Query psy4665
Match_columns 673
No_of_seqs 555 out of 4340
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:38:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145|consensus 100.0 1E-115 3E-120 914.0 53.7 593 29-673 68-683 (683)
2 COG0532 InfB Translation initi 100.0 6.3E-99 1E-103 801.7 53.3 498 112-667 2-508 (509)
3 TIGR00487 IF-2 translation ini 100.0 1.2E-94 2.5E-99 810.7 65.3 554 43-666 26-586 (587)
4 PRK05306 infB translation init 100.0 9.7E-95 2.1E-99 827.0 65.1 546 41-665 235-787 (787)
5 CHL00189 infB translation init 100.0 6.9E-94 1.5E-98 812.4 62.9 558 41-666 178-742 (742)
6 PRK04004 translation initiatio 100.0 1.3E-80 2.8E-85 699.1 51.4 496 112-667 3-562 (586)
7 TIGR00491 aIF-2 translation in 100.0 1.1E-78 2.5E-83 679.9 51.2 487 113-658 2-551 (590)
8 PRK14845 translation initiatio 100.0 1E-70 2.2E-75 640.1 52.4 480 118-661 468-1012(1049)
9 KOG1144|consensus 100.0 6.9E-60 1.5E-64 506.0 30.4 503 111-657 471-1029(1064)
10 TIGR01394 TypA_BipA GTP-bindin 100.0 1.4E-32 2.9E-37 310.2 31.8 308 115-496 1-346 (594)
11 PRK00007 elongation factor G; 100.0 9.4E-33 2E-37 319.7 30.3 336 113-493 8-440 (693)
12 PRK00741 prfC peptide chain re 100.0 3.1E-32 6.7E-37 303.6 29.3 374 113-542 8-462 (526)
13 TIGR00484 EF-G translation elo 100.0 7E-32 1.5E-36 312.9 32.9 345 113-502 8-456 (689)
14 COG1160 Predicted GTPases [Gen 100.0 1E-32 2.2E-37 290.5 20.5 267 4-281 37-354 (444)
15 PRK12739 elongation factor G; 100.0 1.6E-31 3.4E-36 309.8 32.1 290 113-417 6-391 (691)
16 COG0480 FusA Translation elong 100.0 1.4E-31 2.9E-36 302.9 29.3 296 112-417 7-392 (697)
17 PRK10218 GTP-binding protein; 100.0 5.6E-31 1.2E-35 296.5 32.1 432 113-653 3-480 (607)
18 TIGR01393 lepA GTP-binding pro 100.0 7.5E-31 1.6E-35 296.9 32.4 297 114-494 2-326 (595)
19 COG0481 LepA Membrane GTPase L 100.0 8.7E-32 1.9E-36 279.6 22.6 253 112-419 6-285 (603)
20 KOG0462|consensus 100.0 3.3E-32 7.1E-37 287.3 19.3 251 113-417 58-332 (650)
21 COG5256 TEF1 Translation elong 100.0 1.5E-31 3.3E-36 276.7 23.2 276 114-430 6-329 (428)
22 TIGR00503 prfC peptide chain r 100.0 1.8E-30 3.9E-35 289.6 33.2 339 113-495 9-427 (527)
23 PRK05433 GTP-binding protein L 100.0 1.4E-30 2.9E-35 295.1 31.3 424 113-654 5-484 (600)
24 COG1217 TypA Predicted membran 100.0 5.9E-31 1.3E-35 272.6 23.5 263 113-419 3-294 (603)
25 PRK12317 elongation factor 1-a 100.0 8.6E-31 1.9E-35 288.5 24.8 266 113-421 4-314 (425)
26 PTZ00141 elongation factor 1- 100.0 1.3E-30 2.7E-35 286.4 23.6 262 113-418 5-319 (446)
27 PRK12736 elongation factor Tu; 100.0 3.9E-30 8.4E-35 279.7 26.6 264 112-418 9-298 (394)
28 PLN00043 elongation factor 1-a 100.0 2.6E-30 5.7E-35 283.7 24.2 274 113-429 5-331 (447)
29 PRK13351 elongation factor G; 100.0 1.3E-29 2.9E-34 294.6 31.0 294 113-417 6-390 (687)
30 PRK12735 elongation factor Tu; 100.0 6.7E-30 1.4E-34 278.0 26.4 265 113-418 10-300 (396)
31 CHL00071 tufA elongation facto 100.0 6.7E-30 1.5E-34 279.2 26.4 272 113-418 10-308 (409)
32 KOG0465|consensus 100.0 1.8E-30 4E-35 276.7 19.1 337 113-491 37-466 (721)
33 PLN03127 Elongation factor Tu; 100.0 1.9E-29 4.2E-34 276.6 27.1 261 113-418 59-351 (447)
34 TIGR00485 EF-Tu translation el 100.0 1.5E-29 3.2E-34 275.5 25.2 262 113-418 10-298 (394)
35 TIGR00483 EF-1_alpha translati 100.0 1.3E-29 2.8E-34 279.1 24.5 265 112-419 4-314 (426)
36 PLN03126 Elongation factor Tu; 100.0 2.6E-29 5.6E-34 276.7 26.8 271 112-418 78-377 (478)
37 PRK00049 elongation factor Tu; 100.0 3.3E-29 7.1E-34 272.4 26.3 265 113-418 10-300 (396)
38 PRK10512 selenocysteinyl-tRNA- 100.0 6.1E-29 1.3E-33 282.0 28.2 248 117-418 2-261 (614)
39 PRK12740 elongation factor G; 100.0 2.2E-28 4.9E-33 283.9 30.3 342 121-503 1-438 (668)
40 TIGR00475 selB selenocysteine- 100.0 1.3E-28 2.9E-33 278.6 27.6 251 116-417 1-261 (581)
41 TIGR02034 CysN sulfate adenyly 100.0 2.8E-29 6E-34 273.8 21.2 265 117-422 2-305 (406)
42 COG4108 PrfC Peptide chain rel 100.0 3.2E-28 7E-33 251.3 26.2 295 113-418 10-383 (528)
43 PRK05124 cysN sulfate adenylyl 100.0 1.6E-28 3.4E-33 271.9 24.6 266 113-419 25-330 (474)
44 PTZ00327 eukaryotic translatio 100.0 5E-28 1.1E-32 264.7 23.5 258 114-422 33-356 (460)
45 PRK07560 elongation factor EF- 100.0 3.5E-27 7.6E-32 274.9 28.2 321 113-486 18-415 (731)
46 COG2895 CysN GTPases - Sulfate 100.0 6.8E-28 1.5E-32 242.9 16.3 279 113-434 4-323 (431)
47 PLN00116 translation elongatio 100.0 1E-26 2.2E-31 273.9 28.6 343 113-502 17-537 (843)
48 TIGR03680 eif2g_arch translati 100.0 8.8E-27 1.9E-31 254.4 25.2 258 114-422 3-318 (406)
49 PRK05506 bifunctional sulfate 99.9 4.8E-27 1E-31 270.3 22.3 274 114-428 23-335 (632)
50 COG0050 TufB GTPases - transla 99.9 4.5E-27 9.7E-32 231.2 16.3 270 114-431 11-310 (394)
