BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4665
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 205/546 (37%), Positives = 299/546 (54%), Gaps = 57/546 (10%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
R PVVTIMGHVDHGKT+LL+ +R+T V E GGITQHIGA+ V ++G +TFLDTPGH
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG-MITFLDTPGH 61
Query: 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIE 233
AAF++MR+RGA TDIVVLVVAADDGVM QT+E+I+ A+ A+VP++VA+NKIDKP AD +
Sbjct: 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD 121
Query: 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGD 293
R KN L GI E+ GG+ Q V +SA GT +D
Sbjct: 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGID-------------------------- 155
Query: 294 IQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQ 353
L +AI+ QAE++ LKA G ++ES D RG +AT LV+
Sbjct: 156 ---------------ELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVR 200
Query: 354 RGTLKKGAIVVAGQAWAKVRSISRKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVD 413
GTL KG IV+ G + +VR++ R L L S V+I LG P +GD
Sbjct: 201 EGTLHKGDIVLCGFEYGRVRAM-RNELGQEVLEA--GPSIPVEI-LGLSGVP--AAGD-- 252
Query: 414 GSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESK--HGRIYLIGDVD 471
V + D AL R + Q + E + I L DV
Sbjct: 253 -EVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQ 311
Query: 472 GSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSA 531
GSVEA+ D ++ ++ I+ GVG ++ TD LA NAI+ FN +A+
Sbjct: 312 GSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVI 371
Query: 532 EELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGC 591
E + ++ ++VIY L+++VK ++ ML ++++G A V +F K +AGC
Sbjct: 372 EAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVF---KSPKFGAIAGC 428
Query: 592 RCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPG 651
++GV+K++ +++R N V++EG+LES++ K++V ++ +ECG+ +++ + + G
Sbjct: 429 MVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN-DVRTG 487
Query: 652 DTIVCF 657
D I F
Sbjct: 488 DVIEVF 493
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/260 (54%), Positives = 169/260 (65%), Gaps = 41/260 (15%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
R PVVTIMGHVDHGKTTLLD LR T V E GGITQHIGAF+V+L SGE++TFLDTPGH
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62
Query: 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIE 233
AAFS MR+RG TDIV+LVVAADDGVM+QTVESI+ A++A VPI++AINK DK AD E
Sbjct: 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE 122
Query: 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGD 293
+ K LLA + ED GGD+QAV +SALTG N+ L EA ML
Sbjct: 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML------------- 169
Query: 294 IQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQ 353
LKAD G VE ++ES D RG + TA++Q
Sbjct: 170 ----------------------------ELKADPTGAVEGTVIESFTDKGRGPVTTAIIQ 201
Query: 354 RGTLKKGAIVVAGQAWAKVR 373
RGTL+KG+I+VAG++WAKVR
Sbjct: 202 RGTLRKGSILVAGKSWAKVR 221
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 1/191 (0%)
Query: 468 GDVDGSVEALLDVFDTY-TSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPA 526
GDVDGSVEA+L+V DTY S C LD+VH+GVG +S DV LA F+ +IY FN
Sbjct: 346 GDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNV 405
Query: 527 AKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKV 586
+ A + GV +K +IY+L+ED++EE+++ LP E +GEA++L F IT+GKKKV
Sbjct: 406 IQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKV 465
Query: 587 PVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI 646
PVAGCR KG ++K FKL+R V+++G L S+KH K++ + +K ++CGL L++ I
Sbjct: 466 PVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKI 525
Query: 647 EFEPGDTIVCF 657
EF+ GD I+C+
Sbjct: 526 EFKVGDAIICY 536
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 109 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL 168
S +++RPPVVTIMGHVDHGKTTLLD +R++ V + E GGITQHIGA+ VT+ +++TFL
Sbjct: 2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-KKITFL 60
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228
DTPGH AF+ MR+RGA TDIV+LVVAADDGVM QTVE+I A+ A VPIIVAINK+DKP
Sbjct: 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120
Query: 229 AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
A+ +R L+ + E+ GGD +SA T +D+L E I
Sbjct: 121 EANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 132/567 (23%), Positives = 242/567 (42%), Gaps = 74/567 (13%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVT------- 166
R P+V+++GHVDHGKTTLLD +R ++V E GGITQHIGA + + E +
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 167 ----------FLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV 216
F+DTPGH AF+ +R RG D+ +L+V ++G QT E++ + R +
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 217 PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276
P +VA NKID R + +G + Q + + T V L +
Sbjct: 124 PFVVAANKID-------RIHGWRVHEGRPFMETFSK-QDIQVQQKLDTKVYELVGKLHE- 174
Query: 277 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIM---HLKADYGGPVEA 333
+ + V D + +PISA+TG + L ++ A+ LK + P
Sbjct: 175 EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARG 234
Query: 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----WAKVRSISRKTLINTALGTVQ 389
I+E K +T G A++ G L+K + + ++RS+ + + + +
Sbjct: 235 TILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRK 294
Query: 390 RTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRY 449
+ ++ I P D D + R+ VT ++ R
Sbjct: 295 KFQKVDEVVAAAGIKIVAPGID------------DVMAGSPLRV------VTDPEKVREE 336
Query: 450 WTCSTP--TRESKHGRIYLIGDVDGSVEALLDVF-DTYT-------SALCRLDIVHYGVG 499
++ + + D GS+EA++ + D Y + R D+V+ G+
Sbjct: 337 ILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADIGDVSRRDVVNAGIA 396
Query: 500 QVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAM- 558
++ ++ AII FN + P+A + + + Q NVIY+L+E+ +E + +
Sbjct: 397 ------LQEDRVYGAII-AFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIE 449
Query: 559 --LPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEG 616
+ E ++ A++ + + + K + G GV+++ + L+ + G
Sbjct: 450 EEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQG--YPLMNDDGETV-G 506
Query: 617 KLESMKHLKEEVTSIKKELECGLRLED 643
+ESM+ E + S + + + ++D
Sbjct: 507 TVESMQDKGENLKSASRGQKVAMAIKD 533
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/479 (24%), Positives = 203/479 (42%), Gaps = 68/479 (14%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA--------------FVVTL 159
R P+V+++GHVDHGKTTLLD +R ++V E GGITQHIGA F+
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKF 63
Query: 160 KSGEQVT---FLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV 216
E + F+DTPGH AF+ +R RG D+ +L+V ++G QT E++ + R +
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT 123
Query: 217 PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276
P +VA NKID R + +G + Q + + T V L +
Sbjct: 124 PFVVAANKID-------RIHGWRVHEGRPFXETFSK-QDIQVQQKLDTKVYELVGKLHE- 174
Query: 277 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIM---HLKADYGGPVEA 333
+ + V D + +PISA+TG + L + A+ LK + P
Sbjct: 175 EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARG 234
Query: 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----WAKVRSISRKTLINTALGTVQ 389
I+E K +T G A++ G L+K + + ++RS+ + + + +
Sbjct: 235 TILEVKEETGLGXTIDAVIYDGILRKDDTIAXXTSKDVISTRIRSLLKPRPLEEXRESRK 294
Query: 390 RTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRY 449
+ ++ I P D D + R+ VT ++ R
Sbjct: 295 KFQKVDEVVAAAGIKIVAPGID------------DVXAGSPLRV------VTDPEKVREE 336
