RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4663
(966 letters)
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 653 bits (1684), Expect = 0.0
Identities = 378/728 (51%), Positives = 497/728 (68%), Gaps = 31/728 (4%)
Query: 1 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 60
G+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q +
Sbjct: 328 GEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGM 387
Query: 61 SDSLQNY--PRNGRDTGIRAYNR--LKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFRE 116
R ++ R Y++ +Q AI+K NE+ K +DGW DIGQCCNEF E
Sbjct: 388 EKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIME 447
Query: 117 DTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIR 176
TL ++ ER FLFDGL++ CK N + + G + EYRLKE+FF+R
Sbjct: 448 GTLTRVG-----AKHERHIFLFDGLMICCKSNHGQPRLP-----GASNAEYRLKEKFFMR 497
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSI 236
+++I D D+++YK+AF+I+ + + VI A S E+KNNWMA LI L +S ER LD
Sbjct: 498 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERMLDVT 557
Query: 237 LLDEEKKHPLRQPSPELYKFSEPDCPANIILEEK-DNHTGVPLIKGATLYKLVERLTYHI 295
+L EEK+ +R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+
Sbjct: 558 MLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHM 617
Query: 296 YADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKF 342
YADP FVRTFLTTYRSFC P L L+IERF IPE + T + +LK+F
Sbjct: 618 YADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRF 677
Query: 343 RKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVI 402
RKEY+QPVQ RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I
Sbjct: 678 RKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKII 737
Query: 403 FRKTDPLELQKQIKFAFDRSPPPIEWHLKCSE--EEWNILVLHPVEIARQLTLLESEYYR 460
RK + F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YR
Sbjct: 738 QRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYR 797
Query: 461 AVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIE 520
AV+PSE+VGS WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IE
Sbjct: 798 AVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIE 857
Query: 521 IMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQE 580
I+ V +LNNFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY
Sbjct: 858 ILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLA 917
Query: 581 RLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNS 640
+LRSINPPCVPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN
Sbjct: 918 KLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ 977
Query: 641 PYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLK 700
PYCL VE I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ LK
Sbjct: 978 PYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYS-YPLK 1036
Query: 701 SPGIKASK 708
SPG++ S
Sbjct: 1037 SPGVRPSN 1044
Score = 45.2 bits (106), Expect = 1e-04
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 902 LLPPKPFSFGKQVPMFQFNAPGN-DKWAMHEAKEAIEKSKKKISCLVLPVEKIHYLLSKD 960
L +P S Q + P DKWA+ +A+ AIEK K++ + L LPVEKIH LL K+
Sbjct: 59 LCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRR-NPLSLPVEKIHPLL-KE 116
Query: 961 VLQY 964
VL Y
Sbjct: 117 VLGY 120
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 461 bits (1188), Expect = e-153
Identities = 274/483 (56%), Positives = 350/483 (72%), Gaps = 17/483 (3%)
Query: 242 KKHPLRQPSPELYKFSEPDCPANIILEEKDN-HTGVPLIKGATLYKLVERLTYHIYADPA 300
+ +R PS ++Y+F+EPD NII EE G+P+IK T+ KL+ERLTYH+YADP
Sbjct: 4 AEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPN 63
Query: 301 FVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGT-------------VREDLKKFRKEYV 347
FVRTFLTTYRSFC P L L+IERF IPE + T + +LK+FRKEY+
Sbjct: 64 FVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 123
Query: 348 QPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTD 407
QPVQ RVLNV RHWV+HHFYDFE+DA+LL++++ F+ T+ GK+M+KWV+S++K+I RK
Sbjct: 124 QPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKI 183
Query: 408 PLELQKQIKFAFDRSPPPIEWHLKC--SEEEWNILVLHPVEIARQLTLLESEYYRAVKPS 465
+ F SPP +EWH+ E +++L LHP+EIARQLTLLES+ YRAV+PS
Sbjct: 184 ARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPS 243
Query: 466 EIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVL 525
E+VGS WTK +KE SPNLLK+I+HTTN T W EK IVETENLEER+A+VSR IEI+ V
Sbjct: 244 ELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVF 303
Query: 526 NDLNNFNGVLAIVSALGSASVYRLKCTFQALPARLENALVELRELGNDHFRKYQERLRSI 585
+LNNFNGVL +VSA+ S+ VYRL TF+ +P+R + L E EL DH++KY +LRSI
Sbjct: 304 QELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI 363
Query: 586 NPPCVPFFGMYLTNILHIEEGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLS 645
NPPCVPFFG+YLTNIL EEGNP+ L +ELINFSKRR+VAEITGEIQQ+QN PYCL
Sbjct: 364 NPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLR 423
Query: 646 VEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIK 705
VE I+RF ENL P N E + ++YL+ +SL+IEPR K P+++ LKSPG++
Sbjct: 424 VESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYS-YPLKSPGVR 482
Query: 706 ASK 708
S
Sbjct: 483 PSN 485
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 291 bits (746), Expect = 4e-92
Identities = 78/244 (31%), Positives = 145/244 (59%), Gaps = 11/244 (4%)
Query: 441 VLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEK 500
+ +EIA QLTLL+ ++++ E G W K+ K E++P ++K KH + + ++
Sbjct: 3 LGSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIAS 62
Query: 501 TIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARL 560
I+ E++ R + + + + + + L+N+N VL I S++ ++++RLK T+ + +
Sbjct: 63 EIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQT 122
Query: 561 ENALVELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEEL 618
++ L +L++L + F+ +E LR+ +PPCVP+ GMYLT+++ IEEG P+Y + L
Sbjct: 123 KSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---L 179
Query: 619 INFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLK 678
+NFSK R ++ I EI+QFQ + Y + +P++ ++L + + + LYE SL
Sbjct: 180 VNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLD------EESLYESSLL 233
Query: 679 IEPR 682
IEP+
Sbjct: 234 IEPK 237
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 285 bits (730), Expect = 3e-89
Identities = 63/249 (25%), Positives = 133/249 (53%), Gaps = 10/249 (4%)
Query: 438 NILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRW 497
++L + P E A Q+TL++ ++A++P E+ W+K K +PN++ + + W
Sbjct: 27 DVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFW 86
Query: 498 LEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALP 557
+ + I+ + L+ R I+S ++I L +LNN + ++++VSAL SA ++RL T+ L
Sbjct: 87 VVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLN 146
Query: 558 ARLENALVELREL--GNDHFRKYQERLRSIN-PPCVPFFGMYLTNILHIEEGNPDYLPNS 614
+ + +L L D++++ +E +RS+ P +P+ G+YL ++++I+ P
Sbjct: 147 RKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPASGSI- 205
Query: 615 NEELINFSKRRRVAEITGEIQQFQNS--PYCLSVEPRIRRFLENLTPFDNWKEIDISNYL 672
+ N + ++ I I Q S L+ P ++++L+++ + ++ +
Sbjct: 206 ---MENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFV-EDDN 261
Query: 673 YEQSLKIEP 681
Y+ SL+IEP
Sbjct: 262 YKLSLRIEP 270
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 291 bits (746), Expect = 4e-84
Identities = 73/433 (16%), Positives = 155/433 (35%), Gaps = 38/433 (8%)
Query: 284 LYKLVERLTYHIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPE------------- 330
+ + + D + Y S + E+ E
Sbjct: 569 VLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAP 628
Query: 331 ----FQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLL------EQLK 380
+ + R + QP++ + + + H Y + +
Sbjct: 629 QKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVA 688
Query: 381 LFLETINGKSMRKWVDSVSKVIFRKTD-----PLELQKQI----KFAFDRSPPPIEWHLK 431
L + G + K KV+ + D L + ++ + FD P E
Sbjct: 689 DKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGP 748
Query: 432 CSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHT 491
+ ++ ++A Q+T + E + V E++ + + N ++ + NL ++
Sbjct: 749 TTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRF 808
Query: 492 TNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKC 551
W+ + L +R+ ++ + I+I + N N AIV L + +V RL
Sbjct: 809 NEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLAL 868
Query: 552 TFQALPARLENALVELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPD 609
T++ LP++ + E L + + R Y+ + PP +PF + + ++ EGN
Sbjct: 869 TWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKT 928
Query: 610 YLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDIS 669
++ N L+NF K R +A ++ +++ P+ + + + ID
Sbjct: 929 FIDN----LVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQ 984
Query: 670 NYLYEQSLKIEPR 682
L + S ++EPR
Sbjct: 985 RTLSQMSHRLEPR 997
Score = 70.6 bits (172), Expect = 2e-12
Identities = 34/278 (12%), Positives = 78/278 (28%), Gaps = 33/278 (11%)
Query: 234 DSILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEKDNHTGV----------------- 276
SI+L E+ H LR + + + L+E D V
Sbjct: 422 ASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQ 481
Query: 277 ----PLIKGATLYKLVERLTYHIY-------ADPAFVRTFLTTYRSFCTPLNFLQLLIER 325
+ T K++E I A + + F+ + F L+
Sbjct: 482 PQQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAH 541
Query: 326 FSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLET 385
+ QGT +E +Y + RV+ ++ W + ++D + L+ F +
Sbjct: 542 YHAQPSQGTEQER-----MDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVS 596
Query: 386 INGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSEEEWNILVLHPV 445
++ + K + +++ + +
Sbjct: 597 VSDDARMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSD 656
Query: 446 EIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPN 483
E+ ++ ++ Y P + ++
Sbjct: 657 EVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSG 694
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 283 bits (724), Expect = 2e-83
Identities = 68/364 (18%), Positives = 146/364 (40%), Gaps = 21/364 (5%)
Query: 336 REDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQD------AHLLEQLKLFLETINGK 389
+ + R + QP++ + + + H Y + ++ + L + G
Sbjct: 333 QFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGL 392
Query: 390 SMRKWVDSVSKVIFRKTD-----PLELQKQI----KFAFDRSPPPIEWHLKCSEEEWNIL 440
+ K KV+ + D L + ++ + FD P E +
Sbjct: 393 IIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFE 452
Query: 441 VLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTRWLEK 500
++ ++A Q+T + E + V E++ + + N ++ + NL ++ W+
Sbjct: 453 LMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVT 512
Query: 501 TIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSASVYRLKCTFQALPARL 560
+ L +R+ ++ + I+I + N N AIV L + +V RL T++ LP++
Sbjct: 513 EVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKF 572
Query: 561 ENALVELREL--GNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNSNEEL 618
+ E L + + R Y+ + PP +PF + + ++ EGN ++ N L
Sbjct: 573 KKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----L 628
Query: 619 INFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLK 678
+NF K R +A ++ +++ P+ + + + ID L + S +