51 PRK04000 translation initiatio 99.9 3.3E-26 7.3E-31 249.6 24.8 264 114-428 8-329 (411)
52 PF11987 IF-2: Translation-ini 99.9 4.6E-28 1E-32 212.2 7.3 98 456-553 11-108 (108)
53 TIGR00490 aEF-2 translation el 99.9 4.9E-26 1.1E-30 264.6 24.7 323 113-493 17-422 (720)
54 COG5258 GTPBP1 GTPase [General 99.9 2.4E-26 5.1E-31 233.3 18.9 339 56-433 64-452 (527)
55 KOG0464|consensus 99.9 2.8E-27 6E-32 241.1 10.6 300 113-423 35-425 (753)
56 KOG0458|consensus 99.9 2.1E-25 4.5E-30 238.8 24.1 265 114-415 176-488 (603)
57 COG3276 SelB Selenocysteine-sp 99.9 1.3E-25 2.9E-30 234.4 22.1 249 117-419 2-258 (447)
58 PTZ00416 elongation factor 2; 99.9 6.9E-25 1.5E-29 258.0 28.2 325 113-486 17-507 (836)
59 KOG0460|consensus 99.9 2E-25 4.4E-30 223.5 17.0 268 114-430 53-353 (449)
60 COG2262 HflX GTPases [General 99.9 7.6E-27 1.6E-31 242.5 6.7 242 26-281 93-359 (411)
61 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-26 3.7E-31 246.2 9.3 232 26-275 90-349 (351)
62 PRK11058 GTPase HflX; Provisio 99.9 3.4E-26 7.3E-31 249.2 9.2 236 26-277 98-361 (426)
63 TIGR03594 GTPase_EngA ribosome 99.9 3.2E-24 6.9E-29 237.3 21.7 265 4-280 33-346 (429)
64 cd01886 EF-G Elongation factor 99.9 3.1E-24 6.7E-29 221.0 17.0 197 117-318 1-267 (270)
65 PF00009 GTP_EFTU: Elongation 99.9 1.5E-24 3.3E-29 212.5 14.0 162 114-276 2-185 (188)
66 PRK03003 GTP-binding protein D 99.9 1.1E-23 2.4E-28 234.6 21.2 265 4-280 72-384 (472)
67 cd04168 TetM_like Tet(M)-like 99.9 9.1E-24 2E-28 213.8 17.0 199 117-319 1-235 (237)
68 PRK00093 GTP-binding protein D 99.9 1.4E-22 2.9E-27 224.6 21.4 265 4-280 35-346 (435)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1E-22 2.3E-27 194.9 17.8 163 116-278 1-166 (168)
70 PRK09518 bifunctional cytidyla 99.9 8.8E-23 1.9E-27 237.7 20.7 265 4-280 309-623 (712)
71 cd04169 RF3 RF3 subfamily. Pe 99.9 1.5E-22 3.3E-27 208.3 17.2 203 115-318 2-264 (267)
72 KOG0461|consensus 99.9 4.1E-22 8.9E-27 199.8 17.9 235 115-388 7-264 (522)
73 COG1159 Era GTPase [General fu 99.9 2.5E-21 5.5E-26 194.3 21.1 239 113-376 4-256 (298)
74 PRK15494 era GTPase Era; Provi 99.9 5.1E-21 1.1E-25 203.9 23.7 239 113-376 50-300 (339)
75 COG5257 GCD11 Translation init 99.9 1.5E-21 3.3E-26 194.7 16.9 259 114-423 9-325 (415)
76 cd04170 EF-G_bact Elongation f 99.9 1.6E-21 3.4E-26 202.0 17.4 201 117-318 1-265 (268)
77 cd04171 SelB SelB subfamily. 99.9 3.1E-21 6.8E-26 183.7 17.6 157 116-275 1-163 (164)
78 cd01884 EF_Tu EF-Tu subfamily. 99.9 2E-21 4.3E-26 190.9 16.1 151 116-267 3-172 (195)
79 cd04166 CysN_ATPS CysN_ATPS su 99.9 9E-22 1.9E-26 196.0 13.4 149 117-269 1-185 (208)
80 KOG1143|consensus 99.9 2.8E-21 6.1E-26 195.4 16.2 360 29-422 74-496 (591)
81 cd01891 TypA_BipA TypA (tyrosi 99.9 3.9E-21 8.4E-26 189.4 15.5 153 115-270 2-174 (194)
82 cd01890 LepA LepA subfamily. 99.9 1.1E-20 2.4E-25 183.1 17.6 155 116-276 1-175 (179)
83 TIGR00436 era GTP-binding prot 99.9 6.6E-20 1.4E-24 190.0 23.7 235 117-376 2-248 (270)
84 PF02421 FeoB_N: Ferrous iron 99.9 7.7E-21 1.7E-25 177.8 13.9 143 116-273 1-156 (156)
85 cd03692 mtIF2_IVc mtIF2_IVc: t 99.8 5.4E-21 1.2E-25 161.0 10.5 84 569-656 1-84 (84)
86 cd01883 EF1_alpha Eukaryotic e 99.8 8.3E-21 1.8E-25 190.6 13.7 148 117-268 1-195 (219)
87 COG1160 Predicted GTPases [Gen 99.8 4.6E-20 1E-24 195.1 18.4 208 116-339 4-221 (444)
88 cd01889 SelB_euk SelB subfamil 99.8 2.6E-20 5.7E-25 183.1 15.4 162 116-277 1-185 (192)
89 KOG0459|consensus 99.8 7.4E-21 1.6E-25 194.9 11.4 279 112-431 76-404 (501)
90 cd04124 RabL2 RabL2 subfamily. 99.8 3.1E-19 6.8E-24 170.2 18.7 153 116-277 1-157 (161)
91 cd01888 eIF2_gamma eIF2-gamma 99.8 1.4E-19 3.1E-24 179.4 15.5 158 116-276 1-197 (203)
92 COG1084 Predicted GTPase [Gene 99.8 1.6E-20 3.4E-25 189.8 8.4 240 28-276 58-334 (346)
93 KOG0463|consensus 99.8 8.2E-21 1.8E-25 192.1 6.3 352 57-448 80-484 (641)
94 cd01864 Rab19 Rab19 subfamily. 99.8 3.9E-19 8.5E-24 170.0 17.6 153 115-275 3-163 (165)
95 cd00881 GTP_translation_factor 99.8 4.8E-19 1E-23 172.7 17.5 159 117-276 1-185 (189)
96 cd04120 Rab12 Rab12 subfamily. 99.8 1E-18 2.2E-23 172.8 19.7 153 117-278 2-163 (202)
97 PRK00089 era GTPase Era; Revie 99.8 1.5E-18 3.3E-23 182.1 22.2 238 114-376 4-253 (292)
98 cd01897 NOG NOG1 is a nucleola 99.8 5.8E-19 1.3E-23 169.1 17.4 152 116-276 1-166 (168)
99 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.3E-18 2.8E-23 172.4 19.7 155 116-278 1-168 (201)
100 cd01894 EngA1 EngA1 subfamily. 99.8 5.2E-19 1.1E-23 166.9 16.1 147 119-276 1-156 (157)
101 cd04106 Rab23_lke Rab23-like s 99.8 8.4E-19 1.8E-23 166.9 17.6 150 117-275 2-160 (162)
102 cd01867 Rab8_Rab10_Rab13_like 99.8 8.3E-19 1.8E-23 168.3 17.7 154 115-277 3-164 (167)
103 KOG0084|consensus 99.8 6.1E-19 1.3E-23 165.6 15.6 159 113-281 7-175 (205)
