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLL 142 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~------------------di-----~---~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~L 142 (966)
++|..+-..|+|+|-. |+ + ...|.|++||.+.+-. +|..+.+.|+|||.|+|
T Consensus 377 erL~~vm~rIe~ydvVd~~sdevdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKe--gk~sK~DVhcfLfTDll 454 (846)
T KOG3521|consen 377 ERLAAVMRRIEGYDVVDQDSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKE--GKGSKADVHCFLFTDLL 454 (846)
T ss_pred HHHHHHHHhcCcccccCCcHHHHHHHhhhhhhhhccccCCCCCChhhhhhhhhccceeccc--CCCcccceeeeeehhHH
Confidence 3333333444444421 11 1 1148999999998652 33344699999999999
Q ss_pred EEeecCCCCcccccccCCCCCCCce-EEeEEEeeccceEEeCCCCCCCcceEEEEeCC-----CccEEEEeCCchhhhhh
Q psy4663 143 LLCKPNSKRTSVSVTAPLGGNQGEY-RLKERFFIRRIEILDLPDSDDYKNAFQIVPRC-----GSPVILIANSPEDKNNW 216 (966)
Q Consensus 143 l~cK~~~~~~~~~~~~~~g~~~~~y-~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~-----~~~~~l~aks~eeK~~W 216 (966)
|+||+..++. +.. .++--+.|+++.+....|. |+|.+++-. ..-|++.|..+++...|
T Consensus 455 LVcK~v~k~~------------drlKVIRpPll~dklv~q~~~dp----nsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W 518 (846)
T KOG3521|consen 455 LVCKKVQKKA------------DRLKVIRPPLLMDKLVCQYLRDP----NSFLLVHLTEFHTAQAAYTMHCSGPEDTLRW 518 (846)
T ss_pred HHhHHHhhhc------------ccceeeccchhhcceeeeecCCC----CceEEEeechhhhhhhhheeecCChhhHHHH
Confidence 9999864421 112 2344456777777766664 566655332 22499999999999999
Q ss_pred HHHHHHHh
Q psy4663 217 MADLIMLN 224 (966)
Q Consensus 217 ~~~L~~l~ 224 (966)
.+.|.+.+
T Consensus 519 ~D~l~~Aq 526 (846)
T KOG3521|consen 519 TDMLKMAQ 526 (846)
T ss_pred HHHHHHHH
Confidence 99997744
No 32
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.47 E-value=3e-13 Score=123.75 Aligned_cols=96 Identities=16% Similarity=0.341 Sum_probs=82.5
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcce
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNA 192 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~na 192 (966)
+|++|.|..+..+..+-.+.+++|||||+|||+.... ..+|++...++|+++.|.|+.|.+.++|+
T Consensus 2 ~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~--------------~~ky~~~~~~~L~~i~V~ni~D~~~~kNa 67 (100)
T cd01226 2 VILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINA--------------AGKYVMESTYSLNSVAVVNVKDRENAKKV 67 (100)
T ss_pred EEEcCcEEEechhhCCccceEEEEEeccEEEEEEecc--------------cceEEEEEEEehHHeEEEecCCCcCcCce
Confidence 7899999999654444434455999999999998742 24799999999999999999999999999
Q ss_pred EEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 193 FQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 193 F~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
|.|... .++++++|.|+++|.+||+.|...
T Consensus 68 fki~t~-~~s~i~qaes~~~K~eWl~~le~a 97 (100)
T cd01226 68 LKLLIF-PESRIYQCESARIKTEWFEELEQA 97 (100)
T ss_pred EEEEeC-CccEEEEeCCHHHHHHHHHHHHHH
Confidence 999988 567999999999999999999764
No 33
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=1.2e-12 Score=120.65 Aligned_cols=107 Identities=23% Similarity=0.407 Sum_probs=86.2
Q ss_pred CccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceE
Q psy4663 101 WTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEI 180 (966)
Q Consensus 101 w~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I 180 (966)
|+|.++...+....+ +.+.... +......|||++||...|++++...+ ...|+|+|+++|.++.|
T Consensus 1 Weg~~i~~lG~vi~m-S~V~~~~-~~~qe~~eRyLvLFp~~LlilS~s~r-------------~sGf~yqGkLPL~~i~v 65 (111)
T cd01225 1 WEGQDIKTLGNVIHM-SQVAVQY-GAGEEKRERYLVLFPNVLLMLSASPR-------------MSGFIYQGKLPLTGIIV 65 (111)
T ss_pred CCCcchhhcCceEEE-EEEEEec-CCccccceeEEEEcCceEEEEEcCCC-------------ccceEEeeeecccccEE
Confidence 888777764444333 3333322 23334569999999999999998533 23599999999999999
Q ss_pred EeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 181 LDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 181 ~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
+..+|.++.+|||+|.+..-+.++++|.+.+|+++||.+|.+
T Consensus 66 ~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~ 107 (111)
T cd01225 66 TRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNA 107 (111)
T ss_pred echHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHh
Confidence 999999999999999999888999999999999999999976
No 34
>KOG3520|consensus
Probab=99.41 E-value=2e-13 Score=166.74 Aligned_cols=174 Identities=16% Similarity=0.284 Sum_probs=135.0
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
|+-|+++++.-+|||.||+|||+.++|+|.+. .++++|++|++..+.+-.+||..+ +..|+
T Consensus 525 RL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV------------------~~~E~ 586 (1167)
T KOG3520|consen 525 RLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAV------------------KEAEK 586 (1167)
T ss_pred hhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Confidence 44589999999999999999999999999976 999999999999999999998888 55577
Q ss_pred HHHHHHHhhhccC-----------CccCCCCcccceEeeeccEE-EeecCCCCCccceEEEeccCceEEeecCCCCcccc
Q psy4663 88 IEKTNELSKTVDG-----------WTSVDIGQCCNEFFREDTLL-KLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVS 155 (966)
Q Consensus 88 l~kl~eiQ~~I~g-----------w~g~di~~~~~~li~eG~l~-ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~ 155 (966)
.++|+|||+.++- +...|+++ ++||++|.|+ |+ ++.+..+-|+.||+||||+-.++
T Consensus 587 ~~RL~eiq~RlD~~s~~~~~~~~~F~kldLt~--rkLihdG~Ltwk~---~~gk~~dv~vlLLtD~LvlLqeq------- 654 (1167)
T KOG3520|consen 587 KQRLEEIQRRLDAKSLSKYKNGEEFRKLDLTR--RKLIHDGPLTWKT---ARGKTKDVHVLLLTDILVLLQEK------- 654 (1167)
T ss_pred HHHHHHHHHhccchhhhhccccchhhhhhhhh--hheeccCceEEee---ccCchhhhHHHHHHHHHHHhhhc-------
Confidence 8899999999882 22357776 8999999998 65 34445699999999999998663
Q ss_pred cccCCCCCCCceEEeE------EEeeccceEEeCCCCCCCcceEEEEeCCCc-c-EEEEeCCchhhhhhHHHHHH
Q psy4663 156 VTAPLGGNQGEYRLKE------RFFIRRIEILDLPDSDDYKNAFQIVPRCGS-P-VILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 156 ~~~~~g~~~~~y~~k~------~i~l~~~~I~d~~d~~~~~naF~I~~~~~~-~-~~l~aks~eeK~~W~~~L~~ 222 (966)
..+|.|+. -|.|..+-|.++... -+--|.|...+.. . |.|.|.|.+||+.||+.|.+
T Consensus 655 --------D~Kyifksl~~~spVisL~~livRevAtd--~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~ 719 (1167)
T KOG3520|consen 655 --------DQKYIFKSLDKKSPVISLQKLIVREVATD--EKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQD 719 (1167)
T ss_pred --------CceeEeeccccCCCceehHHHHHHHHhcc--ccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHH
Confidence 23566653 345555533333221 2334556555443 3 99999999999999998855
No 35
>KOG1924|consensus
Probab=99.37 E-value=1.7e-12 Score=150.30 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhc-----CCCCCCCchHHHHHHHh
Q psy4663 587 PPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQN-----SPYCLSVEPRIRRFLEN 656 (966)
Q Consensus 587 ~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~-----~~Y~~~~~~~i~~~l~~ 656 (966)
...=|||--+|+.|+.|.+ || .|-=.-+..|-+.|.+|.-... -.|.+..+-++..+|..
T Consensus 398 T~aE~yfLSILQhlllirn---Dy-------~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~ 462 (1102)
T KOG1924|consen 398 TGAEPYFLSILQHLLLIRN---DY-------YIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDK 462 (1102)
T ss_pred ccccchHHHHHHHHHHHhh---hh-------hhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHH
Confidence 5667888888999888876 32 1222333445566667765554 13444334445555543
No 36
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=4.3e-12 Score=121.18 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=77.0
Q ss_pred ceEeeeccEEEeecCC-------CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeC
Q psy4663 111 NEFFREDTLLKLNIGK-------KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDL 183 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~-------~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~ 183 (966)
|-|+++|+|+.+..+. +-..+.||+|||||+|||||++ .+..|.+++....+.++|.++
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK--------------~~~~f~V~dy~~r~~l~V~~~ 66 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKK--------------LGSTFVVFDYAPRSFLRVEKI 66 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEec--------------CCCeEEEEeeccccceEEeec
Confidence 4589999999775321 1235689999999999999985 346899999999999999988
Q ss_pred CCCC----------CCcceEEEE---eCCC--ccEEEEeCCchhhhhhHHHHH
Q psy4663 184 PDSD----------DYKNAFQIV---PRCG--SPVILIANSPEDKNNWMADLI 221 (966)
Q Consensus 184 ~d~~----------~~~naF~I~---~~~~--~~~~l~aks~eeK~~W~~~L~ 221 (966)
++.+ ..+|.|.|. +.++ ..++|.|.|++||.+||.+|.
T Consensus 67 e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 67 EPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccccccccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 7643 368999996 1112 239999999999999999983
No 37
>KOG1924|consensus
Probab=99.18 E-value=7.2e-11 Score=137.15 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHhhhccc
Q psy4663 350 VQFRVLNVLRHWVDHHFY 367 (966)
Q Consensus 350 iq~RVl~vL~~Wi~~~~~ 367 (966)
++..++..|+..+.++|.
T Consensus 208 ~~~eiIrClka~mNn~~G 225 (1102)
T KOG1924|consen 208 NLQEIIRCLKAFMNNKFG 225 (1102)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 445677888888888874
No 38
>KOG3519|consensus
Probab=99.06 E-value=5.1e-11 Score=147.29 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=117.1
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
+.|.++|++|||||+||.|||++|++.+..+ .||..+..|..+|+.+++.||.......+ ....+
T Consensus 468 ~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~--------------~~~~~ 533 (756)
T KOG3519|consen 468 SSLSSFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLES--------------YSSFL 533 (756)
T ss_pred CCchhhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccc--------------hhHHH
Confidence 3589999999999999999999999999888 99999999999999999999888832222 12335
Q ss_pred HHHHHHhhh---ccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCC
Q psy4663 89 EKTNELSKT---VDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQG 165 (966)
Q Consensus 89 ~kl~eiQ~~---I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~ 165 (966)
..+...|.. +++|+|.++.+.+++++..|...++.. ...+.++|++|||+..+++||+..... .
T Consensus 534 ~~~~~~q~~~~~~~~~~~~~~~~~Ss~l~~~~~~~~~~q-~~~~~~~~~~~l~~~~~~~c~~~~~~~------------~ 600 (756)
T KOG3519|consen 534 DKIAAEQSGSNSLELSEGELLLDNSSELLLSGPSLKIRQ-FQSDSQQRQFFLFDNQLVYCKRSSTSR------------S 600 (756)
T ss_pred HHhhhhhccchhhhccCCCcccccccceeeccchhhhhh-hhcchhhhhheecccceeEeecccccc------------c
Confidence 555555554 999999888888999999999987732 224567999999999999999964321 1
Q ss_pred ceE-EeEEEeeccceEEeCCC
Q psy4663 166 EYR-LKERFFIRRIEILDLPD 185 (966)
Q Consensus 166 ~y~-~k~~i~l~~~~I~d~~d 185 (966)
.|. |+.+....++.+.+..+
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~ 621 (756)
T KOG3519|consen 601 LLPSFRPRLASDSVDPFDNDG 621 (756)
T ss_pred cccccCccccccccccccccc
Confidence 222 77788888887776554
No 39
>KOG4305|consensus
Probab=99.00 E-value=5.3e-10 Score=136.97 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=124.3
Q ss_pred HHhhccccccchhhhhHhHHHHHHHHHccC-CCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHH
Q psy4663 8 VKYYLPKLFLHPLWHCFLYFDYIRILRGLS-PDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQ 85 (966)
Q Consensus 8 vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t-~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~ 85 (966)
.|..|.+||.+|+||+-||+|||++.+||| ++. +|++.|++|+..++.+..++|..... .
T Consensus 466 rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~------------------a 527 (1029)
T KOG4305|consen 466 RKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGE------------------A 527 (1029)
T ss_pred hccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhcc------------------c
Confidence 344688999999999999999999999999 777 99999999999999998888777732 2
Q ss_pred HHHHHHHHHhhhcc---C-CccCCCCcccceEeeeccEEEeecCCCCCccc-eEEEeccCceEEeecCCCC-cc---c--
Q psy4663 86 QAIEKTNELSKTVD---G-WTSVDIGQCCNEFFREDTLLKLNIGKKTESTE-RVCFLFDGLLLLCKPNSKR-TS---V-- 154 (966)
Q Consensus 86 e~l~kl~eiQ~~I~---g-w~g~di~~~~~~li~eG~l~ki~~~~~~~~~e-R~~FLFd~~Ll~cK~~~~~-~~---~-- 154 (966)
|+-.++.+++..+. | -.+..+...-|.|+.+|.+.+......+...+ -.|||||.+||.+|..... .+ +
T Consensus 528 en~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~fkgil~~~~~~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~ 607 (1029)
T KOG4305|consen 528 ENRCRLEELSQQLLFEPGEAVNLGLNDPERKLIFKGILKRKELSKTDGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFS 607 (1029)
T ss_pred hhhhhHHHHHHHhhccccccccccccChhhhcceeeeeeeccccccCCCccceeehhhhhhhhhhhhhhccccccceeec
Confidence 33334444443332 1 12244555578999999998654333222234 4444455555555543211 00 0
Q ss_pred ---cc---ccCCCCCCC-ceEEeEEEeeccce--EEeCCCCCCCcceEEEEeCC-CccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 155 ---SV---TAPLGGNQG-EYRLKERFFIRRIE--ILDLPDSDDYKNAFQIVPRC-GSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 155 ---~~---~~~~g~~~~-~y~~k~~i~l~~~~--I~d~~d~~~~~naF~I~~~~-~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
+. ...-+..+. .=.|+..+++..+. +.+..++ +.+|.|.+.... +..|++++.+.++++.|++++...+
T Consensus 608 RPiPl~lL~~~~~~dn~~~k~Y~sp~~~~~~~v~l~~~~~s-~~~~~~~~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq 686 (1029)
T KOG4305|consen 608 RPIPLDLLSLSPSEDNPSYKSYKSPIPLASVTVALPDKPTS-NVKNFFLYLGGARGASFTLYAESLNGRDQWVEKIKQAQ 686 (1029)
T ss_pred cCcchhhhcccccccchhhhccCCCCcchhhhhhcccCCCC-CccchhheeccccceEEEeeccchHHhhhHHhhhhHHH
Confidence 00 000000111 22345566666533 3333333 345544444332 4459999999999999999998766
Q ss_pred hhhh
Q psy4663 225 TKSM 228 (966)
Q Consensus 225 ~~~~ 228 (966)
++..
T Consensus 687 ~~~l 690 (1029)
T KOG4305|consen 687 KRSL 690 (1029)
T ss_pred Hhhh
Confidence 5544
No 40
>KOG3524|consensus
Probab=98.87 E-value=2.7e-09 Score=123.59 Aligned_cols=199 Identities=16% Similarity=0.217 Sum_probs=138.4
Q ss_pred hhhHHHHHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhh
Q psy4663 2 QGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNR 81 (966)
Q Consensus 2 ~~f~~~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~ 81 (966)
|.|-|..|..|.++|+.||||++---|||++|.| +.++.|+..+++|..+++.|..+||+..
T Consensus 501 q~kpecgRq~l~dlmirpvqrlpsvilllndl~k-~s~N~dk~~leea~kaikev~khInedK----------------- 562 (850)
T KOG3524|consen 501 QSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK-KSDNKDKNNLEEAAKAIKEVLKHINEDK----------------- 562 (850)
T ss_pred ccchhhhhhcccchhccchhhhhHHHHHHHHHHh-hccCcchhhHHHhhhhHHHHHHHhchhH-----------------
Confidence 4566788889999999999999999999999999 6667999999999999999999986666
Q ss_pred hhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEE-EeecCCCCCccceEEEeccCceEEeecCCCCcccccccCC
Q psy4663 82 LKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLL-KLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPL 160 (966)
Q Consensus 82 ~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~-ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~ 160 (966)
|+.+++..+-++-..|+|+-. .+....|-||++=+.. -+.+..-.+..+-.+|||+|+|++||.+..+. -+-+..-
T Consensus 563 -rkte~~~~ifdkf~diegcpa-~lvssnrsfi~~lev~i~l~~~~~~rg~~~~l~lf~dvlei~k~r~~~~-~tF~S~h 639 (850)
T KOG3524|consen 563 -RKTENFISIFDKFTDIEGCPA-ILVSSNRSFIRELEVSIALTSPGLQRGAKMKLFLFHDVLEITKIRLARH-ASFASLH 639 (850)
T ss_pred -HHHHHHHHHHHHHHhhhcCch-hheeccchHHHHhhhhhhhcCcccccccceeeehhhhHHHHHHHhHhhh-ccccCCC
Confidence 788888888888888888764 3444467777764442 22111111234677999999999999873211 0000111
Q ss_pred CCCCCceEEeEEEeeccce-EEeCCCCCCCcceEEE--EeCCCccE---EEEeCCch-hhhh-hHHHHH
Q psy4663 161 GGNQGEYRLKERFFIRRIE-ILDLPDSDDYKNAFQI--VPRCGSPV---ILIANSPE-DKNN-WMADLI 221 (966)
Q Consensus 161 g~~~~~y~~k~~i~l~~~~-I~d~~d~~~~~naF~I--~~~~~~~~---~l~aks~e-eK~~-W~~~L~ 221 (966)
|.....|++...|.|+.|+ |.|+-.++++.|||-+ ++.++..+ .|...+.| -|.. |++.|.