Sbjct: 629 VNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQMSHR 688
Query: 679 IEPR 682
+EPR
Sbjct: 689 LEPR 692
Score = 78.7 bits (193), Expect = 4e-15
Identities = 29/266 (10%), Positives = 74/266 (27%), Gaps = 15/266 (5%)
Query: 225 TKSMFERTLDSILLDEEKKHPLRQPSPELYKFSEPDCPANIILEEKDNHTGVPLIKGATL 284
K F R L + E L++ ++ + + + T
Sbjct: 132 DKEDFNRILRDV---EANTVRLKEHDQDVLVLEKVPAGNRAANQGNSQPQQKYTVMSGTP 188
Query: 285 YKLVERLTYHIY-------ADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVRE 337
K++E I A + + F+ + F L+ + QGT +E
Sbjct: 189 EKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQE 248
Query: 338 DLKKFRKEYVQPVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDS 397
+Y + RV+ ++ W + ++D + L+ F +++ +
Sbjct: 249 R-----MDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFK 303
Query: 398 VSKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSEEEWNILVLHPVEIARQLTLLESE 457
K + +++ + + E+ ++ ++
Sbjct: 304 EQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHT 363
Query: 458 YYRAVKPSEIVGSAWTKSNKEEKSPN 483
Y P + ++
Sbjct: 364 YTTIRVPVAASVKEVISAVADKLGSG 389
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 167 bits (425), Expect = 8e-46
Identities = 96/233 (41%), Positives = 136/233 (58%), Gaps = 14/233 (6%)
Query: 2 QGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLS 61
+GFKEAV+Y LP+L L P++HC YF+ ++ L S D+ED+E L Q L +Q +
Sbjct: 132 EGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGME 191
Query: 62 DSLQNYPRNGRDTG----IRAYNRLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFRED 117
R + + +Q AI+K NE+ K +DGW DIGQCCNEF E
Sbjct: 192 KICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEG 251
Query: 118 TLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRR 177
TL + +G K E R FLFDGL++ CK N + + G + EYRLKE+FF+R+
Sbjct: 252 TLTR--VGAKHE---RHIFLFDGLMICCKSNHGQPRLP-----GASNAEYRLKEKFFMRK 301
Query: 178 IEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFE 230
++I D D+++YK+AF+I+ + + VI A S E+KNNWMA LI L +S E
Sbjct: 302 VQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLE 354
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 104 bits (261), Expect = 2e-24
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 20/204 (9%)
Query: 439 ILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEK------SPNLLKIIKHTT 492
P IA+ + ++ R + SE + S+ E L II+
Sbjct: 44 FTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHN 103
Query: 493 NFTRWLEKTIV-ETENLEERIAIVSRAIEIMMVLND-LNNFNGVLAIVSALGSASVYRLK 550
+ I+ T LE+R A +S+ I++ + L D + + A++ AL + RL+
Sbjct: 104 TMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLE 163
Query: 551 CTFQALPARLENALV----ELRELGNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEG 606
T+ AL + + +L+ + N VP +T + E
Sbjct: 164 KTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPNNVSVPLLMPLVT----LMER 219
Query: 607 NPDYLPNSNEELINFSKRRRVAEI 630
E + K + EI
Sbjct: 220 QAVTF----EGTDMWEKNDQSCEI 239
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 93.9 bits (233), Expect = 9e-23
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 89 EKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPN 148
LS+ + W DI N F +++ G E ER LF +L++ +
Sbjct: 5 SSGQILSEPIQAWEGDDIKTLGNVIFMSQVVMQ--HGACEEKEERYFLLFSSVLIMLSAS 62
Query: 149 SKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIAN 208
+ + + + I + + L + + F+I +++ N
Sbjct: 63 PRM-------------SGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCN 109
Query: 209 SPEDKNNWMADLIMLNTKS 227
+ +D WM L L
Sbjct: 110 NNQDFQEWMEQLNRLTKSG 128
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 97.6 bits (243), Expect = 1e-21
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
R +R + I+K + +V W DI +E + + + +RV FLFD
Sbjct: 225 RKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIY-QPYGRNQQRVFFLFDH 283
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD------YKNAFQ 194
++LCK + R K R + + E++D+ D D KNAF+
Sbjct: 284 QMVLCKKDLIRRD------------ILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFK 331
Query: 195 IVPRCGSPV-ILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKK---HPLRQPS 250
+ + V + A E+K W+ + + + + +K+ +R+ S
Sbjct: 332 LHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKRQAAMTVRKAS 391
Query: 251 PE 252
+
Sbjct: 392 KQ 393
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 93.7 bits (232), Expect = 9e-21
Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)
Query: 438 NILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSPN------LLKIIKHT 491
+ + +AR +T ++ R + ++ + + E L +++
Sbjct: 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERF 103
Query: 492 TNFTRWLEKTIV-ETENLEERIAIVSRAIEI-MMVLNDLNNFNGVLAIVSALGSASVYRL 549
+ L I+ T + EER A++ + I++ + + N A++ AL A + RL
Sbjct: 104 HTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRL 163
Query: 550 KCTFQALPARLENALVELRELGNDHFRKYQERLRSINP-----PCVPFFGMYLTNILHIE 604
+ T+ L R + + + E P V L +
Sbjct: 164 EQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLESDSAPP 223
Query: 605 EGNPDYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENL 657
EG + + + + + + + + R L +
Sbjct: 224 EGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEVKLQGFQARPELLEV 276
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 87.3 bits (216), Expect = 5e-18
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
R +R + I+K + +++ W D+ +E L ++ + +S +R+ FLFD
Sbjct: 302 RKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVT-QPQAKSQQRMFFLFDH 360
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD------YKNAFQ 194
L+ CK + R K R + +E++DL D D KNAF+
Sbjct: 361 QLIYCKKDLLRRD------------VLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFR 408
Query: 195 IV-PRCGSPVILIANSPEDKNNWMADLIMLNTK-SMFERTLDSILLDEEKKHPLR 247
+ G +L PE K W+ + + + T SI + K+ L
Sbjct: 409 LHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLN 463
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 65.2 bits (159), Expect = 6e-13
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 112 EFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKE 171
L++ + FL + LL+ +R +G YR
Sbjct: 7 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQR------------RGMYRYNA 54
Query: 172 RFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+ + R+ ++++ D+ K+ F+++ S I A + + K W+ L
Sbjct: 55 LYPLDRLAVVNVKDNPPMKDMFKLLMFPES-RIFQAENAKIKREWLEVL 102
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 71.2 bits (174), Expect = 9e-13
Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 35/184 (19%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
+ + + + +++ + L ++ ++++ +R FL D
Sbjct: 376 VKRDNETLRQITNFQLSIENLDQSLAHY--GRPKIDGELKITSVERRSKM-DRYAFLLDK 432
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD----YKNAFQIV 196
LL+CK Y LK+ + ++ D D + + F ++
Sbjct: 433 ALLICKRRGDS---------------YDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLI 477
Query: 197 PRCGSPV-ILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLRQPSPELYK 255
G+ L + E K WM E + +I + +++
Sbjct: 478 EDQGAQGYELFFKTRELKKKWMEQF---------EMAISNIY---PENATANGHDFQMFS 525
Query: 256 FSEP 259
F E
Sbjct: 526 FEET 529
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 69.5 bits (170), Expect = 2e-12
Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 35/184 (19%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
+ + + + +++ + L ++ +++ T+R FL D
Sbjct: 204 VKRDNETLRQITNFQLSIENLDQSLANY--GRPKIDGELKITSVERRS-KTDRYAFLLDK 260
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDD----YKNAFQIV 196
LL+CK Y LK + ++ D + + + F ++
Sbjct: 261 ALLICKRRGDS---------------YDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLI 305
Query: 197 PRCGSPV-ILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLRQPSPELYK 255
G+ L + E K WM E + +I + +++
Sbjct: 306 EDQGAQGYELFFKTRELKKKWMEQF---------EMAISNIY---PENATANGHDFQMFS 353
Query: 256 FSEP 259
F E
Sbjct: 354 FEET 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 3e-12
Identities = 93/617 (15%), Positives = 177/617 (28%), Gaps = 200/617 (32%)
Query: 219 DLIMLNTKSMFERTLD---------SILLDEEKKHPLRQPSPE---LYKFSEPDCPANII 266
D++ + + F D SIL EE H + L F
Sbjct: 20 DILSVFEDA-FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--------WT 70
Query: 267 LEEKDNHTGVPLIKGATL---YK-LVERLTYHIYADPAFVRTFLTTYRS--FCTPLNFLQ 320
L K V L YK L+ + P+ + R + F +
Sbjct: 71 LLSKQEEM-VQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 321 LLIERFSIPEFQGTVREDLKKFRKE-YVQPV---------QFRVLNVLR----------- 359
+ R + +R+ L + R V + + L+V
Sbjct: 129 YNVSR---LQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 360 -HWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLELQKQIKFA 418
W++ + +LE L+ L I+ + D S + R +Q +++
Sbjct: 184 IFWLN--LKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHS---IQAELRRL 237
Query: 419 FDRSPPPIEWHLKC--------SEEEWN-------ILVL----------------HPVEI 447
P + C + + WN IL+ H
Sbjct: 238 LKSKP-----YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 448 ARQLTLLESEYYRAVKPSEIVGSAWTKSNKEE-------KSPNLLKII-----KHTTNFT 495
+TL E + + + ++ +P L II +
Sbjct: 293 HHSMTLTPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 496 RWLE------KTIVET--ENLE--------ERIAI------VSRAI-----------EIM 522
W TI+E+ LE +R+++ + + ++M
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 523 MVLNDLNNFNGVLAIVSALGSASVY----RLKCTFQALPARLENALVELRELGNDHFRKY 578
+V+N L+ + ++ + S+ LK + A L ++V+ + + +
Sbjct: 406 VVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNI----PKTF 459
Query: 579 QERLRSINPPCV-----PFFGMYLTNILHIEEGNPDYLPNSNEELINFS----KRRRV-- 627
+ PP + G +L NI H E ++F K R
Sbjct: 460 D--SDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMV---FLDFRFLEQKIRHDST 512
Query: 628 -----AEITGEIQQFQN-SPYCLSVEPRIRRFLENLTPF--------DNWKEIDI----- 668
I +QQ + PY +P+ R + + F K D+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 669 ---SNYLYEQSLKIEPR 682
++E++ K R
Sbjct: 573 MAEDEAIFEEAHKQVQR 589
Score = 56.8 bits (136), Expect = 3e-08
Identities = 68/442 (15%), Positives = 132/442 (29%), Gaps = 125/442 (28%)
Query: 364 HHFYDFE---QDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFD 420
HH DFE + L +F + F D ++ K I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAF-------------VDNFDCKDVQDMPKSI----- 45
Query: 421 RSPPPIEWHLKCSEEEWNILVLHPVEIARQLTLL-------ESEYYRAVKPSEIVGSAW- 472
S+EE + +++ ++ L L E + V+ + +
Sbjct: 46 -----------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 473 -TKSNKEEKSPNLLKIIKHTTNFTRWLEKTIVETENLEERIAIVSRA---IEIMMVLNDL 528
+ E++ P+++ T + ++ + + + VSR +++ L +L
Sbjct: 95 MSPIKTEQRQPSMM-----TRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLEL 147
Query: 529 NNFNGVLAIVSALGS------ASVYR---LKCTF---------------QALPARLENAL 564
VL I LGS V ++C + + L+ L
Sbjct: 148 RPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 565 VELR---ELGNDHFRKYQERLRSINPPCVPFFGMYLTNILHIEEGNPDYLPNS------- 614
++ +DH + R+ SI L +L + Y N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA--------ELRRLLK----SKPY-ENCLLVLLNV 253
Query: 615 -NEELIN-FSKRRRVAEITGEIQQFQNSPYCLSVEPRIRRFLENLTP------FDNWKEI 666