104 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.8E-19 1E-23 169.6 15.1 156 117-275 1-166 (167)
105 PTZ00369 Ras-like protein; Pro 99.8 1.3E-18 2.8E-23 170.6 18.5 159 114-282 4-171 (189)
106 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1E-18 2.3E-23 166.5 17.2 150 116-276 3-162 (164)
107 cd01866 Rab2 Rab2 subfamily. 99.8 1.8E-18 4E-23 166.1 18.6 153 116-277 5-165 (168)
108 cd01885 EF2 EF2 (for archaea a 99.8 4.7E-19 1E-23 177.0 14.5 113 116-228 1-138 (222)
109 cd04119 RJL RJL (RabJ-Like) su 99.8 2.2E-18 4.7E-23 164.6 18.5 152 116-276 1-165 (168)
110 cd04122 Rab14 Rab14 subfamily. 99.8 1.8E-18 4E-23 165.6 18.0 152 116-276 3-162 (166)
111 cd04154 Arl2 Arl2 subfamily. 99.8 8.6E-19 1.9E-23 169.2 15.9 154 113-274 12-171 (173)
112 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.2E-18 4.8E-23 165.0 18.5 153 116-277 3-163 (166)
113 cd01879 FeoB Ferrous iron tran 99.8 5.4E-19 1.2E-23 167.3 14.0 147 120-277 1-156 (158)
114 KOG0094|consensus 99.8 1.3E-18 2.8E-23 162.6 16.1 155 114-277 21-184 (221)
115 cd01861 Rab6 Rab6 subfamily. 99.8 2.4E-18 5.2E-23 163.5 18.5 151 117-276 2-160 (161)
116 cd04138 H_N_K_Ras_like H-Ras/N 99.8 9.2E-19 2E-23 166.1 15.6 150 116-276 2-160 (162)
117 cd04113 Rab4 Rab4 subfamily. 99.8 1.8E-18 4E-23 164.6 17.4 151 116-275 1-159 (161)
118 cd04140 ARHI_like ARHI subfami 99.8 1.8E-18 3.9E-23 165.6 17.4 150 116-275 2-162 (165)
119 cd04175 Rap1 Rap1 subgroup. T 99.8 2.1E-18 4.6E-23 164.7 17.8 152 116-277 2-162 (164)
120 cd04144 Ras2 Ras2 subfamily. 99.8 1.6E-18 3.5E-23 170.1 17.3 157 117-284 1-169 (190)
121 cd00877 Ran Ran (Ras-related n 99.8 2.3E-18 5E-23 165.2 18.0 153 116-277 1-158 (166)
122 cd01865 Rab3 Rab3 subfamily. 99.8 2.5E-18 5.4E-23 164.6 18.0 152 116-276 2-161 (165)
123 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.7E-18 3.6E-23 167.3 16.8 152 115-277 2-163 (172)
124 cd04133 Rop_like Rop subfamily 99.8 1.9E-18 4.1E-23 167.3 17.1 153 116-277 2-172 (176)
125 PRK03003 GTP-binding protein D 99.8 2.6E-18 5.6E-23 191.6 20.6 189 113-316 36-233 (472)
126 smart00173 RAS Ras subfamily o 99.8 2.4E-18 5.2E-23 164.2 17.5 152 116-277 1-161 (164)
127 cd04136 Rap_like Rap-like subf 99.8 2E-18 4.3E-23 164.3 16.8 151 116-276 2-161 (163)
128 smart00175 RAB Rab subfamily o 99.8 4.9E-18 1.1E-22 161.7 18.8 153 116-277 1-161 (164)
129 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.4E-18 3E-23 174.5 15.6 158 117-275 1-220 (224)
130 cd01868 Rab11_like Rab11-like. 99.8 3.8E-18 8.3E-23 163.0 18.1 153 115-276 3-163 (165)
131 cd04157 Arl6 Arl6 subfamily. 99.8 2.2E-18 4.8E-23 163.9 16.3 152 117-275 1-161 (162)
132 cd01895 EngA2 EngA2 subfamily. 99.8 4E-18 8.7E-23 163.3 18.2 158 114-276 1-173 (174)
133 cd04134 Rho3 Rho3 subfamily. 99.8 1.1E-18 2.3E-23 171.3 14.4 162 116-278 1-174 (189)
134 cd01874 Cdc42 Cdc42 subfamily. 99.8 3.3E-18 7.2E-23 165.6 17.7 157 116-276 2-173 (175)
135 cd04127 Rab27A Rab27a subfamil 99.8 3.3E-18 7.1E-23 166.0 17.6 154 115-277 4-176 (180)
136 cd04121 Rab40 Rab40 subfamily. 99.8 4.9E-18 1.1E-22 166.2 18.9 155 114-278 5-167 (189)
137 cd01875 RhoG RhoG subfamily. 99.8 4.3E-18 9.4E-23 167.2 18.2 159 115-277 3-176 (191)
138 cd04149 Arf6 Arf6 subfamily. 99.8 2.4E-18 5.3E-23 165.4 15.9 154 114-275 8-167 (168)
139 cd04109 Rab28 Rab28 subfamily. 99.8 4.8E-18 1E-22 170.1 18.7 154 116-278 1-166 (215)
140 cd01862 Rab7 Rab7 subfamily. 99.8 6.8E-18 1.5E-22 162.2 18.9 154 116-277 1-166 (172)
141 cd00879 Sar1 Sar1 subfamily. 99.8 2E-18 4.4E-23 169.2 15.5 160 113-276 17-189 (190)
142 cd04132 Rho4_like Rho4-like su 99.8 5.9E-18 1.3E-22 165.4 18.6 156 116-280 1-169 (187)
143 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 4.3E-18 9.3E-23 165.7 17.4 154 114-276 4-178 (182)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.5E-18 9.8E-23 165.9 17.6 159 115-277 3-169 (183)
145 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.8E-18 1E-22 161.8 17.4 151 117-275 2-158 (159)
146 cd04151 Arl1 Arl1 subfamily. 99.8 2.4E-18 5.2E-23 163.4 15.3 151 117-275 1-157 (158)
147 KOG0092|consensus 99.8 3.1E-18 6.7E-23 160.3 15.5 157 113-278 3-167 (200)
148 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.9E-18 8.5E-23 164.3 16.6 158 117-279 2-166 (170)
149 cd04116 Rab9 Rab9 subfamily. 99.8 6.4E-18 1.4E-22 162.4 18.0 154 114-275 4-168 (170)
150 cd01898 Obg Obg subfamily. Th 99.8 4.1E-18 8.8E-23 163.5 16.2 153 117-276 2-169 (170)
151 smart00174 RHO Rho (Ras homolo 99.8 5E-18 1.1E-22 163.7 16.8 149 118-276 1-170 (174)
152 PRK04213 GTP-binding protein; 99.8 4.9E-18 1.1E-22 168.1 17.1 157 114-277 8-191 (201)
153 cd04110 Rab35 Rab35 subfamily. 99.8 9.1E-18 2E-22 166.1 18.7 155 115-278 6-167 (199)
