Query psy4663
Match_columns 966
No_of_seqs 507 out of 1856
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:36:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksy_A SOS-1, SON of sevenless 100.0 6E-124 2E-128 1186.2 52.0 699 1-712 328-1048(1049)
2 2ii0_A SOS-1, SON of sevenless 100.0 6.1E-93 2.1E-97 836.0 38.1 470 241-711 3-488 (490)
3 4f7z_A RAP guanine nucleotide 100.0 3.6E-68 1.2E-72 678.2 33.3 392 277-683 486-998 (999)
4 3cf6_E RAP guanine nucleotide 100.0 1.2E-57 4.1E-62 556.4 31.9 391 278-683 182-693 (694)
5 2ije_S Guanine nucleotide-rele 100.0 4.4E-57 1.5E-61 484.2 21.3 235 441-684 3-239 (240)
6 3qxl_A RAS-specific guanine nu 100.0 3.3E-55 1.1E-59 476.5 19.9 243 435-682 24-271 (271)
7 1dbh_A Protein (human SOS 1); 100.0 9.7E-35 3.3E-39 328.9 17.3 216 3-230 133-354 (354)
8 2pz1_A RHO guanine nucleotide 100.0 5E-31 1.7E-35 309.2 20.3 206 10-246 248-461 (466)
9 2dfk_A Collybistin II; DH doma 100.0 8.6E-31 2.9E-35 301.5 19.5 203 10-243 171-381 (402)
10 2vrw_B P95VAV, VAV1, proto-onc 99.9 1.5E-27 5E-32 275.0 18.4 184 9-228 150-338 (406)
11 1xcg_A PDZ-rhogef, RHO guanine 99.9 2.7E-27 9.3E-32 269.1 17.0 195 9-226 155-367 (368)
12 3mpx_A FYVE, rhogef and PH dom 99.9 5.9E-27 2E-31 272.1 17.5 181 8-227 158-339 (434)
13 3t06_A PDZ-rhogef, RHO guanine 99.9 2.1E-26 7.1E-31 266.3 18.3 195 9-226 197-409 (418)
14 3ky9_A Proto-oncogene VAV; cal 99.9 3.1E-26 1.1E-30 275.8 18.4 184 9-228 322-510 (587)
15 3p6a_A RHO guanine nucleotide 99.9 5.1E-26 1.7E-30 259.4 18.0 194 9-226 162-372 (377)
16 2z0q_A XPLN, RHO guanine nucle 99.9 1.7E-26 6E-31 260.3 13.9 182 7-224 144-345 (346)
17 1kz7_A Guanine nucleotide exch 99.9 1.1E-25 3.6E-30 254.8 19.2 181 9-229 137-329 (353)
18 1txd_A RHO guanine nucleotide 99.9 9.6E-26 3.3E-30 258.0 16.8 200 9-230 160-374 (385)
19 3odw_A RHO guanine nucleotide 99.9 1.2E-25 4E-30 267.4 17.9 193 9-226 315-525 (536)
20 1foe_A T-lymphoma invasion and 99.9 1.3E-24 4.5E-29 247.9 21.3 203 9-230 150-371 (377)
21 2rgn_B RHOA/RAC/CDC42 exchange 99.9 2.1E-24 7.2E-29 244.2 17.2 179 9-227 133-320 (354)
22 1nty_A Triple functional domai 99.9 5.7E-24 2E-28 236.4 16.3 172 10-226 133-309 (311)
23 3jzy_A Intersectin 2; C2 domai 99.9 7.5E-25 2.6E-29 259.3 0.0 194 9-227 158-364 (510)
24 1v61_A RAC/CDC42 guanine nucle 99.8 1.6E-21 5.5E-26 187.8 10.3 119 92-225 8-126 (132)
25 2lg1_A A-kinase anchor protein 99.7 5.9E-18 2E-22 173.6 4.0 153 36-227 2-174 (185)
26 1zc3_B Exocyst complex protein 99.7 2E-16 6.7E-21 149.2 12.2 105 109-226 4-108 (113)
27 3t6a_A Breast cancer anti-estr 99.7 1.9E-16 6.6E-21 170.5 12.0 243 439-686 44-322 (333)
28 3t6g_A SH2 domain-containing p 99.6 8.6E-16 3E-20 165.3 10.8 240 439-683 45-318 (331)
29 3qwm_A Iqsec1, IQ motif and SE 99.5 4.8E-14 1.6E-18 135.8 11.3 109 105-224 5-121 (140)
30 1fho_A UNC-89; pleckstrin homo 99.5 1.7E-14 5.8E-19 136.7 4.3 103 110-227 7-114 (119)
31 3jv3_A Intersectin-1; SH3 doma 99.0 1.1E-10 3.7E-15 127.3 5.9 69 10-96 214-283 (283)
32 1by1_A Protein (PIX); RHO-GTPa 98.8 3.5E-09 1.2E-13 110.4 5.9 57 9-65 138-195 (209)
33 2i5f_A Pleckstrin; PH domain, 98.5 3.2E-07 1.1E-11 84.6 10.4 97 110-223 4-107 (109)
34 1pls_A Pleckstrin homology dom 98.5 4.5E-07 1.5E-11 84.4 10.1 97 112-225 4-101 (113)
35 1u5d_A SKAP55, SRC kinase-asso 98.5 6.6E-07 2.3E-11 82.0 10.6 98 112-225 2-105 (108)
36 2d9y_A Pleckstrin homology dom 98.4 9.8E-07 3.4E-11 82.4 11.2 98 110-223 8-107 (117)
37 2dn6_A KIAA0640 protein; PH do 98.4 9.4E-07 3.2E-11 82.2 10.9 97 111-225 6-103 (115)
38 1x05_A Pleckstrin; PH domain, 98.4 8.4E-07 2.9E-11 84.6 10.7 98 110-224 15-119 (129)
39 1v89_A Hypothetical protein KI 98.4 9.2E-07 3.2E-11 82.5 10.7 98 111-225 6-112 (118)
40 1x1g_A Pleckstrin 2; PH domain 98.4 3.8E-07 1.3E-11 86.9 7.8 101 110-226 15-125 (129)
41 2dkp_A Pleckstrin homology dom 98.4 1.9E-06 6.5E-11 81.8 12.0 98 110-223 18-117 (128)
42 2lul_A Tyrosine-protein kinase 98.4 1.2E-06 4.1E-11 87.8 10.6 99 111-225 13-121 (164)
43 3rcp_A Pleckstrin homology dom 98.4 6.4E-07 2.2E-11 81.9 7.7 90 115-222 1-90 (103)
44 1upq_A PEPP1; PH domain, phosp 98.4 2.4E-06 8.1E-11 80.5 11.6 100 110-225 8-109 (123)
45 2yry_A Pleckstrin homology dom 98.3 2.1E-06 7E-11 80.9 11.0 98 110-223 19-118 (122)
46 1fao_A Dual adaptor of phospho 98.3 1.2E-06 4.1E-11 83.1 9.3 99 110-226 15-113 (126)
47 1btk_A Bruton'S tyrosine kinas 98.3 2E-06 7E-11 86.6 11.1 101 112-225 2-132 (169)
48 1wgq_A FYVE, rhogef and PH dom 98.3 1.9E-06 6.6E-11 79.6 9.6 96 112-224 7-102 (109)
49 2rsg_A Collagen type IV alpha- 98.3 2E-06 6.8E-11 77.3 8.7 91 114-223 2-92 (94)
50 1fgy_A GRP1; PH domain, signal 98.3 2.8E-06 9.6E-11 80.3 10.2 98 111-226 3-121 (127)
51 1u5f_A SRC-associated adaptor 98.3 3E-06 1E-10 83.0 10.7 99 111-225 15-119 (148)
52 2cod_A Centaurin-delta 1; ARF 98.3 2.7E-06 9.2E-11 79.4 9.6 95 110-225 5-99 (115)
53 2d9x_A Oxysterol binding prote 98.3 1.8E-06 6E-11 81.5 8.3 98 112-227 7-106 (120)
54 1wg7_A Dedicator of cytokinesi 98.2 3.9E-06 1.3E-10 82.3 9.4 102 110-227 15-126 (150)
55 1dyn_A Dynamin; signal transdu 98.2 9.5E-06 3.3E-10 76.4 11.4 94 113-222 12-114 (125)
56 1v5u_A SBF1, SET binding facto 98.2 3.4E-06 1.1E-10 78.7 8.3 95 112-224 7-110 (117)
57 1eaz_A Tandem PH domain contai 98.2 2.5E-06 8.6E-11 80.5 7.1 98 110-225 11-111 (125)
58 2d9v_A Pleckstrin homology dom 98.1 7.5E-06 2.6E-10 78.5 10.1 99 111-226 6-115 (130)
59 4a6h_A Phosphatidylinositol 4, 98.1 8.5E-06 2.9E-10 77.3 9.9 98 113-224 6-117 (120)
60 1x1f_A Signal-transducing adap 98.1 9E-06 3.1E-10 80.1 10.5 97 111-225 16-113 (149)
61 2cof_A Protein KIAA1914; PH do 98.1 7.8E-06 2.7E-10 75.4 8.8 95 111-224 6-100 (107)
62 2p0d_A RHO GTPase-activating p 98.1 1.8E-05 6E-10 75.9 11.3 111 111-226 10-125 (129)
63 2w2x_D 1-phosphatidylinositol- 98.1 8.1E-06 2.8E-10 77.7 8.3 106 112-225 11-119 (124)
64 1u5e_A SRC-associated adaptor 98.1 3.8E-05 1.3E-09 80.1 14.1 99 111-225 104-208 (211)
65 1v88_A Oxysterol binding prote 98.0 1.4E-05 4.9E-10 76.8 9.8 96 111-225 6-124 (130)
66 1wi1_A Calcium-dependent activ 98.0 1.5E-05 5.2E-10 75.7 9.3 93 113-222 8-107 (126)
67 1unq_A RAC-alpha serine/threon 98.0 3.3E-06 1.1E-10 80.0 4.7 99 111-226 6-111 (125)
68 3aj4_A Pleckstrin homology dom 98.0 1.6E-05 5.6E-10 73.6 9.4 97 112-225 4-111 (112)
69 2rlo_A Centaurin-gamma 1; spli 98.0 1.8E-05 6.1E-10 75.5 9.6 110 112-228 3-127 (128)
70 2da0_A 130-kDa phosphatidylino 98.0 2.6E-05 8.9E-10 72.7 9.9 96 111-227 8-103 (114)
71 2dhk_A TBC1 domain family memb 98.0 2.6E-05 9E-10 73.4 9.9 94 112-224 7-103 (119)
72 2dtc_A RAL guanine nucleotide 97.9 5.6E-05 1.9E-09 72.1 11.5 83 131-223 25-110 (126)
73 2r09_A Cytohesin-3; autoinhibi 97.9 0.00018 6.3E-09 80.6 17.5 105 111-233 211-336 (347)
74 2q13_A DCC-interacting protein 97.9 4.9E-05 1.7E-09 86.4 12.9 99 111-227 276-377 (385)
75 3cxb_B Pleckstrin homology dom 97.9 4.2E-05 1.4E-09 71.4 10.1 96 115-226 2-102 (112)
76 2fjl_A 1-phosphatidylinositol- 97.9 5.3E-05 1.8E-09 73.9 10.5 111 114-225 2-148 (150)
77 1btn_A Beta-spectrin; signal t 97.8 3.8E-05 1.3E-09 70.1 8.3 82 131-222 24-105 (106)
78 1wjm_A Beta-spectrin III; PH d 97.8 3.4E-05 1.2E-09 72.8 7.9 104 112-225 7-117 (123)
79 1v5p_A Pleckstrin homology dom 97.8 8.2E-05 2.8E-09 71.1 10.3 105 106-223 8-118 (126)
80 3a8p_A T-lymphoma invasion and 97.8 6.7E-05 2.3E-09 80.8 10.6 106 111-226 9-125 (263)
81 4h8s_A DCC-interacting protein 97.8 0.00012 4.2E-09 83.8 12.9 99 110-226 298-399 (407)
82 2j59_M RHO-GTPase activating p 97.7 9.6E-05 3.3E-09 73.8 9.3 98 112-225 2-111 (168)
83 3tfm_A Myosin X; split PH doma 97.7 7.8E-05 2.7E-09 78.6 8.8 97 111-226 56-156 (228)
84 2coc_A FYVE, rhogef and PH dom 97.7 0.00012 4.2E-09 68.4 8.9 91 116-224 11-105 (112)
85 3lju_X ARF-GAP with dual PH do 97.6 0.00019 6.5E-09 81.6 10.9 101 111-228 267-375 (386)
86 2y7b_A Actin-binding protein a 97.5 0.00014 4.6E-09 69.5 7.5 102 112-226 4-129 (134)
87 3pp2_A RHO GTPase-activating p 97.4 0.0006 2E-08 64.7 10.0 108 111-224 6-122 (124)
88 1qqg_A IRS-1, insulin receptor 97.4 0.00026 8.8E-09 76.3 7.8 100 110-227 7-114 (264)
89 1dro_A Beta-spectrin; cytoskel 97.3 0.00038 1.3E-08 65.6 7.2 87 131-225 33-119 (122)
90 3tca_A Amyloid beta A4 precurs 97.0 0.0024 8.2E-08 69.1 10.7 99 115-227 170-278 (291)
91 3h0g_A DNA-directed RNA polyme 96.7 0.00028 9.7E-09 92.5 0.0 17 20-36 272-288 (1752)
92 2ys3_A UNC-112-related protein 96.6 0.0026 9.1E-08 60.9 6.2 56 171-226 55-113 (137)
93 3h0g_A DNA-directed RNA polyme 96.2 0.00075 2.6E-08 88.6 0.0 6 286-291 634-639 (1752)
94 3lju_X ARF-GAP with dual PH do 96.2 0.0052 1.8E-07 69.8 6.8 99 111-226 144-247 (386)
95 3hk0_A Growth factor receptor- 96.1 0.031 1E-06 59.6 11.8 101 114-228 133-243 (256)
96 2rov_A RHO-associated protein 96.0 0.012 4.2E-07 55.2 7.1 97 115-224 3-114 (117)
97 4gmv_A RAS-associated and plec 96.0 0.024 8.1E-07 61.2 10.1 101 115-229 160-270 (281)
98 4f7h_A Fermitin family homolog 95.9 0.018 6.2E-07 56.6 8.0 119 90-226 23-151 (173)
99 1w1g_A HPDK1, 3-phosphoinositi 95.8 0.099 3.4E-06 50.9 12.9 108 90-226 32-140 (151)
100 3ksy_A SOS-1, SON of sevenless 95.7 0.004 1.4E-07 79.5 3.1 43 921-965 79-121 (1049)
101 3a8n_A TIAM-1, T-lymphoma inva 95.5 0.011 3.7E-07 63.9 5.1 85 131-225 40-124 (279)
102 4ejn_A RAC-alpha serine/threon 95.1 0.022 7.4E-07 65.4 6.6 98 111-225 4-108 (446)
103 2d9w_A Docking protein 2; PH d 94.7 0.21 7.1E-06 47.0 10.7 103 111-223 10-119 (127)
104 1mai_A Phospholipase C delta-1 94.6 0.058 2E-06 51.5 6.9 100 112-226 11-122 (131)
105 4bbk_A Kindlin-1, fermitin fam 94.1 0.11 3.6E-06 50.7 7.3 82 131-225 45-129 (165)
106 1v5m_A SH2 and PH domain-conta 89.2 0.74 2.5E-05 43.5 6.9 39 188-226 93-131 (136)
107 3zvr_A Dynamin-1; hydrolase, D 78.8 54 0.0019 40.1 18.6 94 113-222 540-642 (772)
108 3a58_A Exocyst complex compone 72.0 11 0.00038 40.3 8.7 62 163-228 160-221 (320)
109 3hie_A Protein PSL1, exocyst c 71.8 9.6 0.00033 37.7 7.7 60 163-226 90-149 (171)
110 3iot_A Maltose-binding protein 65.9 1.3 4.3E-05 50.6 0.0 12 353-364 190-201 (449)
111 3tfm_A Myosin X; split PH doma 65.7 7.5 0.00026 40.2 6.0 50 171-221 176-225 (228)
112 2adz_A Alpha-1-syntrophin; pro 61.2 14 0.00048 36.8 6.5 52 171-222 121-174 (178)
113 2jss_A Chimera of histone H2B. 59.4 4.3 0.00015 41.1 2.6 39 921-960 71-118 (192)
114 1z87_A Alpha-1-syntrophin; pro 57.9 17 0.00058 38.6 7.0 53 171-223 206-260 (263)
115 3a98_B Engulfment and cell mot 57.9 12 0.0004 38.3 5.5 38 191-228 116-153 (203)
116 2coa_A Protein kinase C, D2 ty 56.8 51 0.0017 30.9 9.1 96 110-224 5-118 (125)
117 1twf_A B220, DNA-directed RNA 53.4 2.8 9.5E-05 55.6 0.0 15 21-35 267-281 (1733)
118 1twf_A B220, DNA-directed RNA 45.4 4.4 0.00015 53.7 0.0 6 528-533 1081-1086(1733)
119 3g2s_A C-terminal fragment of 42.9 65 0.0022 31.0 7.9 74 280-370 8-84 (149)
120 2d9z_A Protein kinase C, NU ty 41.6 1.2E+02 0.0041 28.4 9.1 96 110-224 5-122 (129)
121 1x5b_A Signal transducing adap 39.4 68 0.0023 31.3 7.5 75 279-370 11-88 (163)
122 3zyq_A Hepatocyte growth facto 37.9 57 0.002 33.6 7.1 86 281-383 6-97 (226)
123 3ml4_A Protein DOK-7; tyrosine 35.7 53 0.0018 33.8 6.1 95 113-222 9-110 (224)
124 1mhq_A ADP-ribosylation factor 32.7 74 0.0025 30.5 6.4 71 283-370 1-74 (148)
125 2zkm_X 1-phosphatidylinositol- 32.5 1.2E+02 0.0041 37.2 9.9 39 190-228 96-138 (799)
126 1juq_A ADP-ribosylation factor 28.0 1.2E+02 0.004 29.9 7.1 73 281-370 11-86 (171)
127 1dvp_A HRS, hepatocyte growth 28.0 99 0.0034 31.5 6.9 86 282-384 4-95 (220)
128 4gou_A EHRGS-rhogef; RGS domai 27.4 4.7E+02 0.016 27.2 11.5 48 14-61 323-371 (518)
129 3ldz_A STAM-1, signal transduc 26.3 1.9E+02 0.0064 27.3 8.0 48 282-329 4-54 (140)
130 1v54_E Cytochrome C oxidase po 22.3 63 0.0022 29.3 3.4 46 521-567 51-96 (109)
131 3rru_A TOM1L1 protein; structu 22.0 2.5E+02 0.0084 27.0 8.0 49 280-328 13-64 (152)
132 3v5w_A G-protein coupled recep 21.9 4.4E+02 0.015 31.7 11.8 97 110-225 556-652 (689)
No 1
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=6e-124 Score=1186.16 Aligned_cols=699 Identities=54% Similarity=0.951 Sum_probs=625.5
Q ss_pred ChhhHHHHHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCcc----
Q psy4663 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQ-NYPRNGRDTG---- 75 (966)
Q Consensus 1 ~~~f~~~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~-~~~k~~~~~~---- 75 (966)
+++++++.++.|.+||++|||||+||+|||++|+|+|++.+|+++|++|+++|+.++.+||+.|. .+.+ ++.+
T Consensus 328 ~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~k--~r~~e~~~ 405 (1049)
T 3ksy_A 328 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAK--RRLSESAC 405 (1049)
T ss_dssp CTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTHHHHHHHHHHTTSTTHH--HHHHHHC-
T ss_pred HhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccchhhh
Confidence 35677888999999999999999999999999999999889999999999999999999999884 3333 2111
Q ss_pred -hhhhhhhhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccc
Q psy4663 76 -IRAYNRLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSV 154 (966)
Q Consensus 76 -~~~~~~~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~ 154 (966)
...+..+|+.|++++|.++|+.|+||+|.++.+++|+||+||.|.++ +.+ ++||+|||+|+|||||++..+..+
T Consensus 406 ~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~eG~l~~~--~~k---~~r~~FLF~D~Ll~~K~~~~~~~~ 480 (1049)
T 3ksy_A 406 RFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRV--GAK---HERHIFLFDGLMICCKSNHGQPRL 480 (1049)
T ss_dssp ------------CCSHHHHHHHTSSSCCSSCGGGTCSCCCCEEEEEET--TCS---SCEEEEEETTEEEEEECCTTCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccceEEEeceEEEE--ccC---ceEEEEeeCCeEEEEEecCccCCC
Confidence 12245678889999999999999999999999999999999999987 333 599999999999999987543333
Q ss_pred ccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhHhhhh
Q psy4663 155 SVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLD 234 (966)
Q Consensus 155 ~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~r~ld 234 (966)
+ |..+..|.||+.|+|.++.|.+..|++.++|+|+|.+.++..|+|+|+|.++|+.||++|.+++++++++++++
T Consensus 481 ~-----g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~~~~r~~~ 555 (1049)
T 3ksy_A 481 P-----GASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLD 555 (1049)
T ss_dssp T-----TSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCCCCceEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 44567899999999999999999999999999999988777899999999999999999999999999999999
Q ss_pred hhhcccccCCCccCCCCCccccCCCCCCCccccccc-CCCCCcccccccCHHHHHHHHccccCCChhHHHHHhhhccccc
Q psy4663 235 SILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHIYADPAFVRTFLTTYRSFC 313 (966)
Q Consensus 235 sil~~ee~~~~~~~~~~~~~~f~~~d~~~~iv~e~~-~~~~~v~~IkagTL~kLIe~Lt~~~~~D~~Fv~~FLlTYRsFt 313 (966)
+.+.++++.++++++++..|.|+++|++++|+|++. .+.+|++.|+||||++||++||.+.+.|+.|+.+||+|||+||
T Consensus 556 s~~~~~ek~~~l~~p~~~~~~f~~~d~~~~i~~~~~~~~~~~~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~ 635 (1049)
T 3ksy_A 556 VTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFC 635 (1049)
T ss_dssp HHHHHHHHHSCCCCCCTTTCGGGSCCCTTTEEECSSSCSSCCSCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHSCTTTS
T ss_pred hhhhccccccccCCCCccccccccCCCCcceEEeccCCCCCCcceeeccCHHHHHHHHccccCCCHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999975 4567899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCCC-------------cHHHHHHhhhhcccchhhHHHHHHHHHhhhcccccccCHHHHHHHH
Q psy4663 314 TPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLK 380 (966)
Q Consensus 314 tp~eLL~~Li~Ry~~~~~~~~-------------~~~~~k~~~~~~~~~iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~ 380 (966)
||.+||++|++||+.+.+... ..+++++|++.+..+||.||++||+.||++||+||..|+.++..|.
T Consensus 636 tp~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ir~rV~~vLk~Wle~~~~DF~~d~~Ll~~L~ 715 (1049)
T 3ksy_A 636 KPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRME 715 (1049)
T ss_dssp CHHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHHHHHHhhccchhhhHHHHHHHHHHhCcccccCCHHHHHHHH
Confidence 999999999999998876421 2367888988888999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhhhhhhhhhhhcccCchhhhhhhccccCCCCCCccccccCCc--ccccccccCHHHHHHhhhHHHHHH
Q psy4663 381 LFLETINGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSE--EEWNILVLHPVEIARQLTLLESEY 458 (966)
Q Consensus 381 ~Fl~~~~~~~~~k~~~~l~k~l~r~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~--~~~~ll~~~p~eiA~QLTlid~~l 458 (966)
+|++.+.++.+.++++++.++++++.............+..++|++.|++..++ +.++|+++++.|||+|||++|+++
T Consensus 716 ~Fl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~QLTlid~~l 795 (1049)
T 3ksy_A 716 EFIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDL 795 (1049)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHHHHHHHHCC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhccccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHHHHHHHHHH
Confidence 999998888888999999888877654332223334566677777777765444 678999999999999999999999
Q ss_pred hccCCccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy4663 459 YRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIV 538 (966)
Q Consensus 459 F~~I~p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~ 538 (966)
|++|.+.||++++|++.++...+||+.+++++||.+++||+++||.+.+.++||++|++||+||.+|++||||||+|||+
T Consensus 796 f~~I~p~E~l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIi 875 (1049)
T 3ksy_A 796 YRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVV 875 (1049)
T ss_dssp HHHCCGGGGSSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccchHHHHhhcCHHHHHHHHHHHhccchhHHHHHHHHHccCCCCccchhHHHhhhhhhhhcCCCCCCCCCCcc
Q psy4663 539 SALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEEL 618 (966)
Q Consensus 539 saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~l 618 (966)
+||++++|+||++||+.|+.+.++.|++|++++.+||++||++++++++|||||||+||+||+|+++||+|++.+.++|+
T Consensus 876 sgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~l 955 (1049)
T 3ksy_A 876 SAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKEL 955 (1049)
T ss_dssp HHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTTTHHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEE
T ss_pred HHcccchhHhHHHHHHHCCHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCccccCCCCCe
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999997655689
Q ss_pred ccHHHhhhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCCcCCCCCCCCCCCCcc
Q psy4663 619 INFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLS 698 (966)
Q Consensus 619 INf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~~~~~p~~p~k~~~~~ 698 (966)
|||+|+|+++++|.+|++||+.+|+|.++++|++||+++..+.+++|++++|++|++||++|||+++++|++|||| +++
T Consensus 956 INf~K~~~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~~~~~~~~~~~~-~~~ 1034 (1049)
T 3ksy_A 956 INFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY-SYP 1034 (1049)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSSCCCCCCCHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCSSSCCCCCCCCC-CSC
T ss_pred EcHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCCCCCCCCCCccc-ccc
Confidence 9999999999999999999999999999999999999987777788888889999999999999999999999998 999
Q ss_pred cCCCccccccCccc
Q psy4663 699 LKSPGIKASKNYMA 712 (966)
Q Consensus 699 ~~~~gv~p~~~~~~ 712 (966)
+|+|||+|..++.+
T Consensus 1035 ~~~~~~~~~~~~~~ 1048 (1049)
T 3ksy_A 1035 LKSPGVRPSNPRPG 1048 (1049)
T ss_dssp CCCCCSCCCCC---
T ss_pred CCCCCCCCcccCCC
Confidence 99999999877643
No 2
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=6.1e-93 Score=836.01 Aligned_cols=470 Identities=58% Similarity=1.008 Sum_probs=415.6
Q ss_pred ccCCCccCCCCCccccCCCCCCCcccccccC-CCCCcccccccCHHHHHHHHccccCCChhHHHHHhhhcccccChHHHH
Q psy4663 241 EKKHPLRQPSPELYKFSEPDCPANIILEEKD-NHTGVPLIKGATLYKLVERLTYHIYADPAFVRTFLTTYRSFCTPLNFL 319 (966)
Q Consensus 241 e~~~~~~~~~~~~~~f~~~d~~~~iv~e~~~-~~~~v~~IkagTL~kLIe~Lt~~~~~D~~Fv~~FLlTYRsFttp~eLL 319 (966)
++++++++|++++|+|+++|++++|||+++. ...|++.|+||||++||++||.+.+.|..|+++||+|||+||||.+||
T Consensus 3 ~~~~~~~~p~~~~~~f~~~D~~~~ii~~~~~~~~~g~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~tp~eLL 82 (490)
T 2ii0_A 3 MAEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELL 82 (490)
T ss_dssp ----CCCCCCTTTCGGGSCCCTTTEEEC-------CCCCEEEECHHHHHHHHTCSSSCCHHHHHHHHHHGGGTSCHHHHH
T ss_pred ccccCCCCCCccccCCCCCCCCCCeEEecCCCCcCCCceeeecCHHHHHHHHccCCCCCHHHHHHHHHHHHhhCCHHHHH
Confidence 5788999999999999999999999998863 235899999999999999999988899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCc-------------HHHHHHhhhhcccchhhHHHHHHHHHhhhcccccccCHHHHHHHHHHHHHh
Q psy4663 320 QLLIERFSIPEFQGTV-------------REDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETI 386 (966)
Q Consensus 320 ~~Li~Ry~~~~~~~~~-------------~~~~k~~~~~~~~~iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~ 386 (966)
++|++||+.+.+.... ..++++|++++..+||.||++||+.||++||+||+.|+.+++.|.+|++.+
T Consensus 83 ~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~ 162 (490)
T 2ii0_A 83 SLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTV 162 (490)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhhhhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhc
Confidence 9999999987654321 235778888888899999999999999999999998999999999999998
Q ss_pred hccchhhhhhhhhhhhhcccCchhhhhhhccccCCCCCCccccccCCc--ccccccccCHHHHHHhhhHHHHHHhccCCc
Q psy4663 387 NGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSE--EEWNILVLHPVEIARQLTLLESEYYRAVKP 464 (966)
Q Consensus 387 ~~~~~~k~~~~l~k~l~r~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~--~~~~ll~~~p~eiA~QLTlid~~lF~~I~p 464 (966)
.++.++++++++.++++++.....++.....++..++|.+.|++..++ +.++++++++.|||+|||++|+++|++|.+
T Consensus 163 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~~ 242 (490)
T 2ii0_A 163 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQP 242 (490)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCCG
T ss_pred cchhHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCCH
Confidence 888888999988888877643333333344556667777877765443 568999999999999999999999999999
Q ss_pred cccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccc
Q psy4663 465 SEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSA 544 (966)
Q Consensus 465 ~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss 544 (966)
.||++++|++.++...+||+.+++++||++++||+.+||.+.+.++||++|++||+||++|++||||||+|||++||+++
T Consensus 243 ~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~ 322 (490)
T 2ii0_A 243 SELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSS 322 (490)
T ss_dssp GGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSH
T ss_pred HHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Confidence 99999999998776778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhcCHHHHHHHHHHHhccchhHHHHHHHHHccCCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHh
Q psy4663 545 SVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKR 624 (966)
Q Consensus 545 ~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~ 624 (966)
+|+||++||+.|+.+.++.|++|.+++++||++||++++++++|||||||+||+||+|+++||+|++++.++++|||+|+
T Consensus 323 ~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K~ 402 (490)
T 2ii0_A 323 PVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKR 402 (490)
T ss_dssp HHHTCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHH
T ss_pred hhhhHHHHHHHCCHHHHHHHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999998643459999999
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCCcCCCCCCCCCCCCcccCCCcc
Q psy4663 625 RRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGI 704 (966)
Q Consensus 625 r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~~~~~p~~p~k~~~~~~~~~gv 704 (966)
|+++++|.+|++||+.+|+|..+++|++||+++..+.+++|++++|+||++||++|||++.++++++|+ +++.+|+|||
T Consensus 403 r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl~~EPr~~~~~~~~~~~-~~~~~~~~g~ 481 (490)
T 2ii0_A 403 RKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKK-YSYPLKSPGV 481 (490)
T ss_dssp HHHHHHHHHHGGGSSCCCSCCCCHHHHHHHHTCCTTTTSCHHHHHHHHHHHHHHHSCCTTSCCCCCCCC-CCSCCCCCCS
T ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHHHHHHhccccccCchhhhHHHHHHHHHhhCCCCCCCCCCCCCC-CCCcCCCCCC
Confidence 999999999999999999999999999999998887778888888999999999999999999999998 6888999999
Q ss_pred ccccCcc
Q psy4663 705 KASKNYM 711 (966)
Q Consensus 705 ~p~~~~~ 711 (966)
+|+..+.