Query: 450 WTCSTP--TRESKHGRIYLIGDVDGSVEALLDVF-DTYT-------SALCRLDIVHYGVG 499
++ + + D GS+EA++ + D Y + R D+V+ G+
Sbjct: 337 ILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDXYVPIKVADIGDVSRRDVVNAGIA 396
Query: 500 QVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAM 558
++ ++ AII FN + P+A + + + Q NVIY+L E+ +E + +
Sbjct: 397 ------LQEDRVYGAII-AFNVKVIPSAAQELKNSDIKLFQGNVIYRLXEEYEEWVRGI 448
>pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial
Translational Initiationfactor 2
Length = 120
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 568 LGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEE 627
+GEA++L F +T+GKKK+PVA CR KG L+++ FKL+R +V+++G L S+KH K++
Sbjct: 10 IGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDD 69
Query: 628 VTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673
++ IK ++CGL L++ +EF+PGD ++C+ +NKVP T W+ PGF
Sbjct: 70 ISVIKTGMDCGLSLDEEKVEFKPGDQVICYEENKVPTKTSWD-PGF 114
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 109/261 (41%), Gaps = 69/261 (26%)
Query: 120 IMGHVDHGKTTLLDTLRNTSVVKSEF---------------GGITQHIGAFVVTLKSGEQ 164
I+ HVDHGK+TL D L + SE GIT + A + K+ +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDG 70
Query: 165 VTF----LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIV 220
T+ +DTPGH FS SR + +L++ A G+ QTV + A E + II
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP 130
Query: 221 AINKIDKPAADIERTKNMLLAQGITVEDLGGDI-QAVPISALTGTNVDNLTEAIERTKNM 279
INKID P+AD++R K + E LG D +A+ SA G ++ + EAI
Sbjct: 131 VINKIDLPSADVDRVKKQI------EEVLGLDPEEAILASAKEGIGIEEILEAI------ 178
Query: 280 LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESK 339
+ +P K D P++A+I +S
Sbjct: 179 --------------VNRIPPP-----------------------KGDPQKPLKALIFDSY 201
Query: 340 FDTHRGKLATALVQRGTLKKG 360
+D +RG +A + G +K G
Sbjct: 202 YDPYRGAVAFVRIFDGEVKPG 222
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 107/261 (40%), Gaps = 69/261 (26%)
Query: 120 IMGHVDHGKTTLLDTLRNTSVVKSEF---------------GGITQHIGAFVVTLKSGEQ 164
I+ HVDHGK+TL D L + SE GIT A K+ +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYKAKDG 70
Query: 165 VTF----LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIV 220
T+ +DTPGH FS SR + +L++ A G+ QTV + A E + II
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIP 130
Query: 221 AINKIDKPAADIERTKNMLLAQGITVEDLGGDI-QAVPISALTGTNVDNLTEAIERTKNM 279
INKID P+AD++R K + E LG D +A+ SA G ++ + EAI
Sbjct: 131 VINKIDLPSADVDRVKKQI------EEVLGLDPEEAILASAKEGIGIEEILEAI------ 178
Query: 280 LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESK 339
+ +P K D P++A+I +S
Sbjct: 179 --------------VNRIPPP-----------------------KGDPQKPLKALIFDSY 201
Query: 340 FDTHRGKLATALVQRGTLKKG 360
+D +RG +A + G +K G
Sbjct: 202 YDPYRGAVAFVRIFDGEVKPG 222
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 120/284 (42%), Gaps = 78/284 (27%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTL-----------RNTSVVKS----EFGGITQHIGAFV 156
MK +I+ H+DHGK+TL D + V+ S GIT I A
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQS 58
Query: 157 VTL----KSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM 210
VTL GE Q+ F+DTPGH FS SR + +LVV A GV QT+ +
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 211 AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGG--DIQAVPISALTGTNVDN 268
A E + ++ +NKID PAAD ER +ED+ G AV SA TG V +
Sbjct: 119 AMEMDLEVVPVLNKIDLPAADPERVAE-------EIEDIVGIDATDAVRCSAKTGVGVQD 171
Query: 269 LTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYG 328
+ E + R +I + D
Sbjct: 172 VLERLVR-------------------------------------------DIPPPEGDPE 188
Query: 329 GPVEAMIVESKFDTHRGKLATALVQRGTLKKG---AIVVAGQAW 369
GP++A+I++S FD + G ++ ++ GTL+KG ++ GQ +
Sbjct: 189 GPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTY 232
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 120/284 (42%), Gaps = 78/284 (27%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTL-----------RNTSVVKS----EFGGITQHIGAFV 156
MK +I+ H+DHGK+TL D + V+ S GIT I A
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQS 58
Query: 157 VTL----KSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM 210
VTL GE Q+ F+DTPGH FS SR + +LVV A GV QT+ +
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 211 AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGG--DIQAVPISALTGTNVDN 268
A E + ++ +NKID PAAD ER +ED+ G AV SA TG V +
Sbjct: 119 AMEMDLEVVPVLNKIDLPAADPERVAE-------EIEDIVGIDATDAVRCSAKTGVGVQD 171
Query: 269 LTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYG 328
+ E + R +I + D
Sbjct: 172 VLERLVR-------------------------------------------DIPPPEGDPE 188
Query: 329 GPVEAMIVESKFDTHRGKLATALVQRGTLKKG---AIVVAGQAW 369
GP++A+I++S FD + G ++ ++ GTL+KG ++ GQ +
Sbjct: 189 GPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTY 232
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 120 IMGHVDHGKTTL---LDTLRNTS----VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
I GH+DHGKTTL L + +TS + +S+ GIT IG L++ ++T +D PG
Sbjct: 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-YRITLVDAPG 82
Query: 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-D 231
HA A D+ ++VV A +G QT E + + +PIIV I K D +
Sbjct: 83 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE 142
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN 278
I+RT+ ++ + + +L +PISA TG VD L I T N
Sbjct: 143 IKRTEMIMKSILQSTHNLKNS-SIIPISAKTGFGVDELKNLIITTLN 188
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG---AFVVTLKSGEQVTFLDTPGHA 174
V +GHVDHGKTTL + T+V+ +GG + I + V +D PGHA
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARGITINTSHVEYDTPTRHYAHVDCPGHA 71
Query: 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKID 226
+ GA D +LVVAA DG M QT E I + R+ VP IIV +NK D
Sbjct: 72 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 124
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 299 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 220 VAINKID 226
V +NK D
Sbjct: 417 VFLNKCD 423
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 72
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 220 VAINKID 226
V +NK+D
Sbjct: 133 VFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L N +V ++G GIT + A V
Sbjct: 15 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT-AHVEYET 73
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 220 VAINKID 226
V +NK+D
Sbjct: 134 VFMNKVD 140
>pdb|1D1N|A Chain A, Solution Structure Of The Fmet-Trnafmet Binding Domain Of
Becillus Stearothermophillus Translation Initiation
Factor If2
Length = 99
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 563 YAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK 622
Y E+V+G+A V Q F ++ K +AGC + G + +++ +L+R+ V++EG+++S+K
Sbjct: 1 YEEKVIGQAEVRQTFKVS---KVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK 57
Query: 623 HLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQ 664
K++V + + ECGL +++ + + + GD I +V +V +
Sbjct: 58 RYKDDVREVAQGYECGLTIKNFN-DIKEGDVIEAYVMQEVAR 98
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 63
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 64 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 123
Query: 220 VAINKID 226
V +NK D
Sbjct: 124 VFLNKCD 130
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 132
Query: 220 VAINKID 226
V +NK D
Sbjct: 133 VFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 220 VAINKID 226
V +NK D
Sbjct: 132 VFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 220 VAINKID 226
V +NK D
Sbjct: 132 VFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 132