154 cd04114 Rab30 Rab30 subfamily. 99.8 7.9E-18 1.7E-22 161.4 17.8 154 114-276 6-167 (169)
155 cd04131 Rnd Rnd subfamily. Th 99.8 7.1E-18 1.5E-22 163.7 17.5 152 116-276 2-174 (178)
156 KOG0394|consensus 99.8 3.4E-18 7.3E-23 158.2 14.3 156 113-277 7-177 (210)
157 cd04142 RRP22 RRP22 subfamily. 99.8 4.6E-18 1E-22 167.9 16.3 153 116-276 1-172 (198)
158 smart00177 ARF ARF-like small 99.8 1E-17 2.2E-22 162.2 18.4 155 114-276 12-172 (175)
159 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.4E-18 1.2E-22 163.9 16.4 153 115-275 15-173 (174)
160 PLN03071 GTP-binding nuclear p 99.8 8.9E-18 1.9E-22 168.6 18.5 157 113-278 11-172 (219)
161 cd04161 Arl2l1_Arl13_like Arl2 99.8 5.4E-18 1.2E-22 162.8 15.9 154 117-275 1-166 (167)
162 cd01878 HflX HflX subfamily. 99.8 4.5E-18 9.7E-23 168.8 15.8 152 113-276 39-203 (204)
163 cd01871 Rac1_like Rac1-like su 99.8 8.9E-18 1.9E-22 162.5 17.4 158 116-275 2-172 (174)
164 cd01863 Rab18 Rab18 subfamily. 99.8 1E-17 2.2E-22 159.4 17.5 151 116-275 1-159 (161)
165 cd04139 RalA_RalB RalA/RalB su 99.8 7.7E-18 1.7E-22 160.2 16.5 152 116-277 1-161 (164)
166 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.4E-17 3.1E-22 160.3 18.3 154 115-276 2-167 (170)
167 cd01860 Rab5_related Rab5-rela 99.8 1.4E-17 3E-22 158.6 18.1 152 116-276 2-161 (163)
168 cd04112 Rab26 Rab26 subfamily. 99.8 1.2E-17 2.6E-22 164.0 18.0 154 116-278 1-163 (191)
169 cd04135 Tc10 TC10 subfamily. 99.8 9.4E-18 2E-22 161.8 16.9 160 116-276 1-172 (174)
170 cd04156 ARLTS1 ARLTS1 subfamil 99.8 7.6E-18 1.6E-22 160.0 15.8 153 117-275 1-159 (160)
171 PLN00223 ADP-ribosylation fact 99.8 1.4E-17 2.9E-22 162.2 17.7 156 113-277 15-177 (181)
172 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.6E-17 3.4E-22 167.2 18.6 156 114-278 12-188 (232)
173 cd04128 Spg1 Spg1p. Spg1p (se 99.8 8.7E-18 1.9E-22 163.7 16.3 155 116-277 1-165 (182)
174 cd00878 Arf_Arl Arf (ADP-ribos 99.8 6.6E-18 1.4E-22 160.2 15.1 151 117-275 1-157 (158)
175 cd04117 Rab15 Rab15 subfamily. 99.8 1.4E-17 3E-22 158.9 17.3 151 117-276 2-160 (161)
176 cd04176 Rap2 Rap2 subgroup. T 99.8 1E-17 2.3E-22 159.7 16.4 150 116-276 2-161 (163)
177 cd04158 ARD1 ARD1 subfamily. 99.8 1.1E-17 2.5E-22 160.8 16.7 153 117-276 1-159 (169)
178 cd04111 Rab39 Rab39 subfamily. 99.8 2E-17 4.3E-22 165.1 18.9 159 115-282 2-170 (211)
179 PRK00093 GTP-binding protein D 99.8 1.7E-17 3.7E-22 183.9 20.2 185 116-316 2-195 (435)
180 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-17 2.8E-22 184.6 19.2 185 117-316 1-194 (429)
181 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.3E-17 5.1E-22 157.3 18.4 152 117-276 2-162 (164)
182 PRK12299 obgE GTPase CgtA; Rev 99.8 1.3E-17 2.9E-22 176.5 18.4 158 115-278 158-328 (335)
183 KOG0078|consensus 99.8 1.3E-17 2.7E-22 159.3 16.2 157 113-279 10-175 (207)
184 smart00178 SAR Sar1p-like memb 99.8 1.2E-17 2.6E-22 163.0 16.2 159 113-275 15-182 (184)
185 KOG0098|consensus 99.8 9.9E-18 2.1E-22 155.4 14.5 160 115-284 6-174 (216)
186 cd01893 Miro1 Miro1 subfamily. 99.8 1E-17 2.2E-22 160.6 15.4 155 117-276 2-162 (166)
187 cd04123 Rab21 Rab21 subfamily. 99.8 2.7E-17 5.8E-22 156.0 18.1 152 116-276 1-160 (162)
188 PTZ00133 ADP-ribosylation fact 99.8 3E-17 6.5E-22 160.0 18.4 157 114-278 16-178 (182)
189 smart00176 RAN Ran (Ras-relate 99.8 1.8E-17 3.9E-22 163.6 17.0 149 121-278 1-154 (200)
190 cd00157 Rho Rho (Ras homology) 99.8 1.8E-17 3.9E-22 159.0 16.6 151 116-275 1-170 (171)
191 cd04118 Rab24 Rab24 subfamily. 99.8 5.3E-17 1.2E-21 159.6 20.0 154 117-280 2-168 (193)
192 cd04125 RabA_like RabA-like su 99.8 3.2E-17 7E-22 160.5 18.4 155 116-279 1-163 (188)
193 cd04126 Rab20 Rab20 subfamily. 99.8 4.1E-17 9E-22 163.2 19.1 160 116-280 1-192 (220)
194 TIGR03598 GTPase_YsxC ribosome 99.8 1.4E-17 3.1E-22 161.8 15.4 148 113-267 16-179 (179)
195 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.5E-17 5.5E-22 155.2 16.5 145 116-276 2-155 (157)
196 cd00154 Rab Rab family. Rab G 99.8 3.2E-17 6.8E-22 154.3 17.1 150 116-274 1-158 (159)
197 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.8E-17 3.8E-22 158.8 15.5 139 118-262 2-144 (164)
198 cd04159 Arl10_like Arl10-like 99.8 2.8E-17 6.1E-22 154.8 16.6 152 118-275 2-158 (159)
199 cd01870 RhoA_like RhoA-like su 99.7 3.3E-17 7.1E-22 158.1 17.2 158 116-276 2-173 (175)
200 cd04177 RSR1 RSR1 subgroup. R 99.7 3.2E-17 6.9E-22 157.4 17.0 152 116-276 2-162 (168)
201 cd04143 Rhes_like Rhes_like su 99.7 2.1E-17 4.6E-22 168.5 16.6 155 116-280 1-173 (247)
202 PRK05291 trmE tRNA modificatio 99.7 1.4E-17 3E-22 183.9 16.3 149 114-279 214-371 (449)
203 PLN03118 Rab family protein; P 99.7 6.2E-17 1.3E-21 161.6 19.2 154 114-277 13-176 (211)
204 cd01892 Miro2 Miro2 subfamily. 99.7 2.4E-17 5.2E-22 158.7 15.7 154 114-276 3-164 (169)