T Consensus 482 ~~~~~~~ 488 (490)
T 2ii0_A 482 RPSNPRP 488 (490)
T ss_dssp SCCCC--
T ss_pred CCCCCCC
Confidence 9976443
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=3.6e-68 Score=678.16 Aligned_cols=392 Identities=19% Similarity=0.368 Sum_probs=317.7
Q ss_pred ccccccCHHHHHHHHccccCCCh-------hHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccc
Q psy4663 277 PLIKGATLYKLVERLTYHIYADP-------AFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQP 349 (966)
Q Consensus 277 ~~IkagTL~kLIe~Lt~~~~~D~-------~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~ 349 (966)
-+|+|||+++||++|+.+...|+ .|+++||+|||+||||.+||++|++||+...+.....++.. +...
T Consensus 486 ~~v~~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~~~~~~~~~-----~~~~ 560 (999)
T 4f7z_A 486 YTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMD-----YALN 560 (999)
T ss_dssp CEEEEECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSSSCHHHHHH-----HHHH
T ss_pred eEEeecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCCCCcccchhhhh-----HHHH
Confidence 47999999999999997644333 59999999999999999999999999998876654332222 2234
Q ss_pred hhhHHHHHHHHHhhhcccccccCHHHHHHHHHHHHHhhccc-----hhhhhhhhhhhhhcccCchh--------------
Q psy4663 350 VQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKS-----MRKWVDSVSKVIFRKTDPLE-------------- 410 (966)
Q Consensus 350 iq~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~~~~~-----~~k~~~~l~k~l~r~~~~~~-------------- 410 (966)
+|.||++||+.|++.||+||..|+.++..|..|...+.... ++.....+.+++++......
T Consensus 561 ~~~rv~~vl~~Wv~~~~~df~~d~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (999)
T 4f7z_A 561 NKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFN 640 (999)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHCSSCCHHHHTHHHHHHHHHHHTTSCSCCCCEECC-------
T ss_pred HHHHHHHHHHHHHHhCCchhccCHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhhccccccccccccchhhhccc
Confidence 78899999999999999999999999999999988764322 11111122222211100000
Q ss_pred ---h------------------------------------h-------hhhcc------------------c--------
Q psy4663 411 ---L------------------------------------Q-------KQIKF------------------A-------- 418 (966)
Q Consensus 411 ---~------------------------------------~-------~~~~~------------------~-------- 418 (966)
. . ..... .
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 720 (999)
T 4f7z_A 641 TGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFT 720 (999)
T ss_dssp ----CCCCCCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCSCEEEEEECTTCCEEECCTTCBCCST
T ss_pred cccccccccCCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCCCcceeeccccCCccccCCcccccccc
Confidence 0 0 00000 0
Q ss_pred ---------------cCCCCCCccccccCCcccccccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChh
Q psy4663 419 ---------------FDRSPPPIEWHLKCSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPN 483 (966)
Q Consensus 419 ---------------~~~~~p~i~~~~~~~~~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spn 483 (966)
.+...|..............|+++++.|||+|||++|+++|++|++.||++++|++.++...+||
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~ 800 (999)
T 4f7z_A 721 TLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTAN 800 (999)
T ss_dssp TSCTTCEEEEEEGGGSSSCCCCTTTTCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHH
T ss_pred ccccccccccccccccccCCCchhhcccccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChH
Confidence 00000000000001113356889999999999999999999999999999999998877788999
Q ss_pred HHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHH
Q psy4663 484 LLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENA 563 (966)
Q Consensus 484 i~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~ 563 (966)
|.+++++||++++||+++||.+.++++||++|++||+||.+|++||||||+|||++||++++|+|||+||+.|+.+.++.
T Consensus 801 ~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~ 880 (999)
T 4f7z_A 801 LDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKF 880 (999)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--cchhHHHHHHHHHccCCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCC
Q psy4663 564 LVELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSP 641 (966)
Q Consensus 564 l~~L~~l--~~~n~~~yR~~l~~~~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~ 641 (966)
|++|++| .++||++||++|+++++|||||||+||+||+|+++||+|+++ |+|||+|+++++++|.+|++||+.+
T Consensus 881 ~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~----~linf~k~~~~~~~i~~i~~~q~~~ 956 (999)
T 4f7z_A 881 YAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIANTARTVRYYRSQP 956 (999)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSS----SSEEHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCCC----CcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999 578999999999999999999999999999999999999984 6999999999999999999999999
Q ss_pred CCCCCch------HHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCC
Q psy4663 642 YCLSVEP------RIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRY 683 (966)
Q Consensus 642 Y~~~~~~------~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~ 683 (966)
|+|...+ .++.||+++..+. + +|+||++|+++|||.
T Consensus 957 y~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~S~~~EPr~ 998 (999)
T 4f7z_A 957 FNPDAAQANKNHQDVRSYVRQLNVID---N---QRTLSQMSHRLEPRR 998 (999)
T ss_dssp CCCSSCC--CCCHHHHHHHHTCCCCC---C---HHHHHHHHHTTSCC-
T ss_pred CCCCccchhhhHHHHHHHHHhCCCCC---C---HHHHHHHHHhcCCCC
Confidence 9987654 6888888875442 2 378999999999985
No 4
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=1.2e-57 Score=556.38 Aligned_cols=391 Identities=19% Similarity=0.357 Sum_probs=303.2
Q ss_pred cccccCHHHHHHHHccccCC-------ChhHHHHHhhhcccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccch
Q psy4663 278 LIKGATLYKLVERLTYHIYA-------DPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPV 350 (966)
Q Consensus 278 ~IkagTL~kLIe~Lt~~~~~-------D~~Fv~~FLlTYRsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~i 350 (966)
.+..++.++|.++|...... +..|+..|++||+.|+++.+++..|..+|+....+....++. ++....
T Consensus 182 l~l~~~~erL~~~LL~~~~ld~~~~~~~~~~~~dflLTh~~fm~~~~~~~~ll~~~~~~~~~~~~~~~~-----~~~~~~ 256 (694)
T 3cf6_E 182 TVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERM-----DYALNN 256 (694)
T ss_dssp EEEEECHHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCSSSCHHHHH-----HHHHHH
T ss_pred hhhcccHHHHHHHHHHhcCCCccccccchhhhhhhhheehhhcCcHHHHHHHHHHhccCccCCccccch-----hhhhhH
Confidence 34578999999999854322 258999999999999999999999999997533222221221 122235
Q ss_pred hhHHHHHHHHHhhhcccccccCHHHHHHHHHHHHHhhcc-----chhhhhhhhhhhhhccc-------------------
Q psy4663 351 QFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGK-----SMRKWVDSVSKVIFRKT------------------- 406 (966)
Q Consensus 351 q~RVl~vL~~Wi~~~~~DF~~d~~ll~~L~~Fl~~~~~~-----~~~k~~~~l~k~l~r~~------------------- 406 (966)
+.||+.++..|+..|+.||..|+.+..-|+.|...+..+ .++.....+.+++.+..
T Consensus 257 ~~~v~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (694)
T 3cf6_E 257 KRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNT 336 (694)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHhhcCCcccCccccccccccccCC
Confidence 679999999999999999999998877777775443221 01111111111000000
Q ss_pred --------------------------------------------------Cc---------hhhhhhh-----------c
Q psy4663 407 --------------------------------------------------DP---------LELQKQI-----------K 416 (966)
Q Consensus 407 --------------------------------------------------~~---------~~~~~~~-----------~ 416 (966)
.. ...+... .
T Consensus 337 ~~~~~~~~~~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~ 416 (694)
T 3cf6_E 337 GDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTT 416 (694)
T ss_dssp -------CCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTSCEEECCTTCBCCGGG
T ss_pred CCcccccCCCCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcccceEEEEeecCcccccCccccccccc
Confidence 00 0000000 0
Q ss_pred cccC------------CCCCCccccccCCcccccccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChhH
Q psy4663 417 FAFD------------RSPPPIEWHLKCSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNL 484 (966)
Q Consensus 417 ~~~~------------~~~p~i~~~~~~~~~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spni 484 (966)
++.+ ...|.-++.....+...+|+++++.|||+|||++|+++|++|.+.||++++|++.++...+|||
T Consensus 417 ~~~~~r~~~~~~~~~~~l~p~~~~~~p~~~~~~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni 496 (694)
T 3cf6_E 417 LTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANL 496 (694)
T ss_dssp SCTTCEEEEEEGGGGGGCCCCGGGSCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHH
T ss_pred cccccceeccccccccccCCChhhcCCCCCCCCchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchH
Confidence 0000 0000000000011122458899999999999999999999999999999999988777789999
Q ss_pred HHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHH
Q psy4663 485 LKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENAL 564 (966)
Q Consensus 485 ~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l 564 (966)
.+++++||.+++||+++||.+.+.++||++|++||+||.+|+++|||||+|||++||++++|+||++||+.|+.+.++.|
T Consensus 497 ~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~ 576 (694)
T 3cf6_E 497 DLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFY 576 (694)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc--cchhHHHHHHHHHccCCCCccchhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCC
Q psy4663 565 VELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPY 642 (966)
Q Consensus 565 ~~L~~l--~~~n~~~yR~~l~~~~~P~IPflGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y 642 (966)
++|+++ ..+||++||++++++++|||||||+||+||+|+++||+++++ |+|||+|+|+++++|.+|++||+.+|
T Consensus 577 ~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~DL~fi~egn~~~~~----~lINf~K~r~i~~ii~~i~~~q~~~y 652 (694)
T 3cf6_E 577 AEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIANTARTVRYYRSQPF 652 (694)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHHHHHHHHHSCSEET----TEEEHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHHHHHHHcCCCchhc----cCcCHHHHHHHHHHHHHHHHHhhCCC
Confidence 999998 578999999999999999999999999999999999999984 79999999999999999999999999
Q ss_pred CCCC------chHHHHHHHhhCCCCCCChhhhhhHHHHhhhhcccCC
Q psy4663 643 CLSV------EPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRY 683 (966)
Q Consensus 643 ~~~~------~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~iEPr~ 683 (966)
++.. +++|++||+++..++ + +|+||++|+++|||.
T Consensus 653 ~~~~~~~~~~~~~i~~~l~~l~~~~---~---e~~l~~lSl~~EPr~ 693 (694)
T 3cf6_E 653 NPDAAQANKNHQDVRSYVRQLNVID---N---QRTLSQMSHRLEPRR 693 (694)
T ss_dssp C---------CHHHHHHHTSCCCCC---C---HHHHHHHHHHHCC--
T ss_pred CcCccccccchHHHHHHHHhCCCCC---C---HHHHHHHHHhcCCCC
Confidence 9875 578999999876542 2 267999999999986
No 5
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=4.4e-57 Score=484.24 Aligned_cols=235 Identities=33% Similarity=0.659 Sum_probs=221.7
Q ss_pred ccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHHHHHHHH
Q psy4663 441 VLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIE 520 (966)
Q Consensus 441 ~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kfI~ 520 (966)
.++|.|||+|||++|+++|++|.+.||++++|++.++...+|||.+++++||.+++||+++||.+++.++||++|++||+
T Consensus 3 ~~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~ 82 (240)
T 2ije_S 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVA 82 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998776679999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHccCCCCccchhHHHh
Q psy4663 521 IMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSINPPCVPFFGMYLT 598 (966)
Q Consensus 521 IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~~~P~IPflGv~L~ 598 (966)
||.+|+++|||||+|||++||++++|+||++||+.|+.+.++.|++|+++ .++||++||++++++.+|||||||+||+
T Consensus 83 iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~ 162 (240)
T 2ije_S 83 VADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLT 162 (240)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHH
T ss_pred HHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHH
Confidence 99999999999999999999999999999999999999999999999998 5689999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCChhhhhhHHHHhhhh
Q psy4663 599 NILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLK 678 (966)
Q Consensus 599 DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~ 678 (966)
||+|+++||++++++ |+|||+|+|+++++|.+|++||+.+|+|.+++.|++||.++..+ .+ +|+||++|++
T Consensus 163 DL~~i~egnp~~~~~---~lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~~~---~~---e~~ly~~Sl~ 233 (240)
T 2ije_S 163 DLVFIEEGTPNYTED---GLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFM---LD---EESLYESSLL 233 (240)
T ss_dssp HHHHHHHHSCSBCTT---SCBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCTTC---CC---HHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCC---CcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCcCC---CC---HHHHHHHHHH
Confidence 999999999999876 89999999999999999999999999999999999999876432 22 2679999999
Q ss_pred cccCCc
Q psy4663 679 IEPRYA 684 (966)
Q Consensus 679 iEPr~~ 684 (966)
+|||+.
T Consensus 234 ~EPr~~ 239 (240)
T 2ije_S 234 IEPKLP 239 (240)
T ss_dssp HSCC--
T ss_pred hCCCCC
Confidence 999974
No 6
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=3.3e-55 Score=476.52 Aligned_cols=243 Identities=26% Similarity=0.529 Sum_probs=223.5
Q ss_pred ccccccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCCCCChhHHHHHHHHhccchhhhhhhcccCCHHHHHHH
Q psy4663 435 EEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAI 514 (966)
Q Consensus 435 ~~~~ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~spni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 514 (966)
..|+|+++++.|||+|||++|+++|++|++.||++++|+++++...+|||.+++++||.+++||+++||.+.+.++||++
T Consensus 24 ~~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 103 (271)
T 3qxl_A 24 VVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEI 103 (271)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHH
Confidence 56889999999999999999999999999999999999987766678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhc--cchhHHHHHHHHHccC-CCCcc
Q psy4663 515 VSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELREL--GNDHFRKYQERLRSIN-PPCVP 591 (966)
Q Consensus 515 i~kfI~IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l--~~~n~~~yR~~l~~~~-~P~IP 591 (966)
|++||+||++|+++|||||+|||++||++++|+||++||+.|+.+.++.|++|+++ .++||++||+.++++. +||||
T Consensus 104 i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IP 183 (271)
T 3qxl_A 104 LSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIP 183 (271)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBC
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998 5799999999999886 89999
Q ss_pred chhHHHhhhhhhhhcCCCCCCCCCCccccHHHhhhHHHHHHHHHHhhcC-CCC-CCCchHHHHHHHhhCCCCCCChhhhh
Q psy4663 592 FFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNS-PYC-LSVEPRIRRFLENLTPFDNWKEIDIS 669 (966)
Q Consensus 592 flGv~L~DL~~i~egnpd~i~~~~~~lINf~K~r~i~~ii~~i~~~Q~~-~Y~-~~~~~~i~~~l~~l~~~~~~~e~~~~ 669 (966)
|||+||+||+|+++|||++ + +.++||.|+|++++++.+|++||+. +|+ |.+++.||+||.++..++++ ....|
T Consensus 184 flg~~L~DL~fi~~g~p~~--~--~~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~l~~~~~i~~~-~~~~e 258 (271)
T 3qxl_A 184 YLGIYLLDLIYIDSAYPAS--G--SIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEEL-QKFVE 258 (271)
T ss_dssp CHHHHHHHHHHHHHHSCSS--S--CHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHTSCCCGGG-HHHHH
T ss_pred chHHHHHHHHHHHhcCCCc--c--cccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHhHHHHhh-cCCCH
Confidence 9999999999999999997 2 3578899999999999999999998 994 99999999999987654332 12245
Q ss_pred hHHHHhhhhcccC
Q psy4663 670 NYLYEQSLKIEPR 682 (966)
Q Consensus 670 d~ly~lSl~iEPr 682 (966)
|++|++|+++||.
T Consensus 259 d~~y~lSl~iEP~ 271 (271)
T 3qxl_A 259 DDNYKLSLRIEPG 271 (271)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCC
Confidence 8899999999994
No 7
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00 E-value=9.7e-35 Score=328.85 Aligned_cols=216 Identities=44% Similarity=0.785 Sum_probs=180.1
Q ss_pred hhHHHHHhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCcch-----
Q psy4663 3 GFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNY-PRNGRDTGI----- 76 (966)
Q Consensus 3 ~f~~~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~-~k~~~~~~~----- 76 (966)
+++++.++.|++||++|||||+||+|||++|+|+|++.+|+++|++|+.+|+.++..||++|... .+ |..++
T Consensus 133 ~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~--r~~~e~~~~~ 210 (354)
T 1dbh_A 133 GFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAK--RRLSESACRF 210 (354)
T ss_dssp THHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHH--HHHHHTC---
T ss_pred HHHHHhcCCHHHHHHHHHHHhchHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccchhhhh
Confidence 56678889999999999999999999999999999877999999999999999999999977522 11 11111
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccccc
Q psy4663 77 RAYNRLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSV 156 (966)
Q Consensus 77 ~~~~~~r~~e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~ 156 (966)
++|+++|+.|++++|.++|++|+||+|.++.+++|+||++|.|.++ |. .++||+|||+|+||+||+..++.+++
T Consensus 211 ~~ne~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li~eG~l~~~--g~---~~~~~~fLF~d~Ll~~k~~~~~~~~~- 284 (354)
T 1dbh_A 211 YSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRV--GA---KHERHIFLFDGLMICCKSNHGQPRLP- 284 (354)
T ss_dssp ----------CTHHHHHHHTTEESCCSSCGGGTCCCEEEEEEEEET--TC---SSCEEEEEESSEEEEEEECTTCCCCT-
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCcccccccceEEEEeeEEEE--ec---CceEEEEEeCCEEEEEecCCCCCCCC-
Confidence 2355778899999999999999999999999999999999999988 32 35999999999999999975433333
Q ss_pred ccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 157 TAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 157 ~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
|..+..|+||+.|+|.++.|.+..|+++.+|+|+|.+.++..|+|+|+|.++|+.||++|.+++++++++
T Consensus 285 ----~~~~~~y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~~~l~ 354 (354)
T 1dbh_A 285 ----GASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLE 354 (354)
T ss_dssp ----TSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHTTTTC-
T ss_pred ----CCCCcceeEEEEEeccceEEEeCCcccccCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence 4456799999999999999999999988999999998865679999999999999999999999998874
No 8
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.97 E-value=5e-31 Score=309.22 Aligned_cols=206 Identities=19% Similarity=0.333 Sum_probs=169.5
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
+.|.+||++|||||+||+|||++|+|+|+.+ +||++|++|+.+|+.++.++|+.+ |+.|++
T Consensus 248 l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~~------------------r~~e~~ 309 (466)
T 2pz1_A 248 ISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERK------------------RRLENI 309 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred CCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 4588999999999999999999999999988 999999999999999999998877 888999
Q ss_pred HHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceE
Q psy4663 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~ 168 (966)
++|.+||++|+||+|.++...+|+||++|.|+++... +++.++||+|||+|+|||||+... .++.|.
T Consensus 310 ~~l~~lq~~i~~~~~~~l~~~~r~li~~G~l~~~~~~-~~~~~~r~~fLF~d~Ll~~k~~~~------------~~~~~~ 376 (466)
T 2pz1_A 310 DKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQP-QAKSQQRMFFLFDHQLIYCKKDLL------------RRDVLY 376 (466)
T ss_dssp HHHHHHHHHSBTCCSSCHHHHCSCEEEEEEEEEECTT-TCCEEEEEEEEETTEEEEEEECSS------------CTTCEE
T ss_pred HHHHHHHHHhcCCCCcccccccceeEEeeeEEEEecC-CCCeeEEEEEEECCEEEEEEeccc------------cCCceE
Confidence 9999999999999999988889999999999998532 234469999999999999998532 346799
Q ss_pred EeEEEeeccceEEeCCCCC------CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhhhhhHhhhhhhhcccc
Q psy4663 169 LKERFFIRRIEILDLPDSD------DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEE 241 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~------~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~~~~~r~ldsil~~ee 241 (966)
||+.|+|.++.|++..|++ .++|+|+|.+.+. ..|+|+|+|.++|+.||++|.+++.+...++.++..+.+++
T Consensus 377 ~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~~~~~~~~~e~~ 456 (466)
T 2pz1_A 377 YKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQ 456 (466)
T ss_dssp EEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred EeeeeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhhhhcCcccCHHH
Confidence 9999999999999998865 3579999997653 45999999999999999999999998888887777777888
Q ss_pred cCCCc
Q psy4663 242 KKHPL 246 (966)
Q Consensus 242 ~~~~~ 246 (966)
+++++
T Consensus 457 ~k~~~ 461 (466)
T 2pz1_A 457 RKQAM 461 (466)
T ss_dssp -----
T ss_pred HHHHH
Confidence 87764
No 9
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.97 E-value=8.6e-31 Score=301.51 Aligned_cols=203 Identities=18% Similarity=0.289 Sum_probs=176.7
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
+.|.+||++|||||+||+|||++|+|+|+++ +|+++|++|+.+|+.++.++|+.+ |+.|++
T Consensus 171 l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~~------------------r~~e~~ 232 (402)
T 2dfk_A 171 IAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERK------------------RRLENI 232 (402)
T ss_dssp CCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHTH
T ss_pred CCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 4688999999999999999999999999988 999999999999999999998877 788999
Q ss_pred HHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceE
Q psy4663 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~ 168 (966)
++|.+||++|+||+|.++...+|+||++|.|++++... ++.++||+|||+|+||+||+... .++.|.
T Consensus 233 ~~l~~lq~~i~~~~~~~l~~~~r~Li~~G~l~~~~~~~-~k~~~r~~fLF~d~Ll~~k~~~~------------~~~~~~ 299 (402)
T 2dfk_A 233 DKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPY-GRNQQRVFFLFDHQMVLCKKDLI------------RRDILY 299 (402)
T ss_dssp HHHHHHHHHSBTCCSSCGGGTCCCEEEEEEEEEESSTT-CCCEEEEEEEETTEEEEEEECSS------------CTTCEE
T ss_pred HHHHHHHHHhcCCCCccccccccceEEeceEEEEeccC-CceEEEEEEeeCCEEEEEEeccc------------cCCceE
Confidence 99999999999999999988899999999999885322 23469999999999999998532 345799
Q ss_pred EeEEEeeccceEEeCCCCC------CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhhhhhHhhhhhhhcccc
Q psy4663 169 LKERFFIRRIEILDLPDSD------DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEE 241 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~------~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~~~~~r~ldsil~~ee 241 (966)
||+.|+|.++.|++..|++ .++|+|+|.+.++ ..|+|+|+|.++|+.||++|.+++.+...++.++..+.+++
T Consensus 300 ~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~~~~g~~~~e~~ 379 (402)
T 2dfk_A 300 YKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQ 379 (402)
T ss_dssp EEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred EeeeeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHH
Confidence 9999999999999998864 2578999998753 45999999999999999999998888877776666666555
Q ss_pred cC
Q psy4663 242 KK 243 (966)
Q Consensus 242 ~~ 243 (966)
++
T Consensus 380 ~k 381 (402)
T 2dfk_A 380 KR 381 (402)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 10
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.95 E-value=1.5e-27 Score=274.96 Aligned_cols=184 Identities=16% Similarity=0.318 Sum_probs=154.9
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||+|||++|+|+|++.+|+++|++|+.+|+.++.++|+.+ |+.|+.
T Consensus 150 ~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~Al~~i~~v~~~iNe~~------------------r~~e~~ 211 (406)
T 2vrw_B 150 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRLALDAMRDLAQCVNEVK------------------RDNETL 211 (406)
T ss_dssp SCCHHHHTTHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred CcchHHHhhhHHHHHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 35699999999999999999999999999544999999999999999999998877 888999
Q ss_pred HHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceE
Q psy4663 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~ 168 (966)
++|.+||++|+||++. +.. .|+|+++|.|.+...+ +++.++||+|||||+||+||++ +++|.
T Consensus 212 ~~l~~lq~~i~~~~~~-l~~-~grli~~G~l~~~~~~-~~~~~~~~~fLF~d~Ll~~k~k---------------~~~y~ 273 (406)
T 2vrw_B 212 RQITNFQLSIENLDQS-LAN-YGRPKIDGELKITSVE-RRSKTDRYAFLLDKALLICKRR---------------GDSYD 273 (406)
T ss_dssp HHHHHHHHHEESCSSC-GGG-GCSEEEEEEEEEECSS-CCSCEEEEEEEESSEEEEEEEE---------------TTEEE
T ss_pred HHHHHHHHHHhCCCcc-ccc-cCcccccccEEEEecC-CCccceEEEEecCCEEEEEEec---------------CCceE
Confidence 9999999999999985 333 4679999999887432 3344799999999999999982 35799
Q ss_pred EeEEEeeccceEEeCCCCC----CCcceEEEEeC-CCccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 169 LKERFFIRRIEILDLPDSD----DYKNAFQIVPR-CGSPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~----~~~naF~I~~~-~~~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
||+.|+|.++.|.+..+++ .+.|+|.|... +...|+|+|+|.++|+.||++|.+++.+..