T Consensus 640 s~tr~p~KhI~li~LntIr~V~dIrE~~~cpnAF~lllr~~~EQ~~v~~~Fq~tdDE~p~e~~y~K~LC 708 (850)
T KOG3524|consen 640 SRQRRPYKHIDLIQLNTIRSVFDIREIAKCPNAFVLLLRHRDEQGGIDTVFESNDDEDPSDMRYFKNLC 708 (850)
T ss_pred CCCCCcccceeeccHHHHHHHhhhhhhccCccceEEEEeCchhhcCeeEEEEecccccchhhHHHHHHh
Confidence 2234459998888888775 4466666677777754 45544432 24445554 3444 988763
No 41
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.86 E-value=1.8e-08 Score=92.50 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=80.8
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-----CC
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-----DD 188 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-----~~ 188 (966)
+++|.|.+.+ ...++-+.|||+|+++.|+|+|.... ......++.|+|.++.|.+..+. ..
T Consensus 2 ~~~G~L~~~~-~~~~~wk~r~~vL~~~~L~~~~~~~~-------------~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~ 67 (104)
T PF00169_consen 2 IKEGWLLKKS-SSRKKWKKRYFVLRDSYLLYYKSSKD-------------KSDSKPKGSIPLDDCTVRPDPSSDFLSNKK 67 (104)
T ss_dssp EEEEEEEEEE-SSSSSEEEEEEEEETTEEEEESSTTT-------------TTESSESEEEEGTTEEEEEETSSTSTSTSS
T ss_pred EEEEEEEEEC-CCCCCeEEEEEEEECCEEEEEecCcc-------------ccceeeeEEEEecCceEEEcCccccccccC
Confidence 6899999886 33444579999999999999998421 23577888999999999988876 36
Q ss_pred CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 189 YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 189 ~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..|.|+|...++.++.|+|.|.+++..||++|..+.
T Consensus 68 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 68 RKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999999977789999999999999999997754
No 42
>PHA03247 large tegument protein UL36; Provisional
Probab=98.74 E-value=1.3e-06 Score=113.50 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=8.6
Q ss_pred EEEEeCCchhhhh
Q psy4663 203 VILIANSPEDKNN 215 (966)
Q Consensus 203 ~~l~aks~eeK~~ 215 (966)
|.+|.++.-+|..
T Consensus 1956 Y~vCyraVgdKLa 1968 (3151)
T PHA03247 1956 YALCFPAVTDKLG 1968 (3151)
T ss_pred EEeehHhHHHHHH
Confidence 6677777666644
No 43
>PHA03247 large tegument protein UL36; Provisional
Probab=98.70 E-value=2.3e-06 Score=111.18 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.5
Q ss_pred HHHHHHHhh
Q psy4663 649 RIRRFLENL 657 (966)
Q Consensus 649 ~i~~~l~~l 657 (966)
....|++.+
T Consensus 2532 ~~~~w~~gl 2540 (3151)
T PHA03247 2532 RMLTWIRGL 2540 (3151)
T ss_pred hhhhhhhhh
Confidence 345555544
No 44
>KOG3522|consensus
Probab=98.70 E-value=8.8e-09 Score=122.06 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=106.8
Q ss_pred cccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHHHHHHH
Q psy4663 15 LFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIEKTNE 93 (966)
Q Consensus 15 lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l~kl~e 93 (966)
||++| |+++|.|||| |+|||+.. +|+..|+.|+..+++++.++|+-...... .+|.-+.+.|
T Consensus 121 l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~--------------~~e~q~~~re 183 (925)
T KOG3522|consen 121 LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADE--------------INELQAALRE 183 (925)
T ss_pred HHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHH--------------HHHHHHHHHH
Confidence 99999 9999999999 99999999 89999999999999999999777621111 1233445666
Q ss_pred HhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeec--CCC--CcccccccCCCCCCCceEE
Q psy4663 94 LSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKP--NSK--RTSVSVTAPLGGNQGEYRL 169 (966)
Q Consensus 94 iQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~--~~~--~~~~~~~~~~g~~~~~y~~ 169 (966)
|...++|.+ +++..-|.|+++..++...... +++.|-+|+|++.+++.+- .++ +..++.+..+ ..++|++
T Consensus 184 i~~r~el~e--~L~ag~r~lLl~dl~se~vy~~--rk~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~v--dt~ky~~ 257 (925)
T KOG3522|consen 184 IEVRSELME--DLGAGRRQLLLQDLVSETVYTG--RKKDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVV--DTAKYKL 257 (925)
T ss_pred HHHHhhhhh--hcccchHHHHHHHHhhhhhhcc--ccchhhheeeeeeeeeeeeeeeeceecCCccccccc--cccceee
Confidence 777777665 6666668999988887553222 3359999999999998643 222 1122222222 3349999
Q ss_pred eEEEeeccceEEeCC
Q psy4663 170 KERFFIRRIEILDLP 184 (966)
Q Consensus 170 k~~i~l~~~~I~d~~ 184 (966)
+-++.|...+|....
T Consensus 258 lw~~~L~~~~vvks~ 272 (925)
T KOG3522|consen 258 LWKDPLVFADVVKSR 272 (925)
T ss_pred eeccccchhheeeec
Confidence 999999999988733
No 45
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.67 E-value=1.2e-07 Score=85.61 Aligned_cols=97 Identities=27% Similarity=0.409 Sum_probs=77.1
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCC--CCcc
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSD--DYKN 191 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~--~~~n 191 (966)
+++|.|.+...+....-++||++|+++.|.|++.... ...+...+.|+|.++.|....+.+ ...+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-------------~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~ 68 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA-------------KKDYKPKGSIDLSGITVREAPDPDSAKKPH 68 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc-------------cccCCCceEEECCcCEEEeCCCCccCCCce
Confidence 6789998775312334469999999999999998532 112677788999999988877753 5688
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
+|.|...++..++|.|.|.+++..|+.+|..+
T Consensus 69 ~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 69 CFEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred EEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 99999886668999999999999999999764
No 46
>PF15411 PH_10: Pleckstrin homology domain
Probab=98.60 E-value=2.5e-07 Score=88.28 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=72.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccC---CCCCCCceEEeEEEeeccceEEeCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAP---LGGNQGEYRLKERFFIRRIEILDLPDS 186 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~---~g~~~~~y~~k~~i~l~~~~I~d~~d~ 186 (966)
.|+|++.|.+....++. -+|+++|||+.+|||||..+....-..... .+...+.+++||+|.|.++ +++.+.
T Consensus 4 fG~Lll~g~~~V~k~~~---erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i--~~v~~~ 78 (116)
T PF15411_consen 4 FGELLLHGTLTVGKDDS---EREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNI--TEVSSS 78 (116)
T ss_pred ccceEEccEEEEEeCCc---ceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEee--eeeecc
Confidence 67999999999875433 249999999999999987533211000000 1235679999999999966 333322
Q ss_pred C-CCcceEEEEeC---CCccEEEEeCCchhhhhhHHHH
Q psy4663 187 D-DYKNAFQIVPR---CGSPVILIANSPEDKNNWMADL 220 (966)
Q Consensus 187 ~-~~~naF~I~~~---~~~~~~l~aks~eeK~~W~~~L 220 (966)
. .-.+...|.-+ +-.+|++.++++|+.+.|-.+|
T Consensus 79 s~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 79 SKPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 1 23456677642 2234999999999999998764
No 47
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.45 E-value=4.8e-07 Score=80.87 Aligned_cols=94 Identities=30% Similarity=0.418 Sum_probs=72.5
Q ss_pred eccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEE
Q psy4663 116 EDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQI 195 (966)
Q Consensus 116 eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I 195 (966)
+|.|.+...+..+.-+.||++|+++.|.+|+.... ...+...+.++|.++.|....+.+...++|.|
T Consensus 2 ~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~-------------~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i 68 (96)
T cd00821 2 EGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSS-------------KKSYKPKGSIPLSGAEVEESPDDSGRKNCFEI 68 (96)
T ss_pred cchhhhhhChhhCCccEEEEEEECCEEEEEECCCC-------------CcCCCCcceEEcCCCEEEECCCcCCCCcEEEE
Confidence 56666543221123468999999999999987422 01367778899999999988877667889999
Q ss_pred EeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 196 VPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 196 ~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
....+..+.|+|.|.+++..|+++|..
T Consensus 69 ~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 69 RTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 988657899999999999999999854
No 48
>KOG3671|consensus
Probab=98.36 E-value=5.4e-06 Score=93.81 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=8.2
Q ss_pred hHHHHHHhccCCc
Q psy4663 452 TLLESEYYRAVKP 464 (966)
Q Consensus 452 Tlid~~lF~~I~p 464 (966)
-++|++||.+...
T Consensus 89 liWdqELY~nf~y 101 (569)
T KOG3671|consen 89 LIWDQELYQNFEY 101 (569)
T ss_pred eeehHHhhhhcee
Confidence 4567777776643
No 49
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=98.35 E-value=3.6e-07 Score=93.90 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=48.9
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLS 61 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~ 61 (966)
+..|.+||++||||++||.+||++|+|+|+.. +|+..|++|+..++.+..+||
T Consensus 128 ~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 128 RLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred cCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999987 999999999999998887764
No 50
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.30 E-value=3.6e-06 Score=76.26 Aligned_cols=90 Identities=27% Similarity=0.255 Sum_probs=67.2
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEE
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~ 194 (966)
++|.|.|..+..+ .-+.|||.|.++.|.|.+.... .....++.+.|.++.|... +. -.+.|.
T Consensus 1 ~~G~L~k~~~~~~-~W~~r~~vl~~~~L~~~~~~~~--------------~~~~~~~~i~l~~~~~~~~-~~--~~~~F~ 62 (91)
T cd01246 1 VEGWLLKWTNYLK-GWQKRWFVLDNGLLSYYKNKSS--------------MRGKPRGTILLSGAVISED-DS--DDKCFT 62 (91)
T ss_pred CeEEEEEecccCC-CceeeEEEEECCEEEEEecCcc--------------CCCCceEEEEeceEEEEEC-CC--CCcEEE
Confidence 4788888743333 3368999999999999887422 1135667888888776542 22 268999
Q ss_pred EEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 195 IVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 195 I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
|...++..+.|+|.|.+|+.+||.+|..
T Consensus 63 i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 63 IDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 9988667799999999999999999854
No 51
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=98.29 E-value=3.8e-07 Score=93.62 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=49.4
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSD 62 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~ 62 (966)
+.|.+||++||||++||.+||++|+|+|+.. +|+..+++|+..|+.+...||+
T Consensus 127 ~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 127 LTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred CCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999976 9999999999999999888764
No 52
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=98.28 E-value=9.8e-07 Score=104.81 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=118.4
Q ss_pred HHHHHhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhh
Q psy4663 5 KEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLK 83 (966)
Q Consensus 5 ~~~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r 83 (966)
++..+..|..||-+|+-|..+|.||+++.+|.|.++ +|++++-+|+++++.....++........ |
T Consensus 612 ~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~-------------r 678 (1175)
T COG5422 612 DESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAEN-------------R 678 (1175)
T ss_pred chhhhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhccccc-------------c
Confidence 455677899999999999999999999999999877 99999999999998888777655522222 0
Q ss_pred HHHHHHHHHHHhhhccCCcc--CCCCcccceEeeeccEEEeec-C-CCCCccceEEEeccCceEEeecCCC-Cccccccc
Q psy4663 84 RQQAIEKTNELSKTVDGWTS--VDIGQCCNEFFREDTLLKLNI-G-KKTESTERVCFLFDGLLLLCKPNSK-RTSVSVTA 158 (966)
Q Consensus 84 ~~e~l~kl~eiQ~~I~gw~g--~di~~~~~~li~eG~l~ki~~-~-~~~~~~eR~~FLFd~~Ll~cK~~~~-~~~~~~~~ 158 (966)
. .+..++ |+.+-.-|- .-+.+.+|.+|.+|.+.+-.. . .+.-..+-+|||+|++|++||.+.. +-+
T Consensus 679 ~--~~~~l~--qql~fk~e~~~lgl~D~~rkii~kgvlk~ka~~~td~s~~~di~f~llDn~ll~~Kak~vnkw~----- 749 (1175)
T COG5422 679 G--DLFHLN--QQLLFKPEYVNLGLNDEYRKIIFKGVLKRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWR----- 749 (1175)
T ss_pred h--hhhhhh--hhhccCchhhcccccchhHHHHHhhhhhhhhhccCCcccccceeeeehhhHHHHhcccchhhhh-----
Confidence 0 011110 111111122 233445789999999873211 1 1111236789999999999998521 100
Q ss_pred CCCCCCCceEEeEEEeeccceEEeCCCCC----------------------CCcc--eEEEEeCCCc-cEEEEeCCchhh
Q psy4663 159 PLGGNQGEYRLKERFFIRRIEILDLPDSD----------------------DYKN--AFQIVPRCGS-PVILIANSPEDK 213 (966)
Q Consensus 159 ~~g~~~~~y~~k~~i~l~~~~I~d~~d~~----------------------~~~n--aF~I~~~~~~-~~~l~aks~eeK 213 (966)
+.+ -+..-|++.-+.+.-.+|.. .-+| .|+.++.+++ .+++||.+..-.
T Consensus 750 -----~hk-vfqrpipl~ll~i~~~eDsp~~~~y~~~~~s~~~l~pa~nt~~P~~a~~F~~~~~~~ry~itlYa~~~~g~ 823 (1175)
T COG5422 750 -----QHK-VFQRPIPLELLFISPDEDSPDRAEYLKPAPSADVLDPAYNTKPPKNAYGFELYGNGQRYQITLYAETHAGR 823 (1175)
T ss_pred -----hce-eecCCCcchhhccccccCCchhhhccCCCCcccccChhhhcCCccccceeeeecccccccccccccccchH
Confidence 000 01111233322222222211 1122 4777765433 389999999999
Q ss_pred hhhHHHHHHHh
Q psy4663 214 NNWMADLIMLN 224 (966)
Q Consensus 214 ~~W~~~L~~l~ 224 (966)
+.|++.+.+-|
T Consensus 824 d~~lE~i~nqQ 834 (1175)
T COG5422 824 DTWLEHIKNQQ 834 (1175)
T ss_pred HHHHHhhhhhh
Confidence 99999997743
No 53
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.22 E-value=6.5e-06 Score=75.49 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=66.4
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEE
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~ 194 (966)
++|.|.|...--+ .=+.|||.|=++.|.|.|.... ..-.-+|.|+|.+..|... +.+ ++.|+
T Consensus 1 ~~G~L~K~~~~~k-~Wk~RwFvL~~g~L~Yyk~~~~--------------~~~~~~G~I~L~~~~i~~~-~~~--~~~F~ 62 (91)
T cd01247 1 TNGVLSKWTNYIN-GWQDRYFVLKEGNLSYYKSEAE--------------KSHGCRGSIFLKKAIIAAH-EFD--ENRFD 62 (91)
T ss_pred CceEEEEeccccC-CCceEEEEEECCEEEEEecCcc--------------CcCCCcEEEECcccEEEcC-CCC--CCEEE
Confidence 3577777742222 3358999999999999987421 1124578999999877744 222 57899
Q ss_pred EEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 195 IVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 195 I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
|...++..|.|.|.|++|++.||++|.+
T Consensus 63 i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 63 ISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 9877667799999999999999999954
No 54
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.17 E-value=1.1e-05 Score=75.43 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=70.4
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC---C
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD---Y 189 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~---~ 189 (966)
.+++|.|.|-.+..+.. +.|||.|=++.|.|-|.... -.-++.|.|.++.|...+|... -
T Consensus 2 v~k~G~L~Kkg~~~k~W-kkRwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~~v~~~~~~~~~~~~ 64 (100)
T cd01233 2 VSKKGYLNFPEETNSGW-TRRFVVVRRPYLHIYRSDKD----------------PVERGVINLSTARVEHSEDQAAMVKG 64 (100)
T ss_pred cceeEEEEeeCCCCCCc-EEEEEEEECCEEEEEccCCC----------------ccEeeEEEecccEEEEccchhhhcCC
Confidence 35789998874333323 58999999999999987421 2446778999888876665432 3
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
.|.|+|... ++.|.|+|.|.+|++.||++|...
T Consensus 65 ~~~F~I~t~-~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 65 PNTFAVCTK-HRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CcEEEEECC-CCEEEEEcCCHHHHHHHHHHhhhh
Confidence 689999877 567999999999999999999664
No 55
>KOG0931|consensus
Probab=98.17 E-value=2e-06 Score=96.00 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=105.9
Q ss_pred cchhhhhhhhHH------HHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCC---CccceEEEeccCceEE
Q psy4663 74 TGIRAYNRLKRQ------QAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKT---ESTERVCFLFDGLLLL 144 (966)
Q Consensus 74 ~~~~~~~~~r~~------e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~---~~~eR~~FLFd~~Ll~ 144 (966)
+.+.+|+|.++. .+..+++.+++.|.|.+-..+..+.|+|+.--.|..|..-+|. ...+|-+|||||+|++
T Consensus 372 ll~GIYeRIqk~ELktndDHVsqVqkVer~IVGkk~~vLs~phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV 451 (627)
T KOG0931|consen 372 LLVGIYERIQKRELKTNDDHVSQVQKVERAIVGKKPPVLSLPHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVV 451 (627)
T ss_pred HHHHHHHHHHHhhcccCcchHHHHHHHHHHHhcCCCcccccCCceEEEEEeeeecCCCCchhhcccccceeeeecchhhh
Confidence 344557764433 4788999999999999876777788999998888888654543 4578999999999999
Q ss_pred eecCCC-CcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCC---c--cEEEEeCCchhhhhhHH
Q psy4663 145 CKPNSK-RTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCG---S--PVILIANSPEDKNNWMA 218 (966)
Q Consensus 145 cK~~~~-~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~---~--~~~l~aks~eeK~~W~~ 218 (966)
+|.-.+ +.+ -.|+|+..+.|-+|++..-.++ .+.|+..|.+.-. . .+.|.|.+.+++..+++
T Consensus 452 ~K~~~kkk~s-----------~TYtf~qs~~Llgmhv~lFqn~-yY~fGitltsp~~g~e~k~~ihFnA~n~~dr~kFv~ 519 (627)
T KOG0931|consen 452 TKIFQKKKTS-----------VTYTFRQSFLLLGMHVQLFQNG-YYEFGITLTSPVPGSEKKVLIHFNAPNFQDRCKFVA 519 (627)
T ss_pred hhhhccCcce-----------eEeehhhhhhHHHHHHHHHhhc-cccCceEEeccCCCCceeEEEEecCCCHHHHHHHHH
Confidence 987433 222 3699999999999998866655 5777888873321 2 28899999999999999
Q ss_pred HHHHH
Q psy4663 219 DLIML 223 (966)
Q Consensus 219 ~L~~l 223 (966)
+|..-
T Consensus 520 Dl~ES 524 (627)
T KOG0931|consen 520 DLRES 524 (627)
T ss_pred HHHHH
Confidence 99653
No 56
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.08 E-value=2.2e-05 Score=70.60 Aligned_cols=79 Identities=30% Similarity=0.465 Sum_probs=62.7
Q ss_pred CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCC--CccEEEE
Q psy4663 129 ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRC--GSPVILI 206 (966)
Q Consensus 129 ~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~--~~~~~l~ 206 (966)
.-+.||++|+++.|++++..... .... +.+++.++.|....+..+..+.|.|...+ ...+.|.