205 PLN03108 Rab family protein; P 99.7 8.8E-17 1.9E-21 160.4 20.2 158 115-281 6-171 (210)
206 PLN03110 Rab GTPase; Provision 99.7 7.3E-17 1.6E-21 161.7 19.2 160 114-281 11-177 (216)
207 cd04146 RERG_RasL11_like RERG/ 99.7 2.3E-17 4.9E-22 157.8 14.8 149 117-276 1-162 (165)
208 cd04130 Wrch_1 Wrch-1 subfamil 99.7 5.1E-17 1.1E-21 156.8 17.3 150 116-274 1-170 (173)
209 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 4.8E-17 1E-21 162.9 17.3 158 116-277 2-175 (222)
210 TIGR00231 small_GTP small GTP- 99.7 3.2E-17 7E-22 153.7 15.1 149 116-274 2-160 (161)
211 cd04167 Snu114p Snu114p subfam 99.7 1.8E-17 4E-22 165.7 14.1 113 116-228 1-136 (213)
212 cd04147 Ras_dva Ras-dva subfam 99.7 2.8E-17 6.1E-22 162.4 15.1 155 117-278 1-163 (198)
213 PRK15467 ethanolamine utilizat 99.7 2E-17 4.2E-22 157.4 13.5 144 117-281 3-150 (158)
214 cd04137 RheB Rheb (Ras Homolog 99.7 3.7E-17 8E-22 158.7 15.7 155 116-280 2-165 (180)
215 TIGR00450 mnmE_trmE_thdF tRNA 99.7 6.2E-17 1.4E-21 177.7 18.9 154 113-281 201-363 (442)
216 TIGR02729 Obg_CgtA Obg family 99.7 4.8E-17 1E-21 172.2 17.2 154 115-276 157-327 (329)
217 COG0486 ThdF Predicted GTPase 99.7 3E-17 6.4E-22 174.3 15.3 156 112-280 214-378 (454)
218 PRK09518 bifunctional cytidyla 99.7 1.1E-16 2.4E-21 186.7 21.7 191 113-316 273-472 (712)
219 cd04155 Arl3 Arl3 subfamily. 99.7 5.3E-17 1.1E-21 156.4 15.7 154 114-275 13-172 (173)
220 PRK12298 obgE GTPase CgtA; Rev 99.7 9.8E-17 2.1E-21 173.2 19.2 185 116-318 160-360 (390)
221 PF00025 Arf: ADP-ribosylation 99.7 1.2E-16 2.7E-21 154.6 18.0 157 113-276 12-174 (175)
222 cd04163 Era Era subfamily. Er 99.7 1.5E-16 3.2E-21 151.1 17.2 156 115-276 3-167 (168)
223 PRK12297 obgE GTPase CgtA; Rev 99.7 2.3E-16 5E-21 171.2 20.8 152 116-277 159-326 (424)
224 COG0218 Predicted GTPase [Gene 99.7 2.2E-16 4.7E-21 150.9 17.3 158 113-277 22-196 (200)
225 TIGR02528 EutP ethanolamine ut 99.7 6.2E-17 1.4E-21 150.8 12.4 133 117-274 2-141 (142)
226 cd01881 Obg_like The Obg-like 99.7 9.6E-17 2.1E-21 154.6 13.9 150 120-275 1-174 (176)
227 KOG0080|consensus 99.7 1.2E-16 2.7E-21 144.2 13.4 154 115-277 11-173 (209)
228 PRK12296 obgE GTPase CgtA; Rev 99.7 2.3E-16 4.9E-21 173.2 18.2 157 115-279 159-341 (500)
229 PRK09554 feoB ferrous iron tra 99.7 1.3E-16 2.8E-21 185.3 17.1 152 115-277 3-167 (772)
230 KOG0093|consensus 99.7 3.3E-16 7.2E-21 139.3 15.4 159 115-282 21-187 (193)
231 KOG0410|consensus 99.7 2.7E-17 5.8E-22 164.9 8.8 231 27-279 81-342 (410)
232 cd00876 Ras Ras family. The R 99.7 2.9E-16 6.3E-21 148.6 15.6 149 117-275 1-158 (160)
233 cd00880 Era_like Era (E. coli 99.7 2.7E-16 5.9E-21 147.5 15.0 153 120-276 1-162 (163)
234 KOG1423|consensus 99.7 7E-16 1.5E-20 153.8 18.3 248 111-376 68-355 (379)
235 PRK00454 engB GTP-binding prot 99.7 5.3E-16 1.1E-20 152.7 16.7 156 113-277 22-193 (196)
236 cd04129 Rho2 Rho2 subfamily. 99.7 7E-16 1.5E-20 151.0 16.9 153 116-277 2-172 (187)
237 KOG0095|consensus 99.7 2.7E-16 5.9E-21 140.0 12.5 154 115-276 7-167 (213)
238 cd04148 RGK RGK subfamily. Th 99.7 8.3E-16 1.8E-20 154.5 17.8 152 116-278 1-163 (221)
239 KOG0079|consensus 99.7 5.4E-16 1.2E-20 138.1 13.9 156 115-279 8-170 (198)
240 KOG0087|consensus 99.7 4.4E-16 9.5E-21 147.9 14.2 154 114-277 13-175 (222)
241 COG2229 Predicted GTPase [Gene 99.7 1.2E-15 2.6E-20 142.5 16.3 156 112-274 7-174 (187)
242 PF00071 Ras: Ras family; Int 99.7 1.6E-15 3.5E-20 144.3 17.6 151 117-277 1-160 (162)
243 KOG0086|consensus 99.7 8.8E-16 1.9E-20 137.3 14.1 171 115-291 9-185 (214)
244 TIGR00437 feoB ferrous iron tr 99.7 4.6E-16 9.9E-21 176.9 14.9 145 122-277 1-154 (591)
245 cd01873 RhoBTB RhoBTB subfamil 99.7 2.6E-15 5.7E-20 147.8 17.4 149 116-275 3-193 (195)
246 PTZ00132 GTP-binding nuclear p 99.6 7.6E-15 1.6E-19 147.0 19.1 155 114-277 8-167 (215)
247 cd04103 Centaurin_gamma Centau 99.6 4.4E-15 9.6E-20 141.2 15.8 147 117-275 2-156 (158)
248 KOG0467|consensus 99.6 4.3E-15 9.4E-20 163.2 17.4 114 113-227 7-136 (887)
249 COG0370 FeoB Fe2+ transport sy 99.6 3.2E-15 7E-20 165.3 16.1 148 115-277 3-163 (653)
250 KOG0091|consensus 99.6 2.2E-15 4.7E-20 136.6 11.7 161 115-284 8-179 (213)
251 PF10662 PduV-EutP: Ethanolami 99.6 2.1E-15 4.5E-20 138.1 11.1 135 116-274 2-142 (143)
252 cd01896 DRG The developmentall 99.6 8.5E-15 1.8E-19 148.2 16.3 145 117-276 2-224 (233)
253 cd04105 SR_beta Signal recogni 99.6 8.8E-15 1.9E-19 145.1 15.7 159 116-275 1-202 (203)
254 cd01876 YihA_EngB The YihA (En 99.6 1.8E-14 3.8E-19 137.1 16.8 152 118-276 2-169 (170)
255 cd00882 Ras_like_GTPase Ras-li 99.6 5.9E-15 1.3E-19 136.6 13.2 150 120-274 1-156 (157)
256 KOG0468|consensus 99.6 2.8E-14 6.1E-19 154.1 20.0 116 112-227 125-261 (971)