T Consensus 274 ~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~ 338 (406)
T 2vrw_B 274 LKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 338 (406)
T ss_dssp EEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887654 46899999975 345699999999999999999988766543
No 11
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.95 E-value=2.7e-27 Score=269.11 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=153.7
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++.|.+||++|||||+||+|||++|+|+|+++ +|+++|++|++.|+.++.++|+.+ |+.|+
T Consensus 155 ~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~------------------~~~e~ 216 (368)
T 1xcg_A 155 RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAV------------------KQTEN 216 (368)
T ss_dssp TCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred cCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Confidence 56789999999999999999999999999988 999999999999999999998888 78899
Q ss_pred HHHHHHHhhhccCCcc-----------CCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccccc
Q psy4663 88 IEKTNELSKTVDGWTS-----------VDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSV 156 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g-----------~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~ 156 (966)
.++|.+||+.|+||.+ .++...+|+||++|.|.+. .++++.++||+|||||+||+||+...+..+..
T Consensus 217 ~~~l~~i~~~l~~~~~~~~~~pl~~~~~~l~~~~R~li~~G~l~~~--~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~ 294 (368)
T 1xcg_A 217 RHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWR--ISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKC 294 (368)
T ss_dssp HHHHHHHHHHEECHHHHSCSCTTTGGGGGCCGGGSCEEEEEEEEEC--CSSSCCCEEEEEEESSEEEEEEECSSCEECCC
T ss_pred HHHHHHHHHHhCcchhhhcccchhhhhhhcccccceEEeecceEee--ecCCCeeEEEEEcccccHHHhhcccccceeee
Confidence 9999999999998742 2445568999999999865 23334569999999999999998643211100
Q ss_pred --ccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCC----CccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 157 --TAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRC----GSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 157 --~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~----~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
....|..+..|.|++.|+|.++.|.+..+ -+++|.|.... ...|+|+|+|.++|+.||++|.+++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~---~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 295 HSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp -------------CCCSEEEGGGEEEEECSS---CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcccCcCCceEccceeeecccC---CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 00012234589999999999999998642 24789887542 245999999999999999999987764
No 12
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.9e-27 Score=272.15 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=151.0
Q ss_pred HHhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHH
Q psy4663 8 VKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQ 86 (966)
Q Consensus 8 vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e 86 (966)
.++.|.+||++|||||+||+|||++|+|+|+.+ +|+++|++|+..|+.++.++|+.+ ++.|
T Consensus 158 ~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~------------------~~~e 219 (434)
T 3mpx_A 158 GSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSM------------------EQGE 219 (434)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHC------------------TTHH
T ss_pred CCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Confidence 456799999999999999999999999999877 999999999999999999999888 6778
Q ss_pred HHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCc
Q psy4663 87 AIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGE 166 (966)
Q Consensus 87 ~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~ 166 (966)
+.++|.++|++|+||. ++...+|.||++|.+.+++++ +.++||+|||+|+|||||+. .+++
T Consensus 220 ~~~~l~~l~~~i~~~~--~l~~~~r~li~~g~l~~~~~~---~~~~r~~fLF~d~Ll~~k~~--------------~~~~ 280 (434)
T 3mpx_A 220 NLQKLVHIEHSVRGQG--DLLQPGREFLKEGTLMKVTGK---NRRPRHLFLMNDVLLYTYPQ--------------KDGK 280 (434)
T ss_dssp HHHHHHHHHHHEETCC--CCCCTTCCEEECCEEEEEETT---EEEEEEEEEESSEEEEEEEC--------------TTSC
T ss_pred HHHHHHHHHHHhcCcc--ccccCCcceEecceEEEEeCC---CceEEEEEEECCEEEEEEec--------------CCCe
Confidence 9999999999999985 677889999999999998532 33599999999999999984 2357
Q ss_pred eEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 167 YRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 167 y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
|+|++.|+|.++.|.+..++ +.+|+|+|.+. +.+|+|+|+|.++|+.||++|.+++...
T Consensus 281 y~~k~~i~L~~l~v~~~~~~-~~~~~f~i~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~e~ 339 (434)
T 3mpx_A 281 YRLKNTLAVANMKVSRPVME-KVPYALKIETS-ESCLMLSASSCAERDEWYGCLSRALPED 339 (434)
T ss_dssp EEEEEEEEC-----CCCCCT-TSCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHC----
T ss_pred EEEEEEEEcCCcEEEecCCC-CCCeeEEEecC-CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876554 68999999876 5579999999999999999998866543
No 13
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=266.31 Aligned_cols=195 Identities=15% Similarity=0.203 Sum_probs=154.0
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++.|.+||++|||||+||+|||++|+|+|+++ +|+++|++|++.|+.++.++|+.+ ++.|+
T Consensus 197 ~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~~------------------~~~e~ 258 (418)
T 3t06_A 197 RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAV------------------KQTEN 258 (418)
T ss_dssp TCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Confidence 45689999999999999999999999999987 999999999999999999999888 78899
Q ss_pred HHHHHHHhhhccCCccC-----------CCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccccc
Q psy4663 88 IEKTNELSKTVDGWTSV-----------DIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSV 156 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~-----------di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~ 156 (966)
.++|.+||+.|+||.+. ++...+|+||++|.|++.. ++++.++||+|||+|+|||||++..+..+..
T Consensus 259 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~--~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~ 336 (418)
T 3t06_A 259 RHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRI--SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKC 336 (418)
T ss_dssp HHHHHHHHHSEECCTTSSCSCTTTTTTSSCCGGGSCEEEEEEEEECC--BTTBCCEEEEEEESSEEEEEEECSSCEECCC
T ss_pred HHHHHHHHHHhCcccccccccccchhhcccccccceeEEeceEEEEe--CCCCeEEEEEEecCCEEEEEEEcCCceEEee
Confidence 99999999999998652 3344569999999999773 3334569999999999999998643221100
Q ss_pred --ccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCC----CccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 157 --TAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRC----GSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 157 --~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~----~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
....|..+.+|.|+..|.|.++.|++..+ -.++|.|+... ...|+|+|+|.+||+.||++|.+++.+
T Consensus 337 ~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~---~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 337 HSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp -------------CCCSEEEGGGEEEEECSS---CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cccccccCCCcccccCCceechhceeccccc---cCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 00013355689999999999999997643 34689888653 246999999999999999999886544
No 14
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.94 E-value=3.1e-26 Score=275.78 Aligned_cols=184 Identities=16% Similarity=0.324 Sum_probs=156.8
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||+|||++|+|+|++.+|+++|++|+++|+.++..+|+.+ |+.|++
T Consensus 322 ~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~~~~d~~~L~~Al~~i~~v~~~iNe~~------------------r~~e~~ 383 (587)
T 3ky9_A 322 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAMEKENLRLALDAMRDLAQCVNEVK------------------RDNETL 383 (587)
T ss_dssp SCCHHHHHHHHHHHHTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred CCCHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 45689999999999999999999999999977999999999999999999998877 888999
Q ss_pred HHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceE
Q psy4663 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~ 168 (966)
++|.+||++|+||++. +.. .|+++++|.|.+... .+++.++||+|||+|+|||||++ +.+|.
T Consensus 384 ~~l~~lq~~i~~~~~~-l~~-~grll~~G~l~~~~~-~~~~~~~r~~fLF~d~Ll~~k~~---------------~~~y~ 445 (587)
T 3ky9_A 384 RQITNFQLSIENLDQS-LAH-YGRPKIDGELKITSV-ERRSKMDRYAFLLDKALLICKRR---------------GDSYD 445 (587)
T ss_dssp HHHHHHHHHEETCCSC-GGG-GCCEEEEEEEEEECS-SCCSCEEEEEEEETTEEEEEEEE---------------TTEEE
T ss_pred HHHHHHHHHhhcCccc-hhh-cCceEEEeeEEEEec-cCCCcceEEEEEECCEEEEEEec---------------CCEEE
Confidence 9999999999999874 443 466999999998753 33445799999999999999983 35899
Q ss_pred EeEEEeeccceEEeCCCCC----CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 169 LKERFFIRRIEILDLPDSD----DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~----~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
||+.|+|.++.|.+..+++ .++|+|.|....+ .+|+|+|+|.+||+.||++|.+++.+..
T Consensus 446 ~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~ 510 (587)
T 3ky9_A 446 LKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 510 (587)
T ss_dssp EEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred eeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999987653 4789999998753 4699999999999999999988775543
No 15
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.93 E-value=5.1e-26 Score=259.39 Aligned_cols=194 Identities=13% Similarity=0.205 Sum_probs=146.9
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||+|||++|+|+|++.+|++++++|++.|+.++.++|+.+ |+.|+.
T Consensus 162 ~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~A~~~i~~v~~~in~~~------------------~~~e~~ 223 (377)
T 3p6a_A 162 RLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAV------------------RDMEDL 223 (377)
T ss_dssp TCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred CCCHHHHHHHHHHHhhhHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 45789999999999999999999999999988999999999999999999998888 888999
Q ss_pred HHHHHHhhhcc-------------CCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccc
Q psy4663 89 EKTNELSKTVD-------------GWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVS 155 (966)
Q Consensus 89 ~kl~eiQ~~I~-------------gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~ 155 (966)
++|.+||+.|+ +|.+.++.+ |+||++|.|++.. .+++.++||+|||+|+|||||++..+..+.
T Consensus 224 ~~l~~iq~~l~~~~~~~~~~~~~~~~~~l~~~~--r~li~eG~l~~~~--~~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k 299 (377)
T 3p6a_A 224 LRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK--KKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLK 299 (377)
T ss_dssp HHHHHHHHHEECHHHHHCCCGGGSSSTTCCCTT--SCEEEEEEEEEES--SSSCEEEEEEEEESSEEEEEEEETTEEECC
T ss_pred HHHHHHHHhcCcccccccccchhhhhccccccc--ceEEEECCcEEEe--cCCCeEEEEEEeeCCEEEEEEEcCceeEEe
Confidence 99999999996 488777764 9999999997663 333457999999999999999753211000
Q ss_pred ccc--CCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeC--CCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 156 VTA--PLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPR--CGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 156 ~~~--~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~--~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
..+ ..+....++++...|.|.++.|.+..+. -+..|.|... +...|+|.|+|.+||+.||++|.+++.+
T Consensus 300 ~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~--~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~ 372 (377)
T 3p6a_A 300 SHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD--HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS 372 (377)
T ss_dssp CCCCC---------CSCSEEEGGGEEEEECTTC--TTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ecccccccCccccCCCCCeEechhhhccccccc--cceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 000 0000112222334689999999885443 2334444432 2344999999999999999999886654
No 16
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.93 E-value=1.7e-26 Score=260.35 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=150.7
Q ss_pred HHHhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHH
Q psy4663 7 AVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQ 85 (966)
Q Consensus 7 ~vk~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~ 85 (966)
..++.|.+||++|||||+||+|||++|+|+|+.+ +|+++|++|+.+|+.++.++|+.+ |+.
T Consensus 144 ~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~------------------~~~ 205 (346)
T 2z0q_A 144 SRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKT------------------GES 205 (346)
T ss_dssp ----CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
T ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH------------------HHH
Confidence 3467799999999999999999999999999987 999999999999999999998887 677
Q ss_pred HHHHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCC
Q psy4663 86 QAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQG 165 (966)
Q Consensus 86 e~l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~ 165 (966)
|+..++.+|+...+||++ ++...+|+||++|.+.+. .+ ++||+|||+|+||+||+.... .+.
T Consensus 206 e~~~~~~~l~~~~~~~~~-~l~~~~r~li~~G~l~~~---~~---~~~~~fLF~d~Ll~~k~~~~~-----------~~~ 267 (346)
T 2z0q_A 206 ECRYYKERLLYLEEGQKD-SLIDSSRVLCCHGELKNN---RG---VKLHVFLFQEVLVITRAVTHN-----------EQL 267 (346)
T ss_dssp HHHHHHHHEECCSTTCCC-HHHHTCCCEEEEEEEEET---TS---CEEEEEEESSEEEEEEEEEET-----------TEE
T ss_pred HHHHHHHHHHhhhccCCC-ccccCCeEEEEeceeEEC---CC---cEEEEEECCCcEEEEEEeccC-----------Cce
Confidence 888888889887788876 355568999999999763 22 499999999999999984220 122
Q ss_pred ceE-EeEEEeeccceEEeCCCC---------------CCCcceEEEEeC---CCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 166 EYR-LKERFFIRRIEILDLPDS---------------DDYKNAFQIVPR---CGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 166 ~y~-~k~~i~l~~~~I~d~~d~---------------~~~~naF~I~~~---~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
.|. ||+.|+|.++.|.+..|+ +..+|+|+|... .+..|+|+|+|.++|+.||++|.+++
T Consensus 268 ~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 268 CYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp EEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eeeeecCCcchhhceeeecCCCccccCccccccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 465 689999999999999876 236899999854 23459999999999999999998764
No 17
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.93 E-value=1.1e-25 Score=254.76 Aligned_cols=181 Identities=19% Similarity=0.304 Sum_probs=147.2
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||+|||++|+|+|++.+|+++|++|+.+|+.++..+|+.+ +
T Consensus 137 ~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~L~~Al~~i~~v~~~iN~~~------------------~----- 193 (353)
T 1kz7_A 137 KLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSM------------------H----- 193 (353)
T ss_dssp SSCHHHHHTHHHHHHHHHHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHH------------------H-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHH------------------H-----
Confidence 45789999999999999999999999999988999999999999999999998876 1
Q ss_pred HHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCC----------CCCccceEEEeccCceEEeecCCCCccccccc
Q psy4663 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGK----------KTESTERVCFLFDGLLLLCKPNSKRTSVSVTA 158 (966)
Q Consensus 89 ~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~----------~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~ 158 (966)
|..|+||+| ++.. .|+||++|.|.++.... +.+.++||+|||+|+|||||+......
T Consensus 194 ------~~~i~~~~~-~L~~-~g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~----- 260 (353)
T 1kz7_A 194 ------LIAITGYDG-NLGD-LGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGE----- 260 (353)
T ss_dssp ------HTTEESCCS-CGGG-GCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCS-----
T ss_pred ------HHHHhCCCC-ChhH-hhhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEecccccc-----
Confidence 235889998 4544 57899999999774321 113479999999999999998532100
Q ss_pred CCC-CCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhhhhh
Q psy4663 159 PLG-GNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTKSMF 229 (966)
Q Consensus 159 ~~g-~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~~~~ 229 (966)
| ..+..|.||+.|+|.++.|++..+++ .++|+|...+. ..|+|+|+|.++|+.||++|.++..+..-
T Consensus 261 --~~~~~~~y~~k~~i~l~~~~v~e~~~~~--~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 261 --GYEKAPSYSYKQSLNMTAVGITENVKGD--TKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp --SCCCSCEEEEEEEEEGGGEEEECCBTTB--TTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCeEEEEEEeEcccceeeEcCCCC--CceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 13468999999999999999876654 67899987643 45999999999999999999987665554
No 18
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.93 E-value=9.6e-26 Score=257.99 Aligned_cols=200 Identities=10% Similarity=0.135 Sum_probs=151.8
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||+|||++|+|+|++++|+++|++|+++|+.++.++|+.+ |+.|+.
T Consensus 160 ~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~Al~~i~~v~~~iN~~~------------------~~~e~~ 221 (385)
T 1txd_A 160 RLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAV------------------KEAENK 221 (385)
T ss_dssp TCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred CCChHHHhhhHHhHhhhHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 45689999999999999999999999999988999999999999999999998888 888999
Q ss_pred HHHHHHhhhccCC--c---cC------CCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccccc-
Q psy4663 89 EKTNELSKTVDGW--T---SV------DIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSV- 156 (966)
Q Consensus 89 ~kl~eiQ~~I~gw--~---g~------di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~- 156 (966)
++|.+||+.|++. . +. ++...+|+||++|.|++.. .+++.++||+|||||+||+||++..+..+..
T Consensus 222 ~~l~~i~~~l~~~~~~~~~~p~~~~~~~l~~~~R~li~eG~l~~~~--~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~ 299 (385)
T 1txd_A 222 QRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHEGPLVWKV--NRDKTIDLYTLLLEDILVLLQKQDDRLVLRCH 299 (385)
T ss_dssp HHHHHHHHHEECCCC-------CHHHHTCCGGGSCEEEEEEEEEES--SSSCBCCEEEEEESSEEEEEEEETTEEECCC-
T ss_pred HHHHHHHHhhcchhcccccccchhhhhhcccccceEEEECcEEEEc--CCCCeEEEEEEecCCeeEEEEecCCeeEEeec
Confidence 9999999999852 1 11 2334579999999998652 3334469999999999999998543211000
Q ss_pred cc-CCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCC--CccEEEEeCCchhhhhhHHHHHHHhhhhhhH
Q psy4663 157 TA-PLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRC--GSPVILIANSPEDKNNWMADLIMLNTKSMFE 230 (966)
Q Consensus 157 ~~-~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~--~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~ 230 (966)
.. ..+..+++|+|++.|.|.++.|.+..+. .++.|.|.... ...|+|+|+|.++|+.||++|.+++.+....
T Consensus 300 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d--~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~ 374 (385)
T 1txd_A 300 SKILASTADSKHTFSPVIKLSTVLVRQVATD--NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ 374 (385)
T ss_dssp ------------CCCSEEEGGGEEEEECCC---CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcCCCCceecccccccccccC--CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence 00 0012346799999999999999986532 34567776432 3459999999999999999999877665543
No 19
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.93 E-value=1.2e-25 Score=267.41 Aligned_cols=193 Identities=14% Similarity=0.203 Sum_probs=147.3
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
++.|.+||++|||||+||.|||++|+|+|++.+||++|++|+..|+.++.++|+.+ |+.|+.
T Consensus 315 ~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~~~d~~~L~~Al~~i~~v~~~iNe~~------------------r~~e~~ 376 (536)
T 3odw_A 315 RLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAV------------------RDMEDL 376 (536)
T ss_dssp TCCHHHHTTHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 45689999999999999999999999999988999999999999999999998888 888999
Q ss_pred HHHHHHhhhccC-------------CccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccc
Q psy4663 89 EKTNELSKTVDG-------------WTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVS 155 (966)
Q Consensus 89 ~kl~eiQ~~I~g-------------w~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~ 155 (966)
++|.+||+.|++ |.+.++. +|+||+||.|.+.. .+++.++||+|||+|+|||||++..+..+.
T Consensus 377 ~kL~~iq~~L~~~~~~~~~~~~i~~~~~ldl~--~R~LI~eG~l~~~~--~~~k~~~r~~fLF~D~LL~~k~k~~ky~~k 452 (536)
T 3odw_A 377 LRLKDYQRRLDLSHLRQSSDPMLSEFKNLDIT--KKKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLK 452 (536)
T ss_dssp HHHHHHHHHEECTTTTTC---CCTTSSSCCCT--TSCEEEEEEEEEES--CC---CEEEEEEESSEEEEEEEETTEEECC
T ss_pred HHHHHHHHHhcccccccccccchhhhcccccc--cceeeeecceEEEe--cCCCeeEEEEEEcCCEEEEEEEcCCeEEEe
Confidence 999999999863 7766665 69999999998773 333446999999999999999853311100
Q ss_pred cc--cCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeC---CCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 156 VT--APLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPR---CGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 156 ~~--~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~---~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.. ...+....++.|+..|.|.++.|.+..+. .++|.++.. +...|+|+|+|.+||+.||++|.+++.+
T Consensus 453 ~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d---~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~ 525 (536)
T 3odw_A 453 SHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD---HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS 525 (536)
T ss_dssp CC------------CCCSEEEGGGEEEEECTTC---TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ecccccccccccccccCceeecccceeeccccc---CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 00 00011233556666799999999986543 245555543 3456999999999999999999885543
No 20
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.92 E-value=1.3e-24 Score=247.87 Aligned_cols=203 Identities=17% Similarity=0.254 Sum_probs=150.3
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++.|.+||++|||||+||+|||++|+|+|+.+ +|+.+|++|+++|+.++.++|+.+ |+.|+
T Consensus 150 ~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~~------------------r~~e~ 211 (377)
T 1foe_A 150 SSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQ------------------KIHEE 211 (377)
T ss_dssp GGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred CcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Confidence 46799999999999999999999999999977 999999999999999999998877 66777
Q ss_pred HHHHHH-HhhhccCCccCCCCc-ccceEeeeccEEEeec----CCCCCccceEEEeccCceEEe-ecCCCC-ccccc--c
Q psy4663 88 IEKTNE-LSKTVDGWTSVDIGQ-CCNEFFREDTLLKLNI----GKKTESTERVCFLFDGLLLLC-KPNSKR-TSVSV--T 157 (966)
Q Consensus 88 l~kl~e-iQ~~I~gw~g~di~~-~~~~li~eG~l~ki~~----~~~~~~~eR~~FLFd~~Ll~c-K~~~~~-~~~~~--~ 157 (966)
.+++.+ +...+.|+.+ ++.. ..|+|+++|.++.+.. +..++.++|++|||+|+||+| |..++. ..+.. .
T Consensus 212 ~~~~~~~l~~~~~~~~~-~~~~~~~g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~ 290 (377)
T 1foe_A 212 FGAVFDQLIAEQTGEKK-EVADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHR 290 (377)
T ss_dssp HHHHHHHHHTTCSSCSC-SSCCCCGGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTT
T ss_pred HHHHHHHHHHhcccccc-cccccCccceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccc
Confidence 777643 4455665543 3222 3588999999986631 111234699999999988875 432211 00100 0
Q ss_pred cCCCCCCCceEEeEEEeeccceEEeCCCCCCCcce-EEEEe-------CCCccEEEEeCCchhhhhhHHHHHHHhhhhhh
Q psy4663 158 APLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNA-FQIVP-------RCGSPVILIANSPEDKNNWMADLIMLNTKSMF 229 (966)
Q Consensus 158 ~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~na-F~I~~-------~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~~ 229 (966)
.+....++.|+|++.|+|+++.|.+..|++...|+ |+|.. ..+..|+|+|+|.++|+.||++|.++......
T Consensus 291 ~s~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~ 370 (377)
T 1foe_A 291 LSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHR 370 (377)
T ss_dssp TTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCceeEeeeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhh
Confidence 00011356899999999999999999988765554 88873 22345999999999999999999987766443
Q ss_pred H
Q psy4663 230 E 230 (966)
Q Consensus 230 ~ 230 (966)
.
T Consensus 371 ~ 371 (377)
T 1foe_A 371 R 371 (377)
T ss_dssp H
T ss_pred h
Confidence 3
No 21
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=244.23 Aligned_cols=179 Identities=16% Similarity=0.253 Sum_probs=141.6
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++.|.+||++|||||+||+|||++|+|+|+++ +|+++|++|+++|+.++.++|+.+ +
T Consensus 133 ~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~------------------~---- 190 (354)
T 2rgn_B 133 RLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMM------------------T---- 190 (354)
T ss_dssp SSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHH------------------H----
T ss_pred CCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------H----
Confidence 45689999999999999999999999999987 999999999999999999998776 1
Q ss_pred HHHHHHHhhhccCCccCCCCcccceEeeeccEEEeecCC----CCCccceEEEeccCceEEeecCCCCcccccccCCCCC
Q psy4663 88 IEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGK----KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGN 163 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~----~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~ 163 (966)
+..|+||++. +. ..|+|+++|.+..+.+.. +++.++||+|||+|+|||||+...... |..
T Consensus 191 -------~~~i~~~~~~-l~-~~~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-------~~~ 254 (354)
T 2rgn_B 191 -------LGRLRGFEGK-LT-AQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR-------GGT 254 (354)
T ss_dssp -------GGGCBSCCSC-ST-TSCCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------------
T ss_pred -------HHHHhCChhh-hh-hhccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCC-------CCC
Confidence 1348899984 43 368899999997653211 134569999999999999998542100 123
Q ss_pred CCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCC----CccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 164 QGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRC----GSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 164 ~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~----~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
...|.||+.|+|.++.|.+..+++ .++|.|...+ ...|+|+|+|.++|+.||++|.++..+.
T Consensus 255 ~~~y~~k~~i~l~~~~v~~~~~~~--~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 320 (354)
T 2rgn_B 255 QPGYVYKNSIKVSCLGLEGNLQGD--PCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ 320 (354)
T ss_dssp -CCEEEEEEEEGGGEEEEESGGGC--TTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEcceeeccceeeeeccCCC--CceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999875543 5789998642 2459999999999999999999977664
No 22
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.91 E-value=5.7e-24 Score=236.38 Aligned_cols=172 Identities=15% Similarity=0.284 Sum_probs=138.0
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIE 89 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l~ 89 (966)
+.|.+||++|||||+||+|||++|+|+|++ |+.++++|+++|+.++.++|+.+ +
T Consensus 133 l~L~~~Li~PvQRi~rY~LLL~~llk~t~~--~h~~l~~Al~~~~~v~~~~N~~~------------------~------ 186 (311)
T 1nty_A 133 NSISSYLIKPVQRITKYQLLLKELLTCCEE--GKGEIKDGLEVMLSVPKRANDAM------------------H------ 186 (311)
T ss_dssp SCHHHHHTHHHHHHHHHHHHHHHHHHTSCT--TCTTHHHHHHHHHHHHHHHHHHH------------------H------
T ss_pred CCHHHHhhhhHHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHHHHHHHHHH------------------H------
Confidence 578999999999999999999999999985 45679999999999999988776 1
Q ss_pred HHHHHhhhccCCccCCCCcccceEeeeccEEEeecC-CCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceE
Q psy4663 90 KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIG-KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168 (966)
Q Consensus 90 kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~-~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~ 168 (966)
+..|+||++ ++. ..|+|+++|.+..+.++ ..++.++||+|||+|+|||||+... +.....|.
T Consensus 187 -----~~~l~~~~~-~l~-~~g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~----------~~~~~~y~ 249 (311)
T 1nty_A 187 -----LSMLEGFDE-NIE-SQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKD----------SSGRSKYL 249 (311)
T ss_dssp -----HTTEESCCS-CSG-GGCCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEEC----------TTCCEEEE
T ss_pred -----HHHHhCCCC-ChH-hcCCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeecc----------CCCCceeE
Confidence 124778875 332 46899999999877432 1234579999999999999998432 11346899
Q ss_pred EeEEEeeccceEEeCCCCCCCcceEEEEeC----CCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 169 LKERFFIRRIEILDLPDSDDYKNAFQIVPR----CGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 169 ~k~~i~l~~~~I~d~~d~~~~~naF~I~~~----~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
||+.|+|.++.|++..+++ .++|.|... .+..|+|+|+|.++|+.|+++|.++...
T Consensus 250 ~k~~i~l~~~~v~e~~~~~--~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 250 YKSKLFTSELGVTEHVEGD--PCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp EEEEEEGGGEEEECCCTTC--TTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EeeeeeccceeeEEccCCC--CceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999877764 568999863 2345999999999999999999886654
No 23
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.89 E-value=7.5e-25 Score=259.33 Aligned_cols=194 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHH
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQA 87 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~ 87 (966)
++.|.+||++|||||+||+|||++|+|+|+.+ +|+++|++|++.|+.++.++|+.+ |+.|+
T Consensus 158 ~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~------------------~~~e~ 219 (510)
T 3jzy_A 158 GMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGV------------------REKEN 219 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Confidence 36799999999999999999999999999988 999999999999999999988877 66788
Q ss_pred HHHHHHHhhhccCCccC--CCC-------cccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCccccccc
Q psy4663 88 IEKTNELSKTVDGWTSV--DIG-------QCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTA 158 (966)
Q Consensus 88 l~kl~eiQ~~I~gw~g~--di~-------~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~ 158 (966)
.++|.+||+.|. |.|. .+. ...|+||++|.|.+. +++ ++||+|||+|+|||||....+...+...