N + N F+ ++ T Q + + LTP + +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 667 DISNYLYEQSLKIEPRY----AKLRKDIPRRW-----PNLSLKSPGIKASKNYMA----R 713
+ L + L PR A+ +D W N + I++S N + R
Sbjct: 314 RPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 714 NNLPALTVNKITGPKNSPLSES 735
L+V P ++ +
Sbjct: 373 KMFDRLSVF----PPSAHIPTI 390
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 67.7 bits (165), Expect = 7e-12
Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 21/184 (11%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDG 140
+++ + ++K + +V G D+ Q EF +E TL+K+ + R FL +
Sbjct: 214 SMEQGENLQKLVHIEHSVRGQG--DLLQPGREFLKEGTLMKVTGKNRRP---RHLFLMND 268
Query: 141 LLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCG 200
+LL P G+YRLK + +++ P + A +I
Sbjct: 269 VLLYTYPQKD--------------GKYRLKNTLAVANMKVSR-PVMEKVPYALKIETSES 313
Query: 201 SPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLRQPSPELYKFSEPD 260
++L A+S +++ W L + + L + E + L E P
Sbjct: 314 C-LMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPV 372
Query: 261 CPAN 264
Sbjct: 373 THVM 376
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 65.6 bits (160), Expect = 1e-11
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 29/156 (18%)
Query: 80 NRLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKT-ESTERVCFLF 138
N +E +I + E +++ + + ER FLF
Sbjct: 182 NDAMHLSMLE-----------GFDENI-ESQGELILQESFQVWDPKTLIRKGRERHLFLF 229
Query: 139 DGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPR 198
+ L+ K + +Y K + F + + + + D K A +
Sbjct: 230 EMSLVFSKEVKD----------SSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRT 279
Query: 199 CGSP--VILIANSPEDKNNWMADLIMLNTKSMFERT 232
S ++L A+S E+K +W+ + + + ERT
Sbjct: 280 PTSDNKIVLKASSIENKQDWIKHI----REVIQERT 311
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 66.2 bits (161), Expect = 2e-11
Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 81 RLKRQQAIEKTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLN----IGKKTESTERVCF 136
++ + +++ V + +++ LN +GK + E F
Sbjct: 207 KIHEEFGAVFDQLIAEQTGEKKEVAD-LSMGDLLLHTSVIWLNPPASLGKWKKEPELAAF 265
Query: 137 LFDGLLLLCKP----NSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNA 192
+F ++L K+ S + +R + +++ LP +D NA
Sbjct: 266 VFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANA 325
Query: 193 FQIVPRCGSP--------VILIANSPEDKNNWMADL 220
+ S L +SPE + +++ +
Sbjct: 326 VCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSV 361
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 61.1 bits (148), Expect = 5e-10
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 115 REDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFF 174
+ K+ + + +R FL + +L CK + AP Y K+
Sbjct: 222 HKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPS------YSYKQSLN 275
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPV-ILIANSPEDKNNWMADL 220
+ + I + D K F+I V I+ A +PE K W+ +
Sbjct: 276 MTAVGITENVKGDTKK--FEIWYNAREEVYIIQAPTPEIKAAWVNAI 320
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 60.6 bits (147), Expect = 1e-09
Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 24/199 (12%)
Query: 31 RILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKR----QQ 86
I++ + E L + + + + + ++ R Q+
Sbjct: 178 SIIKHTEGGTSEHEKLCRARDQCREILKYV------------NEAVKQTENRHRLEGYQK 225
Query: 87 AIE-KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLC 145
++ E + + + E L K ++ + L + LL+L
Sbjct: 226 RLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRI--SKDKTLDLHVLLLEDLLVLL 283
Query: 146 KPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIV--PRCGSPV 203
+ ++ + + + + ++ +L + D K AF I+ + G P
Sbjct: 284 QKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD-KRAFFIICTSKLGPPQ 342
Query: 204 I--LIANSPEDKNNWMADL 220
I L+A + DKN WM L
Sbjct: 343 IYELVALTSSDKNTWMELL 361
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 59.9 bits (145), Expect = 1e-09
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 121 KLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEI 180
+ + ER FLF+ +++ + GG Q Y K + + +
Sbjct: 219 EAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR-------GGTQPGYVYKNSIKVSCLGL 271
Query: 181 LDLPDSDDYKNAFQIVPRCGSP--VILIANSPEDKNNWMADLIML 223
D + A G +L A P W+ + +
Sbjct: 272 EGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQI 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 96/599 (16%), Positives = 172/599 (28%), Gaps = 240/599 (40%)
Query: 436 EWNILV---LHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEKSP-NLL-KIIKH 490
E +LV + A QL E + + P G A ++ E +P L+ K + +
Sbjct: 17 EHVLLVPTASFFI--ASQL----QEQFNKILPEPTEGFA---ADDEPTTPAELVGKFLGY 67
Query: 491 TTNFTRWLEKTIVETENLEERIAIVSRAIEIMMVLNDL-NNF---NGVLAIVSALGS--- 543
++ VE + + +++ + L + N + N + A+ + L
Sbjct: 68 VSSL--------VEPSKVGQFDQVLN------LCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 544 ----ASVYRLKCTFQA-------LPARLENALVELRELGNDHFRKYQERLRSINPPCVPF 592
+ +K A + +AL R +G + + +I
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLV-----AI------- 159
Query: 593 FGMYLTNILHIEEGNP-DYLPNSNEELINFSKRRRVAEITGEIQQFQNSPYCLSVEPRIR 651
FG +GN DY EEL + + Y + V I+
Sbjct: 160 FG---------GQGNTDDYF----EEL----------------RDLYQT-YHVLVGDLIK 189
Query: 652 RFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAK-LRKDIPRRWPNLSLKSPGIKASKNY 710
E L+ L +L E + + L +I W L++P K+Y
Sbjct: 190 FSAETLSE------------LIRTTLDAEKVFTQGL--NI-LEW----LENPSNTPDKDY 230
Query: 711 MARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPI-------MLSNA 763
+ + P+S PL + + V A + + S
Sbjct: 231 LL----------------SIPIS-------CPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 764 NGSQSPGS---VSTAFSM------FSTQSVQSL------------ASSTITLRPGSSSGP 802
G+ + A + F +++ A +L P
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 803 EFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPR-RETRP 861
+ E P M L S+ +++ + +T
Sbjct: 328 LENNEGVPSPM------L---------------------SI--SNLTQEQVQDYVNKTNS 358
Query: 862 SLSSPPG---YAS---SPDPSPSSPGRFHVSSPSPS------------KPSGS-TSRLPL 902
L P G S VS P S PSG SR+P
Sbjct: 359 HL--PAGKQVEISLVNGAK-------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP- 408
Query: 903 LPPKPFSFGKQVPMF--QF---NAPGNDKWAMHEAKEAIEK--SKKKISC----LVLPV 950
F ++ F +F +P + + A + I K K +S + +PV
Sbjct: 409 -------FSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 55.1 bits (132), Expect = 1e-07
Identities = 93/515 (18%), Positives = 162/515 (31%), Gaps = 161/515 (31%)
Query: 149 SKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVIL--- 205
S + V +L+E+F E + +DD P +P L
Sbjct: 15 SLEHVLLVPTASFFI-AS-QLQEQFNKILPEPTEGFAADDE-------PT--TPAELVGK 63
Query: 206 ----IANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLRQPSPELYKFSEPDC 261
+++ E D ++ + FE L + H L + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGND-IHALAAKLLQEND-TTLVK 118
Query: 262 PANIILE--EKDNHTGVPLIKGAT--LYKLVERLTYHIYA--------DPAF--VRTFLT 307
+I P K + L++ V + A D F +R
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 308 TYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVDH--- 364
TY + LI+ S +R L + V + LN+L W+++
Sbjct: 179 TYHV------LVGDLIKF-SAETLSELIRTTLD------AEKVFTQGLNILE-WLENPSN 224
Query: 365 -----------------------HFYDFEQDAHLL----EQLKLFLETINGKSMRKWVDS 397
H+ A LL +L+ +L+ G S
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQ----GL 277
Query: 398 VSKVIFRKTDPLE-----LQKQIKFAFDRSPPPIEWH-LKCSEEEWNILVLHPVEIARQL 451
V+ V +TD E ++K I F + ++C E +P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLF--------FIGVRCYEA-------YP-----NT 317
Query: 452 TLLESEYYRAVKPSEIVGSAWTKSNKEEKSPNLLKIIKHTTNFTR-WLEKTIVET-ENLE 509
+L P I+ + ++N+ SP +L I +N T+ ++ + +T +L
Sbjct: 318 SL----------PPSILEDSL-ENNEGVPSP-MLSI----SNLTQEQVQDYVNKTNSHLP 361
Query: 510 ERIAIVSRAIEIMMVLNDLNNFNGVLAIVSALGSA-SVYRLKCTFQAL--PARLENALVE 566
+ +EI +V N N +VS G S+Y L T + P+ L+ + +
Sbjct: 362 A-----GKQVEISLV-NGAKNL-----VVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 567 LRELGNDHFRK--YQER-LRSINPPCVPFFGMYLT 598
E RK + R L P PF L
Sbjct: 409 FSE------RKLKFSNRFL----PVASPFHSHLLV 433
Score = 46.6 bits (110), Expect = 5e-05
Identities = 85/526 (16%), Positives = 149/526 (28%), Gaps = 196/526 (37%)
Query: 16 FLHPLWHCFLYFDYIRILRG-------LSPDKEDRESLIQVEGLLKALQVDLSDSLQNYP 68
F L C F+ L G +E+ +L++ + L+K NY
Sbjct: 80 FDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIK-----------NY- 126
Query: 69 RNGRDTGIRAYNRLKRQQAIEKTNELSKTV-DGWTSVDI-----GQ-CCNEFFRE----- 116
I A KR + + L + V +G + + GQ +++F E
Sbjct: 127 -------ITARIMAKRPFDKKSNSALFRAVGEG--NAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 117 ---------------DTLLKLNIGKKTESTERVCFL-FDGLLLLCKPNSKR-----TSVS 155
+TL +L + T E+V + L L P++ S+
Sbjct: 178 QTYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 156 VTAPL-GGNQ-GEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVI---LIANSP 210
++ PL G Q Y + ++L + ++ + ++ IA +
Sbjct: 236 ISCPLIGVIQLAHY-------VVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 211 EDKNNW--MADLIMLNTKSMF-----------ERTLDSILLDEEKKHPLRQPSP------ 251
W + +F +L +L++ ++ PSP
Sbjct: 288 S----WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 252 ----ELYKFSEPDCPANIILEEKDNHTGVPLIKGAT----------LYKLVERLTYHIYA 297
++ + N L + L+ GA LY L L A
Sbjct: 344 LTQEQVQDYVNK---TNSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR-KAKA 398
Query: 298 D--------------PAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKK-- 341
F FL F + L L + + +DL K
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDL---------INKDLVKNN 447
Query: 342 --FRKEYVQ-PVQFRVLNVLRHWVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSV 398
F + +Q PV YD T +G +R S+
Sbjct: 448 VSFNAKDIQIPV----------------YD----------------TFDGSDLRVLSGSI 475
Query: 399 SKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSEEEWNILVLHP 444
S+ I I P++W + +IL P
Sbjct: 476 SERIVD---------CIIRL------PVKWETTTQFKATHILDFGP 506
Score = 45.0 bits (106), Expect = 1e-04
Identities = 106/653 (16%), Positives = 181/653 (27%), Gaps = 252/653 (38%)
Query: 226 KSMFERTL----DSILLDEEKKHPLRQPSPELY-KF-------SEPDCPANI-------- 265
+ F + L + D+E P EL KF EP
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA-----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 266 ------ILEEKDNHTGV---PLIKGATLYKLVERLTYHIYADPAFVRTFLTTYRSFCTPL 316
LE D H TL K E + +I A R F S
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----- 143
Query: 317 NFLQLLIER--------FSIPEF--QGTVR---EDLKKFRKEY---VQPVQFRVLNVLRH 360
L +I F QG E+L+ + Y V + L
Sbjct: 144 ----ALFRAVGEGNAQLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 361 WVDHHFYDFEQDAHLLEQLKLFLETINGKSMRKWVDSVSKVIFRKTDPLELQKQIKFAFD 420
+ DA K+F + +N + +W++ +P
Sbjct: 198 LIRTT-----LDAE-----KVFTQGLN---ILEWLE----------NP------------ 222
Query: 421 RSPPPIEWHLKCSEEEWNILVLHPVEIARQLTLLESEYYRAVKPSEIVGSAWTKSNKEEK 480
+ P ++ L ++ + QL + Y K ++G
Sbjct: 223 SNTPDKDY-LLSIPISCPLIGVI------QL----AHYVVTAK---LLG----------F 258
Query: 481 SP-NLLKIIKHTTNFTRWLEKTIV------ETENLEERIAIVSRAIEIMMVLNDLNNFNG 533
+P L +K T + + +V ET++ E V +AI ++ F
Sbjct: 259 TPGELRSYLKGATGHS----QGLVTAVAIAETDSWESFFVSVRKAITVL--------F-- 304