Query: 220 VAINKID 226
V +NK D
Sbjct: 133 VFLNKCD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 220 VAINKID 226
V +NK D
Sbjct: 132 VFLNKCD 138
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------GAFVVTLKSG------ 162
V +GHVDHGKTTL + T+V+ +GG + A +T+ +
Sbjct: 299 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP II
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 220 VAINKID 226
V +NK D
Sbjct: 417 VFLNKCD 423
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG----GITQHIGAFV-----VTLKSG------ 162
+ ++ HVD GKTTL ++L S +E G G T+ + +T+++G
Sbjct: 5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 64
Query: 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIV 220
+V +DTPGH F R D +L+++A DGV QT R+ +P I
Sbjct: 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF 124
Query: 221 AINKIDKPAADI 232
INKID+ D+
Sbjct: 125 FINKIDQNGIDL 136
>pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus
Stearothermophilus Translation Initiation Factor If2
Length = 135
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%)
Query: 458 ESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIY 517
E K + + DV GSVEAL+ R+ I+H VG ++ +D+ LAT NAI+
Sbjct: 38 EMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVI 97
Query: 518 TFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVK 552
FN AK +AE V ++ +IY ++E+++
Sbjct: 98 GFNVRPDANAKRAAESEKVDIRLHRIIYNVIEEIE 132
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 118 VTIMGHVDHGKTTLLDTL-----------------RNTSVVKSEFG-------------- 146
+ ++GHVDHGK+TL+ L + S K F
Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68
Query: 147 GITQHIGAFVVTLKSGEQV-TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME--- 202
GIT I + ++ + V T +D PGH F GA D +LVV+A G E
Sbjct: 69 GIT--IDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGM 126
Query: 203 ----QTVESIRMAREAKV-PIIVAINKIDKPAADIERTKNMLLAQGIT--VEDLGGDIQA 255
QT E + +AR + IIVA+NK+D P + ++ + + + ++ LG +
Sbjct: 127 STEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDK 186
Query: 256 VPISALTGTNVDNLTEAIERTKNMLLAQGITV 287
+P ++ DNL IER+ NM G T+
Sbjct: 187 IPFIPVSAWKGDNL---IERSPNMPWYNGPTL 215
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 118 VTIMGHVDHGKTTLLDTL-----------------RNTSVVKSEFG-------------- 146
+ ++GHVDHGK+TL+ L + S K F
Sbjct: 12 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 71
Query: 147 GITQHIGAFVVTLKSGEQV-TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME--- 202
GIT I + ++ + V T +D PGH F GA D +LVV+A G E
Sbjct: 72 GIT--IDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGM 129
Query: 203 ----QTVESIRMAREAKV-PIIVAINKIDKPAADIERTKNMLLAQGIT--VEDLGGDIQA 255
QT E + +AR + IIVA+NK+D P + ++ + + + ++ LG +
Sbjct: 130 STEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDK 189
Query: 256 VPISALTGTNVDNLTEAIERTKNMLLAQGITV 287
+P ++ DNL IER+ NM G T+
Sbjct: 190 IPFIPVSAWKGDNL---IERSPNMPWYNGPTL 218
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTL------RNTSVVKSEFG-----------GITQHIGAF 155
KR V +GHVDHGKTTL L N +V ++G GIT + A
Sbjct: 9 KRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINT-AH 67
Query: 156 VVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK 215
V + + +D GHA + GA D +LVV+A DG M QT E I +AR+
Sbjct: 68 VEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVG 127
Query: 216 VP-IIVAINKID 226
V I+V +NK+D
Sbjct: 128 VRYIVVFMNKVD 139
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEF-GGITQHIGAFVVTLKSG------------ 162
+ ++GHVDHGKTTL L T E GIT IG ++
Sbjct: 14 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPIC 73
Query: 163 ----------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+V+F+D+PGH A GA D +LV+AA++ MA
Sbjct: 74 PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 133
Query: 213 E--AKVPIIVAINKI---DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
+ + II+A NKI DK A + +G E + +PISAL G N+D
Sbjct: 134 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAE----NAPIIPISALHGANID 189
Query: 268 NLTEAIE 274
L +AIE
Sbjct: 190 VLVKAIE 196
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEF-GGITQHIGAFVVTLKSG------------ 162
+ ++GHVDHGKTTL L T E GIT IG ++
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 163 ----------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+V+F+D PGH A GA D +LV+AA++ MA
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 213 E--AKVPIIVAINKI---DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
+ + II+A NKI DK A + +G E+ +PISAL G N+D
Sbjct: 133 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA----PIIPISALHGANID 188
Query: 268 NLTEAIE 274
L +AIE
Sbjct: 189 VLVKAIE 195
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEF-GGITQHIGAFVVTLKSG------------ 162
+ ++GHVDHGKTTL L T E GIT IG ++
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 163 ----------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+V+F+D PGH A GA D +LV+AA++ MA
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 213 E--AKVPIIVAINKI---DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
+ + II+A NKI DK A + +G E+ +PISAL G N+D
Sbjct: 133 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA----PIIPISALHGANID 188
Query: 268 NLTEAIE 274
L +AIE
Sbjct: 189 VLVKAIE 195
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 49/222 (22%)
Query: 120 IMGHVDHGKTTLL------------DTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ--- 164
++GHVDHGK+TL+ T++ + G ++ + LK +
Sbjct: 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGV 70
Query: 165 ---------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME------- 202
T +D PGH F GA D +LVV+A G E
Sbjct: 71 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG 130
Query: 203 QTVESIRMAREAKV-PIIVAINKID--KPAADIERTKNMLLAQGITVEDLG---GDIQAV 256
QT E I +A+ + +IVA+NK+D +P D +R K ++ + G ++ V
Sbjct: 131 QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFV 190
Query: 257 PISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVP 298
P+ A +G DN+T +++NM G T+E+ ++ P
Sbjct: 191 PVVAPSG---DNIT---HKSENMKWYNGPTLEEYLDQLELPP 226
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEF-GGITQHIGAFVVTLKSG------------ 162
+ +GHVDHGKTTL L T E GIT IG ++
Sbjct: 13 IGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 163 ----------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMA 211
+V+F+D PGH A GA D +LV+AA++ QT E +
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXAL 132
Query: 212 R-EAKVPIIVAINKI---DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
+ + II+A NKI DK A + +G E+ +PISAL G N+D
Sbjct: 133 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENA----PIIPISALHGANID 188
Query: 268 NLTEAIE 274
L +AIE
Sbjct: 189 VLVKAIE 195
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 121/324 (37%), Gaps = 91/324 (28%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVT--LKSGEQVTFLD 169
+KR + I H+D GKTT + I + G VT ++ +D
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTER-------------ILYYTGRIAVTTCFWKDHRINIID 50
Query: 170 TPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
TPGH F+ R D ++V + GV Q+ R A + KVP I NK+DK
Sbjct: 51 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 110
Query: 230 AD----IERTKNMLLAQGITVE-------------------------DLGGDIQAVPISA 260
AD I + L A+ + ++ DLG DI+ +PI
Sbjct: 111 ADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPE 170
Query: 261 LTGTNVDNLTEAIERTKNML-----LAQGITVEDLGG-----------------DIQAVP 298
+ L +A E + ++ + I ++ L G D++ P
Sbjct: 171 ------EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP 224