T Consensus 220 ~~~l~~l~~~l~-~~g~~~~l~~~~~~~~~~~r~li~eG~l~~~--~~~---~~~~~fLF~d~Ll~~k~~~~~~~~~g~~ 293 (510)
T 3jzy_A 220 SDRLEWIQAHVQ-CEGLAEQLIFNSLTNCLGPRKLLHSGKLYKT--KSN---KELHGFLFNDFLLLTYMVKQFAVSSGSE 293 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcc-ccCccccccccccccccccceeEEeceEEEc--CCC---cEEEEEcccceeEEeeecccccccCCcc
Confidence 899999999996 5552 121 235899999999886 222 4999999999999999753320000000
Q ss_pred CCC--CCCCceE-EeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 159 PLG--GNQGEYR-LKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 159 ~~g--~~~~~y~-~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
... ..+..|+ ||+.|+|+++.|.+.+|..+.+|+|+|... +.+|+|+|.|.+||..||++|.+++.+.
T Consensus 294 ~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 294 KLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHI-DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccCcccccceeEEcCceehhheEEeccCCCCccccceeeecc-ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 000 0223565 489999999999999888888999999987 4579999999999999999997755543
No 24
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.85 E-value=1.6e-21 Score=187.80 Aligned_cols=119 Identities=20% Similarity=0.370 Sum_probs=101.6
Q ss_pred HHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeE
Q psy4663 92 NELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKE 171 (966)
Q Consensus 92 ~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~ 171 (966)
+-+|+.|+||+|.++.++|..+++.+.+.+. +..+..+|||||||+++||||+... +...|+|||
T Consensus 8 ~il~~~I~gWeG~~i~~lG~ii~~s~v~~~~--~~~~~~~eR~l~LF~~~Ll~~s~~~-------------~~~~f~~kg 72 (132)
T 1v61_A 8 QILSEPIQAWEGDDIKTLGNVIFMSQVVMQH--GACEEKEERYFLLFSSVLIMLSASP-------------RMSGFMYQG 72 (132)
T ss_dssp STTTSCCBTCCSSCSTTTCCCSCEEEEEBCC--SSSSCCCEEEEEECSSCEEEEECSS-------------SSSCCEEEE
T ss_pred HHHhhhhcccccCChhhcCCeEEEeeEEEEE--cccCcceEEEEEEcCCeEEEEEecC-------------CCceEEEEE
Confidence 3458899999999999988888886655444 2223457999999999999999843 234799999
Q ss_pred EEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 172 RFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 172 ~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+|+|++|.|++.+|+++.+|+|+|.+...++++|+|+|.|||++||++|.++..
T Consensus 73 klPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~ 126 (132)
T 1v61_A 73 KIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK 126 (132)
T ss_dssp EECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred EEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999778899999999999999999988654
No 25
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-18 Score=173.63 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=116.2
Q ss_pred cCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHHHHHHHHhhhccCCcc-----------
Q psy4663 36 LSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIEKTNELSKTVDGWTS----------- 103 (966)
Q Consensus 36 ~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l~kl~eiQ~~I~gw~g----------- 103 (966)
||+++ +|+++|++|+++++.++.++|+.+ |..|+.++|.+||++|++...
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~v------------------re~E~~~rL~eiq~~l~~~~~~~~~~~~~f~~ 63 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKV------------------ASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK 63 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGGH------------------HHHHHHHHHHHHHHSSCSSCCEECTTSCEECH
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 56666 999999999999877777766666 888999999999999997531
Q ss_pred CCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEe------EEEeecc
Q psy4663 104 VDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLK------ERFFIRR 177 (966)
Q Consensus 104 ~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k------~~i~l~~ 177 (966)
.|++ .|+|++||.|.+-. .+++.++||+|||||+||||++ .+++|.|+ ..+.|.+
T Consensus 64 ~dL~--~R~Ll~eG~L~~k~--~~~~~~d~~~fLf~D~Ll~~~~---------------~~~ky~~~~~~~~~pvi~L~~ 124 (185)
T 2lg1_A 64 EDLK--RKKLVRDGSVFLKN--AAGRLKEVQAVLLTDILVFLQE---------------KDQKYIFASLDQKSTVISLKK 124 (185)
T ss_dssp HHHT--TSCEEEEEEEEEEC--TTCCEEEEEEEEESSEEECCEE---------------ETTEEECCCCSSSCSEEESSS
T ss_pred cccC--CCceeeeceEEEec--cCCCeeeEEEEeecCEEEEEEe---------------cCCEEEEEcccCCCCeEeecc
Confidence 1454 49999999998332 2224579999999999999988 23578876 4588999
Q ss_pred ceEEeCCCCCCCcceEEEEeC--CCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 178 IEILDLPDSDDYKNAFQIVPR--CGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 178 ~~I~d~~d~~~~~naF~I~~~--~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
+.|.+..+. -+..|.|... +...|+|+|.|.+||+.||++|.+.+.+-
T Consensus 125 ~~vre~a~d--~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 125 LIVREVAHE--EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp CEEECCSSC--SSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEeccCCC--CCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 999886653 2223444433 23359999999999999999998866543
No 26
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=99.67 E-value=2e-16 Score=149.25 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=89.1
Q ss_pred ccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC
Q psy4663 109 CCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD 188 (966)
Q Consensus 109 ~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~ 188 (966)
.+|.||+||.+++++....+..+.+|||||||+||||++... ..++|+|..+++|+++.|+|+.|.+.
T Consensus 4 pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~------------~~~~~~~~~~~~L~~~~v~d~~d~~~ 71 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQ------------RRGMYRYNALYPLDRLAVVNVKDNPP 71 (113)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECC------------TTSCEEEEEEEETTTCEEEEECCBTT
T ss_pred CCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEecc------------CcccEEEEEEEEcccCEEEECCCCcc
Confidence 479999999999997544443456899999999999998532 22359999999999999999999989
Q ss_pred CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 189 YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 189 ~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
++|+|.|... +++++++|.|.+||.+||++|.++...
T Consensus 72 ~~n~f~i~~~-~~s~~~~aes~~eK~~Wl~~~~~a~~~ 108 (113)
T 1zc3_B 72 MKDMFKLLMF-PESRIFQAENAKIKREWLEVLEETKRA 108 (113)
T ss_dssp BSSEEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeC-CceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9999999976 668999999999999999999887544
No 27
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=170.50 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=150.5
Q ss_pred ccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCC------CCCChhHHHHHHHHhccchhhhhhhcccC-CHHHH
Q psy4663 439 ILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNK------EEKSPNLLKIIKHTTNFTRWLEKTIVETE-NLEER 511 (966)
Q Consensus 439 ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k------~~~spni~~~i~~fN~ls~wV~~~IL~~~-~~~~R 511 (966)
+++.|+.++|+|||.+|+++|+.....+-....+..... ...-.--..+|++||.++.||+.+||.+. +.++|
T Consensus 44 L~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~~eR 123 (333)
T 3t6a_A 44 FTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLEDR 123 (333)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCchHHH
Confidence 568999999999999999999776655533333322110 00000124689999999999999999975 48899
Q ss_pred HHHHHHHHHHHHHHh-hcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhccchhHHHHHHHHHcc-----
Q psy4663 512 IAIVSRAIEIMMVLN-DLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSI----- 585 (966)
Q Consensus 512 a~~i~kfI~IA~~c~-~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~----- 585 (966)
+.++.+||+||.+|+ .++|+++++||+.||++..|+||++||..|.+++.+..-.+++... -..+.|...
T Consensus 124 ~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yEk~Lk----P~~k~lneG~~~~~ 199 (333)
T 3t6a_A 124 AATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLK----PFSKLLHEGRESTC 199 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHHHTHH----HHHHHHHTTCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHHHHhh----HHHHHhhCCCCCCC
Confidence 999999999999999 8999999999999999999999999999999998885443333211 112222221
Q ss_pred -C--CCCccchhHHHhhhh---hhhhcCCCCCCCCCCc-cccHHHhhhHHHHHHHHHHhhcC----CCCCCCchHHHHHH
Q psy4663 586 -N--PPCVPFFGMYLTNIL---HIEEGNPDYLPNSNEE-LINFSKRRRVAEITGEIQQFQNS----PYCLSVEPRIRRFL 654 (966)
Q Consensus 586 -~--~P~IPflGv~L~DL~---~i~egnpd~i~~~~~~-lINf~K~r~i~~ii~~i~~~Q~~----~Y~~~~~~~i~~~l 654 (966)
. .-|||++--+++=+- ...+| .+..++.+.| -+-+.-+..--.++.....|+.. --.|..++++.+.|
T Consensus 200 ~~~~~~t~Phv~Pl~~llEr~~~~~e~-~~~we~~d~g~e~l~~hL~~aR~~a~~~~~y~~nA~~~L~g~~~~~el~Eif 278 (333)
T 3t6a_A 200 VPPNNVSVPLLMPLVTLMERQAVTFEG-TDMWEKNDQSCEIMLNHLATARFMAEAADSYRMNAERILAGFQPDEEMNEIC 278 (333)
T ss_dssp CCTTCCSBCCCHHHHHHHCTTCCCGGG-CSCCCGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTCCCCHHHHHHT
T ss_pred CCCCCccchhHHHHHHHHhcCCccccC-CCcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 368888865543221 11122 2222221111 11122111112223333344431 11477888877554
Q ss_pred Hh---------hCCCC-CCC--hhhhhhHHHHhhhhcccCCcCC
Q psy4663 655 EN---------LTPFD-NWK--EIDISNYLYEQSLKIEPRYAKL 686 (966)
Q Consensus 655 ~~---------l~~~~-~~~--e~~~~d~ly~lSl~iEPr~~~~ 686 (966)
.. -.... +.. .+.++.-|.-+|-++||...+.
T Consensus 279 ~TeFq~RlLwGsrGa~~~q~eRy~Kf~~VLtals~klep~~~~~ 322 (333)
T 3t6a_A 279 KTEFQMRLLWGSKGAQVNQTERYEKFNQILTALSRKLEPPPVKQ 322 (333)
T ss_dssp CHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHhhccCcCCCCHHHHHHHHHHHHHHHHHHhCCCcchH
Confidence 31 11111 111 2456778899999999987654
No 28
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=165.33 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=151.4
Q ss_pred ccccCHHHHHHhhhHHHHHHhccCCccccccccccCCCCC--CCCh----hHHHHHHHHhccchhhhhhhcccC-CHHHH
Q psy4663 439 ILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKE--EKSP----NLLKIIKHTTNFTRWLEKTIVETE-NLEER 511 (966)
Q Consensus 439 ll~~~p~eiA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~--~~sp----ni~~~i~~fN~ls~wV~~~IL~~~-~~~~R 511 (966)
+++.++.++|+|||.+|+++|+.....+-....+.....- ..-| --..+|++||.+..||+.+||.+. +.++|
T Consensus 45 L~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~~~R 124 (331)
T 3t6g_A 45 LAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSAEER 124 (331)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCHHHH
Confidence 5689999999999999999998866544443333221100 0001 124689999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHh-hcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHHHhccchhHHHHHHHHHccC----
Q psy4663 512 IAIVSRAIEIMMVLN-DLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSIN---- 586 (966)
Q Consensus 512 a~~i~kfI~IA~~c~-~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L~~l~~~n~~~yR~~l~~~~---- 586 (966)
+.++.+||+||.+|+ .++|+++++||+.||++..|.||++||..|..++.+..-.+++. -+-..+.|..+.
T Consensus 125 a~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~Ai~yEk~----LkP~~k~lneg~~~~~ 200 (331)
T 3t6g_A 125 AALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKK----LKPFLKSLNEGKEGPP 200 (331)
T ss_dssp HHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHHHHHHHHT----HHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHH----hhHHHHHHhCCCCCCC
Confidence 999999999999999 99999999999999999999999999999999988774444332 112223344433
Q ss_pred --CCCccchhHHHhhhhh---hhhcCCCCCCCCCCcc-ccHHHhhhHHHHHHHHHHhhcC----CCCCCCchHHHHHHHh
Q psy4663 587 --PPCVPFFGMYLTNILH---IEEGNPDYLPNSNEEL-INFSKRRRVAEITGEIQQFQNS----PYCLSVEPRIRRFLEN 656 (966)
Q Consensus 587 --~P~IPflGv~L~DL~~---i~egnpd~i~~~~~~l-INf~K~r~i~~ii~~i~~~Q~~----~Y~~~~~~~i~~~l~~ 656 (966)
.-|||++.-+++=+-. ..+| .+..++.+.+. +-+.-+..--.++.....|+.. -=.|..++++.++|..
T Consensus 201 ~~~~~~Phl~Pl~~llE~~~~~~~~-~~~we~~d~~~e~l~~hL~~aR~~a~~~~~y~~nA~~~L~gf~~~~el~E~f~T 279 (331)
T 3t6g_A 201 LSNTTFPHVLPLITLLESDSAPPEG-PEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEVKLQGFQARPELLEVFST 279 (331)
T ss_dssp GGGCSBCCCHHHHHHTCC---------------CCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTTCCCCHHHHHHTCH
T ss_pred CCCCccchHHHHHHHHcCCCccccc-cCcccCcchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3589988765442210 0011 12122211121 1122111111222333344431 1135788888776642
Q ss_pred h---C-CCC------CCC--hhhhhhHHHHhhhhcccCC
Q psy4663 657 L---T-PFD------NWK--EIDISNYLYEQSLKIEPRY 683 (966)
Q Consensus 657 l---~-~~~------~~~--e~~~~d~ly~lSl~iEPr~ 683 (966)
- . .++ +.. .+.++.-|.-+|-++||..
T Consensus 280 eFq~RlLWGsrGa~~~q~eRy~Kf~~VLtals~klep~~ 318 (331)
T 3t6g_A 280 EFQMRLLWGSQGASSSQARRYEKFDKVLTALSHKLEPAV 318 (331)
T ss_dssp HHHHHHHHCTTGGGSCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 0 011 111 2456777888999999973
No 29
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=135.82 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=85.0
Q ss_pred CCCcccceEeeeccEEEeecC---CCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEE
Q psy4663 105 DIGQCCNEFFREDTLLKLNIG---KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL 181 (966)
Q Consensus 105 di~~~~~~li~eG~l~ki~~~---~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~ 181 (966)
++..+.|+||+.+.|..|..- ++++.++||||||||+|||||...++. .++.|++++.++|.+|.|.
T Consensus 5 ~L~~phRrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk----------~~~~Y~vr~~~~L~gm~V~ 74 (140)
T 3qwm_A 5 VLSLPHRRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKK----------NSVTYSFRQSFSLYGMQVL 74 (140)
T ss_dssp -----CCCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC-------------CCCCCCCEEEECCTTEEEE
T ss_pred eeccCCceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCC----------CCCceEEEEEeeecceEEE
Confidence 466678999999999877533 344578999999999999998643321 3568999999999999999
Q ss_pred eCCCCCCCcceEEEEeCC-C----ccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 182 DLPDSDDYKNAFQIVPRC-G----SPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 182 d~~d~~~~~naF~I~~~~-~----~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..++. .+.|+|.|.+.. + ..++|.|+|.+|+.+||++|...+
T Consensus 75 ~~e~e-~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI 121 (140)
T 3qwm_A 75 LFENQ-YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESI 121 (140)
T ss_dssp EECCS-SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCC-CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 88766 589999999753 2 339999999999999999997754
No 30
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=99.47 E-value=1.7e-14 Score=136.72 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=83.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-CCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-SDD 188 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-~~~ 188 (966)
.|+|+++|++..+... ++.++||+|||+++||+||++.+ ..+..|.||+.|.|.++.|++..+ ++.
T Consensus 7 ~G~Ll~q~~f~V~~~~--~k~~eR~vFLFe~~ilf~K~~~~-----------~~~~~Y~~K~~ikl~~~~lte~~~~~d~ 73 (119)
T 1fho_A 7 LGRIIRHDAFQVWEGD--EPPKLRYVFLFRNKIMFTEQDAS-----------TSPPSYTHYSSIRLDKYNIRQHTTDEDT 73 (119)
T ss_dssp CCCSSEEEEEEECSTT--CSCEEEEEEEETTEEEEEEECCS-----------SSSCCCSSCCEEESSSCEEEEECTTCCE
T ss_pred cCCccccCceEEEeCC--CCcceEEEEEecCcEEEEEEecC-----------CCCCcEEEeeEEeeceeEEEecCCCCCC
Confidence 5799999999998532 45579999999999999998621 245789999999999999999876 654
Q ss_pred CcceEEEEeCCCc-cEEE--EeCCch-hhhhhHHHHHHHhhhh
Q psy4663 189 YKNAFQIVPRCGS-PVIL--IANSPE-DKNNWMADLIMLNTKS 227 (966)
Q Consensus 189 ~~naF~I~~~~~~-~~~l--~aks~e-eK~~W~~~L~~l~~~~ 227 (966)
..|+|+..+.. .|++ +|.|.| .|+.|+++|.+++.+.
T Consensus 74 --~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~~ 114 (119)
T 1fho_A 74 --IVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKY 114 (119)
T ss_dssp --EEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHH
T ss_pred --cEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHHH
Confidence 45999877533 3888 999999 9999999997755443
No 31
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.04 E-value=1.1e-10 Score=127.32 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=60.8
Q ss_pred hhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhHHHHH
Q psy4663 10 YYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAI 88 (966)
Q Consensus 10 ~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~~~~k~~~~~~~~~~~~~r~~e~l 88 (966)
+.|.+||++|||||+||+|||++|+|+|+.+ +|+.+|++|+..|+.++.++|+.+ |+.|+.
T Consensus 214 l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~------------------r~~e~~ 275 (283)
T 3jv3_A 214 MPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGV------------------REKENS 275 (283)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHG
T ss_pred CCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH------------------HHHhHH
Confidence 5689999999999999999999999999887 999999999999999999998888 888999
Q ss_pred HHHHHHhh
Q psy4663 89 EKTNELSK 96 (966)
Q Consensus 89 ~kl~eiQ~ 96 (966)
++|.+||+
T Consensus 276 ~~l~~iQs 283 (283)
T 3jv3_A 276 DRLEWIQA 283 (283)
T ss_dssp GGC-----
T ss_pred HHHHHhhC
Confidence 99999985
No 32
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=98.79 E-value=3.5e-09 Score=110.44 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=53.7
Q ss_pred HhhccccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHHHHhh
Q psy4663 9 KYYLPKLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLSDSLQ 65 (966)
Q Consensus 9 k~~L~~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~~~~~ 65 (966)
++.|.+||++|||||+||+|||++|+|+|+++ +|+.++++|++.|+.++.++|+.+.
T Consensus 138 ~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~r 195 (209)
T 1by1_A 138 ILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRK 195 (209)
T ss_dssp TTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999988 9999999999999999999999873
No 33
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.53 E-value=3.2e-07 Score=84.56 Aligned_cols=97 Identities=16% Similarity=0.294 Sum_probs=73.1
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccC--ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDG--LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~--~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~ 187 (966)
.+..+++|.|.|... ..+.=+.|||.|.++ .|.|.|... ....++.|+|.++.|....+..
T Consensus 4 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yyk~~~----------------~~~~~g~i~L~~~~v~~~~~~~ 66 (109)
T 2i5f_A 4 TGVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAG----------------AEDPLGAIHLRGCVVTSVESNS 66 (109)
T ss_dssp CCCEEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEECTTS----------------CSSCSEEEECTTCEEEEECC--
T ss_pred cCceeEEEEEEEcCC-CCCCceEEEEEEeCCCcEEEEECCCC----------------CCCccEEEECCCCEEEEccCCc
Confidence 357899999999732 222235899999987 888887531 2345678999998887665432
Q ss_pred -----CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 188 -----DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 188 -----~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
.-.|+|+|...++..|.|+|.|.+|++.||++|..+
T Consensus 67 ~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~ 107 (109)
T 2i5f_A 67 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107 (109)
T ss_dssp ------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 257899999886667999999999999999999765
No 34
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.49 E-value=4.5e-07 Score=84.40 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=74.3
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEe-CCCCCCCc
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD-LPDSDDYK 190 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d-~~d~~~~~ 190 (966)
..+++|.|.|.....+. =+.|||.|.++.|.|.|... .-..++.|+|.++.+.. ..+...-.
T Consensus 4 ~~~~~G~L~K~g~~~~~-Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~~~~~~~~~~~~~ 66 (113)
T 1pls_A 4 KRIREGYLVKKGSVFNT-WKPMWVVLLEDGIEFYKKKS----------------DNSPKGMIPLKGSTLTSPCQDFGKRM 66 (113)
T ss_dssp CCSEEEEEEEESSSSSC-CEEEEEEEETTEEEEESSTT----------------CSSCSEEEESSSCCEESSCCSSCCSS
T ss_pred CCcEEEEEEEeCCCCCC-ceEEEEEEECCEEEEEeCCC----------------CCCcceEEEcCCCEEEEecCCCCCCc
Confidence 45689999987322232 35899999999999998632 13456789999998876 33444567
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
|+|+|...+++.|.|+|.|.+|+..||++|..+..
T Consensus 67 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~ 101 (113)
T 1pls_A 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101 (113)
T ss_dssp SEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 89999988667899999999999999999977544
No 35
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.47 E-value=6.6e-07 Score=81.99 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=75.2
Q ss_pred eEeeeccEEEeecCCC---CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC---C
Q psy4663 112 EFFREDTLLKLNIGKK---TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP---D 185 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~---~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~---d 185 (966)
..+++|.|.|...+.+ +.=+.|||.|.++.|.|.+... ....++.|+|.++.+.... +
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~~ 65 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK----------------SKQPKGTFLIKGYSVRMAPHLRR 65 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT----------------CSSCSEEEECTTCEEEECGGGCS
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCC----------------CCCCCEEEEecceEEEeCCcccc
Confidence 5789999998854321 2235899999999999998632 1235678999999987653 2
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
...-.|+|+|...++..|.|+|.|.+|+..||++|..+..
T Consensus 66 ~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 66 DSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 2235789999988667899999999999999999987654
No 36
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9.8e-07 Score=82.35 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=74.8
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC--CCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP--DSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~--d~~ 187 (966)
....+++|.|.|...+..+.=+.|||.|.++.|.|.|... ....++.|+|.++.|.... +..
T Consensus 8 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~~~ 71 (117)
T 2d9y_A 8 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----------------EESILGSIPLLSFRVAAVQPSDNI 71 (117)
T ss_dssp SCCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTT----------------CCSCCEEEECSSCEEEECCTTTTC
T ss_pred CCCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCC----------------CCCcCCEEEeCCeEEEEcCccccC
Confidence 3567899999988422233335899999999999997632 1245778999998887664 334
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
..+|+|+|...++..|.|+|.|.+|++.||++|..+
T Consensus 72 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 72 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp CCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 567899998776778999999999999999999663
No 37
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=9.4e-07 Score=82.22 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=73.9
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccc-eEEeCCCCCCC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRI-EILDLPDSDDY 189 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~-~I~d~~d~~~~ 189 (966)
+..+++|.|.|.....+ .-+.|||.|.++.|.|.|... ....++.|+|.++ .|....+.+.-
T Consensus 6 ~~~~~~G~L~K~~~~~~-~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~~v~~~~~~~~~ 68 (115)
T 2dn6_A 6 SGVLKQGYMMKKGHRRK-NWTERWFVLKPNIISYYVSED----------------LKDKKGDILLDENCCVESLPDKDGK 68 (115)
T ss_dssp CSCSEEEEEEEECTTSS-CEEEEEEEECSSCEEEESSTT----------------CSSEEEEECCCTTCEEEEECCCTTC
T ss_pred CCceEEEEEEecCCCCC-CcEEeEEEEECCEEEEeCCCC----------------CcccCcEEEecCcEEEEECCCCCCC
Confidence 46788999998743222 235899999999999998631 1345888999975 45555555556
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.+.|+|... ++.|.|+|.|.+|++.||++|..+..
T Consensus 69 ~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~ai~~~~~ 103 (115)
T 2dn6_A 69 KCLFLVKCF-DKTFEISASDKKKKQEWIQAIHSTIH 103 (115)
T ss_dssp CSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeC-CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 789999876 56799999999999999999977554
No 38
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.43 E-value=8.4e-07 Score=84.59 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=75.1
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccC--ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDG--LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~--~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~ 187 (966)
.+..+++|.|.|.... .+.=+.|||.|.++ .|.|.|... ....++.|+|.++.|....+..
T Consensus 15 ~~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~ 77 (129)
T 1x05_A 15 RGVIIKQGCLLKQGHR-RKNWKVRKFILREDPAYLHYYDPAG----------------AEDPLGAIHLRGCVVTSVESNS 77 (129)
T ss_dssp CSEEEEEEEEEECCSS-CCCCEEEEEEEEETTTEEEEECSSC----------------CSSCSEEEECTTCEEEECCCCC
T ss_pred cCCceEEEEEEecCCC-CCCCeeEEEEEeCCCCEEEEECCCC----------------CCcceeEEEccCCEEEEccCCc
Confidence 4688999999997322 22235899999987 788887531 2345778999999888765542
Q ss_pred -----CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 188 -----DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 188 -----~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
+-.|+|+|...++..|.|+|.|.+|++.||++|..+.
T Consensus 78 ~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 119 (129)
T 1x05_A 78 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 119 (129)
T ss_dssp CSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 2578999998866679999999999999999997754
No 39
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.43 E-value=9.2e-07 Score=82.48 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=74.8
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC--CC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS--DD 188 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~--~~ 188 (966)
...+++|.|.|..... +.=+.|||.|.++.|.|.|... ....++.|+|.++.|.+..+. ..
T Consensus 6 ~~~~~~G~L~K~g~~~-~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~~~~ 68 (118)
T 1v89_A 6 SGPIKMGWLKKQRSIV-KNWQQRYFVLRAQQLYYYKDEE----------------DTKPQGCMYLPGCTIKEIATNPEEA 68 (118)
T ss_dssp SCEEEEEEEEEECSSS-SCEEEEEEEEETTEEEEESSSS----------------CCSCSEEECSTTEEEEEECCCSSCC
T ss_pred CCCcEEEEEEecCCCC-CCccEEEEEEECCEEEEEeCCC----------------CCCceEEEECCCCEEEEcCcCcccC
Confidence 4678999999883222 2235899999999999998632 134567899999988866532 33
Q ss_pred CcceEEEEeC-------CCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 189 YKNAFQIVPR-------CGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 189 ~~naF~I~~~-------~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
-+|+|+|... .+..|.|+|.|.+|+..||++|..+..
T Consensus 69 ~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 69 GKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp CCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence 5789999873 466799999999999999999987654
No 40
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.42 E-value=3.8e-07 Score=86.88 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=74.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEecc--CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFD--GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS- 186 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd--~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~- 186 (966)
.+..+++|.|.|.... .+.=+.|||.|.+ ..|.|.|... .....++.|+|.++.|....+.
T Consensus 15 ~~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~d~~~L~yy~~~~---------------~~~~~~g~i~L~~~~v~~~~~~~ 78 (129)
T 1x1g_A 15 SGTVVKQGYLAKQGHK-RKNWKVRRFVLRKDPAFLHYYDPSK---------------EENRPVGGFSLRGSLVSALEDNG 78 (129)
T ss_dssp CSEEEEEEEEEEECSS-SSSEEEEEEEEEESSCEEEEECSSS---------------CCSSCSCCEESTTCCCEECCSSS
T ss_pred CCCEEEEEEEEEECCC-CCCeeeEEEEEeCCCCeEEEeCCCC---------------cCCccceEEECcCCEEEEeCCCC
Confidence 4689999999998322 2223589999994 4788887631 1124466788998877766543
Q ss_pred --CC-----CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 187 --DD-----YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 187 --~~-----~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+. -.|+|+|...++..|.|+|.|.+|++.||++|..+..+
T Consensus 79 ~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 79 VPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred CcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 11 46899999886667999999999999999999886544
No 41
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.39 E-value=1.9e-06 Score=81.82 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=76.2
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC--C
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS--D 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~--~ 187 (966)
....+++|.|.|...+..+.-+.|||.|-++.|.|.|... ....++.|+|.++.|....+. .