Query: 534 VLAIVSALGSASVYRLKCTF--QALPARLENALVELRELGNDHFRKYQERLRSINPPCVP 591
+G R + +LP + +E E P P
Sbjct: 305 ------FIG----VRCYEAYPNTSLPPSILEDSLENNE----------------GVPS-P 337
Query: 592 FF---GMYLTNIL-HIEEGNPDYLPNSNE---ELINFSKRRRVAEITGEIQQFQNSPYCL 644
+ + ++ + N +LP + L+N + V ++G P L
Sbjct: 338 MLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN-GAKNLV--VSG-------PPQSL 386
Query: 645 -SVEPRIRRFLENLTPFDNWKEIDISNYLYEQSLKIEPRYAKLRKDIPRRWPNLSLKSPG 703
+ +R+ + + D QS +I +++ RK
Sbjct: 387 YGLNLTLRK-AKAPSGLD-------------QS-RIP--FSE-RK--------------- 413
Query: 704 IKASKNYMARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPIML--- 760
+K S + LP + P +S L P + L F +
Sbjct: 414 LKFSNRF-----LP------VASPFHSHLLV----PASDLINKDLVKNNVSFNAKDIQIP 458
Query: 761 --SNANGS---QSPGSVSTA-FSMFSTQSV------QSLASSTITLRPGSSSG 801
+GS GS+S V Q A+ + PG +SG
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Score = 42.7 bits (100), Expect = 7e-04
Identities = 71/344 (20%), Positives = 111/344 (32%), Gaps = 119/344 (34%)
Query: 12 LPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESL----IQVEGLLKALQVDLSDSLQNY 67
P + + L H Y ++L G +P E R L +GL+ A+ + +DS +++
Sbjct: 238 CPLIGVIQLAH---YVVTAKLL-GFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 68 PRNGRDT-------GIR---AYNRLK-----RQQAIEKTNE------LSKTVDGWTSVDI 106
+ R G+R AY + ++E NE LS + T +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLS--ISNLTQEQV 349
Query: 107 GQCCNEFFREDTLLKLNIGKKTESTERVCF-LFDGLLLLCKPNSKRTSVSVT-------- 157
+D + K N + ++V L N + V V+
Sbjct: 350 ---------QDYVNKTN--SHLPAGKQVEISLV---------NGAKNLV-VSGPPQSLYG 388
Query: 158 ---------APLGGNQGEYRLKER---FFIR--RI----------EILDLPDSDDYKNAF 193
AP G +Q ER F R + DL + D KN
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 194 QI-VPRCGSPVILIANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLRQPS-- 250
PV D + +DL +L+ S+ ER +D I+ R P
Sbjct: 449 SFNAKDIQIPV-------YDTFDG-SDLRVLSG-SISERIVDCII---------RLPVKW 490
Query: 251 PELYKFSEP---DC-P------ANIILEEKDNHTGVPLIKGATL 284
+F D P + KD TGV +I TL
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDG-TGVRVIVAGTL 533
Score = 37.3 bits (86), Expect = 0.027
Identities = 20/170 (11%), Positives = 42/170 (24%), Gaps = 54/170 (31%)
Query: 237 LLDEEKKHPLRQPSPELYKFSEPDCPANIILE---EKDNHTGVPLIKGATLYKLVERLTY 293
+ + H + Y FS +I++ H G KG + + + +
Sbjct: 1645 VWNRADNHFK-----DTYGFS----ILDIVINNPVNLTIHFGGE--KGKRIRENYSAMIF 1693
Query: 294 HIYADPAFVRTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVREDLKKFRKEYVQP---- 349
D + + E + F+ + L ++ QP
Sbjct: 1694 ETIVD------------GKLKTEKIFKEINEHSTSYTFRSE-KGLL--SATQFTQPALTL 1738
Query: 350 VQFRVLNVLRHW----VDHHF-------Y----------DFEQDAHLLEQ 378
++ L+ D F Y E ++
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 59.5 bits (144), Expect = 3e-09
Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 24/199 (12%)
Query: 31 RILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKR----QQ 86
I++ + E L + + + + + ++ R Q+
Sbjct: 220 SIIKHTEGGTSEHEKLCRARDQCREILKYV------------NEAVKQTENRHRLEGYQK 267
Query: 87 AIE-KTNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLC 145
++ E + + + E L K ++ + L + LL+L
Sbjct: 268 RLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWR--ISKDKTLDLHVLLLEDLLVLL 325
Query: 146 KPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIV----PRCGS 201
+ ++ + + + + ++ +L + D K AF I+
Sbjct: 326 QKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD-KRAFFIICTSKLGPPQ 384
Query: 202 PVILIANSPEDKNNWMADL 220
L+A + DKN WM L
Sbjct: 385 IYELVALTSSDKNTWMELL 403
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 58.0 bits (140), Expect = 8e-09
Identities = 22/191 (11%), Positives = 65/191 (34%), Gaps = 21/191 (10%)
Query: 37 SPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKR----QQAIE-KT 91
+ +RE + + + + + + ++ +R Q+ ++ +
Sbjct: 188 TEWPTEREKVKKAADHCRQILNFV------------NQAVKEAENKQRLEDYQRRLDTSS 235
Query: 92 NELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR 151
+LS+ + ++ + E L+ + ++ + L + +L+L + R
Sbjct: 236 LKLSEYPNVEELRNLDLTKRKMIHEGPLVW--KVNRDKTIDLYTLLLEDILVLLQKQDDR 293
Query: 152 TSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQI--VPRCGSPVILIANS 209
+ + + + + + I+ +L + D K F I L+A +
Sbjct: 294 LVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQT 353
Query: 210 PEDKNNWMADL 220
+K W +
Sbjct: 354 VSEKTVWQDLI 364
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 57.7 bits (139), Expect = 1e-08
Identities = 42/254 (16%), Positives = 74/254 (29%), Gaps = 29/254 (11%)
Query: 31 RILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIEK 90
IL D SL + L + + G+R R + I+
Sbjct: 181 SILENTPESHADHSSLKLALERAEELCSQV------------NEGVREKENSDRLEWIQA 228
Query: 91 --TNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPN 148
E + S+ + L K + E FLF+ LLL
Sbjct: 229 HVQCEGLAEQLIFNSLTNCLGPRKLLHSGKLYK-----TKSNKELHGFLFNDFLLLTYMV 283
Query: 149 SKRTSVSVTAPL---GGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVIL 205
+ S + L N K F+ + + D + F I L
Sbjct: 284 KQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHI-SHIDRVYTL 342
Query: 206 IANSPEDKNNWMADLIMLNTKSMFERTLDSILLDEEKKHPLR-QPSPELYKFSEPDCPAN 264
++ ++ W+ + K+ E+ +D+ EK + R Q + + + A
Sbjct: 343 RTDNINERTAWVQKI-----KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEAT 397
Query: 265 IILEEKDNHTGVPL 278
+ K N P
Sbjct: 398 ELKACKPNGKSNPY 411
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 56.7 bits (137), Expect = 1e-08
Identities = 27/210 (12%), Positives = 61/210 (29%), Gaps = 53/210 (25%)
Query: 31 RILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIEK 90
ILR D D++ L + +++ + ++ +T ++ +
Sbjct: 169 EILRHTPNDNPDQQHLEEAINIIQGIVAEI------------NTKTGESECRYYKERLLY 216
Query: 91 TNELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSK 150
E + L K + FLF +L++ + +
Sbjct: 217 LEE-------GQKDSLIDSSRVLCCHGEL------KNNRGVKLHVFLFQEVLVITRAVTH 263
Query: 151 RTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSD---------------DYKNAFQI 195
+ ++ ++ + + DL D + KN F++
Sbjct: 264 NEQLCYQL----------YRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRV 313
Query: 196 VPRCGSP---VILIANSPEDKNNWMADLIM 222
+ GS L AN +K W+ +
Sbjct: 314 SFKNGSQSQTHSLQANDTFNKQQWLNCIRQ 343
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 55.7 bits (134), Expect = 4e-08
Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 23/192 (11%)
Query: 37 SPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKR----QQAIEKTN 92
+ + +RE + + + + + +R L R Q+ ++ ++
Sbjct: 190 TEEPTEREKVELAAECCREILHHV------------NQAVRDMEDLLRLKDYQRRLDLSH 237
Query: 93 ELSKTVDG-WTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR 151
+ ++ + E L K ++ E L D LLLL + +R
Sbjct: 238 LRQSSDPMLSEFKNLDITKKKLVHEGPLTWR--VTKDKAVEVHVLLLDDLLLLLQRQDER 295
Query: 152 TSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIV---PRCGSPVILIAN 208
+ + + + R +R + + D AF ++ + L+A
Sbjct: 296 LLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD-HKAFYVLFTWDQEAQIYELVAQ 354
Query: 209 SPEDKNNWMADL 220
+ ++ NW A +
Sbjct: 355 TVSERKNWCALI 366
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 50.9 bits (121), Expect = 2e-06
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 20/216 (9%)
Query: 725 TGPKNSPLSESDGTPQTPLTP-----PTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMF 779
++E + +TP N++ V +M S S S +++ F+ +
Sbjct: 1452 KYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAY 1511
Query: 780 STQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGST-----FDGLYSP--PPLPPRTNR 832
S +S G SPG ++ YSP P P +
Sbjct: 1512 GGADYGEATSPFGAYGEAPTSPG--FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPS 1569
Query: 833 RREVST--SDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVS-SPS 889
S S S SP P S +SP +SP SP+SP S S S
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 890 PSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPGND 925
P+ PS S + P P S+ P + +P
Sbjct: 1628 PTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPAYS 1662
Score = 42.4 bits (99), Expect = 0.001
Identities = 66/308 (21%), Positives = 99/308 (32%), Gaps = 31/308 (10%)
Query: 631 TGEIQQFQNSPYCLSVEPRIRRFLEN------LTPFDNWKEIDISNYLYEQSLKIEPRYA 684
TG + + P + +TP+ N + ++ + L P
Sbjct: 1438 TGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVD 1497
Query: 685 KLRKDIPRRWPNLSLKSPGIKASKNYMARNNLPALTVNKITGPKNSPLSESDGTPQTPLT 744
D + +A+ + A P ++ P SP S +P +P
Sbjct: 1498 SGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTS-PTYSPTSPAY 1556
Query: 745 PPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEF 804
PT+ S ++P S + SP T+ S T S S + + P S S
Sbjct: 1557 SPTSPS----YSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPT 1608
Query: 805 SGEDSPGLMGSTFDGLYSPP-PLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSL 863
S SP YSP P T+ ++ S S SP P T P+
Sbjct: 1609 SPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPAY 1661
Query: 864 S--SPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLP---PKPFSFGKQVPMFQ 918
S SP +SP SP+SP S SPS S + P P P + P +
Sbjct: 1662 SPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 919 FNAPGNDK 926
Sbjct: 1719 PKQDEQKH 1726
Score = 41.6 bits (97), Expect = 0.002
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 10/169 (5%)
Query: 724 ITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQS 783
T P SP S +P +P PT+ S ++P S + S S S ++S S
Sbjct: 1572 PTSPSYSPTS-PSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626
Query: 784 VQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSV 843
+ S + T S + P +S S SP P T+ ++ S
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP--TSPSYSPTSPSYSP 1684
Query: 844 HSRDISPPPLPPRRETRPSLS-SPPGYA-SSPDPSPSSPGRFHVSSPSP 890
S SP P T PS S + PGY+ SP SP + H + +
Sbjct: 1685 TSPSYSPTS-PNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 50.1 bits (119), Expect = 3e-06
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 23/192 (11%)
Query: 37 SPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKR----QQAIE-KT 91
+ + +RE + + + + + +R L R Q+ ++
Sbjct: 343 TEEPTEREKVELAAECCREILHHV------------NQAVRDMEDLLRLKDYQRRLDLSH 390
Query: 92 NELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKR 151
S ++ + E L K ++ E L D LLLL + +R
Sbjct: 391 LRQSSDPMLSEFKNLDITKKKLVHEGPLTWR--VTKDKAVEVHVLLLDDLLLLLQRQDER 448
Query: 152 TSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSP---VILIAN 208
+ + + + R +R + + D AF ++ L+A
Sbjct: 449 LLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD-HKAFYVLFTWDQEAQIYELVAQ 507
Query: 209 SPEDKNNWMADL 220
+ ++ NW A +
Sbjct: 508 TVSERKNWCALI 519
Score = 41.6 bits (97), Expect = 0.001
Identities = 23/164 (14%), Positives = 39/164 (23%), Gaps = 11/164 (6%)
Query: 780 STQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTS 839
T+ S G P+F + G +R R +
Sbjct: 24 KTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKP--GATDRKGGVGMPSRDRNIGAP 81
Query: 840 DQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSR 899
Q + P L + + D SP P +S S + P +
Sbjct: 82 GQDTPGVSLHPLSLDSPDREPGADAPLE----LGDSSPQGP----MSLESLAPPESTDEG 133