Query: 299 I---SALTGTNVDNLTEAIV----------------AQAEIMHLKADYGGPVEAMIVESK 339
+ SAL V L +A+V + E++ + D GP+ A+ +
Sbjct: 225 VFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIM 284
Query: 340 FDTHRGKLATALVQRGTLKKGAIV 363
D + G+L V GTL G+ V
Sbjct: 285 ADPYVGRLTFIRVYSGTLTSGSYV 308
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG---- 172
V I+G + GK+TLL+ L T V + S G T+ V + + Q+ FLDTPG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 173 ------HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR-MAREAKVPIIVAINKI 225
+ + + D+++ ++ A +G + E + + P+IV INKI
Sbjct: 72 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 131
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
DK I KN+L + + VPISAL G N+D L + I
Sbjct: 132 DK----IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 175
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG---- 172
V I+G + GK+TLL+ L T V + S G T+ V + + Q+ FLDTPG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 173 ------HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR-MAREAKVPIIVAINKI 225
+ + + D+++ ++ A +G + E + + P+IV INKI
Sbjct: 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 132
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
DK I KN+L + + VPISAL G N+D L + I
Sbjct: 133 DK----IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 176
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG---------AFVV--TLKSG---- 162
+ ++GHVDHGKTTL+ + K + G +IG A+V + KS
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 163 -----EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-QTVES-IRMAREAK 215
+++F+D PGH GA D +LVVAA++ + QT E + +
Sbjct: 70 EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV 129
Query: 216 VPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
+I+ NK+D + + ++ + Q T ++ +P+SAL N+D+L E IE
Sbjct: 130 KNLIIVQNKVDVVSKEEALSQYRQIKQ-FTKGTWAENVPIIPVSALHKINIDSLIEGIE 187
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-------QTVESIRMAREAKV 216
+ + LD PGH + GA DI VLV++A G E QT E +AR +
Sbjct: 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI 181
Query: 217 -PIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGG-----DIQAVPISALTGTNVDN 268
++V INK+D+P+ ER K + + + + G D++ +P+SA TG NV +
Sbjct: 182 NHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 126/338 (37%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +DTPGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +DN E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV------- 216
QVT +D PGH F G D +L++A G E + RE +
Sbjct: 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145
Query: 217 -PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+IVA+NK+D D R + ++ ++ +G + + VP ++G N DN+ EA
Sbjct: 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA--- 202
Query: 276 TKNMLLAQGITVEDLGGDIQA 296
T N +G E G ++
Sbjct: 203 TTNAPWYKGWEKETKAGVVKG 223
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG------------------GITQHIGAFVVTL 159
V +GHVDHGKTTL + T ++ G GIT + A V
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYS 62
Query: 160 KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-I 218
+ D PGHA + G D +LVVAA+DG M QT E + +AR+ V +
Sbjct: 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 219 IVAINKID 226
+V +NK D
Sbjct: 123 VVYVNKAD 130
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 28/184 (15%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGITQHIG---------AFVV--TLKS 161
+ ++GHVDHGKTTL+ + K + G +IG A+V + KS
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKS 70
Query: 162 G---------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-QTVES-IRM 210
+++F+D PGH GA D +LVVAA++ + QT E + +
Sbjct: 71 CGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 130
Query: 211 AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270
+I+ NK+D + + ++ + Q T ++ +P+SAL N+D+L
Sbjct: 131 GIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQ-FTKGTWAENVPIIPVSALHKINIDSLI 189
Query: 271 EAIE 274
E IE
Sbjct: 190 EGIE 193
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 126/341 (36%), Gaps = 97/341 (28%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +DTPGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERTKNML-----LAQGITVEDLGG------ 292
DLG DI+ +PI + L +A E + ++ + I ++ L G
Sbjct: 187 TYGNDLGTDIREIPIPE------EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEE 240
Query: 293 -----------DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMH 322
D++ P+ SAL V L +A+V + E++
Sbjct: 241 ELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVE 300
Query: 323 LKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
+ D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 301 IHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 125/338 (36%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +DTPGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Query: 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-------QTVESIRMAREAK 215
+ T LD PGH +F GA D+ VLV++A G E QT E +A+ A
Sbjct: 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG 154
Query: 216 VP-IIVAINKIDKPAAD-----IERTKNMLLAQGITVEDLG----GDIQAVPISALTGTN 265
V +IV INK+D P + E K L+ ++ +G DI +P S LTG N
Sbjct: 155 VKHLIVLINKMDDPTVNWSNERYEECKEKLVP---FLKKVGFNPKKDIHFMPCSGLTGAN 211
Query: 266 V 266
+
Sbjct: 212 L 212
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 125/338 (36%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +DTPGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKID 226
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP IIV +NK D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 125/338 (36%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +DTPGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKID 226
+D PGHA + GA D +LVVAA DG M QT E I + R+ VP IIV +NK D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG------------------GITQHIGAFVVTL 159
V +GHVDHGKTTL + T ++ G GIT + A V
Sbjct: 17 VGTIGHVDHGKTTLTAAI--TKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYS 73
Query: 160 KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-I 218
+ D PGHA + G D +LVVAA+DG QT E + +AR+ V +
Sbjct: 74 TAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHV 133
Query: 219 IVAINKID 226
+V +NK D
Sbjct: 134 VVYVNKAD 141
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------------- 164
+ IM H+D GKTT + + + + G H GA + EQ
Sbjct: 13 IGIMAHIDAGKTTTTERILYYTGRIHKIG--ETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 165 ------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
V +DTPGH F+ R D V V+ A GV QT R A VP
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 219 IVAINKIDKPAADIERTKNML 239
IV +NK+DK A+ E + + L
Sbjct: 131 IVFVNKMDKLGANFEYSVSTL 151
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 31/153 (20%)
Query: 118 VTIMGHVDHGKTTLLDTL---------------RNTSVVKSEF-GGITQHIGAFVVTLKS 161
++++ HVDHGK+TL D+L R T K E GIT A + +
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 162 GEQ---------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVE 206
++ + +D+PGH FS+ + TD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNML 239
+R A ++ +V INK+D+ +++ +K L
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 31/153 (20%)
Query: 118 VTIMGHVDHGKTTLLDTL---------------RNTSVVKSEF-GGITQHIGAFVVTLKS 161
++++ HVDHGK+TL D+L R T K E GIT A + +
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 162 GEQ---------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVE 206