T Consensus 18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~~~ 81 (128)
T 2dkp_A 18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK----------------EEGILGSILLPSFQIALLTSEDHI 81 (128)
T ss_dssp TSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----------------CCSEEEEECGGGSEEEECCGGGCC
T ss_pred CCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC----------------CcccceEEEcCceEEEEcCCcccC
Confidence 4578899999987431223336899999999999998631 134688899999988876533 2
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
.-+|+|+|...++..|.|+|.|.+|.+.||++|..+
T Consensus 82 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 117 (128)
T 2dkp_A 82 NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117 (128)
T ss_dssp SSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 457899999886678999999999999999999663
No 42
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.37 E-value=1.2e-06 Score=87.79 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=71.5
Q ss_pred ceEeeeccEEEeecCCCC----CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC-C
Q psy4663 111 NEFFREDTLLKLNIGKKT----ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP-D 185 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~----~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~-d 185 (966)
..-|+||.|.|-..+.++ .=+.|||.|-++.|.|.|... ..-..+|.|+|.++.++... +
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~---------------~~~~~~G~I~L~~~~~v~~~~~ 77 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRA---------------EKKYRKGFIDVSKIKCVEIVKN 77 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCS---------------SSCCCCCEEEGGGCCEEEECCC
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccC---------------cccccccEEEEeeeEEEEeccc
Confidence 478899999987432221 115899999999999998632 11234678889887655432 2
Q ss_pred C-----CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 186 S-----DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 186 ~-----~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
. ...++.|+|... +..|.|+|.|++|+++||++|.++..
T Consensus 78 ~~~~~~~~~~~~f~i~t~-~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 78 DDGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp CSSSCCSSSCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cccCcccccceeEEEecC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 1 234688999887 56799999999999999999977443
No 43
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.37 E-value=6.4e-07 Score=81.90 Aligned_cols=90 Identities=14% Similarity=0.099 Sum_probs=67.8
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEE
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~ 194 (966)
+||.|.|.....+ .-+.|||.|.++.|.|.|.... .....+|.|+|.++.|....+. .+.|+
T Consensus 1 ~eG~L~K~g~~~k-~Wk~R~fvL~~~~L~Yy~~~~~--------------~~~~~~g~i~L~~~~v~~~~~~---~~~F~ 62 (103)
T 3rcp_A 1 MEGVLYKWTNYLT-GWQPRWFVLDNGILSYYDSQDD--------------VCKGSKGSIKMAVCEIKVHSAD---NTRME 62 (103)
T ss_dssp CEEEEEEECCTTT-CEEEEEEEEETTEEEEESSCC-----------------CCCSCEEEGGGCEEECCTTC---SSEEE
T ss_pred CceEEEEccCCCC-CeeceEEEEECCEEEEEecCCc--------------ccCCcccEEEeeeeEEEEcCCC---CceEE
Confidence 5788888742223 3358999999999999987421 0123468899998888754332 67899
Q ss_pred EEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 195 IVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 195 I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
|...++..|.|+|.|.+|++.||++|..
T Consensus 63 i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 90 (103)
T 3rcp_A 63 LIIPGEQHFYMKAVNAAERQRWLVALGS 90 (103)
T ss_dssp EEETTTEEEEEECSSHHHHHHHHHHHHT
T ss_pred EEeCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 9987677899999999999999999965
No 44
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.36 E-value=2.4e-06 Score=80.54 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=76.7
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC--C
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS--D 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~--~ 187 (966)
....+++|.|.|...+..+.=+.|||.|-++.|.|.|... ....++.|+|.++.|....+. .
T Consensus 8 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~----------------~~~~~g~i~l~~~~v~~~~~~~~~ 71 (123)
T 1upq_A 8 NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR----------------EESVLGSVLLPSYNIRPDGPGAPR 71 (123)
T ss_dssp TSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT----------------CCSCCEEEEGGGCEEEECCSSCTT
T ss_pred CCCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCC----------------CcccceEEECCCCEEEECCCCccC
Confidence 3468899999988421222225899999999999987632 134578899999998876542 3
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
...|+|+|...++..|.|+|.|.+|+..||.+|..+..
T Consensus 72 ~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 72 GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp SSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 46889999888667899999999999999999977544
No 45
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=80.86 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=74.8
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC--CCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP--DSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~--d~~ 187 (966)
....+++|.|.|...+..+.=+.|||.|-++.|.|.|... ....++.|+|.++.|.... +..
T Consensus 19 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~~~~ 82 (122)
T 2yry_A 19 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----------------EESILGSIPLLSFRVAAVQPSDNI 82 (122)
T ss_dssp TCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----------------CCSCCEEEESTTCCCEECCTTCSC
T ss_pred CCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCC----------------CCCcccEEEcCCCEEEEcCccccC
Confidence 4578999999987422233335899999999999987632 1245678999998877653 334
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
.-+|+|+|...++..|.|+|.|.+|++.||++|..+
T Consensus 83 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 118 (122)
T 2yry_A 83 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118 (122)
T ss_dssp SSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 567899998776778999999999999999999764
No 46
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.34 E-value=1.2e-06 Score=83.12 Aligned_cols=99 Identities=15% Similarity=0.025 Sum_probs=75.5
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
.+..+++|.|.|... ..+.-+.|||.|.++.|.|.|... ....++.|+|.++.++...+....
T Consensus 15 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~~v~~~~~~~~ 77 (126)
T 1fao_A 15 PSLGTKEGYLTKQGG-LVKTWKTRWFTLHRNELKYFKDQM----------------SPEPIRILDLTECSAVQFDYSQER 77 (126)
T ss_dssp CCTTCEEEEEEEECS-SSCCEEEEEEEEETTEEEEESSTT----------------CSSCSEEEEGGGCCEEEEECSSSS
T ss_pred CCCccEEEEEEEcCC-CCCCcccEEEEEECCEEEEeCCCC----------------CCCceeEEEccceEEEEecccCCC
Confidence 345678999998732 222235899999999999998632 134567899999886655555556
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.|+|+|... ++.|.|+|.|.+|+..||++|..+..+
T Consensus 78 ~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 78 VNCFCLVFP-FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp SSEEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 789999976 667999999999999999999876554
No 47
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.33 E-value=2e-06 Score=86.56 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=73.7
Q ss_pred eEeeeccEEEeecCCC----CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC---
Q psy4663 112 EFFREDTLLKLNIGKK----TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP--- 184 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~----~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~--- 184 (966)
++|+||.|.|-..+.+ +.=+.|||.|-++.|.|-|.... .......+|.|+|.++.+++..
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~------------~~~~~~~~G~I~L~~~~~ve~~~~~ 69 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFE------------RGRRGSKKGSIDVEKITCVETVVPE 69 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETT------------TTEEEEEEEEEEGGGEEEEEECCCC
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCc------------cCCCCceeeEEECcceEEEEeccCC
Confidence 4689999999742221 22358999999999999996210 1235788999999998755433
Q ss_pred CCCC--Cc---------------------ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 185 DSDD--YK---------------------NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 185 d~~~--~~---------------------naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+... .+ |+|+|... +..|.|+|.|.+|+++||++|..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~-~rt~yl~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 70 KNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYD-EGPLYVFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp SSCCGGGCC---------CCTTHHHHCCCEEEEEEET-TCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred CCcchhcccccccCcccccccccccccccccEEEEeC-CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 2211 12 89999987 46799999999999999999977543
No 48
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.31 E-value=1.9e-06 Score=79.59 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=73.6
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcc
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKN 191 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~n 191 (966)
..+++|.|.|...+.+.. +.|||.|-++.|.|-|.... ..-++.|+|.++.+....+...-+|
T Consensus 7 ~~~~~G~L~K~~~~~~~W-k~RwfvL~~~~L~yyk~~~~----------------~~~~~~i~L~~~~~~~~~~~~~~~~ 69 (109)
T 1wgq_A 7 GSTMSGYLYRSKGSKKPW-KHLWFVIKNKVLYTYAASED----------------VAALESQPLLGFTVTLVKDENSESK 69 (109)
T ss_dssp SCSCEEEEEEESSTTSCC-EEEEEEEETTEEEEESCTTC----------------SSCSEEEECSSEEEEECCCSSCSSS
T ss_pred CCeEEEEEEeCCCCCCCc-eeEEEEEeCCEEEEECCCCc----------------CccCceEECCCCEEEECCCCCCCCc
Confidence 456789998873222333 58999999999999876321 2345789999999888776555678
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
+|+|...++..|.|+|.|.+|...||++|..+.
T Consensus 70 ~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 70 VFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 999998756669999999999999999997754
No 49
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=98.28 E-value=2e-06 Score=77.33 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=67.0
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceE
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAF 193 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF 193 (966)
.++|.|.|.....+ .=+.|||.|-++.|.|.+.... .....++.+.|.++.+..... -.+.|
T Consensus 2 ~k~G~L~K~g~~~k-~WkkR~FvL~~~~L~Yy~~~~~--------------~~~~~~~~i~l~~~~~~~~~~---~~~~F 63 (94)
T 2rsg_A 2 ERCGVLSKWTNYIH-GWQDRWVVLKNNALSYYKSEDE--------------TEYGCRGSICLSKAVITPHDF---DECRF 63 (94)
T ss_dssp CEEEEEEEESSSTT-CEEEEEEEEETTEEEEESSTTG--------------GGTCCSEEEETTTCEEEECSS---CSSEE
T ss_pred CEEEEEEEeCCCCC-CceEEEEEEECCEEEEEEeccc--------------ccccceeeEecceeeeecCcc---cceeE
Confidence 47888888732222 2358999999999999876321 122345678888888765433 35789
Q ss_pred EEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 194 QIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 194 ~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
+|... +..|.|+|.|.+|+++||++|.+.
T Consensus 64 ~i~~~-~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 64 DISVN-DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEET-TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred EEEeC-CeEEEEECCCHHHHHHHHHHHHhh
Confidence 99887 567999999999999999999653
No 50
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.28 E-value=2.8e-06 Score=80.33 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=74.0
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
..-+++|.|.|.....+. =+.|||.|.++.|.|.|... .-..++.|+|.++.|....+. .-+
T Consensus 3 ~~~~~~G~L~K~g~~~~~-Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~L~~~~v~~~~~~-~~~ 64 (127)
T 1fgy_A 3 FNPDREGWLLKLGGRVKT-WKRRWFILTDNCLYYFEYTT----------------DKEPRGIIPLENLSIREVLDP-RKP 64 (127)
T ss_dssp SSCSEEEEEEEECSSSCC-EEEEEEEEETTEEEEESSTT----------------CSSCSEEEECTTCEEEEECCS-SCS
T ss_pred CCCceEeEEEEECCCCCC-eEEEEEEEECCEEEEeCCCC----------------CCCcceEEECCceEEEEccCC-CCC
Confidence 345789999988322222 35899999999999998632 123567899999988877654 467
Q ss_pred ceEEEEeCCC---------------------ccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 191 NAFQIVPRCG---------------------SPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 191 naF~I~~~~~---------------------~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
++|+|...++ ..|.|+|.|.+|++.||++|..+..+
T Consensus 65 ~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 121 (127)
T 1fgy_A 65 NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR 121 (127)
T ss_dssp SEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 8999986643 35999999999999999999876543
No 51
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.28 E-value=3e-06 Score=82.95 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=76.0
Q ss_pred ceEeeeccEEEeecCCC---CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC--
Q psy4663 111 NEFFREDTLLKLNIGKK---TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-- 185 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~---~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-- 185 (966)
+..+++|.|.|...+.+ +.-+.|||.|-++.|.|.|... ....++.|.|.++.|....+
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~----------------~~~~~g~i~L~~~~v~~~~~~~ 78 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK----------------DKQQKGEFAIDGYDVRMNNTLR 78 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT----------------CSSCSEEEECTTCEEEECTTSC
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCC----------------CcccceEEEcCCcEEEECCCcc
Confidence 57889999998843222 2235899999999999997632 13457789999999887653
Q ss_pred -CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 186 -SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 186 -~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
...-.|+|+|...+++.|.|+|.|.+|+..||.+|..+..
T Consensus 79 ~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 79 KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp SSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred cCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 2234689999988667899999999999999999977544
No 52
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.26 E-value=2.7e-06 Score=79.41 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=70.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
....+++|.|.|......+.-+.|||.|.++.|.|.|.... -..++.|+|.++..++..+
T Consensus 5 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~~v~~~~---- 64 (115)
T 2cod_A 5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKE----------------MYSKGIIPLSAISTVRVQG---- 64 (115)
T ss_dssp CSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCC----------------SSCCCEEETTTEEEEEEET----
T ss_pred CCCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCC----------------cccCCEEECCcceEEEeCC----
Confidence 35678999999874312233358999999999999987421 1346678888775443332
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.|+|+|... ++.|.|.|.|.+|++.||++|..+..
T Consensus 65 ~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~~~ 99 (115)
T 2cod_A 65 DNKFEVVTT-QRTFVFRVEKEEERNDWISILLNALK 99 (115)
T ss_dssp TTEEEEEES-SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 589999955 66799999999999999999987553
No 53
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.8e-06 Score=81.52 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred eEeeeccEEEeecCCCCCccceEEEec--cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLF--DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLF--d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
..+++|.|.|.....+. =+.|||.|- ++.|.|.|.... .....++.|+|.++.|...+ .-
T Consensus 7 ~~~~~G~L~K~~~~~~~-Wk~R~fvL~~~~~~L~Yyk~~~~--------------~~~~~~g~I~L~~~~v~~~~---~~ 68 (120)
T 2d9x_A 7 GENVYGYLMKYTNLVTG-WQYRFFVLNNEAGLLEYFVNEQS--------------RNQKPRGTLQLAGAVISPSD---ED 68 (120)
T ss_dssp CCCCEEEEEEEEETTTE-EEEEEEEECTTTCEEEEESSGGG--------------SSSCCSEEEECTTCCEECCS---SS
T ss_pred CCcEEEEEEecCCCCCC-ceEEEEEEECCCCEEEEEecCcc--------------cCCCccceEEcceEEEEecC---CC
Confidence 45678888887432232 258999998 568888876311 12356788999998875432 23
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
.++|+|...+++.|.|+|.|.+|++.||++|..+....
T Consensus 69 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 69 SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp SSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 58999998866789999999999999999998765443
No 54
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.19 E-value=3.9e-06 Score=82.26 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=76.5
Q ss_pred cceEeeeccEEEeecC-----CCCCccceEEEeccC-----ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccce
Q psy4663 110 CNEFFREDTLLKLNIG-----KKTESTERVCFLFDG-----LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIE 179 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~-----~~~~~~eR~~FLFd~-----~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~ 179 (966)
.+..+++|.|.|...+ ..+.-+.|||.|.++ .|.|.|.... .-..++.|+|.++.
T Consensus 15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~---------------~~~~~g~I~L~~~~ 79 (150)
T 1wg7_A 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI---------------SKEPKGSIFLDSCM 79 (150)
T ss_dssp SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC---------------SSCCSEEECTTTCC
T ss_pred CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCC---------------CCCcCcEEecccCE
Confidence 3678899999987321 112225899999987 8999876321 13456789999988
Q ss_pred EEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 180 ILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 180 I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
++...+ ..-+|+|+|...+++.|.|+|.|.+|...||.+|..+....
T Consensus 80 ~~~~~~-~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 80 GVVQNN-KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp EECCCC-SSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEecCC-CCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 875543 35678999999866789999999999999999998866543
No 55
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=98.19 E-value=9.5e-06 Score=76.42 Aligned_cols=94 Identities=20% Similarity=0.224 Sum_probs=74.8
Q ss_pred EeeeccEEEeecCCCC-CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-CCCc
Q psy4663 113 FFREDTLLKLNIGKKT-ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-DDYK 190 (966)
Q Consensus 113 li~eG~l~ki~~~~~~-~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~ 190 (966)
.|++|-|.|..+|.-+ .-++|+|.|=++.|.|-|-.. +=.-++.|+|.++.|.+++++ ..-+
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~----------------eke~~G~IpL~~~~vr~v~~~~~~rk 75 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----------------EKEKKYMLSVDNLKLRDVEKGFMSSK 75 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTT----------------CSCEEEEEECTTEEEEECCSCSSSSC
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCc----------------ccccceEEECCCceEeccCCCCCCCc
Confidence 7999999985333333 256999999999999998642 224567899999999998875 2468
Q ss_pred ceEEEEeCCCc-------cEEEEeCCchhhhhhHHHHHH
Q psy4663 191 NAFQIVPRCGS-------PVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 191 naF~I~~~~~~-------~~~l~aks~eeK~~W~~~L~~ 222 (966)
|.|+|.+.+++ .|.|.|.|.||+..|+++|.+
T Consensus 76 ~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r 114 (125)
T 1dyn_A 76 HIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 114 (125)
T ss_dssp EEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence 99999987643 699999999999999999855
No 56
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.18 E-value=3.4e-06 Score=78.68 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=69.6
Q ss_pred eEeeeccEEEeecCCCCCccceEEEec--cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC----
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLF--DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD---- 185 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLF--d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d---- 185 (966)
..+++|.|.|.....+ .=+.|||.|. ++.|.|.|.... -..++.|+|.++.++...+
T Consensus 7 ~~~~~G~L~K~g~~~~-~Wk~R~fvL~~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~~~ 69 (117)
T 1v5u_A 7 GRSYEGILYKKGAFMK-PWKARWFVLDKTKHQLRYYDHRMD----------------TECKGVIDLAEVEAVAPGTPTIG 69 (117)
T ss_dssp SSSEEEEEEECCCSSS-CCEEEEEEEETTTTEEEEESSSSC----------------SSCCCEEEGGGEEEEECCCCCTT
T ss_pred CccEEEEEEecCCCCC-CceeeEEEEECCCCEEEEeecCCC----------------CccceEEEccCcEEEeecCcccc
Confidence 5578999988743222 2358999999 889999876321 2356789999888765433
Q ss_pred ---CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 186 ---SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 186 ---~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
...-.++|+|... ++.|.|+|.|.+|++.||++|..+.
T Consensus 70 ~~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i 110 (117)
T 1v5u_A 70 APKTVDEKAFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQSCL 110 (117)
T ss_dssp SCSSSCTTTCEEEEES-SCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred ccccCCCCeEEEEECC-CceEEEECCCHHHHHHHHHHHHHHh
Confidence 1234589999765 6679999999999999999996643
No 57
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.16 E-value=2.5e-06 Score=80.51 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC---C
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD---S 186 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d---~ 186 (966)
....+++|.|.|.....+. -+.|||.|.++.|.|.|... ....++.|+|.++..+.... .
T Consensus 11 ~~~~~~~G~L~K~g~~~~~-Wk~R~fvL~~~~L~yy~~~~----------------~~~~~g~i~l~~~~~v~~~~~~~~ 73 (125)
T 1eaz_A 11 DSAVIKAGYCVKQGAVMKN-WKRRYFQLDENTIGYFKSEL----------------EKEPLRVIPLKEVHKVQECKQSDI 73 (125)
T ss_dssp -CCCSEEEEEEEECTTTCC-EEEEEEEECSSEEEEESSTT----------------CSSCSEEEEGGGCCEEEECTTHHH
T ss_pred CCCccEEEEEEEeCCCCCC-cceEEEEEeCCEEEEEcCCC----------------CCcceeEEEcccceEEeecccccc
Confidence 3567889999987322222 35899999999999998632 12456788999876443321 1
Q ss_pred CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 187 DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 187 ~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
..-.|+|+|... ++.|.|+|.|.+|.+.||++|..+..
T Consensus 74 ~~~~~~F~i~~~-~r~~~l~a~s~~e~~~W~~al~~~i~ 111 (125)
T 1eaz_A 74 MMRDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGAIV 111 (125)
T ss_dssp HTCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcCCEEEEEeC-CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 234789999976 66799999999999999999977554
No 58
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.14 E-value=7.5e-06 Score=78.48 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=67.1
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEec-cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeecc--ceEE------
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLF-DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRR--IEIL------ 181 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLF-d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~--~~I~------ 181 (966)
+..+++|-|.|.....+. =+.|||.|. ++.|.|-|.... ...++.|.+.. ..|.
T Consensus 6 ~~v~~~G~L~K~g~~~k~-WkkRwFVL~~~~~L~Yyk~~~~----------------~~~~g~i~l~~~~~~i~~~~~~~ 68 (130)
T 2d9v_A 6 SGLVRGGWLWRQSSILRR-WKRNWFALWLDGTLGYYHDETA----------------QDEEDRVVIHFNVRDIKVGQECQ 68 (130)
T ss_dssp CCEEEEEEEEEECSSSCC-EEEEEEEEETTTEEEEESSSST----------------TSEEEEEECTTTEEEEEEGGGCS
T ss_pred CceeEEEEEEeecCccCC-ceeeEEEEccCCEEEEEeCCCC----------------CCcCceEecccceeEEecccccc
Confidence 578899999998432333 257888885 888888876321 12445554431 1121
Q ss_pred eC--CCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 182 DL--PDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 182 d~--~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+. .+...-+|+|+|...+++.|.|+|.|.+|.+.||++|..+..+
T Consensus 69 ~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 69 DVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp SCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 11 2223357899999876678999999999999999999775543
No 59
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.13 E-value=8.5e-06 Score=77.29 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=72.8
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC----
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD---- 188 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~---- 188 (966)
-+++|.|.|-.. ..+.-+.|||.|-++.|.|-|....+ ..-...+.|+|.++.|....+.+.
T Consensus 6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~~L~yyK~~~~~-------------~d~~P~gsI~L~~c~v~~~~~~~~~~~~ 71 (120)
T 4a6h_A 6 EIKSGFLERRSK-FLKSYSKGYYVLTPNFLHEFKTADRK-------------KDLVPVMSLALSECTVTEHSRKNSTSSP 71 (120)
T ss_dssp CSEEEEEEEEET-TTTEEEEEEEEECSSEEEEESSCCTT-------------TCCSCSEEEEGGGEEEEEECCCCC----
T ss_pred ccEEEEEEEcCC-CCCCCccEEEEEeCCEEEEEcCCCcC-------------cCCCceEEEECCCCEEEEcccccccccc
Confidence 678899998743 23334689999999988888764211 112346789999999998665543
Q ss_pred ----CcceEEEEeCCC------ccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 189 ----YKNAFQIVPRCG------SPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 189 ----~~naF~I~~~~~------~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
-.+.|.|...+. ..|+|.|.|.+|.++||++|..+.
T Consensus 72 ~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 72 NSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp -----CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred cccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 567899988764 369999999999999999998754
No 60
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.13 E-value=9e-06 Score=80.09 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=72.2
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-CCCC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-SDDY 189 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-~~~~ 189 (966)
...++||.|.|-..+.+.. +.|||.|=++.|.|.|... ....++.|+|.++.+...++ .+..
T Consensus 16 ~pv~keG~L~Kkg~~~k~W-krRWFvLk~~~L~Yyk~~~----------------d~~~~g~I~L~~~~~~~~~~~~~~~ 78 (149)
T 1x1f_A 16 LPLYFEGFLLIKRSGYREY-EHYWTELRGTTLFFYTDKK----------------SIIYVDKLDIVDLTCLTEQNSTEKN 78 (149)
T ss_dssp SCEEEEEEEEEECTTCCSC-EEEEEEEETTEEEEESCSS----------------CSSCSEECCCSSCCEEEECCCTTSC
T ss_pred CCccEEEEEEEeCCCCCCc-eeEEEEEcCCEEEEEeCCC----------------ccccCcEEECCCceEEeeccCCCCc
Confidence 4589999999984333333 5899999999999988632 12345788899887663222 2234
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.|+|+|... +..|.|+|.|.+|++.||++|..+..
T Consensus 79 ~~~F~I~t~-~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 79 CAKFTLVLP-KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp CCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcC-CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 689999986 56799999999999999999987654
No 61
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.10 E-value=7.8e-06 Score=75.39 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=68.3
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
+..+++|.|.|. ..+.. +.|||.|-++.|.|.|.... .-.-...|.+.++.|....+ ..-+
T Consensus 6 ~~~~~~G~L~K~--~~k~W-k~RwfvL~~~~L~yyk~~~~---------------~~~~~~~i~l~~~~v~~~~~-~~~~ 66 (107)
T 2cof_A 6 SGLETSSYLNVL--VNSQW-KSRWCSVRDNHLHFYQDRNR---------------SKVAQQPLSLVGCEVVPDPS-PDHL 66 (107)
T ss_dssp CCCTTCCEEEEE--ETTEE-EEEEEEECSSCEEEECSSTT---------------CSEEEEEECTTTCEEECCCB-TTBS
T ss_pred CCCcEeEEEEEe--cCCCc-ceEEEEEECCEEEEEeCCcc---------------cCCCeeEEeccceEEEECCC-CCCC
Confidence 355678888887 23332 48999999999999886321 12233455666666654443 3467
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
|+|+|...+++.|.|+|.|.+|...||++|....
T Consensus 67 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 67 YSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp CEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred eEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 8999998756669999999999999999997643
No 62
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=98.08 E-value=1.8e-05 Score=75.95 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=75.7
Q ss_pred ceEeeeccEEEe--ecCCC---CCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC
Q psy4663 111 NEFFREDTLLKL--NIGKK---TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD 185 (966)
Q Consensus 111 ~~li~eG~l~ki--~~~~~---~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d 185 (966)
...+++|.|.|- ..+.+ +.=+.|||.|=++.|.|-|....... +. +.......-.+.|+|+++.|....|
T Consensus 10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~----~~-~~~~~~~~p~g~I~L~~~~v~~~~~ 84 (129)
T 2p0d_A 10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAP----SS-GWGPAGSRPESSVDLRGAALAHGRH 84 (129)
T ss_dssp CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC-------------------CCSEEEECTTCEEEECTT
T ss_pred cceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccc----cc-cccccCCCCccEEEeCCcEEEECCC
Confidence 367789999862 11221 22257999999999999987421000 00 0001234567789999998876655
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
...-+|.|+|...++..|.|+|.|.+|.++||.+|..++.+
T Consensus 85 ~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 85 LSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp SCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 55568999999887777999999999999999999876554
No 63
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=98.06 E-value=8.1e-06 Score=77.71 Aligned_cols=106 Identities=15% Similarity=0.261 Sum_probs=72.6
Q ss_pred eEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-CCCc
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-DDYK 190 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~ 190 (966)
..+++|-|.|.....+. -+.|||.|=++.|.|-|....... . ...+| -..+|.|+|.++.|....+. ..-+
T Consensus 11 ~~~k~G~L~K~g~~~k~-Wk~RwfVL~~~~L~yyk~~~~~~~-e-~~plg-----~~~~G~I~L~~~~v~~~~~~~~~k~ 82 (124)
T 2w2x_D 11 EHKQQGELYMWDSIDQK-WTRHFCAIADAKLSFSDDIEQTME-E-DNPLG-----SLCRGILDLNTYNVVKAPQGKNQKS 82 (124)
T ss_dssp --CCEEEEEEEETTTTE-EEEEEEEEETTEEEEEEEHHHHHH-C-SSCCC-----CSCSEEEEGGGEEEEECTTCBTTBS
T ss_pred hcceeEEEEEECCCCCC-ceEeEEEEECCEEEEEcccccccc-c-ccccC-----CccccEEECCCCEEEEccCCcCCCC
Confidence 56789999987432332 258999999999988875211000 0 00011 23478899999999887653 3467
Q ss_pred ceEEEEeCCC--ccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 191 NAFQIVPRCG--SPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 191 naF~I~~~~~--~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
|+|+|...+. ..|.|+|.|.||.++||.+|..+..