Query: 900 LPLLPPKPFSFGK-QVPMFQFNAPGNDKWAMHEAKEAIEKSKKK 942
P+P G+ + W + + K
Sbjct: 134 AETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPKS 177
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 43.9 bits (103), Expect = 3e-04
Identities = 57/261 (21%), Positives = 78/261 (29%), Gaps = 60/261 (22%)
Query: 710 YMARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFT----VFAPIMLSNANG 765
Y + + V SPL + + + V +P S +
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545
Query: 766 SQSPGSVSTAFSMFSTQSVQSLASSTITLRPG--------SSSGPEFSG------EDSPG 811
+ SPG T+ S + S + + + P S + P +S SP
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605
Query: 812 LMGSTFDGLYSP-----PPLPPRTNRRREVSTSDQ--------SVHSRDISP------PP 852
S YSP P P + TS S S SP P
Sbjct: 1606 Y--SATSPSYSPTSPSYSPTSPSYS-----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1658
Query: 853 LPPRRETRPSLS---------SPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLL 903
P T PS S SP +SP SP+SP S SPS S S P
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTS 1715
Query: 904 PPKPFSFGKQVPMFQFNAPGN 924
P S+ P + +P
Sbjct: 1716 P----SYSPTSPSYSPTSPSY 1732
Score = 43.1 bits (101), Expect = 5e-04
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 765 GSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPP 824
G+ +P S S + A S + G S G E G+ S + G+ SP
Sbjct: 1481 GAGTPYERSPMVDSGFVGSPDAAAFSPLV--QGGSEGREGFGDYGLLGAASPYKGVQSPG 1538
Query: 825 PLPPRTNRRREVSTSDQSVHSRDISPP--PLPPRRETRPSLS-SPPGYA-SSPDPSPSSP 880
P +S S SP P P T P+ S P Y+ +SP SP+SP
Sbjct: 1539 YTSP--------FSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Query: 881 GRFHVS-SPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPG 923
S S SP+ PS S + P P S+ P + +P
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSP-SYSPTSPSYSPTSPS 1633
Score = 40.4 bits (94), Expect = 0.003
Identities = 51/225 (22%), Positives = 71/225 (31%), Gaps = 16/225 (7%)
Query: 711 MARNNLPALTVNKITGPKNSPLSESDG--TPQTPLTPPTANSEFTVFAPIMLSNANGSQS 768
M N V + G +G TP +P + S S
Sbjct: 1455 MLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYER-SPMVDSGFVGSPDAAAFSPLVQGGS 1513
Query: 769 PGSVS-TAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLP 827
G + + S S P SS+ G SP S+ SP +P
Sbjct: 1514 EGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP 1573
Query: 828 PR-----TNRRREVSTSDQSVHSRDISPP-PLPPRRETRPSLSSPPGYASSPDPSPSSPG 881
T+ ++ S S SP P S +SP +SP SP+SP
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP- 1632
Query: 882 RFHVSSPSPSKPSGS---TSRLPLLPPKPFSFGKQVPMFQFNAPG 923
+ +SPS S S S TS P P S+ P + +P
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPS 1675
Score = 38.9 bits (90), Expect = 0.009
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 725 TGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSV 784
T P SP S S +P +P PT+ S ++P S S S ++S S
Sbjct: 1609 TSPSYSPTSPS-YSPTSPSYSPTSPS----YSPT-------SPSYSPTSPSYSPTSPSYS 1656
Query: 785 QSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVH 844
+ S + T S + P +S SP ++ + P P T+ ++ S
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPT 1714
Query: 845 SRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPS 889
S SP S +SP +SP SP+SP + +SPS
Sbjct: 1715 SPSYSPTS------PSYSPTSPSYSPTSPSYSPTSPS-YSPTSPS 1752
Score = 30.8 bits (69), Expect = 2.7
Identities = 17/107 (15%), Positives = 26/107 (24%), Gaps = 3/107 (2%)
Query: 817 FDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPS 876
FD L + + + + + + P S G+ SPD +
Sbjct: 1447 FDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYER---SPMVDSGFVGSPDAA 1503
Query: 877 PSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPG 923
SP S S G P +PG
Sbjct: 1504 AFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPG 1550
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 41.2 bits (96), Expect = 5e-04
Identities = 24/191 (12%), Positives = 67/191 (35%), Gaps = 36/191 (18%)
Query: 38 PDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRLKRQQAIE-----KTN 92
++ ++E L Q L+K + + D+ + +Y + R I K+
Sbjct: 5 DNEVEQEDLAQSLSLVKDVIGAV------------DSKVASYEKKVRLNEIYTKTDSKSI 52
Query: 93 ELSKTVDGWTSVDIGQCCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRT 152
K+ + D+ + + R+ ++ E L +L+ + ++
Sbjct: 53 MRMKSGQMFAKEDLKR--KKLVRDGSVFL--KNAAGRLKEVQAVLLTDILVFLQEKDQKY 108
Query: 153 SVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIV---PRCGSPVILIANS 209
+ L ++ + ++ L + + + ++ V + A+S
Sbjct: 109 IFA------------SLDQKSTVISLKKLIVREVAHEEKGLFLISMGMTDPEMVEVHASS 156
Query: 210 PEDKNNWMADL 220
E++N+W+ +
Sbjct: 157 KEERNSWIQII 167
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 40.1 bits (93), Expect = 6e-04
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 109 CCNEFFREDTLLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYR 168
C F D N +K +R FLF+ LL++ K K+ + Y
Sbjct: 16 YCRLFEVPDP----NKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVT----------YS 61
Query: 169 LKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSP-----VILIANSPEDKNNWMADL 220
++ F + +++L L ++ Y N ++ + A +P+D+ + DL
Sbjct: 62 FRQSFSLYGMQVL-LFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDL 117
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 41.0 bits (95), Expect = 0.002
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 4/146 (2%)
Query: 773 STAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPL---PPR 829
A ++ ++ +Q L ++ G S L + +
Sbjct: 191 VIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGG 250
Query: 830 TNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPS 889
R S S + + P S PG + + +P PG +P
Sbjct: 251 DGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPG 310
Query: 890 PSKPSGSTSRLPLLPPKPFSFGKQVP 915
+P + + P P+P S G P
Sbjct: 311 RPEPGSAGTWNP-GRPEPGSAGTWNP 335
Score = 37.9 bits (87), Expect = 0.015
Identities = 30/223 (13%), Positives = 48/223 (21%), Gaps = 22/223 (9%)
Query: 705 KASKNYMARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPIMLSNAN 764
K + +A N LP+ + + K S ++ A E+ + +
Sbjct: 186 KQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKS-QLQEAPLEWKALLEMQQTKMV 244
Query: 765 GSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPP 824
G S + P G S G + G S
Sbjct: 245 LETFGGDGHAR------------GDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSG 292
Query: 825 PLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFH 884
P + P G + P P S G ++
Sbjct: 293 TWNPGRP-----EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 347
Query: 885 VSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPGNDKW 927
P P + SF P + W
Sbjct: 348 PGRPEPGSAGTWNTG----SSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 35.2 bits (80), Expect = 0.100
Identities = 38/206 (18%), Positives = 57/206 (27%), Gaps = 8/206 (3%)
Query: 699 LKSPGIKASKNYMARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPI 758
L+ LP L ++ ITGP + +
Sbjct: 188 LEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLET 247
Query: 759 MLSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFD 818
+ + S T + S + + SS + PGS GP SG +PG
Sbjct: 248 FGGDGHARGDSVSQGTGLAPGSPRKPGT--SSIGNVNPGSY-GPGSSGTWNPGRPEPGSA 304
Query: 819 GLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDP--- 875
G ++P P + + P P T PG A + +
Sbjct: 305 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSS 364
Query: 876 --SPSSPGRFHVSSPSPSKPSGSTSR 899
S P + PS P T R
Sbjct: 365 GSSSFRPDSSGHGNIRPSSPDWGTFR 390
Score = 31.8 bits (71), Expect = 1.0
Identities = 25/158 (15%), Positives = 39/158 (24%)
Query: 740 QTPLTPPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSS 799
Q L A + L S G V F ++ + +
Sbjct: 185 QKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMV 244
Query: 800 SGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRET 859
+ G S GL P P T+ V+ S P P
Sbjct: 245 LETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSA 304
Query: 860 RPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGST 897
P S+ +P P + +P +P +
Sbjct: 305 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 342
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 38.3 bits (89), Expect = 0.002
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 125 GKKTES--TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILD 182
G+K L L+ + T+ S G++ E + +R +
Sbjct: 27 GRKLRKNWGPSWVVLTGNSLVFYR-EPPPTAPSSGWGPAGSRPESSV----DLRGAALAH 81
Query: 183 LPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+N I G +L ++ + W L
Sbjct: 82 GRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRAL 119
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 39.7 bits (92), Expect = 0.005
Identities = 31/135 (22%), Positives = 38/135 (28%), Gaps = 5/135 (3%)
Query: 766 SQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGL--MGSTFDGLYSP 823
V MFSTQ SL S T GS + P PG+ G + +
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSLTSPTG---RGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59
Query: 824 PPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRF 883
V +S HS + P P LSSP SS + G
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 884 HVSSPSPSKPSGSTS 898
V S
Sbjct: 120 GVLKVPAHPSGNMAS 134
Score = 34.7 bits (79), Expect = 0.14
Identities = 15/84 (17%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
Query: 838 TSDQSVHSRDISPPPLPPRRETRPSLSSP-----PGYASSPDPSPSSPGRFHVSSPSPSK 892
H D + S + P S P SPG+ H + S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 893 PS-GSTSRLPLLPPKPFSFGKQVP 915
P G ++ VP
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVP 85
Score = 33.2 bits (75), Expect = 0.51
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 849 SPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPF 908
P + PG SP + SSP P S S + P
Sbjct: 31 GSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM--GPPFSVISSPMGPHSMSVPTTP 88
Query: 909 SFGKQVPMFQFNAPGN 924
+ G Q ++P N
Sbjct: 89 TLGFSTGSPQLSSPMN 104
Score = 32.8 bits (74), Expect = 0.67
Identities = 22/150 (14%), Positives = 38/150 (25%), Gaps = 10/150 (6%)
Query: 799 SSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRE 858
+ +D + + + + P S + S+H P +
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRG--------SMAAPSLHPSLGPGIGSPGQLH 53
Query: 859 TRPSLSSPPGYA-SSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMF 917
+ S S P P SSP H S + G ++ P L +
Sbjct: 54 SPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIK 113
Query: 918 QFNAPGNDKWAMHEAKEAIEKSKKKISCLV 947
N + S K C +
Sbjct: 114 P-PLGLNGVLKVPAHPSGNMASFTKHICAI 142
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 34.5 bits (79), Expect = 0.029
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 178 IEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
PD QIV R G + L A S +D W L
Sbjct: 64 CRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTL 106
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 36.7 bits (84), Expect = 0.035
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 7/99 (7%)
Query: 809 SPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPG 868
S + Y +R + S S +P E + +