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~--------------~~~~-~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~ 82 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKK--------------EIKP-GSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQ 82 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCC--------------cCCC-CEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEE
Confidence 34689999999999999885321 1110 56788888888777665678899999885 6679999
Q ss_pred eCCchhhhhhHHHHHH
Q psy4663 207 ANSPEDKNNWMADLIM 222 (966)
Q Consensus 207 aks~eeK~~W~~~L~~ 222 (966)
|.|.++++.||++|.+
T Consensus 83 ~~~~~~~~~W~~al~~ 98 (99)
T cd00900 83 ADSEEEAQEWVEALQQ 98 (99)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999864
No 57
>KOG3671|consensus
Probab=98.05 E-value=4.2e-05 Score=86.80 Aligned_cols=6 Identities=67% Similarity=1.237 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy4663 876 SPSSPG 881 (966)
Q Consensus 876 ~p~~~~ 881 (966)
||+..|
T Consensus 415 PPs~~g 420 (569)
T KOG3671|consen 415 PPSLPG 420 (569)
T ss_pred CCcccC
Confidence 333333
No 58
>KOG1729|consensus
Probab=98.03 E-value=1.9e-06 Score=94.26 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=94.8
Q ss_pred HHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCC-ceE
Q psy4663 90 KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQG-EYR 168 (966)
Q Consensus 90 kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~-~y~ 168 (966)
.+.+++..+.+- |..+..+++.|++||++++. .+++.+.|++|||+|++.||... ..+ .|.
T Consensus 24 ~~~~~e~~~~~r-~~~~~~~grv~~~q~~~~k~---~rk~~q~r~~~l~~D~~~~~~~~--------------~~~~~~~ 85 (288)
T KOG1729|consen 24 RNCKVEFCFGRR-GHPCRECGRVLCRQGTLVKR---CRKKLQSRSFFLFNDILVYGNIV--------------SDNKLLN 85 (288)
T ss_pred hhhcccchhhhc-cCcccccchhhhhhhhhHHH---Hhcccccccccccccchhhcccc--------------cCHHHHh
Confidence 333444444333 56788889999999999776 45567899999999999999763 223 566
Q ss_pred EeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 169 LKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
....+.+.++.+....+...+.+.++|... .+++++.+.+.-||..|+.+|..++...+..
T Consensus 86 ~~~~~~le~~~~~~~~~~~~~~~~~~~~S~-~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 86 KNHIIPLEGVSQESRSDNERVRNGWQILSA-LKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred HHhcccccchhhhhhccccccccchhhhcc-cchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888999999888 6789999999999999998887766554443
No 59
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.00 E-value=2.7e-05 Score=73.56 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=66.4
Q ss_pred eeeccEEEeecCCCC----CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC-CCC-
Q psy4663 114 FREDTLLKLNIGKKT----ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP-DSD- 187 (966)
Q Consensus 114 i~eG~l~ki~~~~~~----~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~-d~~- 187 (966)
|+||.|.|-..+.++ .-+.|||.|=++.|.|.|.... ..-.-+|.|+|.++.+.+.. +..
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~--------------~~~~~kG~I~L~~~~~ve~~~~~~~ 66 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFE--------------KRGSKKGSIDLSKIKCVETVKPEKN 66 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcc--------------cccCcceeEECCcceEEEEecCCcC
Confidence 578888877433321 2257999998888999886321 11246788999988665432 221
Q ss_pred -----CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 188 -----DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 188 -----~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.-++.|+|... ...|.++|.|++|+++||++|.+
T Consensus 67 ~~~~~~~~~~F~i~t~-~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 67 PPIPERFKYPFQVVHD-EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cccccccCccEEEEeC-CCeEEEEcCCHHHHHHHHHHHHh
Confidence 23678999987 45688899999999999999965
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.00 E-value=2.8e-05 Score=71.77 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=66.8
Q ss_pred eeccEEEeecCCC---CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcc
Q psy4663 115 REDTLLKLNIGKK---TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKN 191 (966)
Q Consensus 115 ~eG~l~ki~~~~~---~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~n 191 (966)
+||-|.|-....+ +.=+.|||.|-++.|+|-|.... -..++.|+|.+..|....+.. -.+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~~v~~~~~~~-k~~ 64 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----------------EKAEGLIFLSGFTIESAKEVK-KKY 64 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----------------CccceEEEccCCEEEEchhcC-Cce
Confidence 4677776532222 11258999999999999886421 224678999998887664443 678
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.|+|...++..|.|+|.|.+|.++||++|.+
T Consensus 65 ~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 65 AFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 9999877557799999999999999999964
No 61
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=98.00 E-value=1.2e-05 Score=79.09 Aligned_cols=99 Identities=16% Similarity=0.297 Sum_probs=51.7
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEE-eEEEeeccceEEeCCCCC----
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRL-KERFFIRRIEILDLPDSD---- 187 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~-k~~i~l~~~~I~d~~d~~---- 187 (966)
||++|.|.+-. +.+....+=++||||+.||+||..... ...+|++ +.=|+|+-+.|+..+|..
T Consensus 1 Li~~G~L~Rk~-~~~~~~~di~~~LFDh~Lll~K~k~~~-----------k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~ 68 (135)
T PF15405_consen 1 LIYKGDLKRKG-DNSFNWVDIHVYLFDHYLLLTKPKKVN-----------KREQYKVYRRPIPLELLVLESMDDPPPQRS 68 (135)
T ss_dssp -----------------S-EEEEEEESSEEEEEEEEEET-----------TEEEEEESS--EEGGG-EEEE--TTTS---
T ss_pred Ccccccccccc-ccccccceeEEEeeccEEEEEEEEecC-----------CeEEEEEEECCcCHHHeeeecccCCCcccC
Confidence 57889998653 222223489999999999999974211 2235655 556888888777644421
Q ss_pred ----------------------------CCcceEEEEeCCCc--cEEEEeCCchhhhhhHHHHHHH
Q psy4663 188 ----------------------------DYKNAFQIVPRCGS--PVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 188 ----------------------------~~~naF~I~~~~~~--~~~l~aks~eeK~~W~~~L~~l 223 (966)
...+.|.|.+-+.. .|||+|.|..++++|+++|..-
T Consensus 69 ~~~r~s~s~~~~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 69 IAKRPSSSLISSSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp ------S-------SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cccccccCccCCccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 12334666555333 4899999999999999999653
No 62
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.94 E-value=5.7e-05 Score=73.42 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=70.0
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEE
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~ 194 (966)
++|.|.|..+..+.. +.|||.|-++.|.|-|... .-..++.|+|.++.|...++. .-+++|+
T Consensus 2 k~G~L~K~~~~~~~W-kkRwfvL~~~~L~yyk~~~----------------~~~~~g~I~L~~~~v~~~~~~-~~~~~F~ 63 (125)
T cd01252 2 REGWLLKQGGRVKTW-KRRWFILTDNCLYYFEYTT----------------DKEPRGIIPLENVSIREVEDP-SKPFCFE 63 (125)
T ss_pred cEEEEEEeCCCCCCe-EeEEEEEECCEEEEEcCCC----------------CCCceEEEECCCcEEEEcccC-CCCeeEE
Confidence 578888764333323 5899999999988877531 123577899999888876553 3568899
Q ss_pred EEeCCC--------------------ccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 195 IVPRCG--------------------SPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 195 I~~~~~--------------------~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
|...++ ..|.|+|.|.+|..+||++|..+.....
T Consensus 64 i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 64 LFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred EECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 986543 3477999999999999999988665443
No 63
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=97.94 E-value=9.1e-06 Score=82.85 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=49.1
Q ss_pred hccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHH
Q psy4663 11 YLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSD 62 (966)
Q Consensus 11 ~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~ 62 (966)
.|.++|++|+|||.||.++|++|+|+|+++ +|++.|++|+..++.+...+|+
T Consensus 128 ~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 128 SLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 688999999999999999999999999987 8999999999999999988875
No 64
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.81 E-value=0.00011 Score=66.99 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=65.6
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEE
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~ 194 (966)
++|.|.|-..+..+.=+.|||.|-++.|+|-+.... ......+.|.|..+.|....+..+-.+.|.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~--------------~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~ 66 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKD--------------YDNAHVKEIDLRRCTVRHNGKQPDRRFCFE 66 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcc--------------cccccceEEeccceEEecCccccCCceEEE
Confidence 478887764332232358999998888888765321 012234568888777776665544678999
Q ss_pred EEeCCCccEEEEeCCchhhhhhHHHHH
Q psy4663 195 IVPRCGSPVILIANSPEDKNNWMADLI 221 (966)
Q Consensus 195 I~~~~~~~~~l~aks~eeK~~W~~~L~ 221 (966)
|...+ ..|.|+|.|.++.++||.+|.
T Consensus 67 i~~~~-~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 67 VISPT-KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred EEcCC-cEEEEECCCHHHHHHHHHHHh
Confidence 99875 679999999999999999985
No 65
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.70 E-value=0.00018 Score=67.52 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=61.7
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccc----eEEeC-CCC-C-
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRI----EILDL-PDS-D- 187 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~----~I~d~-~d~-~- 187 (966)
+||-|.|......+.-+.|||.|=++.|.|-|.... -.-+|.|+|..+ .|... .++ .
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d----------------~~~~G~I~L~~~~~~~~v~~~~~~~~~~ 64 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLD----------------AFAKGEVFLGSQEDGYEVREGLPPGTQG 64 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCC----------------cCcCcEEEeeccccceeEeccCCccccc
Confidence 467777763222222357998888888888876311 124456777643 34321 221 1
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
...++|+|... ++.|.|+|.|++|+++||++|..++.
T Consensus 65 ~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 65 NHWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 22348999887 77899999999999999999987654
No 66
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.70 E-value=0.00019 Score=66.65 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=58.3
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC--CcceEEEEeCCCccEEEEeC
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD--YKNAFQIVPRCGSPVILIAN 208 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~--~~naF~I~~~~~~~~~l~ak 208 (966)
..|||-|=++.|.|.|... -.-++.|+|.++..+...+... ..|.|+|... .+.|.|+|.
T Consensus 22 KkRwF~Lt~~~L~Y~k~~~-----------------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~-~r~~yi~a~ 83 (98)
T cd01244 22 KKRYFQLTTTHLSWAKDVQ-----------------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCE-DDTMQLQFE 83 (98)
T ss_pred ceeEEEECCCEEEEECCCC-----------------CceeeeEEccceEEEEEcCCcccCCCceEEEEeC-CCeEEEECC
Confidence 5799999999999998531 2567889999887665433322 3589999987 457999999
Q ss_pred CchhhhhhHHHHHH
Q psy4663 209 SPEDKNNWMADLIM 222 (966)
Q Consensus 209 s~eeK~~W~~~L~~ 222 (966)
|.+|+++||++|.+
T Consensus 84 s~~E~~~Wi~al~k 97 (98)
T cd01244 84 APVEATDWLNALEK 97 (98)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999964
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.63 E-value=0.00029 Score=65.82 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=63.2
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccC------ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEe-CCC
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDG------LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD-LPD 185 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~------~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d-~~d 185 (966)
.+++|.|.|. ++-+ -|||.|=.+ .|-|.|....- ....=.-++.|+|+++..+. ..|
T Consensus 2 v~k~GyL~K~--K~~k---kRwFVLr~~~~~~p~~Leyyk~ek~~-----------~~~~~~p~~vI~L~~c~~v~~~~d 65 (101)
T cd01257 2 VRKSGYLRKQ--KSMH---KRFFVLRAESSGGPARLEYYENEKKF-----------LQKGSAPKRVIPLESCFNINKRAD 65 (101)
T ss_pred ccEEEEEeEe--cCcE---eEEEEEecCCCCCCceEEEECChhhc-----------cccCCCceEEEEccceEEEeeccc
Confidence 4678999987 3433 488888766 57777653210 00001246778888776543 334
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
. .-+|+|.|...+ ..|.|.|.|++|++.|+++|..
T Consensus 66 ~-k~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 66 A-KHRHLIALYTRD-EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred c-ccCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhh
Confidence 3 346899999985 5899999999999999999854
No 68
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.58 E-value=0.00042 Score=64.36 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=58.7
Q ss_pred eccEEEeecCCCCCccceEEEeccC--ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeC-CCC------
Q psy4663 116 EDTLLKLNIGKKTESTERVCFLFDG--LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDL-PDS------ 186 (966)
Q Consensus 116 eG~l~ki~~~~~~~~~eR~~FLFd~--~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~-~d~------ 186 (966)
+|.|.|.....+.. +.|||.|-++ .|.|-|... .-..+|.|+|+++..+.. .+.
T Consensus 2 ~G~L~K~g~~~k~W-kkRwFvL~~~~~~L~Yy~~~~----------------~~~~~g~I~L~~~~~v~~~~~~~~~~~~ 64 (101)
T cd01235 2 EGYLYKRGALLKGW-KPRWFVLDPDKHQLRYYDDFE----------------DTAEKGCIDLAEVKSVNLAQPGMGAPKH 64 (101)
T ss_pred eEEEEEcCCCCCCc-cceEEEEECCCCEEEEecCCC----------------CCccceEEEcceeEEEeecCCCCCCCCC
Confidence 56666653222333 4789888743 777776521 234567888887654432 211
Q ss_pred CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 187 DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 187 ~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
..-.+.|+|... ++.|.|+|.|.+|...||++|.++
T Consensus 65 ~~~~~~f~i~t~-~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 65 TSRKGFFDLKTS-KRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCCceEEEEEeC-CceEEEECCCHHHHHHHHHHHHhh
Confidence 123456887665 567999999999999999999764
No 69
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.55 E-value=0.00031 Score=65.46 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=54.6
Q ss_pred ceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-CC---CCcceEEEEeCCCccEEEEe
Q psy4663 132 ERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-SD---DYKNAFQIVPRCGSPVILIA 207 (966)
Q Consensus 132 eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-~~---~~~naF~I~~~~~~~~~l~a 207 (966)
-|||.|=++.|.|-|..... . ...+.|+|+++..+...+ .. +..|+|+|... .++|.|+|
T Consensus 21 rRwF~L~~~~L~y~K~~~~~-----------~----~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp-~rt~~l~A 84 (101)
T cd01264 21 TRYFTLSGAQLLFQKGKSKD-----------D----PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-DKTYILKA 84 (101)
T ss_pred eEEEEEeCCEEEEEeccCcc-----------C----CCCceEEcccceEEeeccccccccccCcEEEEEcC-CceEEEEe
Confidence 69999999998888764210 0 114568888776554332 21 34689999887 57899999
Q ss_pred CCchhhhhhHHHHHH
Q psy4663 208 NSPEDKNNWMADLIM 222 (966)
Q Consensus 208 ks~eeK~~W~~~L~~ 222 (966)
.|++|++.||++|..
T Consensus 85 ~se~e~e~WI~~i~~ 99 (101)
T cd01264 85 KDEKNAEEWLQCLNI 99 (101)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999854
No 70
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.54 E-value=0.00041 Score=65.04 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=55.6
Q ss_pred eeeccEEEeecCCCCCccceEEEec-cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceE-----EeCCCCC
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLF-DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEI-----LDLPDSD 187 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLF-d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I-----~d~~d~~ 187 (966)
|+||.|.|.....+.. ..|||.|- +..|+|-|..... .. .+.++|.++.| ...++
T Consensus 2 ~k~G~L~K~g~~~~~W-k~R~f~L~~~~~l~~yk~~~~~--------------~~--~~~i~l~~~~v~~~~~~~~~~-- 62 (102)
T cd01241 2 VKEGWLHKRGEYIKTW-RPRYFLLKSDGSFIGYKEKPED--------------GD--PFLPPLNNFSVAECQLMKTER-- 62 (102)
T ss_pred cEEEEEEeecCCCCCC-eeEEEEEeCCCeEEEEecCCCc--------------cC--ccccccCCeEEeeeeeeeccC--
Confidence 5789998874333332 58999998 6667766653210 01 12344444443 22222
Q ss_pred CCcceEEEEeCC-C--ccEEEEeCCchhhhhhHHHHHH
Q psy4663 188 DYKNAFQIVPRC-G--SPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 188 ~~~naF~I~~~~-~--~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.-.|+|.|...+ . ..-+|+|.|.||+++||++|..
T Consensus 63 ~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~ 100 (102)
T cd01241 63 PRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQT 100 (102)
T ss_pred CCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHh
Confidence 235789998432 1 1237889999999999999965
No 71
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.54 E-value=0.00047 Score=65.29 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=54.7
Q ss_pred cceEEEeccCce-------EEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-----CCCCcceEEEEeC
Q psy4663 131 TERVCFLFDGLL-------LLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-----SDDYKNAFQIVPR 198 (966)
Q Consensus 131 ~eR~~FLFd~~L-------l~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-----~~~~~naF~I~~~ 198 (966)
+.|||.|-++.| .|-|.. ..-..+|.|+|.++.+++... .....+.|.|...
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~----------------~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~ 83 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTS----------------RKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI 83 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCC----------------CCCccceEEECCccEEEcccccccccCcccceEEEEEeC
Confidence 479999987754 555542 124567889999887765431 1123567888865
Q ss_pred CCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 199 CGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 199 ~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
++.|.|+|.|.+|.+.||.+|.++
T Consensus 84 -~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 84 -VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred -CccEEEEECCHHHHHHHHHHHHhh
Confidence 667999999999999999999764
No 72
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.51 E-value=0.00058 Score=63.16 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=58.7
Q ss_pred eccEEEeecC-CCCCccceEEEecc--CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcce
Q psy4663 116 EDTLLKLNIG-KKTESTERVCFLFD--GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNA 192 (966)
Q Consensus 116 eG~l~ki~~~-~~~~~~eR~~FLFd--~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~na 192 (966)
.|-|.|..++ ..+.-+.|+|.|=+ ..|-|.|... .-.-+|.|+|.++.+....+. -++.