++ + +D+PGH FS+ + TD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNML 239
+R A ++ +V INK+D+ +++ +K L
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 121/336 (36%), Gaps = 87/336 (25%)
Query: 112 MKRPPVVTIMGHVDHGKTT-----LLDTLRNTSVVKSEFGGITQHI------------GA 154
+KR + I H+D GKTT L T R + + G T A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAA 68
Query: 155 FVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA 214
++ +D PGH F+ R D ++V + GV Q+ R A +
Sbjct: 69 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 215 KVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE----------------------- 247
KVP I NK+DK AD I + L A+ + ++
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 248 --DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGITVE 288
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 189 GNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 289 DLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKADY 327
G D++ P+ SAL V L +A+V + E++ + D
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
GP+ A+ + D + G+L V GTL G+ V
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEFG-GITQHIG----------------AFVV- 157
+ ++GHVDHGKTTL+ + TS E G+T +G A+V
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 158 -TLKSG---------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-QTVE 206
+ KS +++F+D PGH GA D +LVVAA++ + QT E
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 207 S-IRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265
+ + +I+ NK+D + + ++ + Q T ++ +P+SAL N
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQ-FTKGTWAENVPIIPVSALHKIN 189
Query: 266 VDNLTEAIE 274
+D+L E IE
Sbjct: 190 IDSLIEGIE 198
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 118 VTIMGHVDHGKTTLLDTLRN--TSVVKSEFG-GITQHIG----------------AFVV- 157
+ ++GHVDHGKTTL+ + TS E G+T +G A+V
Sbjct: 12 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 71
Query: 158 -TLKSG---------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-QTVE 206
+ KS +++F+D PGH GA D +LVVAA++ + QT E
Sbjct: 72 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 131
Query: 207 S-IRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265
+ + +I+ NK+D + + ++ + Q T ++ +P+SAL N
Sbjct: 132 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQ-FTKGTWAENVPIIPVSALHKIN 190
Query: 266 VDNLTEAIE 274
+D+L E IE
Sbjct: 191 IDSLIEGIE 199
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVA 221
G +V +DTPGH F+ R D V V+ A GV QT R A VP IV
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 222 INKIDKPAADIERTKNML 239
+NK+DK A+ E + + L
Sbjct: 134 VNKMDKLGANFEYSVSTL 151
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS---------GEQVT 166
P + I+G+ + GKT+L ++L G+TQ + + T S ++
Sbjct: 180 PSIGIVGYTNSGKTSLFNSL----------TGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 167 FLDTPGH----------AAFSNMRSRGAHCTDIVVLVV---AADDGVMEQTVESIRMARE 213
+DT G A F + A +D ++LV+ +++ ++E S + RE
Sbjct: 230 LVDTVGFIRGIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILRE 287
Query: 214 AKV---PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270
V PI+V +NKIDK D+ K + L + ++ E +PISAL TN++ L
Sbjct: 288 IGVSGKPILVTLNKIDKINGDL--YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLR 345
Query: 271 EAI 273
+ I
Sbjct: 346 DKI 348
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 124/338 (36%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +D PGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 124/338 (36%), Gaps = 91/338 (26%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+KR + I H+D GKTT + + + + G + H GA + E+
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV--HEGAATMDFMEQERERGITIT 66
Query: 165 ------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
+ +D PGH F+ R D ++V + GV Q+ R A
Sbjct: 67 AAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 213 EAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITVE--------------------- 247
+ KVP I NK+DK AD I + L A+ + ++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 248 ----DLGGDIQAVPISALTGTNVDNLTEAIERT--------KNMLL---------AQGIT 286
DLG DI+ +PI +D E E+ +N++L + +
Sbjct: 187 TYGNDLGTDIREIPIPE---EYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243
Query: 287 VEDLGG--DIQAVPI---SALTGTNVDNLTEAIV----------------AQAEIMHLKA 325
G D++ P+ SAL V L +A+V + E++ +
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHP 303
Query: 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363
D GP+ A+ + D + G+L V GTL G+ V
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 28/148 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------------- 164
+ I H+D GKTT + + + V + G + H GA + EQ
Sbjct: 12 IGISAHIDAGKTTTTERILFYTGVNHKIGEV--HDGAATMDWMEQEQERGITITSAATTA 69
Query: 165 -------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMA 211
+ +DTPGH F+ R D V+V A GV Q+ R A
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 212 REAKVPIIVAINKIDKPAADIERTKNML 239
+ KVP I +NK+D+ A+ + N +
Sbjct: 130 NKYKVPRIAFVNKMDRMGANFLKVVNQI 157
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 28/148 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------------- 164
+ I H+D GKTT + + + V + G + H GA + EQ
Sbjct: 13 IGISAHIDAGKTTTTERILFYTGVNHKIGEV--HDGAATMDWMEQEQERGITITSAATTA 70
Query: 165 -------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMA 211
+ +DTPGH F+ R D V+V A GV Q+ R A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 212 REAKVPIIVAINKIDKPAADIERTKNML 239
+ KVP I +NK+D+ A+ + N +
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLKVVNQI 158
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------------- 164
+ IM H+D GKTT + + + + G H GA + EQ
Sbjct: 13 IGIMAHIDAGKTTTTERILYYTGRIHKIG--ETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 165 ------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
V +DTPGH + R D V V+ A GV QT R A VP
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 219 IVAINKIDKPAADIERTKNML 239
IV +NK+DK A+ E + + L
Sbjct: 131 IVFVNKMDKLGANFEYSVSTL 151
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV-----------VTLKSGEQVT 166
+ I HVD GKTT + + + V + G + H GA +T+ S T
Sbjct: 16 IGICAHVDAGKTTTTERVLFYTGVNHKLGEV--HDGAATTDWMVQEQERGITITSAAVTT 73
Query: 167 F---------------LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMA 211
F +DTPGH F+ R D V+V GV Q+ R A
Sbjct: 74 FWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133
Query: 212 REAKVPIIVAINKIDKPAADIER 234
+ VP IV +NK+D+ A+ R
Sbjct: 134 NKYGVPRIVYVNKMDRQGANFLR 156
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG---- 172
+ I+G + GK+TLL+ L + + S T+H + T + Q ++DTPG
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHME 69
Query: 173 -HAAFSNMRSRGAHCT----DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227
A + + ++ A + ++V+ VV + + + RE K P+I+A+NK+D
Sbjct: 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM-VLNKLREGKAPVILAVNKVDN 128
Query: 228 PAADIERTKNM-LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ ++ LA + D+ VPISA TG NVD + + +
Sbjct: 129 VQEKADLLPHLQFLASQMNFLDI------VPISAETGLNVDTIAAIVRK 171
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG---- 172
+ I+G + GK+TLL+ L + + S T+H + T + Q ++DTPG
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHME 66
Query: 173 -HAAFSNMRSRGAHCT----DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227
A + + ++ A + ++V+ VV + + + RE K P+I+A+NK+D
Sbjct: 67 EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM-VLNKLREGKAPVILAVNKVDN 125