257 KOG0469|consensus 99.6 1.9E-14 4.2E-19 150.8 18.2 115 113-227 17-162 (842)
258 KOG1489|consensus 99.6 5.4E-15 1.2E-19 148.5 13.5 154 114-275 195-364 (366)
259 KOG0075|consensus 99.6 6.3E-15 1.4E-19 131.3 11.0 157 116-278 21-182 (186)
260 cd04102 RabL3 RabL3 (Rab-like3 99.6 2E-14 4.2E-19 142.0 15.2 113 117-229 2-143 (202)
261 KOG0466|consensus 99.6 8.1E-16 1.8E-20 152.5 5.3 239 113-402 36-341 (466)
262 KOG0070|consensus 99.6 1.2E-14 2.5E-19 136.2 11.8 159 112-278 14-178 (181)
263 KOG0073|consensus 99.6 4.4E-14 9.6E-19 128.6 14.9 155 113-276 14-176 (185)
264 PF01926 MMR_HSR1: 50S ribosom 99.6 3.1E-14 6.8E-19 128.0 13.0 106 117-224 1-116 (116)
265 KOG0088|consensus 99.5 9.8E-15 2.1E-19 131.5 7.8 156 114-278 12-175 (218)
266 KOG0395|consensus 99.5 1.1E-13 2.4E-18 135.7 15.2 157 114-280 2-167 (196)
267 PLN00023 GTP-binding protein; 99.5 1.3E-13 2.9E-18 142.8 15.9 117 113-229 19-165 (334)
268 KOG0097|consensus 99.5 2.5E-13 5.5E-18 120.0 14.3 160 114-283 10-178 (215)
269 COG1100 GTPase SAR1 and relate 99.5 2.8E-13 6E-18 135.8 15.7 165 116-280 6-187 (219)
270 KOG1191|consensus 99.5 1.3E-13 2.8E-18 146.1 12.5 164 113-280 266-452 (531)
271 KOG0081|consensus 99.5 5.9E-14 1.3E-18 126.6 8.2 157 117-282 11-185 (219)
272 cd04104 p47_IIGP_like p47 (47- 99.5 4.2E-13 9.1E-18 132.5 14.5 159 115-277 1-183 (197)
273 COG0536 Obg Predicted GTPase [ 99.5 3.5E-13 7.6E-18 137.4 13.9 153 117-280 161-335 (369)
274 COG1163 DRG Predicted GTPase [ 99.5 6.8E-13 1.5E-17 134.2 14.8 152 113-278 61-289 (365)
275 PRK09866 hypothetical protein; 99.5 8.9E-13 1.9E-17 145.3 16.8 111 163-275 230-350 (741)
276 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 8.8E-13 1.9E-17 130.1 15.1 162 116-279 1-185 (196)
277 KOG0076|consensus 99.4 2.5E-13 5.4E-18 125.0 8.6 163 113-279 15-188 (197)
278 PF14578 GTP_EFTU_D4: Elongati 99.4 3.8E-13 8.2E-18 109.9 8.2 79 567-656 3-81 (81)
279 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.5E-12 3.2E-17 131.1 14.3 142 113-265 37-183 (225)
280 cd03702 IF2_mtIF2_II This fami 99.4 1.2E-12 2.6E-17 112.0 11.4 83 332-423 2-87 (95)
281 KOG0083|consensus 99.4 1.6E-13 3.5E-18 120.2 6.2 154 120-282 2-164 (192)
282 PF08477 Miro: Miro-like prote 99.4 4.6E-13 9.9E-18 120.6 8.9 109 117-226 1-119 (119)
283 KOG0393|consensus 99.4 7.1E-13 1.5E-17 127.4 10.1 161 114-277 3-178 (198)
284 COG3596 Predicted GTPase [Gene 99.4 7.1E-13 1.5E-17 131.7 10.1 166 112-277 36-221 (296)
285 PTZ00099 rab6; Provisional 99.4 7.1E-12 1.5E-16 121.3 15.6 130 140-278 5-142 (176)
286 cd01899 Ygr210 Ygr210 subfamil 99.4 8.3E-12 1.8E-16 131.3 16.2 81 118-198 1-111 (318)
287 KOG4252|consensus 99.4 3.1E-13 6.8E-18 124.3 3.8 162 112-282 17-185 (246)
288 KOG0071|consensus 99.4 1.1E-11 2.4E-16 109.9 12.7 155 114-276 16-176 (180)
289 PF09439 SRPRB: Signal recogni 99.3 3E-12 6.6E-17 122.7 9.7 121 114-239 2-137 (181)
290 cd03701 IF2_IF5B_II IF2_IF5B_I 99.3 1.4E-11 3E-16 106.0 11.3 83 332-423 2-87 (95)
291 KOG1490|consensus 99.3 5.9E-13 1.3E-17 140.8 3.3 239 29-276 59-339 (620)
292 KOG0090|consensus 99.3 2E-11 4.3E-16 116.6 11.1 159 113-276 36-237 (238)
293 cd01850 CDC_Septin CDC/Septin. 99.3 8.1E-11 1.8E-15 122.0 16.0 113 115-229 4-157 (276)
294 KOG0074|consensus 99.2 3.4E-11 7.3E-16 107.0 9.8 156 113-275 15-176 (185)
295 KOG1532|consensus 99.2 4.2E-11 9.1E-16 118.1 11.1 173 110-282 14-268 (366)
296 PRK09602 translation-associate 99.2 1.6E-10 3.5E-15 125.3 15.1 82 116-197 2-113 (396)
297 COG4917 EutP Ethanolamine util 99.2 4.7E-11 1E-15 104.2 8.2 137 116-275 2-143 (148)
298 KOG3883|consensus 99.2 9.7E-10 2.1E-14 99.1 15.4 158 112-278 6-175 (198)
299 KOG0072|consensus 99.2 6.3E-11 1.4E-15 105.7 7.6 156 114-277 17-178 (182)
300 PTZ00258 GTP-binding protein; 99.2 6.1E-10 1.3E-14 119.4 15.9 85 113-197 19-126 (390)
301 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 8.1E-10 1.8E-14 110.7 14.1 162 117-282 1-177 (232)
302 KOG0096|consensus 99.1 2.3E-10 4.9E-15 107.1 9.2 156 114-277 9-168 (216)
303 KOG0077|consensus 99.1 2.6E-10 5.5E-15 104.5 9.3 158 113-274 18-189 (193)
304 PRK13768 GTPase; Provisional 99.1 3.1E-10 6.8E-15 116.3 11.1 113 164-276 98-245 (253)
305 cd01853 Toc34_like Toc34-like 99.1 1.4E-09 3.1E-14 110.7 15.0 115 113-228 29-162 (249)
306 KOG2486|consensus 99.1 2.8E-10 6E-15 113.0 9.2 162 112-277 133-315 (320)
307 PRK09435 membrane ATPase/prote 99.1 6.8E-10 1.5E-14 117.0 12.6 116 162-284 148-266 (332)
308 smart00053 DYNc Dynamin, GTPas 99.1 2.1E-09 4.6E-14 108.4 14.7 129 113-242 24-218 (240)
309 PF03029 ATP_bind_1: Conserved 99.0 3.2E-10 6.9E-15 114.8 7.6 114 164-277 92-236 (238)
310 TIGR00991 3a0901s02IAP34 GTP-b 99.0 7.6E-09 1.7E-13 107.0 14.9 115 113-228 36-166 (313)
311 TIGR02836 spore_IV_A stage IV 99.0 5.2E-09 1.1E-13 110.4 13.6 141 113-261 15-218 (492)