Sbjct: 10 SDSNFMANLPNGYMTD------LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
Query: 869 YASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKP 907
++P P S G F S + K + + +
Sbjct: 64 -PAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVG 101
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 33.9 bits (78), Expect = 0.045
Identities = 6/58 (10%), Positives = 17/58 (29%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+ E + + + D + FQ++ + + A+ W+
Sbjct: 41 ASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAF 98
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.9 bits (82), Expect = 0.057
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 11/137 (8%)
Query: 813 MGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDIS---PPPLPPRRETRPSLSSPPGY 869
MGS+ + L PR + S S S S ++ PP P P + G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 870 ASSPDPSPSSPGRFH-------VSSPSPSKPSGSTSRLPLLPPKPFSFGKQVP-MFQFNA 921
S R +S +P+ G P + G+ VP ++
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120
Query: 922 PGNDKWAMHEAKEAIEK 938
P D + E I++
Sbjct: 121 PEPDPVRVEEVSRRIKR 137
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 35.0 bits (80), Expect = 0.069
Identities = 11/74 (14%), Positives = 21/74 (28%)
Query: 850 PPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFS 909
P + R ++++ A++ + P P G+ + PP
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
Query: 910 FGKQVPMFQFNAPG 923
PM G
Sbjct: 197 PPMGPPMGIPPGRG 210
Score = 30.8 bits (69), Expect = 1.6
Identities = 20/120 (16%), Positives = 27/120 (22%), Gaps = 19/120 (15%)
Query: 796 PGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPP 855
G + G S +M G + + +P PP
Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAG--------------APTQYPP 170
Query: 856 RRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLP----LLPPKPFSFG 911
R P G P R + P P T + PP P G
Sbjct: 171 GRGGPPP-PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
Score = 29.6 bits (66), Expect = 4.3
Identities = 26/141 (18%), Positives = 36/141 (25%), Gaps = 7/141 (4%)
Query: 777 SMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREV 836
SM G++ GP G+ G+ P R V
Sbjct: 79 SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA----GVPMPQAPAGLAGPVRGV 134
Query: 837 STSDQSVHSRDISPPPLPPRRETRPSLSSPPG-YASSPDPSPSSPGRFHVSSPSPSKPSG 895
Q V + S++ P Y P GR + P
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR--GAPPPGMMGPP 192
Query: 896 STSRLPLLPPKPFSFGKQVPM 916
R P+ PP G+ PM
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPM 213
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 35.7 bits (81), Expect = 0.070
Identities = 6/82 (7%), Positives = 17/82 (20%)
Query: 830 TNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPS 889
+ P + P + + ++ + P + R S
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291
Query: 890 PSKPSGSTSRLPLLPPKPFSFG 911
P + + +
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNK 313
Score = 34.5 bits (78), Expect = 0.13
Identities = 11/107 (10%), Positives = 19/107 (17%), Gaps = 5/107 (4%)
Query: 803 EFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPS 862
+ P L+ Y R + + P
Sbjct: 219 QTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPF 278
Query: 863 LSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFS 909
+ S S + P+ + L P S
Sbjct: 279 SAPTERTRRSETESVNPVST-----PASVEYHAGMKSLNKAPYSSNS 320
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 33.5 bits (77), Expect = 0.075
Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDD--YKNAFQIVPRCGSPV-------ILIANSPEDK 213
++ + + + ++ I ++ + + K F+I+P +L+A+S +
Sbjct: 41 DEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEM 100
Query: 214 NNWMADL 220
W+ L
Sbjct: 101 EEWVKFL 107
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 33.3 bits (76), Expect = 0.12
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 125 GKKTES---TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL 181
GK+ + L G+L K + + + P + EY ++ R +
Sbjct: 23 GKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGAT--LSWA 80
Query: 182 DLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
D KN ++ R GS ++ +S + W +
Sbjct: 81 P-KDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAI 118
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 33.0 bits (75), Expect = 0.13
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 184 PDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
P+ + R GS + L A + +D W L
Sbjct: 73 PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTAL 109
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 32.6 bits (74), Expect = 0.16
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 125 GKKTES---TERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEIL 181
GKK + C L G L K A Y + + R +
Sbjct: 24 GKKAANRSWQNVYCVLRRGSLGFYK----------DAKAASAGVPYHGEVPVSLARAQGS 73
Query: 182 DLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
D K+ F++ + G + A + ++W+ +
Sbjct: 74 VAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVV 112
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 34.0 bits (77), Expect = 0.17
Identities = 12/70 (17%), Positives = 23/70 (32%)
Query: 822 SPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPG 881
P P+P ++ ++ + + SP P R + + S P ++P
Sbjct: 111 GPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPS 170
Query: 882 RFHVSSPSPS 891
S P
Sbjct: 171 STSSSDPILD 180
Score = 30.9 bits (69), Expect = 1.6
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 6/88 (6%)
Query: 827 PPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSP------SSP 880
++ H P P + + A+ P P SS
Sbjct: 91 RETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSD 150
Query: 881 GRFHVSSPSPSKPSGSTSRLPLLPPKPF 908
++S ST+ P
Sbjct: 151 TSEELNSQDSPPKQDSTAPSSTSSSDPI 178
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 32.8 bits (75), Expect = 0.17
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+I +L D + K AF+ ++ ++ WM +
Sbjct: 71 QIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAM 114
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Length = 463
Score = 34.3 bits (78), Expect = 0.19
Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 17/167 (10%)
Query: 284 LYKLVERLT---YHIYADPAFV---RTFLTTYRSFCTPLNFLQLLIERFSIPEFQGTVRE 337
L+ V+ L H + D + + + + +++ L+ R + E T
Sbjct: 29 LFNEVKDLPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYITGSR 88
Query: 338 DLKKFRKEYVQPVQFRVLNVLRHWVDHHFYD-FEQDAHLLEQ-LKLFLETINGKSMRKWV 395
K+ + V N W+ + F + E+ + E K
Sbjct: 89 SNKEKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVISEETAEEIWEETKKKLPEMTP 148
Query: 396 DSVSKVIFRKTDPLELQKQIKFAFDRSPPPIEWHLKCSEEEWNILVL 442
+ + + +E+ +E H K E + +L
Sbjct: 149 QKLLRDM-----KVEILCTTDDPVS----TLEHHRKAKEAVEGVTIL 186
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 34.2 bits (78), Expect = 0.20
Identities = 17/113 (15%), Positives = 26/113 (23%), Gaps = 4/113 (3%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGR 882
PP R+ + H P Y SSP+
Sbjct: 42 PPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYM 101
Query: 883 FHVSSPSPSKPSGSTSRL----PLLPPKPFSFGKQVPMFQFNAPGNDKWAMHE 931
+ SP+ L P P + Q N ++K +
Sbjct: 102 DSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFG 154
Score = 33.8 bits (77), Expect = 0.26
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 822 SPPPLPPRTNRRREVSTSDQSVHSRD----ISPPPLPPRRETRPSLSSPPGYASSPDPSP 877
+ + +S++ Q++HS ++ LPP R + P + P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 878 SSPGRFHVSSPSPSKPSGSTSRLPLLPP 905
+ + PS + S P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTSSPE 93
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 33.6 bits (76), Expect = 0.23
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 839 SDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVS--SPSPSKPSGS 896
+ + +++SP T SPP PS P ++S K +
Sbjct: 156 VLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYV 215
Query: 897 TSRLPLLPPKPFSF 910
+ R P+P
Sbjct: 216 SRRCTPTDPEPRYL 229
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 31.6 bits (72), Expect = 0.32
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDD---YKNAFQIVPRCGSPVILIANSPEDKNNWMAD 219
N+ + K F I+ + P ++ F++ + A SP + +W+
Sbjct: 40 NEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQ 99
Query: 220 L 220
+
Sbjct: 100 I 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.33
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 24/49 (48%)
Query: 674 EQSLKIEPRYAKLRKDIPRRWPNLSLKSPGIKASKNYMARNNLPALTVN 722
+Q+LK KL+ SLK Y A ++ PAL +
Sbjct: 19 KQALK------KLQA---------SLKL--------Y-ADDSAPALAIK 43
Score = 31.1 bits (69), Expect = 0.79
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 674 EQSLKIEPRYAKLRKDIPRRWPNLSLKS 701
+ SLK+ YA P L++K+
Sbjct: 26 QASLKL---YA------DDSAPALAIKA 44
Score = 29.5 bits (65), Expect = 2.8
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 782 QSVQSLASSTITLRPGSSSGPEFSGEDSPGL-MGSTFD 818
Q+++ L +S L+ ++ + +P L + +T +
Sbjct: 20 QALKKLQAS---LKL-------YADDSAPALAIKATME 47
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 31.3 bits (71), Expect = 0.39
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWM 217
+ ++ D +AFQ++ + L A S + WM
Sbjct: 53 QCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWM 93
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 33.6 bits (76), Expect = 0.42
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 796 PGSSSGPEFSGEDSPGLMGSTFDGLYSPP--PLPPRTNRRREVSTSDQSVHSRDISPPPL 853
+F P G ++ + PP +P ++ +Q D + +
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 854 PPRRETRPSLSSPPGYASSPDP----SPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFS 909
L P Y P +P + +++P+ +PS + + + +
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140
Score = 29.4 bits (65), Expect = 7.3
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 8/106 (7%)
Query: 821 YSPPPLPPRTNRRREVSTSDQSVHSRDISPPPL---PPRRETRPSLSSPPGYASSPDPSP 877
+ PL + + + PP P + + + D +
Sbjct: 18 QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77
Query: 878 SSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQFNAPG 923
+S H+ + P+ P P G + Q
Sbjct: 78 TSMNDMHLHNVPLVDPNAYMQ-----PQVPVQMGTPLQQQQQPMAA 118
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 31.4 bits (71), Expect = 0.42
Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 20/101 (19%)
Query: 126 KKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPD 185
R FLF ++ + ++ + S Y + + I
Sbjct: 21 GDEPPKLRYVFLFRNKIMFTEQDASTSPPS-----------YTHYSSIRLDKYNIRQHTT 69
Query: 186 SDDYKNAFQIVPRCGS----PVILIANSPED--KNNWMADL 220
+D + P+ + + + W+ D+
Sbjct: 70 DED---TIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 107
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 33.3 bits (75), Expect = 0.49
Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 11/199 (5%)
Query: 705 KASKNYMARNNLPALTVNKITGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPI-----M 759
K + +A++ LP+ + K P+ + E+ +
Sbjct: 183 KQLEQVIAKDLLPSRDRQHLPLIKMKPVPDL-VPGNFKSQLQKVPPEWKALTDMPQMRME 241
Query: 760 LSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDG 819