T Consensus 83 ~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~ 119 (124)
T 2w2x_D 83 FVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITW 119 (124)
T ss_dssp EEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence 8999987643 4599999999999999999987543
No 64
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=98.06 E-value=3.8e-05 Score=80.07 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=76.0
Q ss_pred ceEeeeccEEEeecCC---CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC--
Q psy4663 111 NEFFREDTLLKLNIGK---KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-- 185 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~---~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-- 185 (966)
...+++|.|.|...+. .+.-+.|||.|-++.|.|.|.... ...++.|+|.++.+....+
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~----------------~~p~g~I~L~~~~~v~~~~~~ 167 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYDVRMNNTLR 167 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECGGGC
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCC----------------ccceEEEEeCCcEEEEcCCcc
Confidence 4589999999885321 223358999999999999986321 2457789999999887543
Q ss_pred -CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 186 -SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 186 -~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
...-.|+|+|...+++.|.|+|.|.+|...||.+|..+..
T Consensus 168 ~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 168 KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp SSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 2234689999987667899999999999999999987654
No 65
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.04 E-value=1.4e-05 Score=76.81 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=71.2
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
+..+++|-|.|- +..+.=+.|||.|=++.|.|-|... ...-++.|+|.++.|.+..+. .-.
T Consensus 6 ~~v~k~GwL~K~--g~~k~WkrRWfVLk~~~L~yyk~~~----------------~~~p~G~I~L~~~~v~~~~~~-~~~ 66 (130)
T 1v88_A 6 SGIVMADWLKIR--GTLKSWTKLWCVLKPGVLLIYKTQK----------------NGQWVGTVLLNACEIIERPSK-KDG 66 (130)
T ss_dssp SSCCEEEEEEEC--CSSSSCEEEEEEEETTEEEEESCSS----------------SCCCCEEEECSSCEECCCCTT-TSS
T ss_pred CceEEEeEEEEe--CCCCCceEEEEEEECCEEEEECCCC----------------CCCceEEEEcCCCEEEECCCC-CCC
Confidence 467889999885 3333336899999999999988632 134567899999998765433 235
Q ss_pred ceEEEEeCCCc-----------------------cEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 191 NAFQIVPRCGS-----------------------PVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 191 naF~I~~~~~~-----------------------~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
|+|+|...+.. .|.|.|.|++|.++||++|.....
T Consensus 67 ~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 67 FCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp CEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 89999864331 288999999999999999987554
No 66
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.02 E-value=1.5e-05 Score=75.70 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=67.9
Q ss_pred EeeeccEEEeecCCCCCccceEEEeccCceEEee----cCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC---C
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFLFDGLLLLCK----PNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP---D 185 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK----~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~---d 185 (966)
+.++|-|.|..+...|.=+-|||.|=+++|-|.| ... +-.-.|.|.|.++.|..++ |
T Consensus 8 ~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~----------------~~~p~G~I~L~g~tV~~~~~~~~ 71 (126)
T 1wi1_A 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREK----------------KAEPQELLQLDGYTVDYTDPQPG 71 (126)
T ss_dssp EEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSS----------------SSCCSEEEECSSCEEEECCCCSS
T ss_pred CceeEEEEEeCCCcccccceEEEEEeCCEEEEEEccccccc----------------CCCCceEEECCCcEEEEecCCcc
Confidence 5688999888321222225799999999888877 321 1233578999999887543 2
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
...-+|+|+|... +.+|.|+|.|++|++.||.+|.+
T Consensus 72 ~~~~k~~F~~v~~-~~ty~~~Adseee~~~WikAi~~ 107 (126)
T 1wi1_A 72 LEGGRAFFNAVKE-GDTVIFASDDEQDRILWVQAMYR 107 (126)
T ss_dssp CCSCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHH
T ss_pred cccCceEEEEecC-CceEEEEcCCHHHHHHHHHHHHH
Confidence 2346899999876 55699999999999999999966
No 67
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.02 E-value=3.3e-06 Score=80.03 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=64.9
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEecc-CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC---CC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFD-GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP---DS 186 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd-~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~---d~ 186 (966)
...+++|.|.|.....+. =+.|||.|-+ ..|.|.|.... -..++.|+|.++.+.+.. ..
T Consensus 6 ~~~~~~G~L~K~g~~~k~-WkkRwfvL~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~~~~~~~~~~ 68 (125)
T 1unq_A 6 VAIVKEGWLHKRGEYIKT-WRPRYFLLKNDGTFIGYKERPQ----------------DVDQREAPLNNFSVAQCQLMKTE 68 (125)
T ss_dssp GCEEEEEEEEEECSSSCC-EEEEEEEEETTSEEEEESSCCC----------------SHHHHTSCSEEEECTTCEEEEEC
T ss_pred CCeeEEeeEEeccCCccC-ccCcEEEEecCCEEEEEeCCCC----------------CCCCceeEccceeEEeeeecccc
Confidence 467899999987322232 2589999994 58888876422 112334455544433210 11
Q ss_pred CCCcceEEEEe---CCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 187 DDYKNAFQIVP---RCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 187 ~~~~naF~I~~---~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
..-.|+|+|.. .....|.|+|.|.+|+..||++|..+..+
T Consensus 69 ~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 69 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 23568999986 33456999999999999999999876544
No 68
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.02 E-value=1.6e-05 Score=73.58 Aligned_cols=97 Identities=24% Similarity=0.249 Sum_probs=65.6
Q ss_pred eEeeeccEEEeecCCCCCccceEEEe-ccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEE-----e---
Q psy4663 112 EFFREDTLLKLNIGKKTESTERVCFL-FDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL-----D--- 182 (966)
Q Consensus 112 ~li~eG~l~ki~~~~~~~~~eR~~FL-Fd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~-----d--- 182 (966)
..+++|-|.|.....+.. +.|||.| =++.|.|.|... .-..++.|+|....|. .
T Consensus 4 ~~~~~G~L~K~g~~~k~W-kkR~fvL~~~~~L~yyk~~~----------------~~~~~g~i~l~~~~i~l~~~~~v~~ 66 (112)
T 3aj4_A 4 AFVKSGWLLRQSTILKRW-KKNWFDLWSDGHLIYYDDQT----------------RQNIEDKVHMPMDCINIRTGQECRD 66 (112)
T ss_dssp SCSEEEEEEEECSSSCCE-EEEEEEECTTSEEEEESSTT----------------CCSEEEEEEHHHHEEEEEEGGGCCS
T ss_pred ceeEEEEEEeeCCCCCCe-eceEEEEeeCCEEEEEcCCC----------------CCCCCccccccccceeecccccccc
Confidence 356789999874322322 5789988 466787877532 1234566766654322 2
Q ss_pred --CCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 183 --LPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 183 --~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
..+...-.|+|+|...++..|.|+|.|.+|.+.||++|..+.+
T Consensus 67 v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 67 TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp CCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 2222223679999977677899999999999999999987654
No 69
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=98.01 E-value=1.8e-05 Score=75.51 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred eEeeeccEEEeecC-CCCCccceEEEeccCceEEeecCC--------CCcccccccCCCCCCCceE-EeEEEeeccceEE
Q psy4663 112 EFFREDTLLKLNIG-KKTESTERVCFLFDGLLLLCKPNS--------KRTSVSVTAPLGGNQGEYR-LKERFFIRRIEIL 181 (966)
Q Consensus 112 ~li~eG~l~ki~~~-~~~~~~eR~~FLFd~~Ll~cK~~~--------~~~~~~~~~~~g~~~~~y~-~k~~i~l~~~~I~ 181 (966)
..++||.|.|.++. ..+.=+.|||.|-++-+|+.+... ++ .+. ....... -.+.|+|.+..+.
T Consensus 3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~-~i~------l~~~~~~~~~~~i~l~~~~~~ 75 (128)
T 2rlo_A 3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGK-EMD------LLRTTVKVPGKRPPRAISAFG 75 (128)
T ss_dssp CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCE-EEE------SSSCEEECSSCCCCCSSCCCS
T ss_pred cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCC-eee------eeeeEEecCCCcccccccccc
Confidence 45799999998431 223335899999975555555320 00 000 0000000 0123344443332
Q ss_pred eC-----CCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 182 DL-----PDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 182 d~-----~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
.. ...++-+|+|+|...+++.|.|+|.|.+|++.||++|......++
T Consensus 76 ~~~~~~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l 127 (128)
T 2rlo_A 76 PSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127 (128)
T ss_dssp CCSCCCCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence 11 111245789999988667899999999999999999988766543
No 70
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2.6e-05 Score=72.73 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=67.0
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
...+++|.|.|...+.++.=+.|||.|-++.|.|.|..... -.+.+.+.+..|.... +-+
T Consensus 8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~-----------------~~~~i~l~~~~v~~~~---~~~ 67 (114)
T 2da0_A 8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR-----------------QPAKLNLLTCQVKPNA---EDK 67 (114)
T ss_dssp CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCCS-----------------CCEEEETTTSEEEECS---SSS
T ss_pred CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCCC-----------------CCCEEEeeeeEEEECC---CCC
Confidence 35678999998854332333589999999999998863211 1233445555555322 246
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
++|+|... ++.|.|+|.|.+|...||++|..+..+.
T Consensus 68 ~~F~I~~~-~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 103 (114)
T 2da0_A 68 KSFDLISH-NRTYHFQAEDEQDYVAWISVLTNSKEEA 103 (114)
T ss_dssp SCEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 79999976 6679999999999999999997755443
No 71
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=2.6e-05 Score=73.37 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=69.5
Q ss_pred eEeeeccEEEeecC-CCCCccceEEEeccC--ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC
Q psy4663 112 EFFREDTLLKLNIG-KKTESTERVCFLFDG--LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD 188 (966)
Q Consensus 112 ~li~eG~l~ki~~~-~~~~~~eR~~FLFd~--~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~ 188 (966)
.-+++|.|.|...+ ..+.=+.|||.|-++ .|.|-|.... -..++.|+|.++.++...+ .
T Consensus 7 ~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~~~~~~--~ 68 (119)
T 2dhk_A 7 GKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD----------------ANPLDSIDLSSAVFDCKAD--A 68 (119)
T ss_dssp CCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTC----------------CSCSEEEEGGGCEEEECTT--G
T ss_pred CCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCC----------------cccccEEECCCCEEEecCC--C
Confidence 45678888887321 122225799999988 8888876321 2457789999998876432 3
Q ss_pred CcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 189 YKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 189 ~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
-.+.|+|... ++.|.|+|.|.+|.+.||++|..+.
T Consensus 69 ~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 69 EEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp GGCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 4679999877 6679999999999999999997654
No 72
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=97.93 E-value=5.6e-05 Score=72.06 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=63.4
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCce--EEeEEEeeccceEEeCCCCCCCcceEEEEeC-CCccEEEEe
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEY--RLKERFFIRRIEILDLPDSDDYKNAFQIVPR-CGSPVILIA 207 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y--~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~-~~~~~~l~a 207 (966)
+.|||.|-++.|+|-+.++.+ |.....| .-.+.++|.+..|+ ..|...-+|+|+|... .+..|.|+|
T Consensus 25 kr~W~vL~g~~L~yf~~~~~~---------~~~~~~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~L~~~~~G~~Y~fqA 94 (126)
T 2dtc_A 25 TRYWVVLSGATLLYYGAKSLR---------GTDRKHYKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQLNNPDKGNVYKFQT 94 (126)
T ss_dssp EEEEEEEETTEEEEEEBSSSC---------CSSGGGBCSSCSEEEECTTCEEE-CCCCTTSTTEEEEECTTSCSEEEEEC
T ss_pred ccEEEEEeCCEEEEEcccccc---------cccccccccCCCceEEeCCCEEE-ecCCCCCCCEEEEeeCCCCCEEEEeC
Confidence 689999999999998875321 1112233 33668999999998 4444456899999976 466799999
Q ss_pred CCchhhhhhHHHHHHH
Q psy4663 208 NSPEDKNNWMADLIML 223 (966)
Q Consensus 208 ks~eeK~~W~~~L~~l 223 (966)
.|+++...|+++|...
T Consensus 95 ~s~~~~~~W~~ai~~a 110 (126)
T 2dtc_A 95 GSRFHAILWHKHLDDA 110 (126)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999763
No 73
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=97.92 E-value=0.00018 Score=80.59 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=78.7
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCc
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYK 190 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~ 190 (966)
..-+++|.|.|..+. .+.-+.|||.|-++.|.|.|.... -..+|.|+|.++.|....+. .-+
T Consensus 211 ~~~~k~G~L~K~g~~-~k~WkkRwFVL~~~~L~Yyk~~~~----------------~~p~G~I~L~~~~v~~~~~~-~~~ 272 (347)
T 2r09_A 211 FNPDREGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENLSIREVEDP-RKP 272 (347)
T ss_dssp CCCCEEEEEEEECSS-SCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEEECCS-SCS
T ss_pred cccccCCeeEecCCC-cccceeEEEEEcCCEEEEEcCCCc----------------cCCcEEEEcCCeEEEEccCC-CCC
Confidence 345899999988322 222358999999999999886321 23467899999988876543 467
Q ss_pred ceEEEEeCC---------------------CccEEEEeCCchhhhhhHHHHHHHhhhhhhHhhh
Q psy4663 191 NAFQIVPRC---------------------GSPVILIANSPEDKNNWMADLIMLNTKSMFERTL 233 (966)
Q Consensus 191 naF~I~~~~---------------------~~~~~l~aks~eeK~~W~~~L~~l~~~~~~~r~l 233 (966)
++|+|...+ ...|.|+|.|.+|...||++|..+..+.....++
T Consensus 273 ~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~~~l 336 (347)
T 2r09_A 273 NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDML 336 (347)
T ss_dssp SEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 899998653 2459999999999999999999988776655433
No 74
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.92 E-value=4.9e-05 Score=86.42 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=71.9
Q ss_pred ceEeeeccEEEeecCC-CC-CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC
Q psy4663 111 NEFFREDTLLKLNIGK-KT-ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD 188 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~-~~-~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~ 188 (966)
+..+++|.|.|...+. .+ .=+.|||+|=++.|.|-|.... . -.+.|+|..+.|...++ .+
T Consensus 276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~~~------------~-----~~~~i~l~~~~v~~~~~-~~ 337 (385)
T 2q13_A 276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDV------------A-----GGLAMDIDNCSVMAVDC-ED 337 (385)
T ss_dssp CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECSSCS------------S-----CEEEEECTTCEEEEECC-TT
T ss_pred CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCCCc------------C-----CCceEEccceEEEeccc-cC
Confidence 3678999999874321 12 1258999999999999887211 0 13678888888876654 35
Q ss_pred CcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 189 YKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 189 ~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
-+|+|+|...++ +.|+|+|.|.+|...||++|..+..+.
T Consensus 338 r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~ 377 (385)
T 2q13_A 338 RRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQI 377 (385)
T ss_dssp CSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 679999998854 679999999999999999998755443
No 75
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=97.91 E-value=4.2e-05 Score=71.37 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=65.4
Q ss_pred eeccEEEeecC---CCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEE--eCCCCCCC
Q psy4663 115 REDTLLKLNIG---KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL--DLPDSDDY 189 (966)
Q Consensus 115 ~eG~l~ki~~~---~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~--d~~d~~~~ 189 (966)
+||-|.+-.++ ..+.=+.|||.|=++.|.|-|.... ..-++.|+|.+..+. ...+...-
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~----------------~~p~~~i~l~~~~~~~~~~~~~~~r 65 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTD----------------VIPLLSVNMGGEQCGGCRRANTTDR 65 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSC----------------CSCSEEEETTC-CEEEEEECCCSSC
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCC----------------CCccceEEecCCEEEeeeccCCCCC
Confidence 57888643221 1222257999998999888886421 111345777755443 33344456
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+|+|+|...++..|.|+|.|.||.+.||++|......
T Consensus 66 ~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 66 PHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp TTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 8999999887888999999999999999999775443
No 76
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.89 E-value=5.3e-05 Score=73.87 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=73.7
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCceEEeecCCCC-cccccccC-CCCCCC------ce------------------
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR-TSVSVTAP-LGGNQG------EY------------------ 167 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~-~~~~~~~~-~g~~~~------~y------------------ 167 (966)
+++|.|++-..-++.. +.|+|.||++.|.|++-.+.. ..-.-... .+.... +|
T Consensus 2 ~k~G~L~~~~~~~~~w-~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~ 80 (150)
T 2fjl_A 2 IKNGILYLEDPVNHEW-YPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLD 80 (150)
T ss_dssp CEEEEEEEEETTTTEE-EEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSC
T ss_pred CcceEEEeecCCCCCc-eEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhccc
Confidence 4788888664334433 689999999999999843210 00000000 000000 11
Q ss_pred -------EEeEEEeeccceEEeCCCC-CCCcceEEEEeCCC--ccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 168 -------RLKERFFIRRIEILDLPDS-DDYKNAFQIVPRCG--SPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 168 -------~~k~~i~l~~~~I~d~~d~-~~~~naF~I~~~~~--~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
-.+|.|+|.++.|....++ .+-.|.|+|...+. ..|.|.|.|.|+...||.+|..+..
T Consensus 81 E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 81 ENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp TTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 1279999999999987764 34689999986643 2499999999999999999987654
No 77
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=97.84 E-value=3.8e-05 Score=70.11 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=56.6
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
+.|||.|=++.|.|.|...... .+..+.-...|++.+..+.-..+...-+|+|+|...++..|.|+|.|.
T Consensus 24 k~rwfvL~~~~L~yyk~~~~~~----------~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~ 93 (106)
T 1btn_A 24 HNVYCVINNQEMGFYKDAKSAA----------SGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDD 93 (106)
T ss_dssp EEEEEEEETTEEEEESSHHHHH----------HTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSH
T ss_pred hEEEEEEECCEEEEEeCCcccc----------cCCCCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCH
Confidence 5799999999998887532000 001111223456666655544444456889999987677899999999
Q ss_pred hhhhhhHHHHHH
Q psy4663 211 EDKNNWMADLIM 222 (966)
Q Consensus 211 eeK~~W~~~L~~ 222 (966)
+|.+.||.+|..
T Consensus 94 ~e~~~Wi~ai~~ 105 (106)
T 1btn_A 94 EEMNTWIQAISS 105 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999854
No 78
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.82 E-value=3.4e-05 Score=72.85 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=68.7
Q ss_pred eEeeeccEEEeecC---C----CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC
Q psy4663 112 EFFREDTLLKLNIG---K----KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP 184 (966)
Q Consensus 112 ~li~eG~l~ki~~~---~----~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~ 184 (966)
..++||.|.|-... . .+.=+.|||.|=++.|.|.|..... . .+..+.-...|.|.+..+....
T Consensus 7 ~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~-------~---~~~~~~~~~~i~l~~~~~~~~~ 76 (123)
T 1wjm_A 7 GEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAA-------S---AGVPYHGEVPVSLARAQGSVAF 76 (123)
T ss_dssp CCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHH-------T---TTCBSSSCCCEECTTCEEEECT
T ss_pred CeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEccccc-------c---cCcccCCCceEEccCcEEeecc
Confidence 45678888754211 0 1222589999999999998763110 0 0001111123566666665555
Q ss_pred CCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 185 DSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 185 d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
|...-+|.|+|...++..|.|+|.|.+|.+.||++|..+..
T Consensus 77 ~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 77 DYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp TCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence 54567899999988677899999999999999999977543
No 79
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.80 E-value=8.2e-05 Score=71.06 Aligned_cols=105 Identities=12% Similarity=0.004 Sum_probs=66.1
Q ss_pred CCcccceEeeeccEEEeecCCCCCccceEEEec--cCceE-EeecCCCCcccccccCCCCCCCceEEeEEEeecc-ceEE
Q psy4663 106 IGQCCNEFFREDTLLKLNIGKKTESTERVCFLF--DGLLL-LCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRR-IEIL 181 (966)
Q Consensus 106 i~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLF--d~~Ll-~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~-~~I~ 181 (966)
+....+...++|-|.|-..+..+.-+.|||.|= ++.+| |.|.... + ...-..+|.|+|.. ..|.
T Consensus 8 ~~~~~~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~---~---------~~~~~~~G~I~L~~~~~V~ 75 (126)
T 1v5p_A 8 MPYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQN---L---------AVGAGAVGSLQLTYISKVS 75 (126)
T ss_dssp SCCCCCCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTT---S---------CTTCCCSEEEETTTCCEEE
T ss_pred CceecCCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCC---C---------CCCceeeEEEECCCccEEe
Confidence 333356777899999983222222245666663 15444 5454110 0 01235677889987 4565
Q ss_pred eCC--CCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 182 DLP--DSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 182 d~~--d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
... +..+.+|+|.|... .+.|.|+|.|++|.+.||++|..+
T Consensus 76 ~~~~~~~~~~~~~F~i~t~-~r~y~l~A~s~~e~~~Wi~al~~a 118 (126)
T 1v5p_A 76 IATPKQKPKTPFCFVINAL-SQRYFLQANDQKDLKDWVEALNQA 118 (126)
T ss_dssp ECCTTTSCSCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCcccCCCCCEEEEEECC-CEEEEEECCCHHHHHHHHHHHHHH
Confidence 543 23345789977654 667999999999999999999764
No 80
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.79 E-value=6.7e-05 Score=80.83 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=75.0
Q ss_pred ceEeeeccEEE--e----ecCC-----CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccce
Q psy4663 111 NEFFREDTLLK--L----NIGK-----KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIE 179 (966)
Q Consensus 111 ~~li~eG~l~k--i----~~~~-----~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~ 179 (966)
+..+++|.|.+ + ..|. .+.=+.|||.|=++.|.|-|..... .......-++.|+|.+..
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~----------~~~~~~~p~g~I~L~~~~ 78 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKN----------STEQNSAPRCALFAEDSI 78 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC----------------CCCSEEEECTTCE
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccc----------ccccccCccceEEcCCcE
Confidence 56788999872 1 1121 2222589999999999999864210 011234456789999888
Q ss_pred EEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 180 ILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 180 I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
|....+...-+|+|+|...++..|.|+|.|.+|.+.||++|..+...
T Consensus 79 v~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~ 125 (263)
T 3a8p_A 79 VQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACAS 125 (263)
T ss_dssp EEECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 88766554568999999876778999999999999999999876554
No 81
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.76 E-value=0.00012 Score=83.77 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=69.3
Q ss_pred cceEeeeccEEEeec-C-CCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCC
Q psy4663 110 CNEFFREDTLLKLNI-G-KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~-~-~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~ 187 (966)
.+...++|.|.|-+. | .++.=+-|||+|=++.|.|.|...... .+.+.|..+.|...++.
T Consensus 298 ~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~-----------------~~~~~l~~~~v~~~~~~- 359 (407)
T 4h8s_A 298 RNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG-----------------GLIQDLDNCSVMAVDCE- 359 (407)
T ss_dssp CSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC-----------------CCCBCSSCCEEEEECCT-
T ss_pred CCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC-----------------CeEEECCceEEEECCCC-
Confidence 345678999987642 2 122225799999999999987643211 11355666666654443
Q ss_pred CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 188 DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 188 ~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+-+|+|+|...++ ..|+|+|.|.+|...||++|..+..+
T Consensus 360 ~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~ 399 (407)
T 4h8s_A 360 DRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQ 399 (407)
T ss_dssp TCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred CCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 4679999998755 45999999999999999999765443
No 82
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=97.69 E-value=9.6e-05 Score=73.76 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=60.1
Q ss_pred eEeeeccEEE----------eecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeecc--ce
Q psy4663 112 EFFREDTLLK----------LNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRR--IE 179 (966)
Q Consensus 112 ~li~eG~l~k----------i~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~--~~ 179 (966)
..++||-|.+ .....+.+ +.|||.|=++.|.|.|.... ..-..++.|+|.. +.
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~W-kkRwfvL~~~~L~yyk~~~~--------------~~~~~~g~i~l~~~~~~ 66 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPW-KQMYVVLRGHSLYLYKDKRE--------------QTTPSEEEQPISVNACL 66 (168)
T ss_dssp -CCEEEEEEEEECC------------CC-EEEEEEEETTEEEEESCTTC--------------C--------CEECSSCE
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCc-eEEEEEEeCCEEEEEECCcc--------------cccccCCceEecccceE
Confidence 3467888873 21111222 58999999999999886421 0112345566665 22
Q ss_pred EEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 180 ILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 180 I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
+.-..+...-+|+|+|...+ ..|.|+|.|.+|.+.||++|..+..
T Consensus 67 ~~~~~~~~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 67 IDISYSETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp EEECSSSCSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEeccccCCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 22222333467899999874 5799999999999999999987654
No 83
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.68 E-value=7.8e-05 Score=78.62 Aligned_cols=97 Identities=23% Similarity=0.298 Sum_probs=73.8
Q ss_pred ceEeeeccEEEeecCC----CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC
Q psy4663 111 NEFFREDTLLKLNIGK----KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS 186 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~----~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~ 186 (966)
...+++|.|.|..... .+.-+.|||.|-++.|.|.|... .-..++.|+|.++.+....+
T Consensus 56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~----------------~~~~~g~I~L~~~~~v~~~~- 118 (228)
T 3tfm_A 56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS----------------EEKLKGTVEVRSAKEIIDNT- 118 (228)
T ss_dssp CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTT----------------CCSEEEEEEGGGCSEEEEET-
T ss_pred CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCC----------------CcceeEEEEcCCCEEeccCC-
Confidence 4567899998874322 13336899999999999998632 13567899999988654322
Q ss_pred CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 187 DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 187 ~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.-+|+|+|... ++.|.|+|.|.+|.+.||++|..+...
T Consensus 119 -~k~~~F~I~t~-~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 119 -NKENGIDIIMA-DRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp -TTTSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred -CCCcEEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 34689999875 667999999999999999999887764
No 84
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.66 E-value=0.00012 Score=68.40 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=61.1
Q ss_pred eccEEEeecCCCCCccceEEEeccC--ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC--CCCcc
Q psy4663 116 EDTLLKLNIGKKTESTERVCFLFDG--LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS--DDYKN 191 (966)
Q Consensus 116 eG~l~ki~~~~~~~~~eR~~FLFd~--~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~--~~~~n 191 (966)
.|-|.|- +..+.=+.|+|.|=++ .+||+-+... ..+-++.|+|.++.|...+.. .+-+|
T Consensus 11 ~G~L~k~--~~~~~WkkrWfVL~~~~~~~Ly~Yk~~~---------------d~~p~g~I~L~g~~V~~~~~~~~~~~~~ 73 (112)
T 2coc_A 11 CGPLRLS--ESGETWSEVWAAIPMSDPQVLHLQGGSQ---------------DGRLPRTIPLPSCKLSVPDPEERLDSGH 73 (112)
T ss_dssp EEEEEEE--SSSSCEEEEEEECCTTCTTCEEEECCTT---------------CSSSCSEECGGGCEEECCCSSSCCSSSE
T ss_pred EEEEEec--CCCCCceEEEEEEECCCccEEEEECCCC---------------ccCcceEEEcCCCEEEecCcccccCCCC
Confidence 4777664 2323224677777654 4555533211 123456799999999853333 23579
Q ss_pred eEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 192 AFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 192 aF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
+|+|... +..|.|.|.|.|+.++||++|....
T Consensus 74 ~Fki~~~-~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 74 VWKLQWA-KQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp EEEEEET-TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEecC-CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 9999965 5579999999999999999997643
No 85
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.59 E-value=0.00019 Score=81.57 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=73.0
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccc----eEEeCCCC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRI----EILDLPDS 186 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~----~I~d~~d~ 186 (966)
+.++++|-|.|......+.-+.|||.|-++.|.|.|.... -.-+|.|+|.++ .|.+....