Query: 228 PAADIERTKNM-LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ ++ LA + D+ VPISA TG NVD + + +
Sbjct: 126 VQEKADLLPHLQFLASQMNFLDI------VPISAETGLNVDTIAAIVRK 168
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 39/183 (21%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS---------GEQVT 166
P + I+G+ + GKT+L ++L G+TQ + + T S ++
Sbjct: 180 PSIGIVGYTNSGKTSLFNSL----------TGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 167 FLDTPGH----------AAFSNMRSRGAHCTDIVVLVV---AADDGVMEQTVESIRMARE 213
+DT A F + A +D ++LV+ +++ ++E S + RE
Sbjct: 230 LVDTVSFIRGIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILRE 287
Query: 214 AKV---PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270
V PI+V +NKIDK D+ K + L + ++ E +PISAL TN++ L
Sbjct: 288 IGVSGKPILVTLNKIDKINGDL--YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLR 345
Query: 271 EAI 273
+ I
Sbjct: 346 DKI 348
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS---------GEQVT 166
P + I+G+ + GKT+L ++L G+TQ + + T S ++
Sbjct: 180 PSIGIVGYTNSGKTSLFNSL----------TGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 167 FLDT-------PGH---AAFSNMRSRGAHCTDIVVLVV---AADDGVMEQTVESIRMARE 213
+DT P A F + A +D ++LV+ +++ ++E S + RE
Sbjct: 230 LVDTVPFIRGIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILRE 287
Query: 214 AKV---PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270
V PI+V +NKIDK D+ K + L + ++ E +PISAL TN++ L
Sbjct: 288 IGVSGKPILVTLNKIDKINGDL--YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLR 345
Query: 271 EAI 273
+ I
Sbjct: 346 DKI 348
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVA 221
G +V +DTPGH + R D V V+ A GV QT R A VP IV
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 222 INKIDKPAADIERTKNML 239
+NK+DK A+ E + + L
Sbjct: 134 VNKMDKLGANFEYSVSTL 151
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 165 VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
V LDTPGH FS R D ++V+ A GV ++T + + + R PI+ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 225 IDKPAAD 231
+D+ D
Sbjct: 144 LDRDIRD 150
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 165 VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
V LDTPGH FS R D ++V+ A GV ++T + + + R PI+ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 225 IDKPAAD 231
+D+ D
Sbjct: 144 LDRDIRD 150
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDK 227
DTPGH ++ + GA D+ +++V A GV QT +A + I+VAINK D
Sbjct: 110 DTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXDL 169
Query: 228 PAADIE-----RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271
D + + A+GI + VP SAL G NV N +E
Sbjct: 170 NGFDERVFESIKADYLKFAEGIAFKPT--TXAFVPXSALKGDNVVNKSE 216
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 44/192 (22%)
Query: 118 VTIMGHVDHGKTTLLDTL------RNTSVVKSEFGGITQHIGAFVVTLKSGEQ------- 164
+ ++GHVDHGKT+L L R++ ++ GI+ +G ++ Q
Sbjct: 11 IGMVGHVDHGKTSLTKALTGVWTDRHSEELRR---GISIRLGYADCEIRKCPQCGTYTTK 67
Query: 165 ---------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR 209
V+F+D+PGH GA D +LV+AA++ + +
Sbjct: 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL 127
Query: 210 MARE--AKVPIIVAINKID-----KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262
MA E II+ NKID + + E+ K + +G E+ +PISA
Sbjct: 128 MALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV--KGTIAENA----PIIPISAHH 181
Query: 263 GTNVDNLTEAIE 274
N+D L +AI+
Sbjct: 182 EANIDVLLKAIQ 193
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 44/151 (29%)
Query: 120 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVT------------- 166
I+ H D GKTTL + L FGG Q G+ V K+ T
Sbjct: 36 IISHPDAGKTTLTEKL-------LLFGGAIQMAGS-VKARKAARHATSDWMAMERERGIS 87
Query: 167 ----------------FLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM 210
LDTPGH FS R D ++V+ A GV QT + + +
Sbjct: 88 VTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV 147
Query: 211 AREAKVPIIVAINKIDKPA-------ADIER 234
R P++ +NK+D+ A ADIE+
Sbjct: 148 CRMRATPVMTFVNKMDREALHPLDVMADIEQ 178
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 70/257 (27%)
Query: 78 SGMKYMVINPTNSVADDSNG----------------KDVERRPPAD----PSVLMKRPPV 117
+G+K + +N + A +NG K ++++ P D P + + P
Sbjct: 116 NGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPK 175
Query: 118 ----VTIMGHVDHGKTTLLDTL---------RNTSVVKSEFG------------------ 146
+ + GHVD GK+T+L + R+ + +E
Sbjct: 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEE 235
Query: 147 ----GITQHIGAFVVTLKSGEQVTFL-DTPGHAAFSNMRSRGAHCTDIVVLVVAA----- 196
G+T + + T +S +++ + D PGH F + GA D VLVV +
Sbjct: 236 ERARGVTMDVAS--TTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNF 293
Query: 197 DDGVME--QTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNML-LAQGITVEDLG-- 250
+ G +E QT E + R + I+V++NK+D + +R + + + ++ +G
Sbjct: 294 ERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFK 353
Query: 251 -GDIQAVPISALTGTNV 266
++ VPISA++GTN+
Sbjct: 354 TSNVHFVPISAISGTNL 370
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 165 VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
+ LDTPGHA F+ R D + V+ A GV +T++ + R PI INK
Sbjct: 84 INLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTPIXTFINK 143
Query: 225 IDK 227
D+
Sbjct: 144 XDR 146
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GKTTL + L + + G+T + G F T QVT +D PG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYS 62
Query: 176 FSNMRSRGA-----HCTDIV-----VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225
+ + S+ + C I+ +L+ D +E+ + E +P IVA+N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNXL 122
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277
DI +N+ + LG + +P+ + G ++ L AI+R K
Sbjct: 123 -----DIAEKQNIRIEIDALSARLGCPV--IPLVSTRGRGIEALKLAIDRYK 167
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVT-----------------LK 160
V ++GH GKTTL + L + K G + + T L
Sbjct: 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGA-HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII 219
G +V LD PG+ F RGA D ++ V+A+ GV T + +A +P +
Sbjct: 72 RGHRVFLLDAPGYGDFVG-EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 220 VAINKIDK 227
V + K+DK
Sbjct: 131 VVVTKLDK 138
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 30/193 (15%)
Query: 106 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNT-SVVKSEFGGITQHIGAFVVTLKSGEQ 164
AD +L+ R + I+G + GK+TLL+ L N + ++ G T+ + + + ++ G
Sbjct: 234 ADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-GIL 292
Query: 165 VTFLDTPGHAAFSN--MRSRGAHCT-------DIVVLVVAADDGVMEQ---TVESIRMAR 212
+DT G + +N + G T DIV+ V+ A + E+ +E I+ R
Sbjct: 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR 352
Query: 213 EAKVPIIVAINKID-KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271
+V INK+D + E KN LG D V ISAL G ++ L E
Sbjct: 353 -----YLVVINKVDVVEKINEEEIKN----------KLGTDRHMVKISALKGEGLEKLEE 397
Query: 272 AIERTKNMLLAQG 284
+I R + +G
Sbjct: 398 SIYRETQEIFERG 410
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GKTTL + L + + G+T + G F T QVT +D PG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYS 62
Query: 176 FSNMRSRGA-----HCTDIV-----VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225
+ + S+ + C I+ +L+ D +E+ + E +P IVA+N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277
DI +N+ + LG + +P+ + G ++ L AI+R K
Sbjct: 123 -----DIAEKQNIRIEIDALSARLGCPV--IPLVSTRGRGIEALKLAIDRYK 167
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GKTTL + L + + G+T + G F T QVT +D PG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYS 62
Query: 176 FSNMRSRGA-----HCTDIV-----VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225