312 TIGR00073 hypB hydrogenase acc 99.0 3.4E-09 7.3E-14 105.5 11.6 150 112-276 19-205 (207)
313 PF00350 Dynamin_N: Dynamin fa 99.0 2.7E-09 5.9E-14 102.2 10.5 62 164-225 102-168 (168)
314 KOG1707|consensus 99.0 5.4E-10 1.2E-14 121.0 5.4 159 111-280 5-177 (625)
315 KOG1673|consensus 98.9 6E-09 1.3E-13 94.3 10.0 155 115-275 20-183 (205)
316 TIGR00750 lao LAO/AO transport 98.9 1.6E-08 3.6E-13 106.3 14.9 112 162-280 126-240 (300)
317 cd03690 Tet_II Tet_II: This su 98.9 7.7E-09 1.7E-13 87.4 8.7 77 328-414 1-84 (85)
318 PF04548 AIG1: AIG1 family; I 98.9 1.6E-08 3.5E-13 101.0 12.1 111 117-229 2-130 (212)
319 cd01900 YchF YchF subfamily. 98.8 5E-09 1.1E-13 107.8 7.5 81 118-198 1-104 (274)
320 COG0012 Predicted GTPase, prob 98.8 3.2E-08 6.9E-13 103.5 13.5 84 115-198 2-109 (372)
321 cd04092 mtEFG2_II_like mtEFG2_ 98.8 1.7E-08 3.7E-13 84.9 8.9 75 331-415 1-83 (83)
322 COG1703 ArgK Putative periplas 98.8 4.5E-08 9.7E-13 99.0 13.1 167 112-285 48-261 (323)
323 cd03689 RF3_II RF3_II: this su 98.8 1.8E-08 4E-13 85.0 8.6 73 333-415 1-84 (85)
324 PRK09601 GTP-binding protein Y 98.8 1.3E-08 2.8E-13 108.1 9.4 82 116-197 3-107 (364)
325 PF05049 IIGP: Interferon-indu 98.8 2.5E-08 5.3E-13 106.0 10.8 159 112-274 32-214 (376)
326 cd03703 aeIF5B_II aeIF5B_II: T 98.8 5.9E-08 1.3E-12 84.5 11.2 83 332-423 2-102 (110)
327 TIGR00101 ureG urease accessor 98.8 5.7E-08 1.2E-12 95.9 12.7 100 163-276 92-194 (199)
328 PF03308 ArgK: ArgK protein; 98.8 8.2E-09 1.8E-13 103.1 6.7 162 113-283 27-235 (266)
329 KOG1486|consensus 98.8 1E-07 2.2E-12 93.2 13.5 87 112-199 59-152 (364)
330 cd03699 lepA_II lepA_II: This 98.8 4.5E-08 9.7E-13 82.9 9.8 78 331-414 1-85 (86)
331 KOG4423|consensus 98.7 1.8E-09 3.9E-14 100.7 0.3 158 114-279 24-195 (229)
332 cd04088 EFG_mtEFG_II EFG_mtEFG 98.7 7.2E-08 1.6E-12 81.1 8.9 74 331-414 1-82 (83)
333 cd03691 BipA_TypA_II BipA_TypA 98.7 7.3E-08 1.6E-12 81.7 9.0 74 331-414 1-85 (86)
334 cd04091 mtEFG1_II_like mtEFG1_ 98.7 9.4E-08 2E-12 80.0 8.7 72 331-414 1-80 (81)
335 COG5192 BMS1 GTP-binding prote 98.7 2E-07 4.2E-12 100.1 13.0 140 112-263 66-211 (1077)
336 COG0378 HypB Ni2+-binding GTPa 98.7 1.1E-07 2.3E-12 90.8 9.2 77 189-276 120-199 (202)
337 KOG3886|consensus 98.6 4.9E-08 1.1E-12 94.5 6.9 149 114-262 3-163 (295)
338 PRK10463 hydrogenase nickel in 98.6 2.7E-07 5.8E-12 95.0 11.7 150 112-276 101-287 (290)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 6.5E-08 1.4E-12 90.1 5.2 127 37-173 4-138 (141)
340 TIGR00993 3a0901s04IAP86 chlor 98.6 1.3E-06 2.8E-11 97.7 15.9 113 115-229 118-250 (763)
341 cd03693 EF1_alpha_II EF1_alpha 98.5 5.3E-07 1.2E-11 77.2 9.9 83 328-418 2-90 (91)
342 cd01859 MJ1464 MJ1464. This f 98.5 9.5E-07 2.1E-11 83.6 11.8 120 177-315 3-122 (156)
343 cd03693 EF1_alpha_II EF1_alpha 98.5 7.3E-07 1.6E-11 76.4 8.6 81 570-656 6-87 (91)
344 PF00735 Septin: Septin; Inte 98.5 8.5E-07 1.8E-11 92.1 10.8 113 116-229 5-156 (281)
345 TIGR00157 ribosome small subun 98.4 7.3E-07 1.6E-11 91.0 9.4 119 173-317 23-143 (245)
346 cd04178 Nucleostemin_like Nucl 98.4 4E-07 8.7E-12 87.6 6.9 57 113-173 115-172 (172)
347 KOG1954|consensus 98.4 2E-06 4.4E-11 88.6 12.2 116 114-229 57-225 (532)
348 cd03696 selB_II selB_II: this 98.4 1.2E-06 2.5E-11 73.7 8.3 80 571-656 3-83 (83)
349 cd03698 eRF3_II_like eRF3_II_l 98.4 2E-06 4.4E-11 72.3 9.3 77 330-415 1-83 (83)
350 cd01858 NGP_1 NGP-1. Autoanti 98.4 7.4E-07 1.6E-11 84.5 7.1 56 114-173 101-157 (157)
351 cd03694 GTPBP_II Domain II of 98.4 2.1E-06 4.6E-11 72.8 8.9 77 331-414 1-86 (87)
352 cd01855 YqeH YqeH. YqeH is an 98.3 3.8E-06 8.3E-11 82.3 11.4 129 171-317 19-150 (190)
353 cd01858 NGP_1 NGP-1. Autoanti 98.3 7E-06 1.5E-10 77.8 12.7 119 182-316 4-124 (157)
354 TIGR00092 GTP-binding protein 98.3 1.4E-06 3.1E-11 92.7 8.2 83 116-198 3-109 (368)
355 PF03193 DUF258: Protein of un 98.3 6.9E-07 1.5E-11 84.2 5.0 94 70-178 3-102 (161)
356 cd01342 Translation_Factor_II_ 98.3 4.8E-06 1E-10 68.7 9.5 80 571-655 3-82 (83)
357 KOG1487|consensus 98.3 2.9E-06 6.4E-11 83.6 8.3 85 115-200 59-150 (358)
358 KOG1491|consensus 98.3 2.2E-06 4.7E-11 88.0 7.6 84 115-198 20-126 (391)
359 cd01855 YqeH YqeH. YqeH is an 98.3 1.2E-06 2.6E-11 85.8 5.7 56 114-173 126-190 (190)
360 cd04090 eEF2_II_snRNP Loc2 eEF 98.2 4.5E-06 9.7E-11 72.0 8.1 68 332-406 2-87 (94)
361 cd03695 CysN_NodQ_II CysN_NodQ 98.2 8.2E-06 1.8E-10 68.2 9.4 78 571-655 3-80 (81)
362 cd01856 YlqF YlqF. Proteins o 98.2 8.8E-06 1.9E-10 78.4 10.8 135 170-316 2-137 (171)
363 cd01849 YlqF_related_GTPase Yl 98.2 2.3E-06 5.1E-11 80.9 6.6 57 113-173 98-155 (155)
364 cd01849 YlqF_related_GTPase Yl 98.2 1.4E-05 2.9E-10 75.7 11.5 121 188-316 1-122 (155)