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~----------------d~~p~G~I~L~~~~~~~~~~~--~~~~ 63 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQ----------------DAKPLGRVDLSGAAFTYDPRE--EKGR 63 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCC----------------cccccceEECCccEEEcCCCC--CCCE
Confidence 3566665221 12222467766642 3577776531 124567889998777644333 3689
Q ss_pred EEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 193 FQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 193 F~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
|+|... ++.|.|.|.|++|++.||++|..
T Consensus 64 F~i~t~-~r~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 64 FEIHSN-NEVIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred EEEEcC-CcEEEEECCCHHHHHHHHHHHHh
Confidence 999876 56799999999999999999965
No 73
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.48 E-value=0.0006 Score=64.04 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEe-CCCCCCCcceEEEEeCCCccEEEEeCC
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD-LPDSDDYKNAFQIVPRCGSPVILIANS 209 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d-~~d~~~~~naF~I~~~~~~~~~l~aks 209 (966)
+-|+|.|-++-+|+...... ..-.=+|.|+|+.+..+. .++..+-.|+|.|... ++.|.|.|.|
T Consensus 25 krRWFvL~~~~~L~y~~d~~--------------~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp-~R~f~l~Aet 89 (104)
T cd01236 25 QRRWFILYDHGLLTYALDEM--------------PTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTP-DKEHFIKAET 89 (104)
T ss_pred cceEEEEeCCCEEEEeeCCC--------------CCcccceEEEccceEEEeecccccCCccEEEEECC-CceEEEEeCC
Confidence 47999999877777754211 011225778888665443 3333334689999888 6679999999
Q ss_pred chhhhhhHHHHHH
Q psy4663 210 PEDKNNWMADLIM 222 (966)
Q Consensus 210 ~eeK~~W~~~L~~ 222 (966)
++|++.||++|..
T Consensus 90 e~E~~~Wi~~l~~ 102 (104)
T cd01236 90 KEEISWWLNMLMV 102 (104)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999853
No 74
>KOG0930|consensus
Probab=97.26 E-value=0.0017 Score=69.01 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=88.9
Q ss_pred HHHHHHHHhhhccC-------CccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccC
Q psy4663 87 AIEKTNELSKTVDG-------WTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAP 159 (966)
Q Consensus 87 ~l~kl~eiQ~~I~g-------w~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~ 159 (966)
..+.|.++-.+|.. -+|.|+..+.=---|||-|.|..++.-+.-+.|||.|=|++|-|-.-..-
T Consensus 227 pee~LrnlyeSi~~epFkIPeddgndlthtffnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD--------- 297 (395)
T KOG0930|consen 227 PEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD--------- 297 (395)
T ss_pred cHHHHHHHHHHhcCCCCCCCcccCCcchhhccCccccceeeeecCCcccchhheeEEeecceeeeeeeccC---------
Confidence 45567777777655 34556655433345799999994322122247999999999998754211
Q ss_pred CCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCC---------------------ccEEEEeCCchhhhhhHH
Q psy4663 160 LGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCG---------------------SPVILIANSPEDKNNWMA 218 (966)
Q Consensus 160 ~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~---------------------~~~~l~aks~eeK~~W~~ 218 (966)
=.=+|.|+|.++.|..++|. .-.|+|+|+.... ..|.++|-|+|||.+||+
T Consensus 298 -------KEPrGIIpLeNlsir~VedP-~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~ 369 (395)
T KOG0930|consen 298 -------KEPRGIIPLENLSIREVEDP-KKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIK 369 (395)
T ss_pred -------CCCCcceeccccceeeccCC-CCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHH
Confidence 01245799999999988876 4578898873321 127889999999999999
Q ss_pred HHHHHhhhhhhHhhh
Q psy4663 219 DLIMLNTKSMFERTL 233 (966)
Q Consensus 219 ~L~~l~~~~~~~r~l 233 (966)
.|...+++..+-.|+
T Consensus 370 sI~a~is~~Pfy~ml 384 (395)
T KOG0930|consen 370 SIKAAISRDPFYEML 384 (395)
T ss_pred HHHHHhccCcHHHHH
Confidence 998877776665443
No 75
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.21 E-value=0.0015 Score=61.09 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=64.4
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCC--CCCceEEeEEEeeccce-EEeCCCCCCCcceEEEEeCCCc----c-
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGG--NQGEYRLKERFFIRRIE-ILDLPDSDDYKNAFQIVPRCGS----P- 202 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~--~~~~y~~k~~i~l~~~~-I~d~~d~~~~~naF~I~~~~~~----~- 202 (966)
..-.+|||+|.|=+||++++...-.+.. .|. ....|+--.-++|..++ |.|+.|++++.|||-+..+.-. .
T Consensus 26 e~~tlFLfsD~lEi~kkR~kv~~~~KSP-~~~~~~~~~~KHi~lmpLs~IkrVvdI~DtE~c~~aF~L~~R~p~d~~~~L 104 (129)
T cd01229 26 EQVTLFLFNDCLEIARKRHKVIGTFKSP-HGSTRPPASLKHIHLMPLSQIKKVLDIRDTEDCHNAFALLVRPPTEQANVL 104 (129)
T ss_pred CeEEEEEecchHHHhhhcccccCCcCCC-CCCCCCCcccceEEEeEhHHeEEEEeeeccccccceeEEEEeCCccchheE
Confidence 4788999999999999986533222211 121 34568877888888884 7799999999999988744322 2
Q ss_pred EEEEe-CCchhhhhhHHHHHHHh
Q psy4663 203 VILIA-NSPEDKNNWMADLIMLN 224 (966)
Q Consensus 203 ~~l~a-ks~eeK~~W~~~L~~l~ 224 (966)
|.|.- ..+-+|..|+..|.+..
T Consensus 105 ~sF~l~~Ee~~K~~~Lk~Lcr~~ 127 (129)
T cd01229 105 LSFQMTSEELPKEVWLKMLCRHV 127 (129)
T ss_pred EEEEecCCcchHHHHHHHHHHHh
Confidence 55544 44557999999886643
No 76
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.17 E-value=0.0023 Score=59.95 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeE--EEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeC
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKE--RFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIAN 208 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~--~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~ak 208 (966)
+.||+.|-++.|.|.|-.... .... .+ .|.+.+..|.-..+...-+|.|.|...++..|.|+|.
T Consensus 24 k~r~~vL~~~~L~~ykd~~~~-----------~~~~---~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~ 89 (104)
T cd01253 24 DNVYGVLCGQSLSFYKDEKMA-----------AENV---HGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAP 89 (104)
T ss_pred ceEEEEEeCCEEEEEecCccc-----------ccCC---CCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECC
Confidence 589999999999888753210 0000 11 3566666665544444567999999887778999999
Q ss_pred CchhhhhhHHHHH
Q psy4663 209 SPEDKNNWMADLI 221 (966)
Q Consensus 209 s~eeK~~W~~~L~ 221 (966)
|.++-..|+.+|.
T Consensus 90 s~e~~~~Wi~aL~ 102 (104)
T cd01253 90 DEEEMSSWVRALK 102 (104)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999984
No 77
>KOG1830|consensus
Probab=97.06 E-value=0.024 Score=63.78 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=12.5
Q ss_pred cccchhhHhhhHhhhhcccCC
Q psy4663 946 LVLPVEKIHYLLSKDVLQYSG 966 (966)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~ 966 (966)
-++..|-.--|++.-..+|.|
T Consensus 483 ~~v~ndvatiLsRRiaveysd 503 (518)
T KOG1830|consen 483 EAVENDVATILSRRIAVEYSD 503 (518)
T ss_pred ccccchHHHHHHHHHHHHhcc
Confidence 566777665566555555643
No 78
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.95 E-value=0.0027 Score=58.98 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=53.1
Q ss_pred ceEEEecc----CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-CCCcceEEEEeCCC-ccEEE
Q psy4663 132 ERVCFLFD----GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-DDYKNAFQIVPRCG-SPVIL 205 (966)
Q Consensus 132 eR~~FLFd----~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~naF~I~~~~~-~~~~l 205 (966)
.|+|.|=. .+|-|-+.... -.=++.|+|.++.|..++|. -+-.|+|+|..... ..|.+
T Consensus 18 ~rwF~l~~~~s~~~l~yf~~~~~----------------~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~ 81 (98)
T cd01245 18 TLYFALILDGSRSHESLLSSPKK----------------TKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYS 81 (98)
T ss_pred eeEEEEecCCCCceEEEEcCCCC----------------CCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEE
Confidence 67777753 67777665321 12235688999988888774 23469999998855 45888
Q ss_pred EeCCchhhhhhHHHHHH
Q psy4663 206 IANSPEDKNNWMADLIM 222 (966)
Q Consensus 206 ~aks~eeK~~W~~~L~~ 222 (966)
+|.+ +|+++||++|..
T Consensus 82 ~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 82 CRSS-EERDKWIESLQA 97 (98)
T ss_pred eCCH-HHHHHHHHHHhc
Confidence 8888 999999999853
No 79
>KOG1830|consensus
Probab=96.82 E-value=0.014 Score=65.60 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=9.9
Q ss_pred ccccCHHHHHHhhhHHHHHHhccC
Q psy4663 439 ILVLHPVEIARQLTLLESEYYRAV 462 (966)
Q Consensus 439 ll~~~p~eiA~QLTlid~~lF~~I 462 (966)
|.+++-..--+--|+.|+.+|.+-
T Consensus 92 LqdinmrKAFkSStvqDQqifdR~ 115 (518)
T KOG1830|consen 92 LQDINMRKAFKSSTVQDQQIFDRN 115 (518)
T ss_pred cchhHHHhhhhhhhhhhhhhhccc
Confidence 333333333344444444444443
No 80
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.80 E-value=0.0082 Score=57.67 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=61.5
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCce-EEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCC
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEY-RLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANS 209 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y-~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks 209 (966)
..||+.|-++.|.+.|-..... .+..| .+...|.|....+.-..|-..-+|.|.|...++..|.|+|.+
T Consensus 27 k~~y~vL~g~~L~~yKDe~~~~----------~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~ 96 (117)
T cd01230 27 KMFYGILRGLVLYLQKDEHKPG----------KSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSS 96 (117)
T ss_pred eEEEEEEECCEEEEEccCcccc----------cccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCC
Confidence 4799999999998888753210 11223 445677777665444445556789999999988889999999
Q ss_pred chhhhhhHHHHHHH
Q psy4663 210 PEDKNNWMADLIML 223 (966)
Q Consensus 210 ~eeK~~W~~~L~~l 223 (966)
.||-+.|+.+|...
T Consensus 97 ~ee~~~Wi~~I~~~ 110 (117)
T cd01230 97 LKELQSWIERINVV 110 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999653
No 81
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.69 E-value=0.011 Score=53.97 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=60.2
Q ss_pred ccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-CCCcceEEEEeCCCc-------
Q psy4663 130 STERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-DDYKNAFQIVPRCGS------- 201 (966)
Q Consensus 130 ~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~naF~I~~~~~~------- 201 (966)
+++|+|.|=++.|-+-|-..- .. =|+.|+|++++|.+++++ ..-+|+|++.+.+++
T Consensus 19 sK~~WFVLt~~~L~wykd~ee------------KE----~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 19 SKDYWFVLTSESLSWYKDDEE------------KE----KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred CcceEEEEecceeeeeccccc------------cc----ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchh
Confidence 348999999999999886421 11 134689999999999974 245799999966643
Q ss_pred cEEEEeCCchhhhhhHHHHHH
Q psy4663 202 PVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 202 ~~~l~aks~eeK~~W~~~L~~ 222 (966)
.+.|.|.|+|+-..|.+.+.+
T Consensus 83 ~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 83 QLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred eeeecCCCHHHHHHHHHHHHh
Confidence 489999999999999998754
No 82
>KOG1923|consensus
Probab=96.58 E-value=0.0077 Score=72.27 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy4663 650 IRRFLE 655 (966)
Q Consensus 650 i~~~l~ 655 (966)
-+.|++
T Consensus 207 ~~~~~~ 212 (830)
T KOG1923|consen 207 PQSYQR 212 (830)
T ss_pred HHHHHH
Confidence 334443
No 83
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=96.34 E-value=0.023 Score=54.24 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=52.7
Q ss_pred eeccEEEeecCCCCCccceEEEec-cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeec--cceEEe----CCCCC
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLF-DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIR--RIEILD----LPDSD 187 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLF-d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~--~~~I~d----~~d~~ 187 (966)
++|.|.|....-++.=..|||.|= |.+|.|-|.......+.+. |........++.+.+. ...+.. ..-+.
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRII---GEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeeccccccccccc---ccchhceEeecccCcccccccccccccCCcccC
Confidence 589999984331233358999999 9999999982111111100 1111222223322211 111111 11122
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
...+.|.|... .++|.|.|.|.+|+..||++|..
T Consensus 78 ~~~~~~~i~T~-~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 78 IHLKVFSIFTP-TKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp -SSEEEEEE-S-S-EEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCcEEECC-CcEEEEEECCHHHHHHHHHHHHh
Confidence 23556777665 56799999999999999999964
No 84
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.16 E-value=0.037 Score=66.10 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=62.6
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
...+..+|.+.+... ..+-++||+.|.++.+.++....... . | ..-.......+.++......+....
T Consensus 374 ~sDv~~~G~l~k~~~--~~~wk~ry~~l~~~~l~~~~~~~~~~--~-----~---~~~~~~~l~~~~~v~pv~~~~~~~~ 441 (478)
T PTZ00267 374 TSDVTHGGYLYKYSS--DMRWKKRYFYIGNGQLRISLSENPEN--D-----G---VAPKSVNLETVNDVFPVPEVYSQKH 441 (478)
T ss_pred cCCcccceEEeccCC--CcchhhheEEecCCceEEEecccccc--C-----C---CCCccccHHHhcccccccHHhcCCC
Confidence 346778888888743 22336999999999999874421100 0 0 0000000112222222211122234
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
.|+|-|..+.++++.+.|.|.+|..+||.+|...
T Consensus 442 ~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 442 PNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred CceEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 7889998887888999999999999999999653
No 85
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.14 E-value=0.042 Score=53.16 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=51.3
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeec-cceEEeC-----------CCCCCCcceEEEEeC
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIR-RIEILDL-----------PDSDDYKNAFQIVPR 198 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~-~~~I~d~-----------~d~~~~~naF~I~~~ 198 (966)
+.|||.|=+..|+|.+.... -..++.|.++ +..|... .|.....|+|.|.+.
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~----------------~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~ 97 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSS----------------AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS 97 (121)
T ss_pred cceeEEEeCCEEEEEcCCCC----------------CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC
Confidence 58999999999999886422 1222333332 2222221 122356789999877
Q ss_pred CCccEEEEeCCchhhhhhHHHHHH
Q psy4663 199 CGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 199 ~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
++.|.|.|+|.++.++|+++|..
T Consensus 98 -~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 98 -NRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred -CcEEEEEeCCHHHHHHHHHHHHh
Confidence 67899999999999999999854
No 86
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.03 E-value=0.03 Score=54.17 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=38.3
Q ss_pred EeEEEeeccceEEeCCC----CCCCcceEEEEeC----------------CC--c-cEEEEeCCchhhhhhHHHHHH
Q psy4663 169 LKERFFIRRIEILDLPD----SDDYKNAFQIVPR----------------CG--S-PVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d----~~~~~naF~I~~~----------------~~--~-~~~l~aks~eeK~~W~~~L~~ 222 (966)
-.+.|.|.++.+....+ ...-+|+|+|... +. . .+.|.|.|.||++.||++|.+
T Consensus 45 Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 45 PTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred ceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 35678888887776643 3345889999632 00 1 156779999999999999864
No 87
>KOG1923|consensus
Probab=95.41 E-value=0.061 Score=64.94 Aligned_cols=10 Identities=30% Similarity=-0.028 Sum_probs=4.6
Q ss_pred ccccCccccch
Q psy4663 940 KKKISCLVLPV 950 (966)
Q Consensus 940 ~~~~~~~~~~~ 950 (966)
|-| ++.+=|+
T Consensus 368 k~~-~p~lnW~ 377 (830)
T KOG1923|consen 368 KTK-SPSLNWL 377 (830)
T ss_pred ccc-CCCcccc
Confidence 444 4444444
No 88
>PF15409 PH_8: Pleckstrin homology domain
Probab=95.37 E-value=0.13 Score=46.90 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=50.7
Q ss_pred ccceEEEe-cc-CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEe
Q psy4663 130 STERVCFL-FD-GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIA 207 (966)
Q Consensus 130 ~~eR~~FL-Fd-~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~a 207 (966)
-+.|||.| |+ ..|-|.+-.. .. .++|.|+|....|.-..+ ...|.|.+. ..-+.|-|
T Consensus 14 ~~kRyFvL~~~~G~LsYy~~~~---------------~~-~~rGsi~v~~a~is~~~~----~~~I~idsg-~~i~hLKa 72 (89)
T PF15409_consen 14 WHKRYFVLDFEKGTLSYYRNQN---------------SG-KLRGSIDVSLAVISANKK----SRRIDIDSG-DEIWHLKA 72 (89)
T ss_pred ceeEEEEEEcCCcEEEEEecCC---------------CC-eeEeEEEccceEEEecCC----CCEEEEEcC-CeEEEEEc
Confidence 36799999 55 5555665321 11 789999998775543222 236778766 44699999
Q ss_pred CCchhhhhhHHHHHH
Q psy4663 208 NSPEDKNNWMADLIM 222 (966)
Q Consensus 208 ks~eeK~~W~~~L~~ 222 (966)
+|+++.+.|+++|..
T Consensus 73 ~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 73 KSQEDFQRWVSALQK 87 (89)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999965
No 89
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=95.11 E-value=0.17 Score=49.30 Aligned_cols=115 Identities=14% Similarity=0.268 Sum_probs=72.7
Q ss_pred ceEeeeccEEEeec----CCCCCccceEEEeccCceEE-eecCCCC-ccccc--ccCCCCCCCceEEeEEEeeccceEEe
Q psy4663 111 NEFFREDTLLKLNI----GKKTESTERVCFLFDGLLLL-CKPNSKR-TSVSV--TAPLGGNQGEYRLKERFFIRRIEILD 182 (966)
Q Consensus 111 ~~li~eG~l~ki~~----~~~~~~~eR~~FLFd~~Ll~-cK~~~~~-~~~~~--~~~~g~~~~~y~~k~~i~l~~~~I~d 182 (966)
|+|++-|.+..+-. |..|+--+-.+|.|-..+|+ ||-.++. ..|.. ..+.....+-|+|+..|++..++|..