T Consensus 267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d----------------~~~~G~I~L~~~~~~~~v~~~~~~ 330 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLD----------------AFARGEVFIGSKESGYTVLHGFPP 330 (386)
T ss_dssp CCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTC----------------SBCSEEEECCCGGGTCEEEESCCT
T ss_pred cccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCC----------------cccceEEEeecceeeeeecccCCc
Confidence 5788999999984333133368999999999999987321 134567777543 33343221
Q ss_pred C----CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 187 D----DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 187 ~----~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
+ ..+|+|+|... ++.|.|+|.|.+|++.||++|..++.+.+
T Consensus 331 ~~~~~~~~~~F~I~t~-~rty~l~A~s~~e~~~Wi~aL~~~i~~p~ 375 (386)
T 3lju_X 331 STQGHHWPHGITIVTP-DRKFLFACETESDQREWVAAFQKAVDRPM 375 (386)
T ss_dssp TCCSCCSCEEEEEECS-SCEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCcEEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHhccC
Confidence 1 12689999977 56799999999999999999998777654
No 86
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=97.54 E-value=0.00014 Score=69.48 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=68.5
Q ss_pred eEeeeccEEEeecC-CCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceE---EeCCC-C
Q psy4663 112 EFFREDTLLKLNIG-KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEI---LDLPD-S 186 (966)
Q Consensus 112 ~li~eG~l~ki~~~-~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I---~d~~d-~ 186 (966)
..+++|-|.|...+ ..+.=+.|||.|=++.|.|-|.... ...-.-++.|+|.++.+ ...++ .
T Consensus 4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d-------------~~~~~p~g~I~L~~~~~~~v~~~~~~~ 70 (134)
T 2y7b_A 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDD-------------EKRKNPIGRINLANCTSRQIEPANREF 70 (134)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHH-------------HTTSCCSEEEEGGGBCSSSCEECCTTT
T ss_pred CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCc-------------ccccCceEEEEhhhCccccccccchhh
Confidence 45678998876322 2222258999999999999884210 00123467899998874 33322 1
Q ss_pred CCCcceEEEEeC--CC-----------------ccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 187 DDYKNAFQIVPR--CG-----------------SPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 187 ~~~~naF~I~~~--~~-----------------~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
..-+|+|+|... .. ..|.|+|.|.+|...||++|..+...
T Consensus 71 ~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 71 CARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp CCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 345789999862 11 24999999999999999999876543
No 87
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=97.41 E-value=0.0006 Score=64.69 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=71.2
Q ss_pred ceEeeeccEEE--eecCCC----CCccceEEEeccCceEEeecCCCCcccccccCCC-CCCCce-EEeEEEeeccceEEe
Q psy4663 111 NEFFREDTLLK--LNIGKK----TESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLG-GNQGEY-RLKERFFIRRIEILD 182 (966)
Q Consensus 111 ~~li~eG~l~k--i~~~~~----~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g-~~~~~y-~~k~~i~l~~~~I~d 182 (966)
....+||.|.+ +..+++ +.=+.|||.|=.+.|.|.|-..... . .| ...+.| .-.+.|+|.+..|.-
T Consensus 6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~-~-----~~~~~~~~~~~~~~~i~L~~a~v~~ 79 (124)
T 3pp2_A 6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSA-A-----GGLRQPSKFSTPEYTVELRGATLSW 79 (124)
T ss_dssp ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---------CBCCGGGGCSEEEEEECTTCEEEE
T ss_pred CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCcccc-c-----cCccCcccccCCcceEEcCCCEEEe
Confidence 35667888862 211211 1125789999999999988532110 0 00 011123 456789999888776
Q ss_pred CC-CCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 183 LP-DSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 183 ~~-d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
.. |...-+|.|+|...++..|.|+|.|.+|.+.|+.+|..++
T Consensus 80 ~~~d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI 122 (124)
T 3pp2_A 80 APKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122 (124)
T ss_dssp CCGGGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 54 5555689999998877789999999999999999998754
No 88
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=97.37 E-value=0.00026 Score=76.32 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=69.6
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccC-------ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccce-EE
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDG-------LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIE-IL 181 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~-------~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~-I~ 181 (966)
.+..+++|.|.|. +.+ +.|||.|-++ .|.|-|.... . ....-..++.|+|.++. |.
T Consensus 7 ~~~v~k~G~L~K~----K~W-kkRwFVL~~~~~~G~~~~L~YYk~~~~---~--------~~~~~~p~g~I~L~~~~~V~ 70 (264)
T 1qqg_A 7 FSDVRKVGYLRKP----KSM-HKRFFVLRAASEAGGPARLEYYENEKK---W--------RHKSSAPKRSIPLESCFNIN 70 (264)
T ss_dssp --CEEEEEEEECT----TTC-CEEEEEEECCBTTTBSSEEEEESSHHH---H--------HTTCSCCSEEEEGGGEEEEE
T ss_pred CCCccEEEEEEEC----CCC-EeEEEEEECCCCCCCCCEEEEECCCcc---c--------cccccCcceEEEeeceEEEE
Confidence 4578899999886 223 4799999998 8888875311 0 00012457788998876 43
Q ss_pred eCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 182 DLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 182 d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
...+ ..-+|+|.|... ++.|.|+|.|.+|.+.||++|..+....
T Consensus 71 ~~~~-~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 71 KRAD-SKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp EECC-SSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred eccC-CCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 3333 346789999977 6679999999999999999998765544
No 89
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=97.29 E-value=0.00038 Score=65.58 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=60.4
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
+.|||.|=++.|.|.|....... + .+..|.-.+.|+|.+..|.-..|...-+|.|+|...++..|.|+|.|.
T Consensus 33 k~rw~vL~~~~L~~yk~~~~~~~-------~-~~~~~~~~~~i~L~~~~v~~~~d~~kr~~~F~l~t~~~~~~lfqA~s~ 104 (122)
T 1dro_A 33 DKVYMAAKAGRISFYKDQKGYKS-------N-PELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDD 104 (122)
T ss_dssp EEEEEEESSSCCBEESSSSHHHH-------C-TTCCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSS
T ss_pred cEEEEEEECCEEEEEeCCccccc-------C-CCcccCCCceEECCCCEEEeCCCCCCCCeEEEEEEcCCCEEEEECCCH
Confidence 57999999999998886421100 0 000111124567777666555554456899999977677899999999
Q ss_pred hhhhhhHHHHHHHhh
Q psy4663 211 EDKNNWMADLIMLNT 225 (966)
Q Consensus 211 eeK~~W~~~L~~l~~ 225 (966)
+|.+.||.+|.....
T Consensus 105 ~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 105 TEMSQWVTSLKAQSD 119 (122)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987544
No 90
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.00 E-value=0.0024 Score=69.13 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=63.9
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-----CCCC
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-----SDDY 189 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-----~~~~ 189 (966)
++|-|.|-..+.+.+ +.|||.|=++.|.|.|...... ..+.. .-+.+.++.|....+ ....
T Consensus 170 ~~G~L~k~~~~~k~W-kkR~fvL~~~~L~yyk~~~~~~----------~~~~i---~l~~l~~~~v~~~~~~~~~~~~~~ 235 (291)
T 3tca_A 170 LEGALYLKEDGKKSW-KRRYFLLRASGIYYVPKGKTKT----------SRDLA---CFIQFENVNIYYGIQCKMKYKAPT 235 (291)
T ss_dssp CEEEEEEECTTSSCE-EEEEEEECSSEEEECCTTCCSS----------TTTCE---EEEEGGGCEEEEECSHHHHHCCSS
T ss_pred eEEEEEEeCCCCCCc-eEEEEEEeCCEEEEEecCcccc----------ccCce---eeccceeEEEEecCccccccCCCC
Confidence 578888874443433 5899999999999987642210 00111 123444555544332 2235
Q ss_pred cceEEEEeCCC-----ccEEEEeCCchhhhhhHHHHHHHhhhh
Q psy4663 190 KNAFQIVPRCG-----SPVILIANSPEDKNNWMADLIMLNTKS 227 (966)
Q Consensus 190 ~naF~I~~~~~-----~~~~l~aks~eeK~~W~~~L~~l~~~~ 227 (966)
+|+|.|...+. ..|.|+|.|.++...||++|..+....
T Consensus 236 ~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~ 278 (291)
T 3tca_A 236 DHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGK 278 (291)
T ss_dssp SCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTH
T ss_pred CeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcch
Confidence 78999986432 239999999999999999998765443
No 91
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.66 E-value=0.00028 Score=92.53 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=10.1
Q ss_pred hhhhHhHHHHHHHHHcc
Q psy4663 20 LWHCFLYFDYIRILRGL 36 (966)
Q Consensus 20 VQRi~kY~lLLk~L~k~ 36 (966)
..+|.+....|++++..
T Consensus 272 l~~II~~N~~Lk~~~~~ 288 (1752)
T 3h0g_A 272 LSDIIKANANVRRCEQE 288 (1752)
T ss_dssp HHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666666666655544
No 92
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0026 Score=60.87 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=43.4
Q ss_pred EEEeeccceEEeCCCCCCCcceEEEEeC---CCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 171 ERFFIRRIEILDLPDSDDYKNAFQIVPR---CGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 171 ~~i~l~~~~I~d~~d~~~~~naF~I~~~---~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+.|+|++++|+...+.+.-+++|++... +.+.|.|.|.|+++-++||++++..-..
T Consensus 55 g~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAskg 113 (137)
T 2ys3_A 55 QQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113 (137)
T ss_dssp CCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred eEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHhccC
Confidence 4588999999877666667888877633 2345999999999999999999765444
No 93
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.23 E-value=0.00075 Score=88.64 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy4663 286 KLVERL 291 (966)
Q Consensus 286 kLIe~L 291 (966)
.||..+
T Consensus 634 ~li~~i 639 (1752)
T 3h0g_A 634 GLVHTI 639 (1752)
T ss_dssp CHHHHS
T ss_pred cHHHHH
Confidence 344433
No 94
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=96.21 E-value=0.0052 Score=69.76 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=68.6
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEe--ccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFL--FDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD 188 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FL--Fd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~ 188 (966)
..=++||-|.|-....+. -+.|||.| =++.|.|-|... .-.-+|.|.|.++.++...+...
T Consensus 144 ~~~~keG~L~KrG~~~k~-WkrRwFVL~~~~~~L~Yy~~~~----------------~~~p~g~I~L~~~~~~~~~~~~~ 206 (386)
T 3lju_X 144 SAGYREGFLWKRGRDNGQ-FLSRKFVLTEREGALKYFNRND----------------AKEPKAVMKIEHLNATFQPAKIG 206 (386)
T ss_dssp HSSEEEEEEEEECSSSCC-EEEEEEEEETTTTEEEEEC---------------------CCSEEEEGGGEEEEECHHHHT
T ss_pred cccccccceeeeccccCC-ceEEEEEEEcCCCEEEEECCCC----------------ccCcccEEEeeccEEEEcccccC
Confidence 334789999998433333 35799999 688888887632 23456788999887776433224
Q ss_pred CcceEEEEe---CCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 189 YKNAFQIVP---RCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 189 ~~naF~I~~---~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
-.|+|+|.. .....|.|+|.|.+|...|+++|......
T Consensus 207 ~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~~ 247 (386)
T 3lju_X 207 HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFH 247 (386)
T ss_dssp STTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcccc
Confidence 578899972 22345999999999999999999876443
No 95
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.031 Score=59.63 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=68.1
Q ss_pred eeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-----CC
Q psy4663 114 FREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-----DD 188 (966)
Q Consensus 114 i~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-----~~ 188 (966)
-.+|-|.+-..+.++ =+.|||+|=++.|.|.++...+ ..-.+..-+.|+++.|-...+. ..
T Consensus 133 ~~~G~L~~ke~~~K~-WkkRyfvLr~sgLy~~~k~~sk-------------~~r~l~~~~~L~~~~vy~~~~~kKk~kaP 198 (256)
T 3hk0_A 133 EIQGFLHVKELGKKS-WKKLYVCLRRSGLYCSTKGTSA-------------APRHLQLLADLEDSNIFSLIAGRKQYNAP 198 (256)
T ss_dssp EEEEEEEEECTTSSC-EEEEEEEEETTEEEEESSTTCC-------------CGGGEEEEECCTTEEEEEESSTHHHHCCS
T ss_pred cceeEEEEecCCCCc-ceEEEEEEeCCEEEEEecCCCC-------------ccccceEEEEcCCCEEEEecccccccCCC
Confidence 357777655323333 3689999999999988874321 1112223357888888765532 12
Q ss_pred CcceEEEEeCCCc-----cEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 189 YKNAFQIVPRCGS-----PVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 189 ~~naF~I~~~~~~-----~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
.+++|.|.+.... .+.|+|.++++...||++|..++...-
T Consensus 199 t~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g~~ 243 (256)
T 3hk0_A 199 TDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGML 243 (256)
T ss_dssp SSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHTHH
T ss_pred CCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhhHH
Confidence 3689999855321 289999999999999999988765544
No 96
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=95.99 E-value=0.012 Score=55.18 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=58.7
Q ss_pred eeccEEEeecCC-CC-CccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccce-EEeCCC------
Q psy4663 115 REDTLLKLNIGK-KT-ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIE-ILDLPD------ 185 (966)
Q Consensus 115 ~eG~l~ki~~~~-~~-~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~-I~d~~d------ 185 (966)
+||-|.+-..++ ++ .=+.|||.|=++.|.|.+-...+ ..-..++.|+|+.+. |..+..
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~-------------~~~~p~~~Idl~~~~~V~~V~~~d~i~~ 69 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDK-------------EQSNPYMVLDIDKLFHVRPVTQTDVYRA 69 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHH-------------HTTCCSEEECGGGEEEEEECCTTTCSSS
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCc-------------ccCCceEEEECcccEEEEEccccccccc
Confidence 467776421122 33 23578888878888887642110 001223466776443 222222
Q ss_pred -CCCCcceEEEEeCC-----CccEEEEeCCchhhhhhHHHHHHHh
Q psy4663 186 -SDDYKNAFQIVPRC-----GSPVILIANSPEDKNNWMADLIMLN 224 (966)
Q Consensus 186 -~~~~~naF~I~~~~-----~~~~~l~aks~eeK~~W~~~L~~l~ 224 (966)
..+..+.|+|...+ ...+.|.|.|.+|+++|+.+|....
T Consensus 70 ~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i 114 (117)
T 2rov_A 70 DAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKI 114 (117)
T ss_dssp CTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred ccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 23357789998643 3459999999999999999997644
No 97
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=95.96 E-value=0.024 Score=61.24 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred eeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC-----CCCC
Q psy4663 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD-----SDDY 189 (966)
Q Consensus 115 ~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d-----~~~~ 189 (966)
.+|.|.+-..+.+++ +.|||+|=++.|.|.++...+. .=.+.+-+.|+++.|-...+ ...-
T Consensus 160 ~~G~L~~k~~~~k~W-kkRyfvLr~sgLyy~~K~~sk~-------------~r~l~~l~~L~~~~VY~~~~~kkk~kaPt 225 (281)
T 4gmv_A 160 IEGVLWLKDDGKKSW-KKRYFLLRASGIYYVPKGKAKV-------------SRDLVCFLQLDHVNVYYGQDYRNKYKAPT 225 (281)
T ss_dssp CEEEEEEECTTSSCE-EEEEEEECSSCEEEC----------------------CCEEEECGGGCEEEEESSHHHHTCCSC
T ss_pred cEEEEEEECCCCCCC-eEEEEEEeCCEEEEEeCCCCCc-------------cccceEEEEcCCcEEEEecccccccCCCC
Confidence 467776553333433 6899999999999887642211 11122335677777766442 2234
Q ss_pred cceEEEEeCCC-----ccEEEEeCCchhhhhhHHHHHHHhhhhhh
Q psy4663 190 KNAFQIVPRCG-----SPVILIANSPEDKNNWMADLIMLNTKSMF 229 (966)
Q Consensus 190 ~naF~I~~~~~-----~~~~l~aks~eeK~~W~~~L~~l~~~~~~ 229 (966)
.++|.|.+... ..+.|+|.+++++..||.+|..+.....+
T Consensus 226 ~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~g~~l 270 (281)
T 4gmv_A 226 DYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQL 270 (281)
T ss_dssp SCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHHTHHH
T ss_pred CcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhhCcHH
Confidence 78999986422 23999999999999999999886655443
No 98
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=95.90 E-value=0.018 Score=56.60 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=62.9
Q ss_pred HHHHHhhhccCCcc----CCCCcccceEeeeccEEEeecCCCC---CccceEEEeccCceEEeecCCCCcccccccCCCC
Q psy4663 90 KTNELSKTVDGWTS----VDIGQCCNEFFREDTLLKLNIGKKT---ESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGG 162 (966)
Q Consensus 90 kl~eiQ~~I~gw~g----~di~~~~~~li~eG~l~ki~~~~~~---~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~ 162 (966)
.|.++|-+++|-.. .||++ -=+ ..|.|... +.++ +.-.||.|.|.|..|++-++... +.|
T Consensus 23 aL~~Lev~leg~~~~~~~~~it~-iPe--L~dyLk~~--~pk~~tLKgyKryWFv~kd~~LsyYKskEe-------~~g- 89 (173)
T 4f7h_A 23 ALSDLEITLEGGKTSTILGDITS-IPE--LADYIKVF--KPKKLTLKGYKQYWCTFKDTSISCYKSKEE-------SSG- 89 (173)
T ss_dssp ----------------CCCCGGG-TTC--EEEEEEEE--CCBTTBCCCCEEEEEEEETTEEEEESCGGG-------CSS-
T ss_pred HHHHhHHhhccCcccccchhhhc-Chh--hHhHHHhh--cchhcccccceeEEEEEeCCEEEEEcCHhH-------hcC-
Confidence 36777777777432 23332 112 23566544 2222 23457788887777776553211 001
Q ss_pred CCCceEEeEEEeeccceEEeCCCCCCCcceEEEEe--C-CCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVP--R-CGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 163 ~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~--~-~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.=.++|+|++++|+-..+...-|+++++.. . +...+.|-|.|+++-.+||++++-.-..
T Consensus 90 -----eP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLAskG 151 (173)
T 4f7h_A 90 -----TPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASKG 151 (173)
T ss_dssp -----CCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred -----CCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhhccC
Confidence 124678899999996555555676666543 2 2344999999999999999999664443
No 99
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=95.84 E-value=0.099 Score=50.89 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=74.7
Q ss_pred HHHHHhhhccCCccCCCCcccceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEE
Q psy4663 90 KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRL 169 (966)
Q Consensus 90 kl~eiQ~~I~gw~g~di~~~~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~ 169 (966)
.+.+.|+.=.-|..- . .+...|++|.+.|-.+ - ..+.|+|.|-+.-.+|+--- .....
T Consensus 32 ~~~~~q~~~~~w~~f--~-~ge~Ilk~G~v~KrkG-l--~~kkR~liLT~~PrL~Yvdp----------------~~~~~ 89 (151)
T 1w1g_A 32 LLLEKQAGGNPWHQF--V-ENNLILKMGPVDKRKG-L--FARRRQLLLTEGPHLYYVDP----------------VNKVL 89 (151)
T ss_dssp HHHHHHHHHCTTGGG--T-TTCCEEEEEEEEEEET-T--EEEEEEEEEETTTEEEEEET----------------TTTEE
T ss_pred Hhhhhccccchhhcc--C-CCCcEEEEEEEEeccc-C--cceeEEEEEcCCceEEEEcC----------------ccccc
Confidence 345556544457653 2 2457788999988632 2 12489999998877776431 23588
Q ss_pred eEEEeecc-ceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 170 KERFFIRR-IEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 170 k~~i~l~~-~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
||.|+++. +.|+-..|. .|.|... +++|.|.+. ..+.++|+++|..+...
T Consensus 90 KGeIpls~~l~ve~k~~~-----~F~I~Tp-~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 90 KGEIPWSQELRPEAKNFK-----TFFVHTP-NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp EEEECCCTTCEEEESSSS-----EEEEEET-TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred cceEecCCCeeEEEcCCC-----EEEEECC-CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 99999995 345444433 7999888 578999997 77899999999876543
No 100
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=95.67 E-value=0.004 Score=79.46 Aligned_cols=43 Identities=56% Similarity=0.830 Sum_probs=40.2
Q ss_pred CCCCchhhHHHHHHHHHhhccccCccccchhhHhhhHhhhhcccC
Q psy4663 921 APGNDKWAMHEAKEAIEKSKKKISCLVLPVEKIHYLLSKDVLQYS 965 (966)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (966)
|+|||+||+.|||++++++++| ..|..||++||.+| |...+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~pv~~~~~~l-~~~~~~r 121 (1049)
T 3ksy_A 79 PHPIDKWAIADAQSAIEKRKRR-NPLSLPVEKIHPLL-KEVLGYK 121 (1049)
T ss_dssp CTTHHHHHHHHHHHHHTTCCCS-SSCSSCHHHHHHHH-HHHHCSC
T ss_pred CCchHHHHHHHHHHhhhccccc-CCccccHHHHHHHh-hcccccc
Confidence 7999999999999999999999 89999999999999 8877664
No 101
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=95.47 E-value=0.011 Score=63.89 Aligned_cols=85 Identities=11% Similarity=0.181 Sum_probs=60.8
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCc
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSP 210 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~ 210 (966)
+.||+.|=++.|.|-|...... ......-++.|.|.+..++...|...-+|.|+|...++..|.|+|.+.
T Consensus 40 kk~w~VLkg~~L~fYKde~~~~----------~~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g~~yLFQA~s~ 109 (279)
T 3a8n_A 40 KHYWVSLKGCTLFFYETDGRSG----------IDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQ 109 (279)
T ss_dssp EEEEEEEETTEECCBCCC------------------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCH
T ss_pred eEEEEEEeCCEEEEEecccccc----------cccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCCCEEEEeCCCH
Confidence 4788888888888887642210 001223345678888888755554456899999988888899999999
Q ss_pred hhhhhhHHHHHHHhh
Q psy4663 211 EDKNNWMADLIMLNT 225 (966)
Q Consensus 211 eeK~~W~~~L~~l~~ 225 (966)
+|-+.|+.+|.....
T Consensus 110 eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 110 TELENWITAIHSACA 124 (279)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999976443
No 102
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=95.13 E-value=0.022 Score=65.44 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=63.4
Q ss_pred ceEeeeccEEEeecCCCCCccceEEEec-cCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC---CC
Q psy4663 111 NEFFREDTLLKLNIGKKTESTERVCFLF-DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP---DS 186 (966)
Q Consensus 111 ~~li~eG~l~ki~~~~~~~~~eR~~FLF-d~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~---d~ 186 (966)
...++||-|.|....-+.+ +.|||.|- ++.|+|-|.... =..++.++|.++.+.++. ..
T Consensus 4 ~~v~keG~L~K~g~~~k~W-k~r~fvL~~~~~l~yyk~~~~----------------~~~~~~i~l~~~~~~~~~~~~~~ 66 (446)
T 4ejn_A 4 VAIVKEGWLHKRGEYIKTW-RPRYFLLKNDGTFIGYKERPQ----------------DVDQREAPLNNFSVAQCQLMKTE 66 (446)
T ss_dssp CCEEEEEEEEEEETTTTEE-EEEEEEEETTSBEEEESSCC-----------------------CCCGGGBCTTCEEEEEC
T ss_pred ceEEEEeeEEeeccccccc-cceEEEEeeCCEEEEEecCCC----------------CCccCcccccCccccceeecCCC
Confidence 3579999999984333333 47888886 789998886422 122345666665443211 11
Q ss_pred CCCcceEEEEeCCCccE---EEEeCCchhhhhhHHHHHHHhh
Q psy4663 187 DDYKNAFQIVPRCGSPV---ILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 187 ~~~~naF~I~~~~~~~~---~l~aks~eeK~~W~~~L~~l~~ 225 (966)
..-+|.|+|...+...+ ++.+.+.|++..|+.+|.....
T Consensus 67 ~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 67 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 22467999987755444 7999999999999999987644
No 103
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.73 E-value=0.21 Score=47.03 Aligned_cols=103 Identities=9% Similarity=0.117 Sum_probs=59.5
Q ss_pred ceEeeeccEEEeec-CCCCCccceEEEeccCceEEeecCCCCcccccccCC-CC-CCCceEEeEEEeecc-ceEEeCCCC
Q psy4663 111 NEFFREDTLLKLNI-GKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPL-GG-NQGEYRLKERFFIRR-IEILDLPDS 186 (966)
Q Consensus 111 ~~li~eG~l~ki~~-~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~-g~-~~~~y~~k~~i~l~~-~~I~d~~d~ 186 (966)
...+|+|.|.+... .-+++=+.||+.|+.+-- .+..+|-.-... .. .+. .-+..|.|++ +.|....+.
T Consensus 10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~------~GvaRLE~yd~~ek~~r~~--~~rrVIrLsdCisV~~~~~e 81 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSD------CALARLELQEGPEKPRRCE--AARKVIRLSDCLRVAEAGGE 81 (127)
T ss_dssp CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSS------SSCCEEEEECCCSCSSSCS--CCEEEECGGGEEEEEECCSC
T ss_pred CccccceEEEecccchhhhhhheeEEEEecCCC------CCceeeeeeeccCccccCC--CCceEEEhhhCCeEecccCc
Confidence 46778999997753 223333578888875421 111111100000 00 001 1235566664 355554332
Q ss_pred ---CCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHH
Q psy4663 187 ---DDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 187 ---~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l 223 (966)
..-.++|.|... ++.|.|+|.+ +|+..||.+|..+
T Consensus 82 ~~~pk~~~aF~l~T~-er~~~laAe~-~E~~~Wi~~ic~~ 119 (127)
T 2d9w_A 82 ASSPRDTSAFFLETK-ERLYLLAAPA-AERGDWVQAICLL 119 (127)
T ss_dssp SSSCSSCEEEEEEES-SCEEEEEECH-HHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEEeC-CcEEEEEeCc-HHHHHHHHHHHHH
Confidence 234689999999 6789999996 5899999999664
No 104
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=94.57 E-value=0.058 Score=51.47 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=61.2
Q ss_pred eEeeeccEE-EeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccce-EEeCCCCC--
Q psy4663 112 EFFREDTLL-KLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIE-ILDLPDSD-- 187 (966)
Q Consensus 112 ~li~eG~l~-ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~-I~d~~d~~-- 187 (966)
.++++|+.. |+. .+++...|+|.|-++..++-... ... ..-..+++|.|++|. |....+++
T Consensus 11 ~~L~~Gt~l~K~~--~~~~~k~r~f~l~~~~~~~w~~s-~~~------------~~~~~~~~i~i~~I~eIr~G~~s~~~ 75 (131)
T 1mai_A 11 QALLKGSQLLKVK--SSSWRRERFYKLQEDCKTIWQES-RKV------------MRSPESQLFSIEDIQEVRMGHRTEGL 75 (131)
T ss_dssp HHHHHCEEEEEES--SSSCEEEEEEEECTTSSEEEECC-CCT------------TCCTTTTEEEGGGEEEEEESSCSHHH
T ss_pred HHHHcCCeEEEEC--CCCcceeEEEEECCCCCEEEeCC-cCC------------CCCCcCcEEEHhhhHHHHCCCCCHHH
Confidence 345566664 884 33323478888888776663320 000 000124567777774 33333221
Q ss_pred -------CCcceEEEEeCCC-ccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 188 -------DYKNAFQIVPRCG-SPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 188 -------~~~naF~I~~~~~-~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.-..+|.|...+. +++-|+|.|.+|-+.|+..|..+..+
T Consensus 76 ~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 76 EKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp HHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred HhhhhcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 2356899998865 56999999999999999999876544
No 105
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=94.05 E-value=0.11 Score=50.71 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=55.2
Q ss_pred cceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeC---CCccEEEEe
Q psy4663 131 TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPR---CGSPVILIA 207 (966)
Q Consensus 131 ~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~---~~~~~~l~a 207 (966)
-.||.|.|.|.-|++-+.... + .-.-.++|+|++++|+-..+...-|++|++.-. +...+.|-|
T Consensus 45 fKryWfv~kDt~LsyYKSkEe-------~------~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~Lrc 111 (165)
T 4bbk_A 45 CKQYWFVFKDTSIAYFKNKEL-------E------QGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRC 111 (165)
T ss_dssp CEEEEEEEETTEEEEESSGGG-------T------TSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred ceeEEEEEeCCEEEEEcCHHH-------h------cCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeec
Confidence 357888888877777553210 0 012345688999999855444456777777422 233489999
Q ss_pred CCchhhhhhHHHHHHHhh
Q psy4663 208 NSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 208 ks~eeK~~W~~~L~~l~~ 225 (966)
.|+++-.+||++++-.-.