+ + S+ + C I+ +L+ D +E+ + E +P IVA+N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277
DI +N+ + LG + +P+ + G ++ L AI+R K
Sbjct: 123 -----DIAEKQNIRIEIDALSARLGCPV--IPLVSTRGRGIEALKLAIDRYK 167
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 118 VTIMGHVDHGKTTLLD--TLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-A 174
V ++G+ + GK++LL T + + F ++ ++G VV + E+ T D PG
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSEEERFTLADIPGIIE 217
Query: 175 AFSNMRSRGAHC------TDIVVLVVAADDGVMEQTVESIRMAREA------KVPIIVAI 222
S + G T +++ V+ A D + +T+E++R A + P +VA+
Sbjct: 218 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPL-KTLETLRKEVGAYDPALLRRPSLVAL 276
Query: 223 NKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
NK+D +E LA + E L +P+SALTG + L EA+
Sbjct: 277 NKVDL----LEEEAVKALADALAREGLA----VLPVSALTGAGLPALKEAL 319
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 44/208 (21%)
Query: 103 RPPADPSVLMKRP-PVVT--IMGHVDHGKTTL-------LDTLRNTSVVK----SEFGGI 148
+ P D S +K P ++ ++GHVD GK+TL L+ + + + K SE G
Sbjct: 18 KKPHDISAFVKSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGK 77
Query: 149 TQHIGAFVVTLKSGEQ-------------------VTFLDTPGHAAFSNMRSRGAHCTDI 189
+ A++ + E+ T +D PGH F G D
Sbjct: 78 SSFKFAWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADX 137
Query: 190 VVLVVAADDGVME-------QTVESIRMAREAKV-PIIVAINK---IDKPAADIERTKNM 238
+L V E QT E +A + +I+A NK +D E K+
Sbjct: 138 AILCVDCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSK 197
Query: 239 LLAQGITVEDLGGDIQAVPISALTGTNV 266
LL + + +I VPIS +G V
Sbjct: 198 LLPYLVDIGFFEDNINWVPISGFSGEGV 225
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK----SGEQVT 166
L K+ + +G + GKTTLL L++ + QH+ T + +G T
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDR--------LGQHVPTLHPTSEELTIAGMTFT 72
Query: 167 FLDTPGH-AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESI--RMARE--AKVPIIVA 221
D GH A ++ IV LV AD + ++ E + M E A VPI++
Sbjct: 73 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132
Query: 222 INKIDKPAA-DIERTKNMLLAQGIT 245
NKID+P A ER + M G T
Sbjct: 133 GNKIDRPEAISEERLREMFGLYGQT 157
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 33/182 (18%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI---------------GAFVVTLKSG 162
+ G + GK+TL+ L V + + G+T+ I F L
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDXPGFGFXXGLPKE 63
Query: 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV---AADD--------GVMEQTVESIRMA 211
Q D H N ++ D+ VLVV AA + G + VE +
Sbjct: 64 VQERIKDEIVHFIEDNAKN-----IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118
Query: 212 REAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271
RE +P IVA+NK+DK +++ N LA+ V D +PISA G N++ L
Sbjct: 119 RELDIPTIVAVNKLDK-IKNVQEVIN-FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176
Query: 272 AI 273
I
Sbjct: 177 RI 178
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK----SGEQVT 166
L K+ + +G + GKTTLL L++ + QH+ T + +G T
Sbjct: 18 LYKKTGKLVFLGLDNAGKTTLLHMLKDDR--------LGQHVPTLHPTSEELTIAGMTFT 69
Query: 167 FLDTPGH-AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR--MARE--AKVPIIVA 221
D GH A ++ IV LV AD + ++ E + M E A VPI++
Sbjct: 70 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 129
Query: 222 INKIDKPAA-DIERTKNMLLAQGIT 245
NKID+P A ER + M G T
Sbjct: 130 GNKIDRPEAISEERLREMFGLYGQT 154
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
V ++G+ + GKTTL + L + G+T + G F T QVT +D PG +
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATT---DHQVTLVDLPGTYS 62
Query: 176 FSNMRSRGA-----HCTDIV-----VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225
+ + S+ + C I+ +L+ D +E+ + E +P +VA+N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADMLINVVDASNLERNLYLTLQLLELGIPCVVALNML 122
Query: 226 D 226
D
Sbjct: 123 D 123
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPG-- 172
P V I GH + GK+TLL L + + T+ I V + G + +DTPG
Sbjct: 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDGYFRYQIIDTPGLL 225
Query: 173 -----------HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK-----V 216
A +R G ++++ + + E I + E +
Sbjct: 226 DRPISERNEIEKQAILALRYLG----NLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281
Query: 217 PIIVAINKID-KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
P +V INKID +I+R + + +G+ + ISAL GT +D + E I +
Sbjct: 282 PFLVVINKIDVADEENIKRLEKFVKEKGLN---------PIKISALKGTGIDLVKEEIIK 332
Query: 276 TKNMLLAQGITVEDLGGDIQ 295
T LA+ + E + +++
Sbjct: 333 TLRP-LAEKVAREKIERELR 351
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 118 VTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-- 173
+ + G + GK++ ++ L +N S+V S++ G T + L VT +DTPG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95
Query: 174 -AAFSNMRSRGA----HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228
+R A + D +LV + E V + + +E ++P +V +NKID
Sbjct: 96 VGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV--VNLFKEMEIPFVVVVNKIDVL 153
Query: 229 AADIERTKNM 238
E K +
Sbjct: 154 GEKAEELKGL 163
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--HAA 175
V + G + GKT+L + L T + + G+T V T K G + +D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLG 66
Query: 176 FSNMRSRGAH------CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+S++ + A D+V+LV AD EQ++ + E + +I+A+ ID+
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILV--ADSVNPEQSLYLLLEILEMEKKVILAMTAIDEA- 123
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ M + + + LG I V S++TG ++ L E I
Sbjct: 124 ----KKTGMKIDRYELQKHLG--IPVVFTSSVTGEGLEELKEKI 161
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 79/246 (32%)
Query: 103 RPPADPSVLMKRP-PVVT--IMGHVDHGKTTLLDTLR------NTSVVK-----SEFGGI 148
+ P D S +K P ++ ++GHVD GK+TL+ L N S ++ SE G
Sbjct: 152 KKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK 211
Query: 149 TQHIGAFVVTLKSGEQ-------------------VTFLDTPGHAAFSNMRSRGAHCTDI 189
+ A+++ + E+ T +D PGH F G D+
Sbjct: 212 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADM 271
Query: 190 VVLVVAADDGVME-------QTVESIRMAREAKV-PIIVAINKIDKPAADIERTKNMLLA 241
+L V E QT E + +A + +I+A+NK+D
Sbjct: 272 AILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD--------------- 316
Query: 242 QGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISA 301
NVD + E K+ LL + + +I VPIS
Sbjct: 317 -----------------------NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISG 353
Query: 302 LTGTNV 307
+G V
Sbjct: 354 FSGEGV 359
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
Query: 116 PVVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGA------FVVTLKSGEQVTF 167
PVV I+G + GK+T+ + + S+V+ G I + + L +
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227
D P A D+++ V +GV E ++ K P+++A+NK+D
Sbjct: 64 GDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD- 122
Query: 228 PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI-ERTKNM 279
+ E N+ + G + PIS G + +L +A+ E KN+
Sbjct: 123 ---NTEXRANIYDFYSL------GFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 65/239 (27%)
Query: 103 RPPADPSVLMKRP-PVVT--IMGHVDHGKTTLLDTLR------NTSVVK-----SEFGGI 148
+ P D S +K P ++ ++GHVD GK+TL+ L N S ++ SE G
Sbjct: 18 KKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK 77
Query: 149 TQHIGAFVVTLKSGEQ-------------------VTFLDTPGHAAFSNMRSRGAHCTDI 189
+ A+++ + E+ T +D PGH F G D+
Sbjct: 78 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADM 137
Query: 190 VVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDL 249
+L V E + D + ++MLLA + + +L