L G++ ST++ S SS + GSS GP +G +PG G+
Sbjct: 242 LERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSS-GPGSTGNRNPGSSGTGGTA 300
Query: 820 LYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSS 879
+ P P + +S P P T SS G A S
Sbjct: 301 TWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSV 360
Query: 880 PGRFHVSSPSPSKPSGSTS 898
G S+ SGS
Sbjct: 361 SG----STGQWHSESGSFR 375
Score = 32.5 bits (73), Expect = 0.70
Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 23/207 (11%)
Query: 725 TGPKNSPLSESDGTPQTPLTPPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSV 784
TG N SE T ++ S T + +GS P S + + +
Sbjct: 338 TGTWNPGSSERGSAGHW--TSESSVSGSTGQW----HSESGSFRPDSPGSGNARPNNPDW 391
Query: 785 QSLASSTITLRPGSSSGP-----EFSGEDSPGLMGSTFDGLYSPPPLPPR---------T 830
+ + + PG+ S D G S
Sbjct: 392 GTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGSTTTTRRSCSKTVTKTVI 451
Query: 831 NRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSP 890
+ + V S D S P T + + G+ P F +S
Sbjct: 452 GPDGHKEVTKEVVTSEDGSDCPEAMDLGTLSGIGTLDGFRHRH---PDEAAFFDTASTGK 508
Query: 891 SKPSGSTSRLPLLPPKPFSFGKQVPMF 917
+ P + L + S G + +F
Sbjct: 509 TFPGFFSPMLGEFVSETESRGSESGIF 535
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 31.2 bits (71), Expect = 0.52
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWM 217
R+ + D+ K+ F+ A SPE++ W+
Sbjct: 61 RVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWI 101
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 31.2 bits (71), Expect = 0.64
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPV---ILIANSPEDKNNWM 217
+Q + + S + N F +V P L A + + + W+
Sbjct: 51 DQMSPEPIRILDLTECSAVQFDYSQERVNCFCLV----FPFRTFYLCAKTGVEADEWI 104
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/147 (12%), Positives = 30/147 (20%), Gaps = 17/147 (11%)
Query: 736 DGTPQTPLTPPTANSEFTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLR 795
DG+P N P +T + Q +
Sbjct: 1 DGSPAATPEIR----------------VNHEPEPAGGATPGATLPKSPSQLRKGPPVPPP 44
Query: 796 PGSSSGPEFSGEDSPGLMGSTF-DGLYSPPPLPPRTNRRREVSTSDQSVHSRDISPPPLP 854
P + E E L TF + P P T +
Sbjct: 45 PKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASE 104
Query: 855 PRRETRPSLSSPPGYASSPDPSPSSPG 881
+ P++ A+ G
Sbjct: 105 AASSSLPAVVVETFPATVNGTVEGGSG 131
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/72 (20%), Positives = 24/72 (33%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGR 882
P P PP+ +EV D P + ++P+ +S + P PG
Sbjct: 40 PVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGE 99
Query: 883 FHVSSPSPSKPS 894
S + S
Sbjct: 100 TAASEAASSSLP 111
Score = 30.0 bits (66), Expect = 2.7
Identities = 10/87 (11%), Positives = 19/87 (21%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGR 882
P + R P P PP+ + + D
Sbjct: 13 NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 72
Query: 883 FHVSSPSPSKPSGSTSRLPLLPPKPFS 909
S P+ + ++ +P
Sbjct: 73 TTPSQPAEASEVAGGTQPAAGAQEPGE 99
Score = 30.0 bits (66), Expect = 2.7
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 848 ISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKP 907
+ P + E P+ + PG PS G V P PS + +L
Sbjct: 5 AATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP-PVPPPPKHTPSKEVKQEQILSLFE 63
Query: 908 FSFGKQVP 915
+F ++
Sbjct: 64 DTFVPEIS 71
Score = 29.3 bits (64), Expect = 5.8
Identities = 10/86 (11%), Positives = 16/86 (18%)
Query: 822 SPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPG 881
+ P P S + PP P ++ P
Sbjct: 13 NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 72
Query: 882 RFHVSSPSPSKPSGSTSRLPLLPPKP 907
S+ +G T
Sbjct: 73 TTPSQPAEASEVAGGTQPAAGAQEPG 98
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 30.3 bits (68), Expect = 0.75
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 184 PDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
D K+ F++ G+ + A E+ N W+ +
Sbjct: 67 LDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAI 103
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 32.3 bits (72), Expect = 0.87
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 185 DSDDYKNAFQIVPRCGSPVI-LIANSPEDKNNWM 217
D +D + FQI G L A S +D W+
Sbjct: 334 DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWI 367
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 32.0 bits (73), Expect = 1.0
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 837 STSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGS 896
S+ + +++ R + + S PS + + +K
Sbjct: 8 SSGVDNKFNKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSA----NLLAEAKKLND 63
Query: 897 TSRLPLLPPKPFSFGKQVPMFQFNAPGN 924
S G + + + A
Sbjct: 64 AQPKGTENLYFQSMGPEDELPDWAAAKE 91
>3f5n_A Neuroserpin; cleaved form, fenib, human, tissue PLAS activator,
hydrolase inhibitor; 3.15A {Homo sapiens}
Length = 407
Score = 31.8 bits (73), Expect = 1.2
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 728 KNSPLSESDGTPQTPLTPPTANSEFTV--FAPIMLSNANGSQ--SPGSVSTAFSM 778
+ S P P A ++ +V + + + + + SP S++ A M
Sbjct: 2 RGSHHHHHHTDPTGATFPEEAIADLSVNMYNRLRATGEDENILFSPLSIALAMGM 56
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 30.1 bits (68), Expect = 1.2
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWM 217
R+ + D+ K+ F+ A SPE++ W+
Sbjct: 72 RVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWI 112
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 30.7 bits (69), Expect = 1.3
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDD---YKNAFQIVPRCGSPVILIANSPEDKNNWMAD 219
+ + + K F I ++ F+I A SP+D W+
Sbjct: 54 SDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQ 113
Query: 220 LIMLNTKSMFERTLDSILLDEEKKHPLRQPSPE 252
L + + + E + P+
Sbjct: 114 LKFILQDLGSDVIPEDDEERGELYDDVDHPAAV 146
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 30.1 bits (68), Expect = 1.4
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+ +++ D N F+IV + + A+SPE+ ++W+ +
Sbjct: 62 VHKVQECKQSDIMMRDNLFEIVTTSRT-FYVQADSPEEMHSWIKAV 106
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 29.7 bits (67), Expect = 1.4
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDDYK-----NAFQIVPRCGSPVILIANSPEDKNNWM 217
G +R + + + + + N F+I+ L A +P+++ W+
Sbjct: 42 PAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 101
Query: 218 ADL 220
+
Sbjct: 102 KAI 104
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 29.9 bits (67), Expect = 1.4
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 175 IRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
++ I D K+ ++ G+ +L A+ + + W+ L
Sbjct: 69 LQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSL 114
>3f02_A Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein,
protease inhibitor, secreted, serine protease inhibitor,
hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A
1jjo_C 1jjo_A
Length = 359
Score = 31.4 bits (72), Expect = 1.4
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 728 KNSPLSESDGTPQTPLTPPTANSEFTV--FAPIMLSNANGSQ--SPGSVSTAFSM 778
+ S P P A ++ +V + + + + + SP S++ A M
Sbjct: 2 RGSHHHHHHTDPTGATFPEEAIADLSVNMYNRLRATGEDENILFSPLSIALAMGM 56
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 31.1 bits (69), Expect = 1.5
Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 13/149 (8%)
Query: 135 CFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRIEILDLPDSDDYKNAFQ 194
L LL + K ++ + + F + +P+ ++ F
Sbjct: 44 VTLKGCTLLFYETYGKNST----------EQNSAPRCALFAEDSIVQSVPEHPKKEHVFC 93
Query: 195 IVPRCGSPVILIANSPEDKNNWMADL---IMLNTKSMFERTLDSILLDEEKKHPLRQPSP 251
+ CG + A S D NW+ + + LL + + L++
Sbjct: 94 LSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKEDTVRLLKSQTRSLLQKIDM 153
Query: 252 ELYKFSEPDCPANIILEEKDNHTGVPLIK 280
+ + +++ + K+ I+
Sbjct: 154 DSKMKKMAELQLSVVSDPKNRKAIENQIR 182
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 30.3 bits (68), Expect = 1.5
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 184 PDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL---IMLNTKSMFERTLDSILLDE 240
++ + AF++ + S +L A+S + W+ L + LN ++ + + ++
Sbjct: 83 QNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHED 142
Query: 241 EKKHP 245
++ P
Sbjct: 143 DESGP 147
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 31.5 bits (70), Expect = 1.6
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 823 PPPLPPRTNRR---REVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSS 879
P R RR V S+ + P + P P +++ G P+
Sbjct: 23 GQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV-RQPAR 81
Query: 880 PGRFHVSSPSPSKPSGSTSRLPLLPPKP 907
P + S R P
Sbjct: 82 PLGSAWRDQAQRPAVASRRRPTTAGAAP 109
Score = 29.9 bits (66), Expect = 5.1
Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 681 PRYAKLRKDIPRRWPNLSLKSPGIKASKNY----MARNNLPALTVNKITGPKNSPLSESD 736
P A P++ + ++ N + + + P + L D
Sbjct: 109 PLTAVAPAHDTPPVPDVDSRGAILRRQYNLSTSPLTSSVATGTNLVLYAAPLSPLLPLQD 168
Query: 737 GTPQTPLTPPTANSE------FTVFAPIMLSNANGSQSPGSVSTAFSMFSTQSVQSLASS 790
GT + +N T+ ++ NA G ++S +F +T + S+ +
Sbjct: 169 GTNTHIMATEASNYAQYRVARATIRYRPLVPNAVGG---YAISISFWPQTTTTPTSVDMN 225
Query: 791 TITLRP 796
+IT
Sbjct: 226 SITSTD 231
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 30.1 bits (67), Expect = 2.0
Identities = 9/58 (15%), Positives = 17/58 (29%)
Query: 849 SPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPK 906
+ P R +++ + S V+S S+PS + P
Sbjct: 113 TTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGPS 170
Score = 28.1 bits (62), Expect = 8.4
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 822 SPPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPP 867
+ +R S S S S S P R + +S P
Sbjct: 124 RRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGP 169
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 31.1 bits (71), Expect = 2.1
Identities = 8/76 (10%), Positives = 18/76 (23%), Gaps = 1/76 (1%)
Query: 832 RRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPS 891
+ ++ + + P L + + +PS PS
Sbjct: 5 HHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDD-DKAMGSAPSFNVDPLEQPAEPS 63
Query: 892 KPSGSTSRLPLLPPKP 907
K + P +
Sbjct: 64 KLAKKLRAEPDMDTSF 79
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 30.3 bits (68), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
N E +LK +R ++ D+ + +N I+ + LIA SPED + W + L
Sbjct: 96 NDSEEKLKGTVEVR--SAKEIIDNTNKENGIDIIMADRT-FHLIAESPEDASQWFSVL 150
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 29.2 bits (66), Expect = 2.3
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 163 NQGEYRLKERFFIRRIEILD-LPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
+ + K ++ + D F+I A E+++ W+ D+
Sbjct: 38 KKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDI 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 30.8 bits (70), Expect = 2.8
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 31/121 (25%)
Query: 496 RWLEKTIVETENLEERIAIVSRAIEIMMVLNDLNNFNGVLAIVS---------ALGSAS- 545
+W+++ +++ +EER+ +V +E + L +L +A+
Sbjct: 344 QWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQ--EDLLRRFPDLNRLAKKFQRQAANL 401
Query: 546 --VYRLKCTFQALPA---------------RLENALVELRELGNDHFRKYQERL-RSINP 587
YRL LP L + L +L F K+QE + +++