T Consensus 112 dsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 112 DHEDQYARWMAACILASK 129 (165)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhhccc
Confidence 999999999999865433
No 106
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=89.24 E-value=0.74 Score=43.52 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 188 DYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 188 ~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
+-.|.|-|....+..|+|.|.+.++++.|+++|..|...
T Consensus 93 D~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 93 EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp CCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 356889888775557999999999999999999877543
No 107
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=78.83 E-value=54 Score=40.06 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=61.3
Q ss_pred EeeeccEEEeecCC-CCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCC-CCCc
Q psy4663 113 FFREDTLLKLNIGK-KTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDS-DDYK 190 (966)
Q Consensus 113 li~eG~l~ki~~~~-~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~-~~~~ 190 (966)
.++.|-|+....+. ++++.+.||.|=..-|-.-|-... .. -|-.++|+++++.|.+++ ..-+
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 603 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEE--------------KE--KKYMLSVDNLKLRDVEKGFMSSK 603 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTC--------------CC--EEEEEECTTEEEEEC-------C
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhh--------------hc--ccccccccccccchhhhcccccc
Confidence 67778877543222 334557888887777766555321 11 344578899999998864 2347
Q ss_pred ceEEEEeCCCc-------cEEEEeCCchhhhhhHHHHHH
Q psy4663 191 NAFQIVPRCGS-------PVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 191 naF~I~~~~~~-------~~~l~aks~eeK~~W~~~L~~ 222 (966)
+.|.|.+.+++ .+.|.|.|.|++..|.+.+.+
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 642 (772)
T 3zvr_A 604 HIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 642 (772)
T ss_dssp EEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccccCCccccccchhhhhhhhccccccchhhHHhhhh
Confidence 88999877664 389999999999999987643
No 108
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=71.98 E-value=11 Score=40.28 Aligned_cols=62 Identities=11% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 163 ~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
.++.|+.+..-+|+++..+|..-+. ..+|.|.- ++.|...|.+..||..++..|.++-.+-+
T Consensus 160 ~ngsFsIGKTW~L~ELk~Id~~~~~--~~gF~LTl--~K~YyW~A~s~kER~~FI~sLvKiy~KYt 221 (320)
T 3a58_A 160 SDGSFQIGRTWQLTELVRVEKDLEI--SEGFILTM--SKKYYWETNSAKERTVFIKSLITLYIQTF 221 (320)
T ss_dssp GGGCEEEEEEEEGGGCCEEEECSSC--TTEEEEES--SSEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceEecceechhhhhhhhcccCC--CCceEEEe--CCceEEecCCHHHHHHHHHHHHHHHHHHc
Confidence 3467999999999999998832111 14687765 45799999999999999999988654443
No 109
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=71.75 E-value=9.6 Score=37.67 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCCceEEeEEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhh
Q psy4663 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTK 226 (966)
Q Consensus 163 ~~~~y~~k~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~ 226 (966)
.++.|+.+..-+|+++..++..+.. ..+|.|.- ++.|.-.|.+..||..++..|.++-.+
T Consensus 90 ~ngsfsiGkTW~L~ELk~Ie~~~~~--~~gF~ltl--~K~Y~W~a~s~~Er~~FI~sL~K~y~k 149 (171)
T 3hie_A 90 SDGSFQIGRTWQLTELVRVEKDLEI--SEGFILTM--SKKYYWETNSAKERTVFIKSLITLYIQ 149 (171)
T ss_dssp TTSCEEEEEEEEGGGCCEEEECSSC--TTEEEEES--SSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEeeeeeecccceeeeccCCC--CCcEEEEe--CCeEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999886532 34687765 357999999999999999999885443
No 110
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=65.87 E-value=1.3 Score=50.61 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhh
Q psy4663 353 RVLNVLRHWVDH 364 (966)
Q Consensus 353 RVl~vL~~Wi~~ 364 (966)
+.+..++.|++.
T Consensus 190 ~al~~~~~l~~~ 201 (449)
T 3iot_A 190 AGLTFLVDLIKN 201 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 345555555554
No 111
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=65.66 E-value=7.5 Score=40.18 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=37.0
Q ss_pred EEEeeccceEEeCCCCCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHH
Q psy4663 171 ERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLI 221 (966)
Q Consensus 171 ~~i~l~~~~I~d~~d~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~ 221 (966)
+.+.+..+...-..+...-.+.|.|... ++.+.|+|.|.+|+..|+.+|.
T Consensus 176 g~~~~~~i~s~~~~~~~~~~~~f~iit~-~r~~~~~a~s~~e~~~Wi~~lq 225 (228)
T 3tfm_A 176 GTLDVGLIDSVCASDSPDRPNSFVIITA-NRVLHCNADTPEEMHHWITLLQ 225 (228)
T ss_dssp EEEEGGGEEEEEECCCSSCTTEEEEEET-TEEEEEECSSHHHHHHHHHHHC
T ss_pred ccCChhheeccccCCCCCCCCcEEEEeC-CceEEEEcCCHHHHHHHHHHHh
Confidence 4455555444444444456789999887 6679999999999999999883
No 112
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=61.18 E-value=14 Score=36.82 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=39.8
Q ss_pred EEEeeccceEEeC-CCCCCCcceEEEEeCCCcc-EEEEeCCchhhhhhHHHHHH
Q psy4663 171 ERFFIRRIEILDL-PDSDDYKNAFQIVPRCGSP-VILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 171 ~~i~l~~~~I~d~-~d~~~~~naF~I~~~~~~~-~~l~aks~eeK~~W~~~L~~ 222 (966)
..|+|.=..|+.. .-+|.-.|+|||.+.|+.+ .+|.|++..+=..|+++|..
T Consensus 121 ~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~s 174 (178)
T 2adz_A 121 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQA 174 (178)
T ss_dssp EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHH
Confidence 4466665555543 2334457899999998876 99999999999999999865
No 113
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=59.36 E-value=4.3 Score=41.15 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCCCchhhHHHHHHHHHhhcc---------ccCccccchhhHhhhHhhh
Q psy4663 921 APGNDKWAMHEAKEAIEKSKK---------KISCLVLPVEKIHYLLSKD 960 (966)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 960 (966)
|..++|||+.+...|+.+... | ..+.+|+.+||.+|++.
T Consensus 71 pgeLak~Av~eG~kAv~k~~~sk~~~s~s~r-agl~fPv~ri~R~lk~~ 118 (192)
T 2jss_A 71 PGELAKHAVSEGTRAVTKYSSSTQAQSSSAR-AGLQFPVGRIKRYLKRH 118 (192)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCSSSCHHHH-SSCCSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccccccc-CCCcCCHHHHHHHHHhc
Confidence 457899999999999976522 3 56999999999999775
No 114
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=57.91 E-value=17 Score=38.57 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=40.5
Q ss_pred EEEeeccceEEeCC-CCCCCcceEEEEeCCCcc-EEEEeCCchhhhhhHHHHHHH
Q psy4663 171 ERFFIRRIEILDLP-DSDDYKNAFQIVPRCGSP-VILIANSPEDKNNWMADLIML 223 (966)
Q Consensus 171 ~~i~l~~~~I~d~~-d~~~~~naF~I~~~~~~~-~~l~aks~eeK~~W~~~L~~l 223 (966)
..++|.-..|+... .+|.-.|+|+|...|+.+ ++|.|++.++=..|+++|...
T Consensus 206 ~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~ 260 (263)
T 1z87_A 206 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQ 260 (263)
T ss_dssp EEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHH
Confidence 35566666666433 234457899999998776 899999999999999999664
No 115
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=57.86 E-value=12 Score=38.29 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=33.5
Q ss_pred ceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 191 NAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 191 naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
.+|.|....+..+.|+|.|+++...|++-|.+|..+.|
T Consensus 116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~Llg~~~ 153 (203)
T 3a98_B 116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGKDM 153 (203)
T ss_dssp GEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHTTCCC
T ss_pred eEEEEecCCCceEEEecCCHHHHHHHHHHHHHHhcCCC
Confidence 58999988666799999999999999999999977665
No 116
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=56.84 E-value=51 Score=30.87 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=54.2
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccC-ceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEe-CCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDG-LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD-LPDSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~-~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d-~~d~~ 187 (966)
.+..|+||-+...+...+-+ -||+|-.|. .+.+-+-.. +.+| || -|+|.++--+. ..+..
T Consensus 5 ~s~vlkeGW~VH~t~~d~~r--KRHYWrLD~K~Itlf~~e~--------------~~~~-yk-eIpL~eIl~v~~~~~~~ 66 (125)
T 2coa_A 5 SSGTLREGWVVHYSNKDTLR--KRHYWRLDCKCITLFQNNT--------------TNRY-YK-EIPLSEILTVESAQNFS 66 (125)
T ss_dssp CCSCSEEEEEEECCSSSCCC--EEEEEEECSSEEEEESSSS--------------CSSC-SE-EEETTTCCEEEESCCCS
T ss_pred CCceeecceEEEEccCCccc--cceeeEecCCeEEEEecCC--------------CCce-ee-eeehhHeeccccccccc
Confidence 35778999988775433323 466665554 444444321 1111 22 27887664333 32211
Q ss_pred -----CCcceEEEEeCCCccEEEEeC---C--------chhhhhhHHHHHHHh
Q psy4663 188 -----DYKNAFQIVPRCGSPVILIAN---S--------PEDKNNWMADLIMLN 224 (966)
Q Consensus 188 -----~~~naF~I~~~~~~~~~l~ak---s--------~eeK~~W~~~L~~l~ 224 (966)
...|.|||... +..|.+.+. . .+.-+.|..+|.+..
T Consensus 67 ~l~~~~~~hcFEi~T~-~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 67 LVPPGTNPHCFEIVTA-NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp SSCTTSCCEEEEEECS-SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred ccCCCCCCceEEEEeC-CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 24589999886 555666552 1 255788999997743
No 117
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=53.43 E-value=2.8 Score=55.62 Aligned_cols=15 Identities=7% Similarity=-0.214 Sum_probs=8.5
Q ss_pred hhhHhHHHHHHHHHc
Q psy4663 21 WHCFLYFDYIRILRG 35 (966)
Q Consensus 21 QRi~kY~lLLk~L~k 35 (966)
.+|.+....|++++.
T Consensus 267 ~~II~~N~~Lk~~~~ 281 (1733)
T 1twf_A 267 ADILKANISLETLEH 281 (1733)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566555665554
No 118
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=45.35 E-value=4.4 Score=53.74 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=0.6
Q ss_pred cCChhh
Q psy4663 528 LNNFNG 533 (966)
Q Consensus 528 L~NFns 533 (966)
||-||.
T Consensus 1081 LnTFHf 1086 (1733)
T 1twf_A 1081 LNTFHF 1086 (1733)
T ss_dssp C-----
T ss_pred cccccc
Confidence 555553
No 119
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.93 E-value=65 Score=31.00 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred cccCHHHHHHHHccccCCChhHH--HHHhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHH
Q psy4663 280 KGATLYKLVERLTYHIYADPAFV--RTFLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLN 356 (966)
Q Consensus 280 kagTL~kLIe~Lt~~~~~D~~Fv--~~FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~ 356 (966)
.+.+++++|++.|+....++++- -.|--.- ..-..+.+.+..|..|.+..++ .++++-+.
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~-----------------~v~l~AL~ 70 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE-----------------WEAIQALT 70 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSH-----------------HHHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 45789999999998765444432 1111111 1225578888888888764322 26788899
Q ss_pred HHHHHhhhcccccc
Q psy4663 357 VLRHWVDHHFYDFE 370 (966)
Q Consensus 357 vL~~Wi~~~~~DF~ 370 (966)
+|..=+.+|...|.
T Consensus 71 LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 71 VLETCMKSCGKRFH 84 (149)
T ss_dssp HHHHHHHHCCHHHH
T ss_pred HHHHHHHhcCHHHH
Confidence 99999999988885
No 120
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.59 E-value=1.2e+02 Score=28.44 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=53.6
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEecc-CceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCC-CCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFD-GLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLP-DSD 187 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd-~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~-d~~ 187 (966)
++..|+||=+...+....-+ -||++-.| +.+.+-+-.. +++| ||+ |+|..+--..-. +.+
T Consensus 5 ~s~vlkeGWmVH~t~~d~~r--KRHYWrLD~K~Itlf~~e~--------------~~k~-yke-IpLseIL~v~~~~~~~ 66 (129)
T 2d9z_A 5 SSGMVKEGWMVHYTSRDNLR--KRHYWRLDSKCLTLFQNES--------------GSKY-YKE-IPLSEILRISSPRDFT 66 (129)
T ss_dssp CTTSEEEEEEEEEESSCCCC--EEEEEEEESSCEEEESCSS--------------CCSC-CCE-ECTTTCCEECCTTCCC
T ss_pred CCceeecceEEEEccCCccc--cceeeEecCCeEEEEecCC--------------CCce-ece-eeHHHhcccccccCcc
Confidence 45788999988775443322 45555444 4444444321 1111 222 788876443332 211
Q ss_pred -----CCcceEEEEeCCCccEEEEeCC---------------chhhhhhHHHHHHHh
Q psy4663 188 -----DYKNAFQIVPRCGSPVILIANS---------------PEDKNNWMADLIMLN 224 (966)
Q Consensus 188 -----~~~naF~I~~~~~~~~~l~aks---------------~eeK~~W~~~L~~l~ 224 (966)
...|.|||... +-.|.+.+.. .+.-+.|..+|.+..
T Consensus 67 ~~~~~~~phcFEi~T~-~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL 122 (129)
T 2d9z_A 67 NISQGSNPHCFEIITD-TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL 122 (129)
T ss_dssp CSSSCSCCCSEEEECS-SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCceEEEEEC-CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence 13489999875 4445554421 477778999997743
No 121
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.38 E-value=68 Score=31.27 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=47.2
Q ss_pred ccccCHHHHHHHHccccCCChhHH--HHHhhhcc-cccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHH
Q psy4663 279 IKGATLYKLVERLTYHIYADPAFV--RTFLTTYR-SFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVL 355 (966)
Q Consensus 279 IkagTL~kLIe~Lt~~~~~D~~Fv--~~FLlTYR-sFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl 355 (966)
.....++++|++.|+....++++. -.+--.-+ .-..+.+.+..|..|....++ .+|++-+
T Consensus 11 ~~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~-----------------~vql~AL 73 (163)
T 1x5b_A 11 FTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVP-----------------HVALQAL 73 (163)
T ss_dssp CCCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSH-----------------HHHHHHH
T ss_pred cCCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH-----------------HHHHHHH
Confidence 344568999999998755444432 11111111 124577777777777754321 2677888
Q ss_pred HHHHHHhhhcccccc
Q psy4663 356 NVLRHWVDHHFYDFE 370 (966)
Q Consensus 356 ~vL~~Wi~~~~~DF~ 370 (966)
.+|..=|.+|...|.
T Consensus 74 ~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 74 TLLGACVANCGKIFH 88 (163)
T ss_dssp HHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhHHHH
Confidence 888888998877775
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.89 E-value=57 Score=33.55 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred ccCHHHHHHHHccccCCChhH--HHHHhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHH
Q psy4663 281 GATLYKLVERLTYHIYADPAF--VRTFLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNV 357 (966)
Q Consensus 281 agTL~kLIe~Lt~~~~~D~~F--v~~FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~v 357 (966)
..++++||++.|+....++++ +-.+--.- ..-..+.+.+..|..|.+..++ .+|++-+.+
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~-----------------~v~l~aL~L 68 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNP-----------------HVALYALEV 68 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSH-----------------HHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHH
Confidence 468999999999876544433 11111111 1235577888888888764322 266777888
Q ss_pred HHHHhhhccccccc---CHHHHHHHHHHH
Q psy4663 358 LRHWVDHHFYDFEQ---DAHLLEQLKLFL 383 (966)
Q Consensus 358 L~~Wi~~~~~DF~~---d~~ll~~L~~Fl 383 (966)
|..=|+++...|.. +.++++.|...+
T Consensus 69 Le~~vkNcG~~f~~eias~~fl~~l~~l~ 97 (226)
T 3zyq_A 69 MESVVKNCGQTVHDEVANKQTMEELKDLL 97 (226)
T ss_dssp HHHHHHHHCHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHhhccHHHHHHHHHHh
Confidence 88888887766642 233444444444
No 123
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=35.73 E-value=53 Score=33.78 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=54.0
Q ss_pred EeeeccEEEeecCCCCCccceEEEe-----ccCceEEe--ecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCC
Q psy4663 113 FFREDTLLKLNIGKKTESTERVCFL-----FDGLLLLC--KPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD 185 (966)
Q Consensus 113 li~eG~l~ki~~~~~~~~~eR~~FL-----Fd~~Ll~c--K~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d 185 (966)
-+.||.+..- +.|| -+.||+.| +.|.|.+- |-...+.. + +.......+++.+-++... +
T Consensus 9 ~v~eg~vk~r--~~Kk-Wk~rw~vlrk~s~~adcl~L~vYkd~~dr~k----~--~~~KaslsL~~~~GlE~g~-----~ 74 (224)
T 3ml4_A 9 ALVEGQVKLR--DGKK-WKSRWLVLRKPSPVADCLLMLVYKDKCERSK----G--LRERSSLTLEDICGLEPAL-----P 74 (224)
T ss_dssp CSEEEEEEEC-----C-CEEEEEEEECSSTTSSCEEEEEESSSHHHHS----C--CCCSEEEEECCEEEEEEEE-----E
T ss_pred eeEEEeeeee--cCCc-eeeEEEEEEcCCCchheEEEEEEcChhhhhc----C--CcccceeehHHhcCccccc-----c
Confidence 3568887665 3444 36899988 44453332 22100000 0 0122345555444433222 3
Q ss_pred CCCCcceEEEEeCCCccEEEEeCCchhhhhhHHHHHH
Q psy4663 186 SDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIM 222 (966)
Q Consensus 186 ~~~~~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~ 222 (966)
.+...|++-|+..+. .++|.+.+.|+-.+|-..|..
T Consensus 75 ldk~s~TlAIIc~d~-~~vLAFds~e~l~~W~~~l~~ 110 (224)
T 3ml4_A 75 YEGLAHTLAIICLSQ-AVMLGFDSHEAMCAWDTRIRY 110 (224)
T ss_dssp ETTEEEEEEEEESSC-EEEEECSSHHHHHHHHHHHHH
T ss_pred ccCcccEEEEEecCc-EEEEEeCCHHHHHHHHHHHhh
Confidence 334588999998854 579999999999999887754
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.67 E-value=74 Score=30.51 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=46.8
Q ss_pred CHHHHHHHHccccCCChhHHHH--Hhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHHH
Q psy4663 283 TLYKLVERLTYHIYADPAFVRT--FLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLR 359 (966)
Q Consensus 283 TL~kLIe~Lt~~~~~D~~Fv~~--FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL~ 359 (966)
|++++|++.|+....++++.-+ +--.- ..-..+.+.+..|..|.+..++ .++++-+.+|.
T Consensus 1 s~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~-----------------~vql~AL~LLe 63 (148)
T 1mhq_A 1 SLELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQE-----------------KEALYALTVLE 63 (148)
T ss_dssp CHHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSH-----------------HHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHH
Confidence 5899999999876545444211 11111 1124577888888888764322 26788899999
Q ss_pred HHhhhcccccc
Q psy4663 360 HWVDHHFYDFE 370 (966)
Q Consensus 360 ~Wi~~~~~DF~ 370 (966)
.=|.+|...|.
T Consensus 64 ~~vkNCG~~fh 74 (148)
T 1mhq_A 64 MCMNHCGEKFH 74 (148)
T ss_dssp HHHHHSCHHHH
T ss_pred HHHHHcCHHHH
Confidence 99999987775
No 125
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=32.50 E-value=1.2e+02 Score=37.22 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=31.5
Q ss_pred cceEEEEeCCCc----cEEEEeCCchhhhhhHHHHHHHhhhhh
Q psy4663 190 KNAFQIVPRCGS----PVILIANSPEDKNNWMADLIMLNTKSM 228 (966)
Q Consensus 190 ~naF~I~~~~~~----~~~l~aks~eeK~~W~~~L~~l~~~~~ 228 (966)
..+|.|...... .+.|+|.+.++-+.|+..|..|..+.+
T Consensus 96 ~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~ 138 (799)
T 2zkm_X 96 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL 138 (799)
T ss_dssp GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred cceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 447998866443 278999999999999999999887755
No 126
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.04 E-value=1.2e+02 Score=29.88 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHccccCCChhHH--HHHhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHH
Q psy4663 281 GATLYKLVERLTYHIYADPAFV--RTFLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNV 357 (966)
Q Consensus 281 agTL~kLIe~Lt~~~~~D~~Fv--~~FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~v 357 (966)
...++++|++.|+....++++. -.+--.- ..-..+.+.+..|..|.+..++ .++++-+.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~-----------------~vql~AL~L 73 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQE-----------------WEALQALTV 73 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSH-----------------HHHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCH-----------------HHHHHHHHH
Confidence 4569999999998755444432 1111111 1234677777777777764321 267788888
Q ss_pred HHHHhhhcccccc
Q psy4663 358 LRHWVDHHFYDFE 370 (966)
Q Consensus 358 L~~Wi~~~~~DF~ 370 (966)
|..=|.+|...|.
T Consensus 74 Ld~~vkNCG~~Fh 86 (171)
T 1juq_A 74 LEACMKNCGRRFH 86 (171)
T ss_dssp HHHHHHHSHHHHH
T ss_pred HHHHHHHcCHHHH
Confidence 8888888877775
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.02 E-value=99 Score=31.48 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=48.9
Q ss_pred cCHHHHHHHHccccCCChhHHH--HHhhhc-ccccChHHHHHHHHHHhCCCCCCCCcHHHHHHhhhhcccchhhHHHHHH
Q psy4663 282 ATLYKLVERLTYHIYADPAFVR--TFLTTY-RSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVL 358 (966)
Q Consensus 282 gTL~kLIe~Lt~~~~~D~~Fv~--~FLlTY-RsFttp~eLL~~Li~Ry~~~~~~~~~~~~~k~~~~~~~~~iq~RVl~vL 358 (966)
.+++++|++.|+....++++.- .+--.- ..-..+.+.+..|..|....++ .+|++-+.+|
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~-----------------~~~l~aL~Ll 66 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNP-----------------HSSCYSLLVL 66 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSH-----------------HHHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHH
Confidence 3599999999987654444421 111011 1223677777777777765322 2566777777
Q ss_pred HHHhhhccccccc---CHHHHHHHHHHHH
Q psy4663 359 RHWVDHHFYDFEQ---DAHLLEQLKLFLE 384 (966)
Q Consensus 359 ~~Wi~~~~~DF~~---d~~ll~~L~~Fl~ 384 (966)
..=|.++..-|.. +.++++.|..++.
T Consensus 67 e~~vkNcG~~f~~eva~~~fl~~l~~l~~ 95 (220)
T 1dvp_A 67 ESIVKNCGAPVHEEVFTKENCEMFSSFLE 95 (220)
T ss_dssp HHHHHHSHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHhHHHHHHHHHHhc
Confidence 7777777655532 2334444444443
No 128
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=27.35 E-value=4.7e+02 Score=27.16 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=36.3
Q ss_pred ccccchhhhhHhHHHHHHHHHccCCCC-hhHHHHHHHHHHHHHHHHHHH
Q psy4663 14 KLFLHPLWHCFLYFDYIRILRGLSPDK-EDRESLIQVEGLLKALQVDLS 61 (966)
Q Consensus 14 ~lLl~PVQRi~kY~lLLk~L~k~t~~~-~D~~~l~~Al~~~~~l~~~i~ 61 (966)
..|.-|-.|+.-|+.+..+.+|.|..+ .+-..|+-+.+.+.-.+..||
T Consensus 323 qmlvypyfrvrtyqayvddfikitkkdsqevkelevvhsqlaifqelin 371 (518)
T 4gou_A 323 QMLVYPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELIN 371 (518)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999765 666667666666654444443
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.25 E-value=1.9e+02 Score=27.30 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=27.3
Q ss_pred cCHHHHHHHHccccCCChhHH--HHHhhhcc-cccChHHHHHHHHHHhCCC
Q psy4663 282 ATLYKLVERLTYHIYADPAFV--RTFLTTYR-SFCTPLNFLQLLIERFSIP 329 (966)
Q Consensus 282 gTL~kLIe~Lt~~~~~D~~Fv--~~FLlTYR-sFttp~eLL~~Li~Ry~~~ 329 (966)
..++++|++.|+....++++. -.+--.-+ .-..+.+.+..|..|....
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~ 54 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK 54 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC
Confidence 357889999998755444332 11111111 1245777777777777654
No 130
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.30 E-value=63 Score=29.30 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHhhcCChhhHHHHHHhhccccccchHHHHhhcCHHHHHHHHHH
Q psy4663 521 IMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVEL 567 (966)
Q Consensus 521 IA~~c~~L~NFnsl~aI~saL~ss~I~RLk~Tw~~ls~~~~k~l~~L 567 (966)
..+.||.+|+|.+.+-|+-|+..-+-.+ +..|..+-++.+-.+++|
T Consensus 51 aLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPtl~EL 96 (109)
T 1v54_E 51 ALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNEL 96 (109)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhHHHHh
Confidence 3478999999999999999987655444 445655555555555554
No 131
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.00 E-value=2.5e+02 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=29.6
Q ss_pred cccCHHHHHHHHccccCCChhHHH--HHhhhc-ccccChHHHHHHHHHHhCC
Q psy4663 280 KGATLYKLVERLTYHIYADPAFVR--TFLTTY-RSFCTPLNFLQLLIERFSI 328 (966)
Q Consensus 280 kagTL~kLIe~Lt~~~~~D~~Fv~--~FLlTY-RsFttp~eLL~~Li~Ry~~ 328 (966)
-+..++++|++.|+....++++.- -+--.- ..-..+.+.+..|..|...
T Consensus 13 ~~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~ 64 (152)
T 3rru_A 13 YATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISK 64 (152)
T ss_dssp GGSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC
Confidence 356789999999987654443321 111111 1235678888888888763
No 132
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=21.89 E-value=4.4e+02 Score=31.66 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred cceEeeeccEEEeecCCCCCccceEEEeccCceEEeecCCCCcccccccCCCCCCCceEEeEEEeeccceEEeCCCCCCC
Q psy4663 110 CNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDY 189 (966)
Q Consensus 110 ~~~li~eG~l~ki~~~~~~~~~eR~~FLFd~~Ll~cK~~~~~~~~~~~~~~g~~~~~y~~k~~i~l~~~~I~d~~d~~~~ 189 (966)
++.-++.|.+.|..+-....-+.|+++|+-+-+...-...+ ...+ +.++.+.-+.... -..
T Consensus 556 ~~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~-------------~~~l-----~~~~~v~~v~k~~-i~~ 616 (689)
T 3v5w_A 556 GKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA-------------PQSL-----LTMEEIQSVEETQ-IKE 616 (689)
T ss_dssp SSCCCEEEEEEEC-------CEEEEEEEETTEEEEECTTSC-------------CCEE-----EEGGGEEEEEEEE-SSS
T ss_pred CCcceeecccccCCCcccchhhhhccccCCCcccccccCCC-------------Ccce-----eeeccccccccCc-CCC
Confidence 34667788888763211222247888888777665422111 1111 3344333221111 124
Q ss_pred cceEEEEeCCCccEEEEeCCchhhhhhHHHHHHHhh
Q psy4663 190 KNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNT 225 (966)
Q Consensus 190 ~naF~I~~~~~~~~~l~aks~eeK~~W~~~L~~l~~ 225 (966)
.+.|.+..+..+.|.+.+.+..+..+|+.+|.....
T Consensus 617 ~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 617 RKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp CEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcceeeeecCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 567888888777799999999999999999976443
Done!