T Consensus 25 gdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~ 104 (160)
T cd01255 25 GDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRA 104 (160)
T ss_pred HHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeec
Confidence 56666666654321 11123346779999987766 7754321 11110 00111244679999999999999987
Q ss_pred CCCCC-CCcceEEEEeCC-------CccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 183 LPDSD-DYKNAFQIVPRC-------GSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 183 ~~d~~-~~~naF~I~~~~-------~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
....+ +-.+.|+|.+.. ++.|.|+|+++|.|+..|+.+.++..
T Consensus 105 ~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 105 SSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred CCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 65322 345678887432 22399999999999999999877543
No 90
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.08 E-value=0.11 Score=48.91 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=36.7
Q ss_pred EEeeccceEEeCCCCCCCcceEEEE---eCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 172 RFFIRRIEILDLPDSDDYKNAFQIV---PRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 172 ~i~l~~~~I~d~~d~~~~~naF~I~---~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.|.+.++.|....+.+.-+++|++. ..+.+.|.|.|.|+++.++||++++.
T Consensus 48 ~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 48 QLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRL 101 (106)
T ss_pred EEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHH
Confidence 3566677776544444557778776 23234599999999999999999854
No 91
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.68 E-value=0.15 Score=47.71 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred EEeeccceEEeCCCCCCCcceEEEEeCCCc-cEEEEeCCchhhhhhHHHH
Q psy4663 172 RFFIRRIEILDLPDSDDYKNAFQIVPRCGS-PVILIANSPEDKNNWMADL 220 (966)
Q Consensus 172 ~i~l~~~~I~d~~d~~~~~naF~I~~~~~~-~~~l~aks~eeK~~W~~~L 220 (966)
.|.|.++.+... |..+-++.|+|...+.. +++|+|.|+.++..||+++
T Consensus 53 ~~~l~sc~~r~~-~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 53 TLTLKSCSRRKT-ESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred EEeeeecccccc-CCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhh
Confidence 444555555443 34457889999877554 5999999999999999986
No 92
>PHA01732 proline-rich protein
Probab=94.48 E-value=0.096 Score=46.42 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=14.3
Q ss_pred CCCCCchhhHHHHHHHHHhhcc
Q psy4663 920 NAPGNDKWAMHEAKEAIEKSKK 941 (966)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~ 941 (966)
-+...|.=+|++++....+.+.
T Consensus 38 ~~~~~~apki~~~~skrgq~qq 59 (94)
T PHA01732 38 KPVNAEAPKIREAQSKRGQKQQ 59 (94)
T ss_pred cCcccchhHHHHHHHHHHHhhh
Confidence 3445567788888887764443
No 93
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=94.44 E-value=0.27 Score=47.74 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEeeccceEEeCC-CCCC------CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 172 RFFIRRIEILDLP-DSDD------YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 172 ~i~l~~~~I~d~~-d~~~------~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.+.|.++..+... ..+. ..++|.|.+. ++++.|.|.|.++.+-|+++|..|..
T Consensus 63 ~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~-~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 63 SIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTP-DRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred ceEEeeeEEecCCCCCCccccccccceEEEEEcC-CeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4666666544322 2211 3456666655 66899999999999999999987764
No 94
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=94.19 E-value=0.15 Score=49.27 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=50.6
Q ss_pred ceEEEeccCceEEeecCCC-CcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 132 ERVCFLFDGLLLLCKPNSK-RTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 132 eR~~FLFd~~Ll~cK~~~~-~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
.-|+.|=...|.+.|-... ...-. .. ......-.....|.|.+....-..|=..-+|.|.+...++..|.|+|.|.
T Consensus 28 ~~y~vL~g~~L~~~k~~~~~~~~~~--~~-~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~ 104 (119)
T PF15410_consen 28 QVYAVLQGGQLYFYKDEKSPASSTP--PD-IQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDE 104 (119)
T ss_dssp EEEEEEETTEEEEESSHHHHCCT-B--S----SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSH
T ss_pred EEeEEEECCEEEEEccCcccccCCc--cc-ccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCH
Confidence 5678888888888876311 00000 00 00011222333477777666655554446899999999888999999999
Q ss_pred hhhhhhHHHHHH
Q psy4663 211 EDKNNWMADLIM 222 (966)
Q Consensus 211 eeK~~W~~~L~~ 222 (966)
+|-+.||++|..
T Consensus 105 ~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 105 EEMNEWIDAINY 116 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 95
>KOG0132|consensus
Probab=93.47 E-value=1.7 Score=53.08 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=10.7
Q ss_pred CccccHHHhhhHHHHHHHHH
Q psy4663 616 EELINFSKRRRVAEITGEIQ 635 (966)
Q Consensus 616 ~~lINf~K~r~i~~ii~~i~ 635 (966)
...|-+..++.-.+++..+.
T Consensus 459 cAfI~M~~RqdA~kalqkl~ 478 (894)
T KOG0132|consen 459 CAFIKMVRRQDAEKALQKLS 478 (894)
T ss_pred eeEEEEeehhHHHHHHHHHh
Confidence 34555555555555555554
No 96
>KOG0690|consensus
Probab=93.47 E-value=0.092 Score=57.96 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=54.1
Q ss_pred ceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC---CCCCcceEEEEeCCCcc---EEE
Q psy4663 132 ERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD---SDDYKNAFQIVPRCGSP---VIL 205 (966)
Q Consensus 132 eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d---~~~~~naF~I~~~~~~~---~~l 205 (966)
.|||.||+|--++.-+..-+- ....- .+|+++.|.++.- ...-.|.|.|++-.=.. -+|
T Consensus 33 pRYF~l~~DG~~~Gyr~kP~~-----------~~~~p----~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF 97 (516)
T KOG0690|consen 33 PRYFLLFNDGTLLGYRSKPKE-----------VQPTP----EPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTF 97 (516)
T ss_pred ceEEEEeeCCceEeeccCCcc-----------CCCCc----ccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeee
Confidence 899999999888874421100 00000 2344444444331 11246889988653222 589
Q ss_pred EeCCchhhhhhHHHHHHHhhhhhhHhhhh
Q psy4663 206 IANSPEDKNNWMADLIMLNTKSMFERTLD 234 (966)
Q Consensus 206 ~aks~eeK~~W~~~L~~l~~~~~~~r~ld 234 (966)
++.|++++++|+++|..+..+.+.+...+
T Consensus 98 ~ves~~eRq~W~~AIq~vsn~l~q~e~~~ 126 (516)
T KOG0690|consen 98 YVESAEERQEWIEAIQAVSNRLKQEELMD 126 (516)
T ss_pred ecCCHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 99999999999999987665555544333
No 97
>KOG4269|consensus
Probab=93.31 E-value=0.18 Score=61.70 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=80.8
Q ss_pred ccccccchhhhhHhHHHHHHHHHccCCCC-hhHH----------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhh
Q psy4663 12 LPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRE----------SLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYN 80 (966)
Q Consensus 12 L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~----------~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~ 80 (966)
+..+|-+|+-||...-+-|-+++||++-. +|+- -|++|+......-..|++-.
T Consensus 475 ~~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~---------------- 538 (1112)
T KOG4269|consen 475 EEWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKI---------------- 538 (1112)
T ss_pred hhhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhccc----------------
Confidence 44688999999999999999999999876 6665 33334333322222221111
Q ss_pred hhhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCC
Q psy4663 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPL 160 (966)
Q Consensus 81 ~~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~ 160 (966)
+- .++.+.-+ ....|++++.+-+..+....++ -|++|||.+.|+++|-...+
T Consensus 539 -----~~-~r~~~f~k----------s~~~rq~L~d~f~~~v~~~~~~---~~~~~~~~~~ll~tk~~~~k--------- 590 (1112)
T KOG4269|consen 539 -----EP-RRLLEFLK----------SGELRQLLKDVFFVEVEEAQRK---LRHVFLFTNSLLCTKLKKLK--------- 590 (1112)
T ss_pred -----ch-hhhhhhcc----------cchhHhhhhhheeecccccccc---chhhHHHhhccchhhhhhhc---------
Confidence 00 11111111 1124678888887777544444 79999999999999864332
Q ss_pred CCCCCceEEeEEEeeccceEE
Q psy4663 161 GGNQGEYRLKERFFIRRIEIL 181 (966)
Q Consensus 161 g~~~~~y~~k~~i~l~~~~I~ 181 (966)
+..+..|..++.|++.+..|.
T Consensus 591 ~~~nq~y~~~~~Ipl~d~~v~ 611 (1112)
T KOG4269|consen 591 DGKNQQYDCKWYIPLKDLQVN 611 (1112)
T ss_pred ccccccCceeEEEeccccccC
Confidence 225568999999999877654
No 98
>KOG0132|consensus
Probab=93.19 E-value=2.4 Score=51.85 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=5.4
Q ss_pred HHHHHHHhCCC
Q psy4663 319 LQLLIERFSIP 329 (966)
Q Consensus 319 L~~Li~Ry~~~ 329 (966)
...|.++|.+.
T Consensus 219 ~~~l~~~f~~~ 229 (894)
T KOG0132|consen 219 NPKLLDRFDYP 229 (894)
T ss_pred ChhHHhcCCCC
Confidence 34455555544
No 99
>KOG4672|consensus
Probab=92.86 E-value=0.65 Score=52.51 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=8.1
Q ss_pred ccCHHHHHHhhhHHH
Q psy4663 441 VLHPVEIARQLTLLE 455 (966)
Q Consensus 441 ~~~p~eiA~QLTlid 455 (966)
..|+.+|-+++--+|
T Consensus 46 ~KDp~qi~~~m~kld 60 (487)
T KOG4672|consen 46 YKDPDQITSKMEKLD 60 (487)
T ss_pred cCCHHHHHHHHHhhc
Confidence 345555555555554
No 100
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=91.69 E-value=2.4 Score=39.97 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=58.1
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccC-ceEEeecCCCCcccccccCCCCCCCceEEeEEEeec-cceEEeCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDG-LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIR-RIEILDLPDSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~-~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~-~~~I~d~~d~~ 187 (966)
+...+++|.+.|..+-. ...|+|.|=|. -|+|+.+.. -.+||-|++. .+.+.-....
T Consensus 10 ge~Il~~g~v~K~kgl~---~kkR~liLTd~PrL~Yvdp~~-----------------~~~KGeI~~~~~l~v~~k~~~- 68 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF---AKKRQLILTDGPRLFYVDPKK-----------------MVLKGEIPWSKELSVEVKSFK- 68 (104)
T ss_dssp T--EEEEEEEEEEETTE---EEEEEEEEETTTEEEEEETTT-----------------TEEEEEE--STT-EEEECSSS-
T ss_pred CCeEEEEEEEEEeeceE---EEEEEEEEccCCEEEEEECCC-----------------CeECcEEecCCceEEEEccCC-
Confidence 45778889998874222 23799999988 888887731 2678999998 4455443322
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.|.|... ++.|.|...+.. =..|.++|..+..
T Consensus 69 ----~F~I~tp-~RtY~l~d~~~~-A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 69 ----TFFIHTP-KRTYYLEDPEGN-AQQWVEAIEEVKK 100 (104)
T ss_dssp ----EEEEEET-TEEEEEE-TTS--HHHHHHHHHHHHH
T ss_pred ----EEEEECC-CcEEEEECCCCC-HHHHHHHHHHHHH
Confidence 6999988 777888875544 4679999977554
No 101
>KOG4672|consensus
Probab=91.29 E-value=0.8 Score=51.82 Aligned_cols=8 Identities=0% Similarity=0.048 Sum_probs=3.3
Q ss_pred CCCCCCch
Q psy4663 919 FNAPGNDK 926 (966)
Q Consensus 919 ~~~~~~~~ 926 (966)
.+...|.+
T Consensus 404 ~s~a~ies 411 (487)
T KOG4672|consen 404 MSRATIES 411 (487)
T ss_pred cccccccc
Confidence 33444444
No 102
>KOG2059|consensus
Probab=91.22 E-value=0.27 Score=59.07 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=68.4
Q ss_pred eEeeeccEEEeecCCCC----CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-
Q psy4663 112 EFFREDTLLKLNIGKKT----ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS- 186 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~----~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~- 186 (966)
...++|.|.+...|.++ ..+.|||=|=+..|.|.|-.+.+ -+..|+|.++.-.+.-+.
T Consensus 564 ~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----------------~~~~Ipl~nI~avEklee~ 626 (800)
T KOG2059|consen 564 VVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----------------PIYTIPLSNIRAVEKLEEK 626 (800)
T ss_pred ceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-----------------cccceeHHHHHHHHHhhhh
Confidence 45667777777544332 23679999999999999974332 123477888765543322
Q ss_pred -CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 187 -DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 187 -~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
=+.+|.|+|+..| +...|+|++.-|-+.|+++|.+
T Consensus 627 sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~k 662 (800)
T KOG2059|consen 627 SFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRK 662 (800)
T ss_pred ccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHH
Confidence 2468999999997 5899999999999999999976
No 103
>KOG0521|consensus
Probab=91.18 E-value=0.88 Score=57.27 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=54.9
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
..|||+.=+..+.|-++... ..+ ....+|+.+.|....+..+.+++|+|.+ ..++|+++|.++
T Consensus 292 ~r~~f~~q~~~l~~~~r~~~--------------~~~--~~~~dL~~csvk~~~~~~drr~CF~iiS-~tks~~lQAes~ 354 (785)
T KOG0521|consen 292 KRRWFSIQDGQLGYQHRGAD--------------AEN--VLIEDLRTCSVKPDAEQRDRRFCFEIIS-PTKSYLLQAESE 354 (785)
T ss_pred Hhhhhhhhcccccccccccc--------------ccc--cccccchhccccCCcccccceeeEEEec-CCcceEEecCch
Confidence 35777777777766665211 111 3345677777777776656889999999 477899999999
Q ss_pred hhhhhhHHHHHH
Q psy4663 211 EDKNNWMADLIM 222 (966)
Q Consensus 211 eeK~~W~~~L~~ 222 (966)
.+...||.+|..
T Consensus 355 ~d~~~Wi~~i~n 366 (785)
T KOG0521|consen 355 KDCQDWISALQN 366 (785)
T ss_pred hHHHHHHHHHHH
Confidence 999999999844
No 104
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.17 E-value=2.9 Score=39.62 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=30.9
Q ss_pred CCCCcceEEEEeCCCc-cEEEEeCCchhhhhhHHHHHHHh
Q psy4663 186 SDDYKNAFQIVPRCGS-PVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~-~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..++..-|+|...... .+.|.|.|.+||++|+.+|.+-+
T Consensus 71 ~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 71 AKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 3457788999876433 38889999999999999997743
No 105
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.67 E-value=0.53 Score=58.88 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=13.7
Q ss_pred CCCCchhhHHHHHHHHHhhccc
Q psy4663 921 APGNDKWAMHEAKEAIEKSKKK 942 (966)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~ 942 (966)
--|+-.|.+.+....+-.+.|.
T Consensus 53 g~~~~~~r~S~k~~k~g~kak~ 74 (2365)
T COG5178 53 GNPIYSLRVSDKPVKLGNKAKT 74 (2365)
T ss_pred CCcceeeecccchhHhhhhhhh
Confidence 3567777777766555555444
No 106
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=86.56 E-value=6.1 Score=47.60 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=31.8
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
+.+|.|-+..+.++++.|+|.+.+|+..||.+|.+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQS 487 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHH
Confidence 35789999999899999999999999999999865
No 107
>KOG4849|consensus
Probab=83.98 E-value=20 Score=40.09 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=8.5
Q ss_pred HHHHH-HHHHhhccccCccc
Q psy4663 929 MHEAK-EAIEKSKKKISCLV 947 (966)
Q Consensus 929 ~~~~~-~~~~~~~~~~~~~~ 947 (966)
+.||. |-|-++.+-|+.+.
T Consensus 357 lSeAEFEdiM~RNraiSSSA 376 (498)
T KOG4849|consen 357 LSEAEFEDIMTRNRAISSSA 376 (498)
T ss_pred chHHHHHHHHhhcchhhHHH
Confidence 55553 33444444444443
No 108
>KOG0260|consensus
Probab=83.50 E-value=27 Score=45.15 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=29.3
Q ss_pred cccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhh
Q psy4663 15 LFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQ 65 (966)
Q Consensus 15 lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~ 65 (966)
-+..=+|++..|.||.+-+----.+. .|.+.......+|++.-.++-+...
T Consensus 642 ~f~~~iQ~lin~wll~~gfsigIgDtiad~~t~~~iq~~I~~ak~dv~~vi~ 693 (1605)
T KOG0260|consen 642 GFFDSIQTLINSWLLREGFSIGIGDTIADAATMCVIQNTIKEAKRDVLAVIR 693 (1605)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999988844332222333 6666666666666555555544443
No 109
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.99 E-value=9.1 Score=36.89 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=30.0
Q ss_pred CCCcceEEEEeCC------CccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 187 DDYKNAFQIVPRC------GSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 187 ~~~~naF~I~~~~------~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.++.+-|+|.... ..+..|.|.|..||++|+.+|..|+.
T Consensus 76 kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 76 KDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred ccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 3577789987543 12377899999999999999988763
No 110
>KOG0307|consensus
Probab=81.29 E-value=97 Score=40.13 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc-------------ccccCCCCCCCCCCCccccccccccccc---
Q psy4663 721 VNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFA-------------PIMLSNANGSQSPGSVSTAFSMFSTQSV--- 784 (966)
Q Consensus 721 ~~~~~~~~~~~~~~~p~sp~~p~tPp~~~~~~~~~~-------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~--- 784 (966)
+.....+..+.....-+...++.+|..++.+.+.-. .....++...+-|.|...++++ ++.+
T Consensus 695 ~~~~~~P~~~~~~~~~~~~~~~~~~~t~~~~~~qP~~~~p~~~~~~~~~~~~~~~P~~~~~pqP~p~s~~~--pa~s~~~ 772 (1049)
T KOG0307|consen 695 SAGHQSPPLTQLRQAVGAAPTPKQPTTSSIGVTQPQCYSPTTQASTPGNQPPMAPPYPNPQPQPYPLSTGG--PAMSRPP 772 (1049)
T ss_pred cccccCCCccccccccccCCCCCCCCCCCCCcCCCccccCCCCCCCCCCCCCcCCCCcCCCCCCCCCCCCC--ccccCCC
Q ss_pred --ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4663 785 --QSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPS 862 (966)
Q Consensus 785 --~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~ppp~pp~~~~~~~~~~~~~~~~~~~~~ppp~pp~~p~~~~ 862 (966)
..+.+...+--|.|+|..+.++.+.....|.....|.+|--+-.|+++....+....++..+..-|.+++|-.+. .