Sbjct: 138 AILCVDCSTNAFESGFD-----------------------LDGQTKEHMLLASSLGIHNL 174
Query: 250 GGDIQAVPISALTGT-NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 307
I A+ NVD + E K+ LL + + +I VPIS +G V
Sbjct: 175 --------IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 116 PVVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGA------FVVTLKSGEQVTF 167
PVV I+G + GK+T+ + + S+V+ G I + + L +
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227
D P A D+++ +V +GV E ++ K P+++A+NK+D
Sbjct: 84 GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD- 142
Query: 228 PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI-ERTKNM 279
+ E N+ + G + PIS G + +L +A+ E KN+
Sbjct: 143 ---NTEMRANIYDFYSL------GFGEPYPISGTHGLGLGDLLDAVAEHFKNI 186
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--HAA 175
V + G + GKT+L + L T + + G+T V T K G + +D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLG 66
Query: 176 FSNMRSRGAH------CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+S++ + A D+V+LV AD EQ++ + E + +I+A+ ID+
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILV--ADSVNPEQSLYLLLEILEMEKKVILAMTAIDEA- 123
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ M + + + LG I V S++TG ++ L E I
Sbjct: 124 ----KKTGMKIDRYELQKHLG--IPVVFTSSVTGEGLEELKEKI 161
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170
L K+ + +G + GKTTLL L++ + + T H + +T+ TF
Sbjct: 12 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIAGMTFTTFDLG 68
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR--MARE--AKVPIIVAINKID 226
G A ++ IV LV AD + ++ E + M E A VPI++ NKID
Sbjct: 69 GGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 128
Query: 227 KPAA-DIERTKNMLLAQGIT 245
+P A ER + M G T
Sbjct: 129 RPEAISEERLREMFGLYGQT 148
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA--------KVPII 219
LDT GH +S MR + + + V A ++ ++ E I RE VP++
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNT---KSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 220 VAINKIDKPA--ADIERTKNMLLAQGI 244
+ NK D P+ D ++ +++ + GI
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLARSYGI 157
>pdb|2R47|A Chain A, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|B Chain B, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|C Chain C, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|D Chain D, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|E Chain E, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
Length = 157
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 144 EFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
EF GI +H+G F +K E++ F PG
Sbjct: 8 EFRGIKEHLGVFREAVKDAERIGFAGVPG 36
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--HAA 175
V + G + GKT+L + L T + + G+T V T K G + +D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLG 66
Query: 176 FSNMRSRGAH------CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+S++ + A D+V+LV AD EQ++ + E + +I+A ID+
Sbjct: 67 YSSIDEKIARDYLLKGDADLVILV--ADSVNPEQSLYLLLEILEXEKKVILAXTAIDEAK 124
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER--TKNMLLAQGITV 287
+ L + + I V S++TG ++ L E I KN +L + I
Sbjct: 125 KTGXKIDRYELQKHL-------GIPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRXIL- 176
Query: 288 EDLGGDIQA 296
D G +++
Sbjct: 177 -DYGEKVES 184
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 108 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR--NTSVVKSEFGGITQHIGAFVVTLKSGEQV 165
PS+ + ++ + G + GK++ ++ + N V F ++G F L +
Sbjct: 23 PSINPHKKTII-LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL---NKY 78
Query: 166 TFLDTPG--HAAFSNMRS-------RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV 216
+DTPG AF N + AH +++ ++ + E I + K
Sbjct: 79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS 138
Query: 217 -----PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
I++ NKIDK D N LL + I ++++ I+ S LTG V+
Sbjct: 139 VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI-LDNVKNPIKFSSFSTLTGVGVE 193
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 114 RPPV-VTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 147
+P V V +GHVDHGKTTL + T+V+ +GG
Sbjct: 2 KPHVNVGTIGHVDHGKTTLTAAI--TTVLAKTYGG 34
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG---- 172
V I+G + GK++L + L + S V ++ G+T+ + VV G + +DT G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG-RFLLVDTGGLWSG 62
Query: 173 ---HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
R ++V+ V + + E R P+I+ K+D P
Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122
Query: 230 ADI 232
++
Sbjct: 123 HEL 125
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GK+T+ + L +V + G+T + G F +GE+ +D PG +
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYS 66
Query: 176 FSNMRSRGAHCTDIVV------LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+ D ++ +V D +E+ + E +++A+NK+D
Sbjct: 67 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 126
Query: 230 A-----DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ D+++ + +L ++ VP+SA ++ L +AI
Sbjct: 127 SLGIEIDVDKLEKIL------------GVKVVPLSAAKKMGIEELKKAI 163
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 14/120 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V +G D GKT L L T + IT + V G +T +D PGH +
Sbjct: 10 VLFVGLCDSGKTLLFVRLL-TGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 68
Query: 178 -NMRSRGAHCTDIVVLVVAADDGVMEQTVESI----------RMAREAKVPIIVAINKID 226
+ R VV VV D ++ V+ + MA + +++A NK D
Sbjct: 69 FQLLDRFKSSARAVVFVV--DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GK+T+ + L +V + G+T + G F +GE+ +D PG +
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYS 62
Query: 176 FSNMRSRGAHCTDIVV-----LVV-AADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+ D ++ LVV D +E+ + E +++A+NK+D
Sbjct: 63 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122
Query: 230 A-----DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ D+++ + +L ++ VP+SA ++ L +AI
Sbjct: 123 SLGIEIDVDKLEKIL------------GVKVVPLSAAKKMGIEELKKAI 159
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT--QHIGAFVVTLKSGEQVTFLDTPGHAA 175
+ ++G+ + GK+T+ + L +V + G+T + G F +GE+ +D PG +
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYS 62
Query: 176 FSNMRSRGAHCTDIVV------LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+ D ++ +V D +E+ + E +++A+NK+D
Sbjct: 63 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122
Query: 230 A-----DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ D+++ + +L ++ VP+SA ++ L +AI
Sbjct: 123 SLGIEIDVDKLEKIL------------GVKVVPLSAAKKMGIEELKKAI 159
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVES-----IRMAREAKVPIIVAI 222
LDT G F++MR +LV + + Q ++ IR+ R KVP+I+
Sbjct: 56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Query: 223 NKID 226
NK+D
Sbjct: 116 NKVD 119
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK----SGEQVT 166
L K+ + +G + GKTTLL L++ + QH+ T + +G T
Sbjct: 31 LYKKSGKLVFLGLDNAGKTTLLHMLKDDR--------LGQHVPTLHPTSEELTIAGMTFT 82
Query: 167 FLDTPGH-AAFSNMRSRGAHCTDIVVLVVAADDG-VMEQTVE-SIRMARE--AKVPIIVA 221
D GH A ++ IV LV AD ++E VE + M E + VPI++
Sbjct: 83 TFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILIL 142
Query: 222 INKIDKPAA 230
NKID+ A
Sbjct: 143 GNKIDRTDA 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,287,956
Number of Sequences: 62578
Number of extensions: 790751
Number of successful extensions: 2401
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2152
Number of HSP's gapped (non-prelim): 209
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)