Sbjct: 402 QDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDL-RSDFSKFQEMIETTLDM 460
Query: 588 P 588
Sbjct: 461 D 461
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 29.4 bits (66), Expect = 2.8
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDSDDYK-----NAFQIVPRCGSPVILIANSPEDKNNWM 217
G +R + + + + + N F+I+ L A +P+++ W+
Sbjct: 53 PAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 112
Query: 218 ADL 220
+
Sbjct: 113 KAI 115
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 30.4 bits (68), Expect = 2.9
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 30/178 (16%)
Query: 284 LYKLVERL---TYHIYADPAFV---RTFLTTYRSFCTPLNFLQLLI-------ERFSIPE 330
LY LV+ L + H + DP++ F P ++L ++ + +
Sbjct: 28 LYALVKDLPIISPHGHTDPSWFATNAPFQDATDLLLAPDHYLFRMLYSQGVSLDALKVRS 87
Query: 331 FQGTVREDLKKFRKEYVQPVQFRVLNVLRHWVDHHFYD-FEQDAHLLEQLKLFLETINGK 389
G D ++ + + W++H F F E +
Sbjct: 88 KAGVPDTDPREAWRVFASHFYLFRGTPSWVWLNHVFSQVFGFT-----------EFLEAS 136
Query: 390 SMRKWVDSVSKVIFRK---TDPLELQKQIKFAFDRSPP--PIEWHLKCSEEEWNILVL 442
+ + D ++ + L + I+ P ++ H E W V+
Sbjct: 137 NADDYFDRITAALATDAFRPRALFDRFNIETLATTEGPHESLQHHAAIRESGWGGHVI 194
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich,
protein-carbohydrate complex, sugar binding protein;
HET: MAN; 1.90A {Bowringia mildbraedii}
Length = 240
Score = 30.2 bits (67), Expect = 2.9
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 738 TPQTPLTPPTANSEFTVF--APIMLSNANGSQSPGSVSTAFSMFSTQSVQSLASSTITLR 795
T P S API L ++ + + FS+ S + A +
Sbjct: 35 TKVDSKGNPQGGSVGRALYTAPIRLWQSSSLVASFETTFTFSISQGSSTPADALTFFIAS 94
Query: 796 PGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTNRRREVSTSD 840
P + P SG GL GS+ + + + D
Sbjct: 95 PDTKI-PSGSGGRLLGLFGSSNNAGSDNGVVSVEFDTYPNTDIGD 138
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 30.1 bits (67), Expect = 3.0
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGR 882
P P E + + P+R+ +P S P + P+ +
Sbjct: 68 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127
Query: 883 FHVSSPSPSKPSGSTSRLPLLPPKP 907
++ P S ++ L +P
Sbjct: 128 ATAATSKPV-TSVASGPRALSRNQP 151
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 30.1 bits (67), Expect = 3.0
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 845 SRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLP 904
S + + + PPG +S GR P P P
Sbjct: 155 FEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGP 214
Query: 905 PKPFSFGKQVP 915
P PF G Q
Sbjct: 215 PPPFPAG-QTH 224
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.5 bits (67), Expect = 3.1
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGR 882
PP + P R S + ++ + + R+ R PP P + R
Sbjct: 17 PPRIAPPKLACRTPSPARPALRAP--ASATSGSRKRAR-----PPAAPGRDQARPPARRR 69
Query: 883 FHVSSPSPSKPSGSTSRLPLLPPKP 907
+S S PS + P P
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSP 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 30.3 bits (67), Expect = 3.5
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 852 PLPPRRETRPSLSSPPGYAS-SPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSF 910
P T S+ PP SP SP + +S + S P SF
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61
Query: 911 GKQVPMFQ 918
F+
Sbjct: 62 AVPTIHFK 69
>2q23_A Protein alpha; virus like particle, T363N mutant, icosahedral
virus, hydrolase/RNA complex; 3.20A {Flock house virus}
PDB: 2q25_A
Length = 407
Score = 29.8 bits (66), Expect = 4.4
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLS------SPPGYASSPDPS 876
P PR RRR T R ++ L R ++P L+ +PP + + DP
Sbjct: 26 PQQNVPRNGRRRRNRTRRNRRRVRGMNMAALT--RLSQPGLAFLKCAFAPPDF--NTDPG 81
Query: 877 PSSPGRFH--------VSSPSPSKPSGSTSRLPLLPPKPFSF 910
P RF V + S S +G + + + P ++
Sbjct: 82 KGIPDRFEGKVVSRKDVLNQSISFTAGQDTFILIAPTPGVAY 123
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 28.3 bits (63), Expect = 5.1
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 163 NQGEYRLKERFFIRRIEILDLPDS--------DDYKNAFQIVPRCGSPVILIANSPEDKN 214
++ E R F +R + L D+ + N F+++ + + + A+S ++
Sbjct: 54 SKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERA 113
Query: 215 NWM 217
W+
Sbjct: 114 EWI 116
>4ftb_A Capsid protein beta; nodavirus, beta-barrel, jelly aspartyl
protease, capsid protein, hydrolase, autoproteoLys
virion; HET: EPE; 2.70A {Flock house virus} PDB: 4fsj_A*
2q26_A* 2z2q_A 3lob_A 2bbv_A
Length = 363
Score = 29.4 bits (65), Expect = 5.9
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 823 PPPLPPRTNRRREVSTSDQSVHSRDISPPPLPPRRETRPSLS------SPPGYASSPDPS 876
P PR RRR T R ++ L R ++P L+ +PP + + DP
Sbjct: 26 PQQNVPRNGRRRRNRTRRNRRRVRGMNMAALT--RLSQPGLAFLKCAFAPPDF--NTDPG 81
Query: 877 PSSPGRFH--------VSSPSPSKPSGSTSRLPLLPPKPFSF 910
P RF V + S S +G + + + P ++
Sbjct: 82 KGIPDRFEGKVVSRKDVLNQSISFTAGQDTFILIAPTPGVAY 123
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 29.7 bits (68), Expect = 6.0
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 473 TKSNKEEKSPNLLKIIKHTTNFT--------RWLEKTIVETENLEERIAIVSRAIEIMMV 524
T++ L ++ T T RWL + +T L ER + +
Sbjct: 280 TQNLAGGAENTLASVLDCTV--TPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAG 337
Query: 525 LNDLNNFNGV--LA-IVS--ALGSAS---VYRLKCTFQALPARLENALVELRELGNDHFR 576
L + V L I++ AL +A + R++ FQ LP +L + + +
Sbjct: 338 LQPV--LRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRA----QLETVDSAPVQ 391
Query: 577 KYQERL 582
+E++
Sbjct: 392 ALREKM 397
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 29.3 bits (65), Expect = 6.2
Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 21/146 (14%)
Query: 772 VSTAFSMFSTQSVQSLASSTITLRPGSSSGPEFSGEDSPGLMGSTFDGLYSPPPLPPRTN 831
+++A FS S+ + L P + P S + G++ S P+ +
Sbjct: 1 MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLS-KPFSGVVSPPSLSRLSLLPVAAKRR 59
Query: 832 RRREVSTSDQSVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPS 891
R +E+ ++ PP P S P F +P P
Sbjct: 60 RFQEIPEELKAEFEEFQRPP------------------NQKPQLSDVLPDDF--QAPEPG 99
Query: 892 KPSGSTSRLPLLPPKPFSFGKQVPMF 917
P + LP K ++ +F
Sbjct: 100 TPEYNDIINQFLPKKGPPPPREEIIF 125
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 28.2 bits (63), Expect = 6.4
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 177 RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWM 217
I + F +L A++ ED W+
Sbjct: 61 NIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWL 101
>2r5f_A Transcriptional regulator, putative; transcription regulator,
sugar-binding domain, structural GE PFAM04198, PSI-2;
2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Length = 264
Score = 29.0 bits (65), Expect = 7.1
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 155 SVTAPLGGNQG-EYRLKERFFIRRIEILDLPDSDDYKNAFQIVPRCGSPVI 204
S P G + E RL++ + IR++ +++ + DD ++ Q + + +
Sbjct: 1 SNARPQGLHLELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYL 51
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.5 bits (66), Expect = 7.1
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 849 SPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPK 906
P+ +PP ++P P +P+P +P+G + +
Sbjct: 12 GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHAT 69
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 28.7 bits (63), Expect = 7.1
Identities = 16/84 (19%), Positives = 20/84 (23%), Gaps = 7/84 (8%)
Query: 849 SPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSG---STSRLPLLPP 905
P P P P G P G+ H G P
Sbjct: 19 YPGQGSPGGNRYP----PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 74
Query: 906 KPFSFGKQVPMFQFNAPGNDKWAM 929
+G+ Q+N P K M
Sbjct: 75 GGGGWGQGGTHGQWNKPSKPKTNM 98
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 28.2 bits (62), Expect = 7.2
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 163 NQGEYRLKERFFIR-RIEILDLPDSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
++ ++ I + + ++ F +V V L + E W +
Sbjct: 51 DKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEE-VQLKTENTESGEEWRGFI 108
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 27.5 bits (61), Expect = 7.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 185 DSDDYKNAFQIVPRCGSPVILIANSPEDKNNWMADL 220
S D+ +F+I+ + L A S E+ +W+ L
Sbjct: 61 PSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLL 96
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 29.4 bits (65), Expect = 7.4
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 29 YIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDTGIRAYNRL 82
+RI+ ++ K L Q +G +K + ++ + Q+ R G RA R+
Sbjct: 477 VVRIIYNITRSKNFIPQLAQ-QGAVKII-LEYLANKQDIGEPIRILGCRALTRM 528
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 27.5 bits (61), Expect = 7.9
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 27/105 (25%)
Query: 119 LLKLNIGKKTESTERVCFLFDGLLLLCKPNSKRTSVSVTAPLGGNQGEYRLKERFFIRRI 178
LLK + G + R C + +G+L + S R + +
Sbjct: 16 LLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQ-----------------PAKLNLLTC 58
Query: 179 EILDLPDSDDYKNAFQIVPRCGSPV---ILIANSPEDKNNWMADL 220
++ P+++D K +F ++ S A +D W++ L
Sbjct: 59 QVK--PNAED-KKSFDLI----SHNRTYHFQAEDEQDYVAWISVL 96
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.9 bits (65), Expect = 8.3
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 859 TRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSKPSGSTSRLPLLPPKPFSFGKQVPMFQ 918
+ SPP +P P P P + P P + P K K+ +
Sbjct: 3 SNSQGQSPPVPFPAPAPPPQPPTP-ALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIID 61
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 27.7 bits (62), Expect = 8.5
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 163 NQGEYRLKERFFIRRIE-ILDLPDSDDYKNAFQIVP--RCGSPVILIANSPEDKNNWMAD 219
++ K + + LPD D K F + + + A+ + K W+
Sbjct: 41 SEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKT---FEISASDKKKKQEWIQA 97
Query: 220 L 220
+
Sbjct: 98 I 98
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 29.1 bits (65), Expect = 8.5
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 842 SVHSRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPS 891
S H L PR P+ ++ P+ GR V P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMPATHHSS---ATSAERPTVVGRIPVLDVRPV 49
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 28.1 bits (62), Expect = 8.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 845 SRDISPPPLPPRRETRPSLSSPPGYASSPDPSPSSPGRFHVSSPSPSK 892
S + PPP PP + L P S + SPS V SP P++
Sbjct: 2 SSEPPPPPQPPTHQASVGLLDTPR---SRERSPSPLRGNVVPSPLPTR 46
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 28.9 bits (65), Expect = 10.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 790 STITLRPG---SSSGPEFSGEDSPGLMGSTFDGLYSP 823
T +RPG +G S E P L+ S +DG+ P
Sbjct: 55 ETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRP 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,952,075
Number of extensions: 922036
Number of successful extensions: 2846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 178
Length of query: 966
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 863
Effective length of database: 3,825,930
Effective search space: 3301777590
Effective search space used: 3301777590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.3 bits)