T Consensus 773 ~qpPt~~~g~p~~p~p~p~~~~~p~~~s~~~p~~~stP~~~~~~~~P~~~~~~~~~~~~~~~~~~S~p~~~~pv~sg--s 850 (1049)
T KOG0307|consen 773 QQPPTSANGFPYNPSPAPQPSYTPAPQSNARPNSASTPTPPAFSFTPPPSSGAADQYSQPPAAPPSFPYAPNPVTSG--S 850 (1049)
T ss_pred CCCCccccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccCCCCCCCCCCC--C
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4663 863 LSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPGN 924 (966)
Q Consensus 863 ~~~~~~~~ppppp~p~~~~~~~~~~p~p~pppp~~~~~~~~pp~~~p~~~~~~~~~~~~~~~ 924 (966)
..+.|..+.|++--..+|+. .+..+.++.|+...|+.+.--|..-|.+.+--....-||+
T Consensus 851 ~~P~~~~~~p~~~~~~~p~~--~g~~~~~~iP~~~~P~a~~~~p~~~P~~~~~sv~p~~P~~ 910 (1049)
T KOG0307|consen 851 VNPAPYGPGPPGSWNQPPAL--QGSYRKPKIPPTVMPPAPITSPNGGPSQNPQSVQPQSPPI 910 (1049)
T ss_pred CCCCCCCCCCCCcccCCCcc--cCCCCCCCCCcccCCCccccCCCCCCCCCcccccCCCCCC
No 111
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=78.86 E-value=1.7 Score=40.34 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=29.9
Q ss_pred CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 189 YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 189 ~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
-.|.|-+...++..|+|-|.+.++.+.||++|..
T Consensus 73 ~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 73 NLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 4678999888777899999999999999999864
No 112
>KOG0260|consensus
Probab=78.80 E-value=63 Score=42.03 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=33.9
Q ss_pred ccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcC-Ch-hhHHHHHHhhcc-ccccchHHHHhhcCH
Q psy4663 493 NFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLN-NF-NGVLAIVSALGS-ASVYRLKCTFQALPA 558 (966)
Q Consensus 493 ~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~-NF-nsl~aI~saL~s-s~I~RLk~Tw~~ls~ 558 (966)
+++-|.....| +|+++..+++.+.+.-..++ .| +.+..|.++=+. ..|.||+-+-+....
T Consensus 1174 ~ispwlLrlel------Dr~~m~dk~ltm~~ia~~i~~~f~~d~~~i~~ddna~klv~r~ri~~~~e~D 1236 (1605)
T KOG0260|consen 1174 RISPWLLRLEL------DRASMTDKKLTMEQIAEKINRGFGSDLACIFSDDNAEKLVLRLRIAKEEEDD 1236 (1605)
T ss_pred hcChHHHHhhh------hhhhcccccccHHHHHHHHHhhccCCCceeecccCCcceEEEEEecCccchh
Confidence 67777766554 47777777776655544322 23 234455555444 346777766555433
No 113
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=78.44 E-value=9 Score=47.30 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=65.1
Q ss_pred eEeeeccEEEeecCCCC----CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC--
Q psy4663 112 EFFREDTLLKLNIGKKT----ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-- 185 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~----~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-- 185 (966)
...+||=+..+ |..+ -...|||+|=.+.|-|+|++... +.--+|.-+-=-+++|+|..-
T Consensus 3 ~~~~eGW~y~~--g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~-------------~~~pirs~~id~~~rVed~Gr~~ 67 (719)
T PLN00188 3 KVVYEGWMVRY--GRRKIGRSYIHMRYFVLESRLLAYYKKKPQD-------------NQVPIKTLLIDGNCRVEDRGLKT 67 (719)
T ss_pred cceEeeEEEEE--cccccccccceeEEEEEecchhhhcccCCcc-------------ccccceeeccCCCceEeecCceE
Confidence 34578888766 3322 12479999999999999985321 111222111112556666542
Q ss_pred -CCCCcceEEEEeCCCc--cEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 186 -SDDYKNAFQIVPRCGS--PVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 186 -~~~~~naF~I~~~~~~--~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
-...-+.|.|+++-+. +.++.|.|.||=.+||++|..+...
T Consensus 68 ~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q 111 (719)
T PLN00188 68 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQ 111 (719)
T ss_pred EcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhh
Confidence 1234567888876544 3999999999999999999887664
No 114
>KOG0391|consensus
Probab=77.33 E-value=1.1e+02 Score=40.21 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHhhhHHHHHHhccCCccccccc
Q psy4663 446 EIARQLTLLESEYYRAVKPSEIVGS 470 (966)
Q Consensus 446 eiA~QLTlid~~lF~~I~p~Ell~~ 470 (966)
++|-|=-=+..++|++-...||++.
T Consensus 1405 evaiqggdfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1405 EVAIQGGDFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred HHhhccCCccHHHHhhhhHHHHhcC
Confidence 3444444344455565555566543
No 115
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=75.99 E-value=13 Score=34.29 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=44.5
Q ss_pred CCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 164 QGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 164 ~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
++.|+....-.|+++..+|..+.+.-..+|.|.-. +.|...|.|.+||...+..|.++-
T Consensus 30 ~g~f~i~ktW~L~eL~~I~~~~~~~~~~~F~l~~~--k~y~W~a~s~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 30 NGSFQIGKTWDLDELKAIDGINPDKDTPEFDLTFD--KPYYWEASSAKEKNTFIRSLWKLY 88 (91)
T ss_dssp CS-EEEEEEEEGGG--EEEE-SSS--TTEEEEESS--SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeEEehhhceeeeeecCCCCCcCEEEEEC--CCcEEEeCCHHHHHHHHHHHHHHh
Confidence 34599999999999999998876544557887654 379999999999999999998754
No 116
>PHA03378 EBNA-3B; Provisional
Probab=73.58 E-value=72 Score=39.07 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q psy4663 909 SFGKQVPM 916 (966)
Q Consensus 909 p~~~~~~~ 916 (966)
|..+|.++
T Consensus 800 PQ~~P~~~ 807 (991)
T PHA03378 800 PQAGPTSM 807 (991)
T ss_pred CCCCCccc
Confidence 33344444
No 117
>PF15406 PH_6: Pleckstrin homology domain
Probab=73.57 E-value=4.6 Score=38.09 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.2
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHH
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLI 221 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~ 221 (966)
|.|.+... +.+.+|.|.|.+||..|+.+|.
T Consensus 81 ~kF~f~~~-G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 81 NKFHFKIK-GHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ceEEEEeC-CceeeeecCCHHHhccHHHHhh
Confidence 44555554 5679999999999999999884
No 118
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=73.25 E-value=5.2 Score=37.73 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=57.2
Q ss_pred EeeeccEEEeecCCC--CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-CCCC
Q psy4663 113 FFREDTLLKLNIGKK--TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-SDDY 189 (966)
Q Consensus 113 li~eG~l~ki~~~~~--~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-~~~~ 189 (966)
-|.+|.+.|. |+- ..=|-|||.||-+-|=.- ..++ .++.++ |.|+++.=+..+- .-.-
T Consensus 3 cIvhGyi~KL--GGPFls~WQ~Ry~~LfPNRLE~~-~~~~-----------~~~~eL-----i~M~~i~~V~~e~~~iK~ 63 (116)
T cd01240 3 CIVHGYIKKL--GGPFLSQWQTRYFKLYPNRLELY-GESE-----------ANKPEL-----ITMDQIEDVSVEFQQIKE 63 (116)
T ss_pred eEEeeehhhh--CCHHHHHHHHHHheeCcceeeec-cccc-----------ccCCcE-----EEeehhhhcchhheeecc
Confidence 3778888888 321 122679999998877651 1111 111222 3344332111000 0012
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
.|+..|.-+++..+++.+.+.-+=.+|...|....
T Consensus 64 ~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 64 ENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred CceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHH
Confidence 46788888878889999999999999999997643
No 119
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.90 E-value=18 Score=34.53 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=26.6
Q ss_pred cceEEEEeCCC---ccEEEEeCCchhhhhhHHHHHH
Q psy4663 190 KNAFQIVPRCG---SPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 190 ~naF~I~~~~~---~~~~l~aks~eeK~~W~~~L~~ 222 (966)
..+|.|....+ +.+.|+|.|.++-+.|+..|..
T Consensus 79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 35788886644 3499999999999999999854
No 120
>KOG0119|consensus
Probab=72.27 E-value=1.5e+02 Score=35.30 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHH
Q psy4663 507 NLEERIAIVSRAIE 520 (966)
Q Consensus 507 ~~~~Ra~~i~kfI~ 520 (966)
+++.-+++|+.+|+
T Consensus 216 ki~~Ai~vienli~ 229 (554)
T KOG0119|consen 216 KIKKAIAVIENLIQ 229 (554)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555544
No 121
>KOG4849|consensus
Probab=69.64 E-value=69 Score=36.11 Aligned_cols=7 Identities=0% Similarity=-0.543 Sum_probs=2.6
Q ss_pred CCCCCCC
Q psy4663 918 QFNAPGN 924 (966)
Q Consensus 918 ~~~~~~~ 924 (966)
+.++-|+
T Consensus 351 ~p~~~pl 357 (498)
T KOG4849|consen 351 NPQMFPL 357 (498)
T ss_pred CCCCccc
Confidence 3333343
No 122
>KOG0566|consensus
Probab=66.25 E-value=42 Score=42.60 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=13.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHh
Q psy4663 505 TENLEERIAIVSRAIEIMMVLN 526 (966)
Q Consensus 505 ~~~~~~Ra~~i~kfI~IA~~c~ 526 (966)
+.+.++|- +-+..||..++
T Consensus 686 ~snv~ERn---~DY~tI~r~l~ 704 (1080)
T KOG0566|consen 686 QSNVEERN---EDYKTIARKLR 704 (1080)
T ss_pred cchHhhhh---hhHHHHHHhcc
Confidence 45778875 46778887763
No 123
>PF15408 PH_7: Pleckstrin homology domain
Probab=65.13 E-value=4.3 Score=36.42 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=51.5
Q ss_pred eccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC---Ccce
Q psy4663 116 EDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD---YKNA 192 (966)
Q Consensus 116 eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~---~~na 192 (966)
||.|.... +...+.|.+.|=.+++++.--+.+ ..-+.|.+...+. .--.++-.+-+.+ ..++
T Consensus 1 EGYLY~~E---~~si~rRF~~L~~K~~~~~~~KGG-----------~~L~sF~L~~s~~-s~Pm~~~~~A~~N~Gi~A~G 65 (104)
T PF15408_consen 1 EGYLYRDE---DSSIQRRFVMLRSKQFNMYEDKGG-----------QYLCSFQLSSSVV-SHPMVNFSQAVPNLGINAFG 65 (104)
T ss_pred CCeEEEec---cchHHHHHHhhhhceeEEecccCC-----------ceeeeeehhhhhh-hcccccccccCCCCCeeEEE
Confidence 56676653 222346778888888877644211 1122344432211 0001111111212 1235
Q ss_pred EEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 193 FQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 193 F~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
|...+.+++.+.++|.|.+--+.|++++.+
T Consensus 66 ~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 66 FLMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 666788788899999999999999998743
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=64.62 E-value=58 Score=41.87 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHhhccccCccccchhhHh
Q psy4663 925 DKWAMHEAKEAIEKSKKKISCLVLPVEKIH 954 (966)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (966)
++| .+..+++.+++|+..-.+|..-.|+
T Consensus 514 ~~W--~~Il~~V~~~~r~~~~~~l~~a~v~ 541 (824)
T PRK07764 514 ERW--PEILAAVPKRSRKTWAILLPEATVL 541 (824)
T ss_pred HHH--HHHHHHHhhccHHHHHHhcccceee
Confidence 445 4677777777755455555554444
No 125
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=63.65 E-value=31 Score=37.69 Aligned_cols=13 Identities=15% Similarity=0.223 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHH
Q psy4663 925 DKWAMHEAKEAIE 937 (966)
Q Consensus 925 ~~~~~~~~~~~~~ 937 (966)
..|...|+.+..+
T Consensus 125 ~GW~~Sda~~L~y 137 (297)
T PF07174_consen 125 AGWVESDASHLDY 137 (297)
T ss_pred CCccccccceeec
Confidence 3588777766555
No 126
>KOG0566|consensus
Probab=63.43 E-value=91 Score=39.82 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy4663 284 LYKLVERL 291 (966)
Q Consensus 284 L~kLIe~L 291 (966)
+.+|+..+
T Consensus 363 ~~kL~~~i 370 (1080)
T KOG0566|consen 363 LHKLLYLI 370 (1080)
T ss_pred hHHHHHHH
Confidence 44444433
No 127
>KOG2893|consensus
Probab=62.12 E-value=96 Score=33.20 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=4.2
Q ss_pred HHhhhhcccC
Q psy4663 673 YEQSLKIEPR 682 (966)
Q Consensus 673 y~lSl~iEPr 682 (966)
|...++-||.
T Consensus 90 ~r~~~de~~~ 99 (341)
T KOG2893|consen 90 YRGAADEEPD 99 (341)
T ss_pred hhhhhhcCch
Confidence 4444444443
No 128
>KOG1925|consensus
Probab=58.42 E-value=14 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=12.7
Q ss_pred HHHHHHHHhhccccCccccchhhHh
Q psy4663 930 HEAKEAIEKSKKKISCLVLPVEKIH 954 (966)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (966)
+......|.+++| ++|+.|+-
T Consensus 321 ~r~~~LFEsr~~~----~~P~KK~~ 341 (817)
T KOG1925|consen 321 ARLEHLFESRAKE----VLPSKKAG 341 (817)
T ss_pred HHHHHHHHHhhhh----hccchhhc
Confidence 3344556666666 77877763
No 129
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.29 E-value=68 Score=31.99 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHccccCCChhHHHH--Hhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHH
Q psy4663 281 GATLYKLVERLTYHIYADPAFVRT--FLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNV 357 (966)
Q Consensus 281 agTL~kLIe~Lt~~~~~D~~Fv~~--FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~v 357 (966)
..+++++|++.|+....++++.-+ +--.- ..-..+.+.+..|..|....++ .+|++-+.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~-----------------~vql~AL~L 64 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNP-----------------NVQLYALLL 64 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh-----------------HHHHHHHHH
Confidence 357999999999876555544211 11111 1245678888888888765332 267888999
Q ss_pred HHHHhhhcccccc
Q psy4663 358 LRHWVDHHFYDFE 370 (966)
Q Consensus 358 L~~Wi~~~~~DF~ 370 (966)
|..-+.+|...|.
T Consensus 65 Le~~vkNCG~~fh 77 (142)
T cd03569 65 LESCVKNCGTHFH 77 (142)
T ss_pred HHHHHHHCCHHHH
Confidence 9999999987775
No 130
>KOG3723|consensus
Probab=58.26 E-value=7.6 Score=46.05 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=58.6
Q ss_pred eeeccEEEeec--CCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEe-CC---CCC
Q psy4663 114 FREDTLLKLNI--GKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD-LP---DSD 187 (966)
Q Consensus 114 i~eG~l~ki~~--~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d-~~---d~~ 187 (966)
+.||.|..-.+ .--|+-.-|||-|=.-.|.|.|..++. .+.+ -.|+|++++-+. +. ...
T Consensus 736 ~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~----------dS~~-----~~IDl~~IRSVk~v~~kr~~r 800 (851)
T KOG3723|consen 736 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD----------DSDD-----CPIDLSKIRSVKAVAKKRRDR 800 (851)
T ss_pred hhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCC----------CCCC-----CCccHHHhhhHHHHHhhhhhc
Confidence 56777762210 011122478888877777777764331 1111 234555443222 11 123
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.+..||||...|+. ++|-||+...-++|+.+|.-...
T Consensus 801 slpKAFEIFTAD~T-~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 801 SLPKAFEIFTADKT-YILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred ccchhhheeecCce-EEeecccccCHHHHHHHHHHHHH
Confidence 46779999999775 99999999999999999865433
No 131
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=57.73 E-value=54 Score=31.29 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=28.8
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.+-|-|... +..+.|-|.|..+++.|.+.|..+..
T Consensus 70 ~~yfgL~T~-~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 70 RRYFGLKTA-QGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred EEEEEEEec-CcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 456888877 55699999999999999999976544
No 132
>KOG1785|consensus
Probab=56.38 E-value=29 Score=39.68 Aligned_cols=7 Identities=57% Similarity=0.667 Sum_probs=3.6
Q ss_pred hhcccCC
Q psy4663 677 LKIEPRY 683 (966)
Q Consensus 677 l~iEPr~ 683 (966)
.+|||=+
T Consensus 382 vkIEPCG 388 (563)
T KOG1785|consen 382 VKIEPCG 388 (563)
T ss_pred ccccccc
Confidence 4556543
No 133
>PLN02866 phospholipase D
Probab=55.06 E-value=37 Score=44.00 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 187 DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 187 ~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..++++|.|.+. ++++.|.|+|..+-..|+++|....
T Consensus 271 ~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 271 NPLRFGFKVTCG-NRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred CCCcceEEEecC-ceEEEEEECCHHHHHHHHHHHHHHH
Confidence 457899999877 6779999999999999999997754
No 134
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.93 E-value=79 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=48.1
Q ss_pred CHHHHHHHHccccCCChhHH---HHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHH
Q psy4663 283 TLYKLVERLTYHIYADPAFV---RTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLR 359 (966)
Q Consensus 283 TL~kLIe~Lt~~~~~D~~Fv---~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~ 359 (966)
+++++|++.|+....++++. ++-=+--.....+.+.+..|..|.+..++ .++++-+.+|.
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~-----------------~v~l~AL~LLe 63 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQE-----------------KEALQALTVLE 63 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHH
Confidence 47899999998765555442 11111112345667777777777654322 26788999999
Q ss_pred HHhhhccccccc
Q psy4663 360 HWVDHHFYDFEQ 371 (966)
Q Consensus 360 ~Wi~~~~~DF~~ 371 (966)
.=+++|...|..
T Consensus 64 ~~vkNCG~~fh~ 75 (139)
T cd03567 64 ACMKNCGERFHS 75 (139)
T ss_pred HHHHHcCHHHHH
Confidence 999999988863
No 135
>KOG2675|consensus
Probab=54.27 E-value=11 Score=43.73 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy4663 373 AHLLEQLKLFLET 385 (966)
Q Consensus 373 ~~ll~~L~~Fl~~ 385 (966)
+.+.++|+.-..+
T Consensus 5 ~~lvkRLE~a~~R 17 (480)
T KOG2675|consen 5 EKLVKRLESATSR 17 (480)
T ss_pred hHHHHHHHHHHHH
Confidence 3445555444443
No 136
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=52.83 E-value=1e+02 Score=37.75 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=73.9
Q ss_pred HHhhhHHHHHHhccCCccc---ccccc---ccCCCCCCCChhHHHHHHHHhccchhh------hhhhcc------cCCHH
Q psy4663 448 ARQLTLLESEYYRAVKPSE---IVGSA---WTKSNKEEKSPNLLKIIKHTTNFTRWL------EKTIVE------TENLE 509 (966)
Q Consensus 448 A~QLTlid~~lF~~I~p~E---ll~~~---w~k~~k~~~spni~~~i~~fN~ls~wV------~~~IL~------~~~~~ 509 (966)
|+|+|-.-..++++=--.| .++.. ..... ...-|.+.+..+-++-+|+ .+.|+. -.-+.
T Consensus 171 aeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~---~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd 247 (1053)
T COG5101 171 AEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR---DESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSMPD 247 (1053)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCc
Confidence 7888877777666533333 33321 11111 2233555666666666665 222322 12356
Q ss_pred HHHHHHHHHHHHHHHHh-hcCC----------hhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhccchhHHHH
Q psy4663 510 ERIAIVSRAIEIMMVLN-DLNN----------FNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKY 578 (966)
Q Consensus 510 ~Ra~~i~kfI~IA~~c~-~L~N----------Fnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~y 578 (966)
-|+..++..++|+.--+ ..-| |+..+-.+...+..--.+++.+++..+...+...++|..+...-|..|
T Consensus 248 ~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~ 327 (1053)
T COG5101 248 TRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY 327 (1053)
T ss_pred hhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH
Confidence 79999999999987653 2333 343333333344444567888888888776666666665534444555
Q ss_pred HHHH
Q psy4663 579 QERL 582 (966)
Q Consensus 579 R~~l 582 (966)
+..|
T Consensus 328 ~~lL 331 (1053)
T COG5101 328 ISLL 331 (1053)
T ss_pred HHHh
Confidence 4443
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.70 E-value=72 Score=39.42 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHh
Q psy4663 315 PLNFLQLLIERF 326 (966)
Q Consensus 315 p~eLL~~Li~Ry 326 (966)
...++..|.+|.
T Consensus 160 ~~kll~tI~SR~ 171 (585)
T PRK14950 160 VHKVPATILSRC 171 (585)
T ss_pred hhhhhHHHHhcc
Confidence 344555555544
No 138
>KOG1785|consensus
Probab=52.34 E-value=38 Score=38.77 Aligned_cols=12 Identities=58% Similarity=0.938 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCC
Q psy4663 819 GLYSPPPLPPRT 830 (966)
Q Consensus 819 ~~~~ppp~pp~~ 830 (966)
++.++||.||+.
T Consensus 480 ~pls~PPlPPr~ 491 (563)
T KOG1785|consen 480 PPLSLPPLPPRL 491 (563)
T ss_pred CCCCCCCCCCCc
Confidence 444667777763
No 139
>KOG3640|consensus
Probab=48.26 E-value=29 Score=43.85 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=50.6
Q ss_pred ceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC----CCCCCcceEEEE----e-CCC--
Q psy4663 132 ERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP----DSDDYKNAFQIV----P-RCG-- 200 (966)
Q Consensus 132 eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~----d~~~~~naF~I~----~-~~~-- 200 (966)
-||++|=.+++.|-|--. ....=...++|+|.++.-..++ |.....|.|.|. - .|+
T Consensus 1010 RyWc~L~gg~I~fWk~Pd-------------DEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep 1076 (1116)
T KOG3640|consen 1010 RYWCALHGGEIKFWKYPD-------------DEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEP 1076 (1116)
T ss_pred hhhHHhcCCeeeeecCcc-------------hhcccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCc
Confidence 466777777777766410 0001123456888877544433 445678999987 1 111
Q ss_pred ----c--cEEEEeCCchhhhhhHHHHHH
Q psy4663 201 ----S--PVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 201 ----~--~~~l~aks~eeK~~W~~~L~~ 222 (966)
. +..|.|.|.||.+.||.+|.+
T Consensus 1077 ~~ie~r~Rv~LaADTkeel~~Wls~iN~ 1104 (1116)
T KOG3640|consen 1077 LLIEKRLRVMLAADTKEELQSWLSAIND 1104 (1116)
T ss_pred chhhhcceeeeecccHHHHHHHHHHHHH
Confidence 1 478999999999999999966
No 140
>KOG1985|consensus
Probab=45.61 E-value=3.6e+02 Score=34.25 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q psy4663 931 EAKEAIEK 938 (966)
Q Consensus 931 ~~~~~~~~ 938 (966)
+.|+.++|
T Consensus 182 ~t~sLl~k 189 (887)
T KOG1985|consen 182 QTQSLLKK 189 (887)
T ss_pred ccHHHHHh
Confidence 44555543
No 141
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.63 E-value=1.1e+02 Score=30.57 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHccccCCChhHHHH--Hhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHH
Q psy4663 284 LYKLVERLTYHIYADPAFVRT--FLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRH 360 (966)
Q Consensus 284 L~kLIe~Lt~~~~~D~~Fv~~--FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~ 360 (966)
++++|++.|+....++++--+ +--.- ..-..+.+.+..|..|....++ .++++-+.+|..
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~-----------------~v~l~AL~LLe~ 63 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDP-----------------NVQLRALTLLDA 63 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHH
Confidence 478999999876544444111 11111 1246678888888888765432 267888999999
Q ss_pred Hhhhccccccc
Q psy4663 361 WVDHHFYDFEQ 371 (966)
Q Consensus 361 Wi~~~~~DF~~ 371 (966)
=+++|...|..
T Consensus 64 ~vkNCG~~fh~ 74 (144)
T cd03568 64 CAENCGKRFHQ 74 (144)
T ss_pred HHHHCCHHHHH
Confidence 99999888853
No 142
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=43.55 E-value=75 Score=30.94 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHcccc-CCCh--hHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHHHhh
Q psy4663 287 LVERLTYHI-YADP--AFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVD 363 (966)
Q Consensus 287 LIe~Lt~~~-~~D~--~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~Wi~ 363 (966)
||.+.|+.. ..-+ .|.++==+||.+..+-.++++.|.+|-+-..+ -|+.+++.+|++-++
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~-----------------hVK~K~Lrilk~l~~ 67 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSP-----------------HVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCC-----------------cchHHHHHHHHHHHh
Confidence 566666532 1122 34455667888888888999999999865322 377899999999999
Q ss_pred hccccccc
Q psy4663 364 HHFYDFEQ 371 (966)
Q Consensus 364 ~~~~DF~~ 371 (966)
....+|..
T Consensus 68 ~G~~~f~~ 75 (122)
T cd03572 68 KGNSDFKR 75 (122)
T ss_pred hCCHHHHH
Confidence 98888854
No 143
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.91 E-value=56 Score=31.28 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEeCCchhhhhhHHHHHHHh
Q psy4663 203 VILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 203 ~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..|+|.+++..+.||.+|+-+.
T Consensus 87 k~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 87 KYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred eeeccCCHHHHHHHHHHHHHHh
Confidence 6789999999999999996543
No 144
>KOG0119|consensus
Probab=42.09 E-value=6.9e+02 Score=30.04 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy4663 513 AIVSRAIEIMMV 524 (966)
Q Consensus 513 ~~i~kfI~IA~~ 524 (966)
+.|++-|.|.+.
T Consensus 215 eki~~Ai~vien 226 (554)
T KOG0119|consen 215 EKIKKAIAVIEN 226 (554)
T ss_pred HHHHHHHHHHHH
Confidence 344455544443
No 145
>KOG1451|consensus
Probab=41.23 E-value=1e+02 Score=37.22 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCCCCcceEEEEeCCCcc-EEEEeCCchhhhhhHHHH
Q psy4663 185 DSDDYKNAFQIVPRCGSP-VILIANSPEDKNNWMADL 220 (966)
Q Consensus 185 d~~~~~naF~I~~~~~~~-~~l~aks~eeK~~W~~~L 220 (966)
|.-+-+++|.|...+... ++++|-|+++++.||++.
T Consensus 327 dSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAM 363 (812)
T KOG1451|consen 327 DSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAM 363 (812)
T ss_pred cccccceeeeeeecccCCeeehHhhhhhHHHHHHHHh
Confidence 333457889888775554 999999999999999976
No 146
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=40.19 E-value=1.3e+02 Score=36.23 Aligned_cols=14 Identities=7% Similarity=-0.251 Sum_probs=8.4
Q ss_pred ccccchhhHhhhHh
Q psy4663 945 CLVLPVEKIHYLLS 958 (966)
Q Consensus 945 ~~~~~~~~~~~~~~ 958 (966)
.|+-|.+-|++|.+
T Consensus 326 ec~sW~~avaaL~~ 339 (582)
T PF03276_consen 326 ECGSWASAVAALYQ 339 (582)
T ss_pred ccccHHHHHHHHHH
Confidence 46666666666653
No 147
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.73 E-value=1.6e+02 Score=28.96 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHHHHHHHccccCCChhHHHH--Hhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHH
Q psy4663 284 LYKLVERLTYHIYADPAFVRT--FLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRH 360 (966)
Q Consensus 284 L~kLIe~Lt~~~~~D~~Fv~~--FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~ 360 (966)
++++|++.|+....++++--+ |--.- ..-..+.+.+..|..|....++ .++++-+.+|..
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~-----------------~v~l~AL~lLe~ 63 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNP-----------------HVALLALTLLDA 63 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHH
Confidence 368999999876555544211 11111 1235678888888888875432 267888999999
Q ss_pred Hhhhcccccc
Q psy4663 361 WVDHHFYDFE 370 (966)
Q Consensus 361 Wi~~~~~DF~ 370 (966)
-+.+|...|.
T Consensus 64 ~vkNcg~~f~ 73 (133)
T smart00288 64 CVKNCGSKFH 73 (133)
T ss_pred HHHHCCHHHH
Confidence 9999987775
No 148
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.68 E-value=1.5e+02 Score=36.62 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=6.0
Q ss_pred HHhhhhhhhhc
Q psy4663 596 YLTNILHIEEG 606 (966)
Q Consensus 596 ~L~DL~~i~eg 606 (966)
++.||..+..|
T Consensus 289 ~lR~Ll~lk~g 299 (585)
T PRK14950 289 YLRQVMLLNSG 299 (585)
T ss_pred HHHHHHHHhhc
Confidence 45566555544
No 149
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=38.43 E-value=56 Score=35.89 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHccC--CCCccchhHH
Q psy4663 572 NDHFRKYQERLRSIN--PPCVPFFGMY 596 (966)
Q Consensus 572 ~~n~~~yR~~l~~~~--~P~IPflGv~ 596 (966)
++.|..+|..++.++ .|.+|+=-++
T Consensus 8 ~K~yGs~RSIVR~IGt~LPL~pcpR~~ 34 (253)
T PF05308_consen 8 NKPYGSSRSIVRRIGTNLPLKPCPRPH 34 (253)
T ss_pred CCCCcchHHHHHHHhccCCCCCCCCce
Confidence 445566666666542 3444443333
No 150
>KOG0162|consensus
Probab=38.41 E-value=1.9e+02 Score=36.07 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=12.4
Q ss_pred CHHHHHHhhhHHHHHHhccCCccc
Q psy4663 443 HPVEIARQLTLLESEYYRAVKPSE 466 (966)
Q Consensus 443 ~p~eiA~QLTlid~~lF~~I~p~E 466 (966)
.+.+|.+.|.--.=.+-+.|+|.|
T Consensus 568 qANdLVeTLmKc~P~YIR~IKPNe 591 (1106)
T KOG0162|consen 568 QANDLVETLMKCQPHYIRCIKPNE 591 (1106)
T ss_pred hHHHHHHHHHhcCcceeEeeCCCC
Confidence 344555555554445555555544
No 151
>KOG4590|consensus
Probab=38.24 E-value=1.6e+02 Score=34.55 Aligned_cols=8 Identities=25% Similarity=0.792 Sum_probs=3.2
Q ss_pred hcCCCCCC
Q psy4663 605 EGNPDYLP 612 (966)
Q Consensus 605 egnpd~i~ 612 (966)
+.+..++.
T Consensus 5 d~~k~W~p 12 (409)
T KOG4590|consen 5 DSQKGWLP 12 (409)
T ss_pred cccccccc
Confidence 33444443
No 152
>KOG0391|consensus
Probab=38.03 E-value=3e+02 Score=36.56 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=6.5
Q ss_pred cceEeeeccEE
Q psy4663 110 CNEFFREDTLL 120 (966)
Q Consensus 110 ~~~li~eG~l~ 120 (966)
..-||.++.-.
T Consensus 911 ~ssfV~e~l~~ 921 (1958)
T KOG0391|consen 911 GSSFVAEPLEY 921 (1958)
T ss_pred CcccccCceec
Confidence 34677766544
No 153
>PRK09752 adhesin; Provisional
Probab=37.56 E-value=29 Score=45.21 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=5.7
Q ss_pred CCCccchhH
Q psy4663 587 PPCVPFFGM 595 (966)
Q Consensus 587 ~P~IPflGv 595 (966)
.-.|||...
T Consensus 695 ~~~~~~~~~ 703 (1250)
T PRK09752 695 ADIIPYASS 703 (1250)
T ss_pred hhcccchhe
Confidence 356888753
No 154
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.91 E-value=1.4e+02 Score=29.36 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=47.9
Q ss_pred cCHHHHHHHHccccCCChhHHHHH-hhh--cccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHH
Q psy4663 282 ATLYKLVERLTYHIYADPAFVRTF-LTT--YRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVL 358 (966)
Q Consensus 282 gTL~kLIe~Lt~~~~~D~~Fv~~F-LlT--YRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL 358 (966)
..+++||++.|+....++++..+. ++- =+.-..+.+.+..|..|+....+ .++++.+.+|
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~-----------------~vq~~aL~ll 66 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNP-----------------NVQLLALTLL 66 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSH-----------------HHHHHHHHHH
T ss_pred ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHH
Confidence 457899999998866666552221 111 12256678888888888876332 2678889999
Q ss_pred HHHhhhcccccc
Q psy4663 359 RHWVDHHFYDFE 370 (966)
Q Consensus 359 ~~Wi~~~~~DF~ 370 (966)
..-+.++...|.
T Consensus 67 d~lvkNcg~~f~ 78 (140)
T PF00790_consen 67 DALVKNCGPRFH 78 (140)
T ss_dssp HHHHHHSHHHHH
T ss_pred HHHHHcCCHHHH
Confidence 999999987774
No 155
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.96 E-value=48 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.415 Sum_probs=24.7
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
++-|..... +..++|.+..+.|+..|+.+|-+.
T Consensus 77 ~~ff~avke-gd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 77 RHFFNAVKE-GDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred hhhhheecc-CcEEEEeccchHHHHHHHHHHHHH
Confidence 444554444 557889999999999999998653
No 156
>KOG1922|consensus
Probab=32.47 E-value=88 Score=40.40 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.2
Q ss_pred cchhhH
Q psy4663 948 LPVEKI 953 (966)
Q Consensus 948 ~~~~~~ 953 (966)
+.+|.+
T Consensus 500 ~~~~~l 505 (833)
T KOG1922|consen 500 LGLDQL 505 (833)
T ss_pred cCHHHH
Confidence 333333
No 157
>KOG1739|consensus
Probab=31.12 E-value=84 Score=37.14 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=56.4
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
+.||+-|=++-|.|-|.. ....|-.+|.|.|.+--|.-.+..+ +.|-|...+ .-..+-|.+.
T Consensus 41 qdRyv~lk~g~Lsyykse--------------~E~~hGcRgsi~l~ka~i~ahEfDe---~rfdIsvn~-nv~~lra~~~ 102 (611)
T KOG1739|consen 41 QDRYVVLKNGALSYYKSE--------------DETEHGCRGSICLSKAVITAHEFDE---CRFDISVND-NVWYLRAQDP 102 (611)
T ss_pred cceEEEEcccchhhhhhh--------------hhhhcccceeeEeccCCcccccchh---heeeeEecc-ceeeehhcCc
Confidence 689999999999998763 2245777888888887776655332 358887773 3466778889
Q ss_pred hhhhhhHHHHHHHh
Q psy4663 211 EDKNNWMADLIMLN 224 (966)
Q Consensus 211 eeK~~W~~~L~~l~ 224 (966)
+.++.|+++|....
T Consensus 103 ~hr~~w~d~L~wmk 116 (611)
T KOG1739|consen 103 DHRQQWIDALEWMK 116 (611)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999986533
No 158
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=30.29 E-value=90 Score=34.28 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q psy4663 625 RRVAEITGE 633 (966)
Q Consensus 625 r~i~~ii~~ 633 (966)
|.|..+|..
T Consensus 15 RSIVR~IGt 23 (253)
T PF05308_consen 15 RSIVRRIGT 23 (253)
T ss_pred HHHHHHHhc
Confidence 444444444
No 159
>KOG0162|consensus
Probab=29.18 E-value=3.7e+02 Score=33.74 Aligned_cols=11 Identities=36% Similarity=0.476 Sum_probs=6.2
Q ss_pred cceEEEeccCc
Q psy4663 131 TERVCFLFDGL 141 (966)
Q Consensus 131 ~eR~~FLFd~~ 141 (966)
.||-|-.|=.+
T Consensus 204 neRnFHIfYQ~ 214 (1106)
T KOG0162|consen 204 NERNFHIFYQL 214 (1106)
T ss_pred Cccceeeehhh
Confidence 36766666443
No 160
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.43 E-value=8.5e+02 Score=31.60 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHHhCC
Q psy4663 314 TPLNFLQLLIERFSI 328 (966)
Q Consensus 314 tp~eLL~~Li~Ry~~ 328 (966)
..+.|+..|.+|..+
T Consensus 159 ~~~kLl~TIrSRc~~ 173 (824)
T PRK07764 159 EPDKVIGTIRSRTHH 173 (824)
T ss_pred ChhhhhHHHHhheeE
Confidence 345677777777543
No 161
>KOG1090|consensus
Probab=27.13 E-value=33 Score=43.55 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=56.6
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCc--eEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC--CCCCC
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGL--LLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP--DSDDY 189 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~--Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~--d~~~~ 189 (966)
+.||.|.|--+.-|-+ ..|+|.|-.+- |-|--- --.=.-||+|.|..++-.... .+-+-
T Consensus 1635 ~~eG~LyKrGA~lK~W-k~RwFVLd~~khqlrYYd~----------------~edt~pkG~IdLaevesv~~~~~k~vde 1697 (1732)
T KOG1090|consen 1635 IPEGYLYKRGAKLKLW-KPRWFVLDPDKHQLRYYDD----------------FEDTKPKGCIDLAEVESVALIGPKTVDE 1697 (1732)
T ss_pred Ccccchhhcchhhccc-ccceeEecCCccceeeecc----------------cccccccchhhhhhhhhhcccCccccCc
Confidence 4478887762222333 48998775431 111100 001124677877776655442 12233
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
+.-|.+... ++.|.|+|.+..+-++|+++|.+|.
T Consensus 1698 kgffdlktt-~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1698 KGFFDLKTT-NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred cceeeeehh-hHHHHHHhccchHHHHHHHHHHHhh
Confidence 556777766 6669999999999999999998765
No 162
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.54 E-value=3.3e+02 Score=26.59 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHccccCCChhHHHHHhhh---cccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHHH
Q psy4663 285 YKLVERLTYHIYADPAFVRTFLTT---YRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHW 361 (966)
Q Consensus 285 ~kLIe~Lt~~~~~D~~Fv~~FLlT---YRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~W 361 (966)
.++|+++|+....++++.-+.-++ -..-..+.+.+..|..|....++ .+|++-+.+|..-
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~-----------------~vql~AL~lLd~~ 64 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNP-----------------HVQLLALTLLELL 64 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHH
Confidence 578999998755555442221111 12245677888888888765432 2678889999999
Q ss_pred hhhcccccc
Q psy4663 362 VDHHFYDFE 370 (966)
Q Consensus 362 i~~~~~DF~ 370 (966)
+.++...|.
T Consensus 65 vkNcg~~f~ 73 (133)
T cd03561 65 VKNCGKPFH 73 (133)
T ss_pred HHhCChHHH
Confidence 999987675
No 163
>KOG2856|consensus
Probab=26.39 E-value=6.8e+02 Score=28.92 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=13.1
Q ss_pred CCCCCCCcccCCCcc
Q psy4663 690 IPRRWPNLSLKSPGI 704 (966)
Q Consensus 690 ~p~k~~~~~~~~~gv 704 (966)
....||.|++|++.+
T Consensus 286 mamnWPqF~E~s~d~ 300 (472)
T KOG2856|consen 286 MAMNWPQFEEWSPDL 300 (472)
T ss_pred cccCCchHhhcChhh
Confidence 458899999999987
No 164
>PRK09752 adhesin; Provisional
Probab=25.81 E-value=61 Score=42.45 Aligned_cols=6 Identities=50% Similarity=0.451 Sum_probs=2.8
Q ss_pred HHHHhh
Q psy4663 60 LSDSLQ 65 (966)
Q Consensus 60 i~~~~~ 65 (966)
+.+.|+
T Consensus 30 ~~~~~~ 35 (1250)
T PRK09752 30 VIDSCQ 35 (1250)
T ss_pred HHhhcc
Confidence 345553
No 165
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.64 E-value=3.6e+02 Score=26.83 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=46.2
Q ss_pred CHHHHHHHHccccCCChhHHH-----HHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHH
Q psy4663 283 TLYKLVERLTYHIYADPAFVR-----TFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNV 357 (966)
Q Consensus 283 TL~kLIe~Lt~~~~~D~~Fv~-----~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~v 357 (966)
|++++|++.|+....++++-- ..+-+ ....+.+.+..|..|.+.... ..++++-+.+
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n----------------~~v~l~aL~L 62 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKN----------------HKEVMLTLTV 62 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCC----------------HHHHHHHHHH
Confidence 578999999987655444411 11222 345677777777777642110 1256778899
Q ss_pred HHHHhhhccccccc
Q psy4663 358 LRHWVDHHFYDFEQ 371 (966)
Q Consensus 358 L~~Wi~~~~~DF~~ 371 (966)
|..=+++|...|..
T Consensus 63 Le~~vkNCG~~fh~ 76 (141)
T cd03565 63 LETCVKNCGHRFHV 76 (141)
T ss_pred HHHHHHHccHHHHH
Confidence 99999999888863
No 166
>KOG3541|consensus
Probab=25.31 E-value=39 Score=39.02 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=56.8
Q ss_pred hHHHHHHHHhccchhhhh---hhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHH
Q psy4663 483 NLLKIIKHTTNFTRWLEK---TIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCT 552 (966)
Q Consensus 483 ni~~~i~~fN~ls~wV~~---~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~T 552 (966)
++..+..+.......+.. .++..-.++.|.+-+..|-.|+..|.+..|+|+..+|...|....+.|++-+
T Consensus 385 ~Lkdl~~i~~~h~~~l~Nghinf~k~~~i~~qlr~v~~W~~v~c~fek~p~v~sylliaevlse~alm~~sfe 457 (477)
T KOG3541|consen 385 FLKDLLDISARHRLFLPNGHINFLKFVGIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEVLSEPALMRASFE 457 (477)
T ss_pred hHHHHHHHHhhhcccCCCchhHHHHHHhHHhhhhhhhhhhcccchHhhCchHHhHHhhhhhcccchhhhheec
Confidence 455555555555566665 5555667889999999999999999999999999999999999999887654
No 167
>KOG2148|consensus
Probab=25.18 E-value=30 Score=42.09 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 163 ~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
+++.|+=|.+..|+.+..+|..+.+.-...|.|.-. +-.....|.+.+||++.+.+|.++..+.+-.
T Consensus 62 kgg~ykrk~~~~Lrel~~Vdgin~~~e~~eF~L~fe-kl~k~w~a~nt~ern~fl~~i~kl~q~~l~~ 128 (867)
T KOG2148|consen 62 KGGVYKRKKMWNLRELSKVDGINPDKEGPEFDLGFE-KLYKQWTARNTDERNRFLVCILKLCQDYLRR 128 (867)
T ss_pred CCCccchhhhhchhhhhhhcccCCCCCCCceEeehH-hHHHHHHhCCHHHHhHHHHHHHHHHHHHhcc
Confidence 667899999999999999888876656667777544 2223478999999999999999988777654
No 168
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=25.10 E-value=4.9e+02 Score=31.79 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.2
Q ss_pred CCchhhhh
Q psy4663 208 NSPEDKNN 215 (966)
Q Consensus 208 ks~eeK~~ 215 (966)
.+.++-++
T Consensus 50 ~~~~~A~~ 57 (562)
T TIGR01628 50 QNPADAER 57 (562)
T ss_pred CCHHHHHH
Confidence 34444333
No 169
>PF15404 PH_4: Pleckstrin homology domain
Probab=25.08 E-value=52 Score=34.38 Aligned_cols=22 Identities=18% Similarity=0.620 Sum_probs=19.7
Q ss_pred CccEEEEeCCchhhhhhHHHHH
Q psy4663 200 GSPVILIANSPEDKNNWMADLI 221 (966)
Q Consensus 200 ~~~~~l~aks~eeK~~W~~~L~ 221 (966)
+++++|-|+|.+||..|+-+|.
T Consensus 161 gks~VF~ARSRqERD~WV~~I~ 182 (185)
T PF15404_consen 161 GKSMVFMARSRQERDLWVLAIN 182 (185)
T ss_pred CcEEEEEeccHHHHHHHHHHHH
Confidence 5569999999999999999884
No 170
>KOG3284|consensus
Probab=25.04 E-value=8.2e+02 Score=25.70 Aligned_cols=46 Identities=11% Similarity=0.361 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCCCCchHHHHHHHhhCCCC---CCChhhhhhHHHHh
Q psy4663 630 ITGEIQQFQNSPYCLSVEPRIRRFLENLTPFD---NWKEIDISNYLYEQ 675 (966)
Q Consensus 630 ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~---~~~e~~~~d~ly~l 675 (966)
.+..|.+.-..|-.|.....+.+||..+..+. .++|.+...-||++
T Consensus 154 L~~smnrls~~p~dfe~r~Kv~~Wl~rls~M~asDeL~e~q~RqllfDL 202 (213)
T KOG3284|consen 154 LSASMNRLSRLPPDFEGRTKVKQWLIRLSKMSASDELTEQQVRQLLFDL 202 (213)
T ss_pred HHHHHHhhccCCccchhHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 33334444445778888888999998776554 34555544445543
No 171
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=24.59 E-value=6.6e+02 Score=31.87 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=12.5
Q ss_pred cccccccCHHHHHHHHccc
Q psy4663 276 VPLIKGATLYKLVERLTYH 294 (966)
Q Consensus 276 v~~IkagTL~kLIe~Lt~~ 294 (966)
..+.--||++.++.-|++.
T Consensus 134 ~~V~aLgT~D~p~~a~~~s 152 (759)
T PF05518_consen 134 LRVTALGTLDSPVNALTSS 152 (759)
T ss_pred ceEEEeeccCCcccccccc
Confidence 3445567888888877753
No 172
>KOG0705|consensus
Probab=24.41 E-value=65 Score=38.81 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=33.7
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
.+.|+|.+..+-.-.|.|-+-||+..|+.+|..-+..+++.
T Consensus 445 de~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~ 485 (749)
T KOG0705|consen 445 DECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQS 485 (749)
T ss_pred cceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhh
Confidence 34799998877778899999999999999997766666554
No 173
>KOG1029|consensus
Probab=23.97 E-value=2.6e+02 Score=35.09 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=7.4
Q ss_pred CchhhHHHHHH
Q psy4663 924 NDKWAMHEAKE 934 (966)
Q Consensus 924 ~~~~~~~~~~~ 934 (966)
...|||..++.
T Consensus 184 ~~eWAVp~~~k 194 (1118)
T KOG1029|consen 184 LEEWAVPQHNK 194 (1118)
T ss_pred hhhccccchhh
Confidence 45788877654
No 174
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.24 E-value=1.6e+02 Score=25.05 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=40.9
Q ss_pred hHHHHHHHHhccchhhhhhhccc---CCHHHHHHHHHHHHHHHHHHh--hcCChhhHHHH
Q psy4663 483 NLLKIIKHTTNFTRWLEKTIVET---ENLEERIAIVSRAIEIMMVLN--DLNNFNGVLAI 537 (966)
Q Consensus 483 ni~~~i~~fN~ls~wV~~~IL~~---~~~~~Ra~~i~kfI~IA~~c~--~L~NFnsl~aI 537 (966)
.+...+..||.=-.|=++++|.. .....+..++.-+|++|-.+. ..||..+...+
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 46778899999999999999873 222238889999999987664 57888876543
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.01 E-value=3.1e+02 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=10.3
Q ss_pred ChHHHHHHHHHHhCC
Q psy4663 314 TPLNFLQLLIERFSI 328 (966)
Q Consensus 314 tp~eLL~~Li~Ry~~ 328 (966)
.+..|+..|..|...
T Consensus 160 ~~~~llpTIrSRc~~ 174 (620)
T PRK14948 160 DPQRVLPTIISRCQR 174 (620)
T ss_pred ChhhhhHHHHhheeE
Confidence 466777777777654
No 176
>KOG0584|consensus
Probab=22.00 E-value=28 Score=42.37 Aligned_cols=82 Identities=15% Similarity=0.322 Sum_probs=56.0
Q ss_pred cCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhccchhHHHHHHHHHccCCCCc-cchhHHHhhhhhhhhc
Q psy4663 528 LNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPCV-PFFGMYLTNILHIEEG 606 (966)
Q Consensus 528 L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~~~P~I-PflGv~L~DL~~i~eg 606 (966)
|.-|.+=.+.+.+|+|..|-|+-..|.....+......+|. ..+..+.||+..+..+.-.| =+---+|+-|.+++..
T Consensus 85 leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~--TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~ 162 (632)
T KOG0584|consen 85 LERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF--TSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ 162 (632)
T ss_pred HHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc--cCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC
Confidence 34455566788899999999999999888774444444443 57899999988776653322 2233457777777776
Q ss_pred CCCCC
Q psy4663 607 NPDYL 611 (966)
Q Consensus 607 npd~i 611 (966)
+|-.|
T Consensus 163 ~PPII 167 (632)
T KOG0584|consen 163 DPPII 167 (632)
T ss_pred CCCcc
Confidence 66543
No 177
>PF11537 DUF3227: Protein of unknown function (DUF3227); InterPro: IPR021609 This archaeal family of proteins has no known function. ; PDB: 2P9X_C.
Probab=21.51 E-value=1.1e+02 Score=28.45 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=32.2
Q ss_pred hhhHHHHHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHH
Q psy4663 2 QGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKAL 56 (966)
Q Consensus 2 ~~f~~~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l 56 (966)
+.|++||.=.+..| --|++-| +++.+|+..-..+.|-++++++++.++.+
T Consensus 47 ~~F~~avsklfGe~----sA~l~~~-~ii~~l~~~~~~~~ei~~le~~ve~~kk~ 96 (102)
T PF11537_consen 47 KKFYEAVSKLFGEY----SARLFEM-MIINELKLKVGKEEEIEDLEELVEELKKI 96 (102)
T ss_dssp HHHHHHHHHHH-HH----HHHHHHH-HHHHHHHHHC-TT---SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----HHHHHHH-HHHHHHHhcccccccHhhHHHHHHHHHHH
Confidence 46888888777776 5677776 56677776666667788888888777544
No 178
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=21.11 E-value=1.1e+03 Score=30.12 Aligned_cols=20 Identities=30% Similarity=0.668 Sum_probs=9.3
Q ss_pred HHHHHHHHHccCCCCccchhHH
Q psy4663 575 FRKYQERLRSINPPCVPFFGMY 596 (966)
Q Consensus 575 ~~~yR~~l~~~~~P~IPflGv~ 596 (966)
|..|+-.+++ .-.-+||-.|
T Consensus 462 ~s~y~~~~~s--aR~~~f~~~~ 481 (759)
T PF05518_consen 462 FSTYRVKMRS--ARTSPFVCHW 481 (759)
T ss_pred eEEEEEeccC--ccccHHHHHH
Confidence 5556544443 2334555444
No 179
>KOG2236|consensus
Probab=20.91 E-value=3e+02 Score=32.64 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=6.5
Q ss_pred ccchhHHHhhhhhh
Q psy4663 590 VPFFGMYLTNILHI 603 (966)
Q Consensus 590 IPflGv~L~DL~~i 603 (966)
|.++|+-+.+-+|+
T Consensus 272 ~~~~gi~ig~~vy~ 285 (483)
T KOG2236|consen 272 ISFLGICIGEKVYY 285 (483)
T ss_pred hhhhccccCCeeEe
Confidence 34455555444443
No 180
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=20.74 E-value=3.2e+02 Score=25.63 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=38.1
Q ss_pred hhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHHHHhhhcccccccCHHHHHHH--HHHHH
Q psy4663 307 TTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQL--KLFLE 384 (966)
Q Consensus 307 lTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L--~~Fl~ 384 (966)
.++-..+.+..||..|++-|+.+... .+.+|++++.. +-.+.+- ..++..+ ..|+.
T Consensus 20 i~~~dl~~~~~Ll~~LleWFnf~~~~-----------------~~~~VL~Ll~~-L~~~~~a----~~~l~~iG~~~fL~ 77 (98)
T PF14726_consen 20 ISEEDLVKERLLLKQLLEWFNFPPVP-----------------MKEEVLALLLR-LLKSPYA----AQILRDIGAVRFLS 77 (98)
T ss_pred ccHHHHccHHHHHHHHHHHhCCCCCc-----------------cHHHHHHHHHH-HHhCcHH----HHHHHHccHHHHHH
Confidence 34445568899999999999887542 34588999988 4444321 2344444 56666
Q ss_pred Hhh
Q psy4663 385 TIN 387 (966)
Q Consensus 385 ~~~ 387 (966)
.+.
T Consensus 78 klr 80 (98)
T PF14726_consen 78 KLR 80 (98)
T ss_pred HHH
Confidence 554
No 181
>KOG1117|consensus
Probab=20.66 E-value=2.4e+02 Score=35.93 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=54.5
Q ss_pred EeeeccEEEeecCCC----CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC---
Q psy4663 113 FFREDTLLKLNIGKK----TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD--- 185 (966)
Q Consensus 113 li~eG~l~ki~~~~~----~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d--- 185 (966)
=+++|.|..-..+++ .+.++|||.|=+..|+.-|-... .+.....+|+++.+--...
T Consensus 1030 s~k~G~lKirEe~srll~g~~fqdryfilng~~l~lyke~Ks----------------sKhek~wpl~s~k~Y~Gvkkkl 1093 (1186)
T KOG1117|consen 1030 SIKEGILKIREEPSRLLSGNKFQDRYFILNGGCLFLYKEVKS----------------SKHEKEWPLSSMKVYLGVKKKL 1093 (1186)
T ss_pred CcccceEEeccCccccccCCccceEEEEecCcEEEEeehhhc----------------cccccccccccceEEecccccc
Confidence 355666642222222 25689999999999988876321 0112234455554432211
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
......+|.++.. +-...++|.+..+...||.-+-.
T Consensus 1094 KpPt~wg~T~i~e-khh~~l~cd~s~~~~ewfts~fk 1129 (1186)
T KOG1117|consen 1094 KPPTSWGFTAISE-KHHWYLCCDSSSEQTEWFTSIFK 1129 (1186)
T ss_pred CCCCccceeeeee-cceEEEecCCccccchhhhhhhh
Confidence 1123456777644 33588999999999999986533
No 182
>KOG2391|consensus
Probab=20.63 E-value=2.5e+02 Score=31.95 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCchhhHHH
Q psy4663 866 PPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFG-------KQVPMFQFNAPGNDKWAMHE 931 (966)
Q Consensus 866 ~~~~~ppppp~p~~~~~~~~~~p~p~pppp~~~~~~~~pp~~~p~~-------~~~~~~~~~~~~~~~~~~~~ 931 (966)
||-..++=|++|.+-.......||+ +|......|+.||||++++ --+.....++-++++--|+.
T Consensus 139 pP~ys~~~~~~p~p~p~~~~~~~p~--~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~ira 209 (365)
T KOG2391|consen 139 PPVYSRSLPSPPPPYPQTEYNTPPL--KPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRA 209 (365)
T ss_pred CccccCCCCCCCCCCCcccCCCCCC--CCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccchhH
Done!