365 TIGR03596 GTPase_YlqF ribosome 98.2 1E-05 2.2E-10 84.2 11.5 135 171-316 5-140 (276)
366 cd04089 eRF3_II eRF3_II: domai 98.2 1E-05 2.2E-10 67.8 9.3 75 330-414 1-81 (82)
367 cd03700 eEF2_snRNP_like_II EF2 98.2 6.2E-06 1.3E-10 70.9 7.9 72 332-413 2-91 (93)
368 KOG0052|consensus 98.2 6.2E-06 1.3E-10 86.7 9.0 115 114-229 6-156 (391)
369 cd03696 selB_II selB_II: this 98.2 1.3E-05 2.9E-10 67.3 9.2 76 331-414 1-82 (83)
370 PRK09563 rbgA GTPase YlqF; Rev 98.1 4.2E-06 9.2E-11 87.5 7.5 57 113-173 119-176 (287)
371 cd01856 YlqF YlqF. Proteins o 98.1 5.1E-06 1.1E-10 80.0 7.1 57 113-173 113-170 (171)
372 cd03695 CysN_NodQ_II CysN_NodQ 98.1 2.2E-05 4.7E-10 65.6 9.9 75 332-414 2-80 (81)
373 PRK12289 GTPase RsgA; Reviewed 98.1 8.1E-06 1.8E-10 87.3 9.0 106 183-315 86-193 (352)
374 cd03694 GTPBP_II Domain II of 98.1 1.3E-05 2.9E-10 67.9 8.5 81 571-655 3-86 (87)
375 TIGR03596 GTPase_YlqF ribosome 98.1 5.1E-06 1.1E-10 86.4 7.0 56 114-173 117-173 (276)
376 cd03698 eRF3_II_like eRF3_II_l 98.1 1.9E-05 4.1E-10 66.3 9.2 78 571-655 4-82 (83)
377 TIGR03597 GTPase_YqeH ribosome 98.1 3E-06 6.4E-11 91.5 5.3 110 116-229 155-280 (360)
378 COG1161 Predicted GTPases [Gen 98.1 4.5E-06 9.7E-11 88.6 6.1 57 113-173 130-187 (322)
379 PRK09563 rbgA GTPase YlqF; Rev 98.1 2E-05 4.2E-10 82.5 10.7 136 170-316 7-143 (287)
380 cd03697 EFTU_II EFTU_II: Elong 98.1 1.5E-05 3.3E-10 67.6 8.1 77 332-416 2-86 (87)
381 KOG0448|consensus 98.1 2.2E-05 4.7E-10 87.3 11.1 119 111-230 105-276 (749)
382 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.4E-05 5.2E-10 72.7 9.6 96 181-315 6-104 (141)
383 cd04089 eRF3_II eRF3_II: domai 98.0 2.9E-05 6.4E-10 65.0 8.8 77 571-655 4-81 (82)
384 cd01851 GBP Guanylate-binding 98.0 1.1E-05 2.5E-10 81.1 7.5 85 114-198 6-103 (224)
385 PRK00098 GTPase RsgA; Reviewed 98.0 2.1E-05 4.5E-10 82.8 8.7 107 183-315 77-185 (298)
386 COG5019 CDC3 Septin family pro 98.0 6.3E-05 1.4E-09 78.6 11.6 116 113-229 21-176 (373)
387 PRK10416 signal recognition pa 98.0 6.3E-05 1.4E-09 79.5 11.8 145 113-271 112-303 (318)
388 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3.3E-05 7.2E-10 80.8 9.6 108 183-317 75-184 (287)
389 PLN00043 elongation factor 1-a 97.9 0.00022 4.9E-09 79.1 16.3 178 468-656 90-316 (447)
390 PF03144 GTP_EFTU_D2: Elongati 97.9 3.4E-05 7.4E-10 63.1 7.3 64 345-414 1-74 (74)
391 cd03697 EFTU_II EFTU_II: Elong 97.9 2.9E-05 6.3E-10 65.9 7.0 81 571-655 3-84 (87)
392 TIGR00064 ftsY signal recognit 97.9 8.3E-05 1.8E-09 77.0 11.6 144 113-270 70-260 (272)
393 PRK12289 GTPase RsgA; Reviewed 97.9 1.6E-05 3.6E-10 85.0 6.3 58 116-177 173-238 (352)
394 COG1162 Predicted GTPases [Gen 97.9 2.9E-05 6.3E-10 79.9 7.5 60 115-178 164-231 (301)
395 KOG3905|consensus 97.9 0.00024 5.3E-09 72.5 13.9 156 113-276 50-288 (473)
396 smart00010 small_GTPase Small 97.9 1.6E-05 3.4E-10 71.5 5.0 112 116-267 1-115 (124)
397 KOG2655|consensus 97.9 9.9E-05 2.2E-09 77.8 11.5 115 115-230 21-173 (366)
398 PRK12736 elongation factor Tu; 97.9 0.00041 8.9E-09 76.0 16.9 184 469-656 81-295 (394)
399 cd01342 Translation_Factor_II_ 97.9 0.00012 2.7E-09 60.1 9.7 75 332-414 2-82 (83)
400 PRK12288 GTPase RsgA; Reviewed 97.9 7.2E-05 1.6E-09 80.0 10.2 108 184-316 118-227 (347)
401 TIGR00483 EF-1_alpha translati 97.8 0.00033 7.1E-09 77.7 15.4 183 468-657 90-311 (426)
402 TIGR03597 GTPase_YqeH ribosome 97.8 7.3E-05 1.6E-09 80.7 9.8 125 173-317 50-177 (360)
403 smart00275 G_alpha G protein a 97.8 0.00026 5.6E-09 75.9 13.7 130 147-277 169-333 (342)
404 TIGR01425 SRP54_euk signal rec 97.8 9.1E-05 2E-09 80.7 10.4 113 114-228 99-252 (429)
405 PRK12288 GTPase RsgA; Reviewed 97.8 3.2E-05 6.9E-10 82.7 6.7 58 116-177 206-271 (347)
406 TIGR00485 EF-Tu translation el 97.8 0.0007 1.5E-08 74.2 17.0 181 469-656 81-295 (394)
407 KOG1547|consensus 97.8 0.00023 5E-09 69.8 11.4 112 115-228 46-197 (336)
408 TIGR00157 ribosome small subun 97.8 3E-05 6.5E-10 79.1 5.8 57 116-177 121-185 (245)
409 PRK13796 GTPase YqeH; Provisio 97.8 2.8E-05 6.1E-10 84.1 5.9 56 115-174 160-221 (365)
410 KOG1424|consensus 97.8 2.2E-05 4.8E-10 84.8 4.9 61 115-179 314-377 (562)
411 PLN03126 Elongation factor Tu; 97.8 0.00062 1.3E-08 76.0 16.3 190 461-657 145-375 (478)
412 cd00066 G-alpha G protein alph 97.8 0.00026 5.7E-09 75.1 12.8 130 147-277 146-310 (317)
413 PLN03127 Elongation factor Tu; 97.8 0.00072 1.6E-08 75.0 16.7 185 469-657 130-349 (447)
414 cd01859 MJ1464 MJ1464. This f 97.8 6.5E-05 1.4E-09 71.0 7.2 56 114-173 100-156 (156)
415 PRK14974 cell division protein 97.8 0.00018 3.9E-09 76.4 11.2 97 162-272 222-324 (336)
416 PF05783 DLIC: Dynein light in 97.7 0.00066 1.4E-08 75.2 15.7 83 114-199 24-113 (472)
417 cd03112 CobW_like The function 97.7 0.00014 3E-09 69.1 9.1 62 163-227 87-158 (158)
418 KOG0447|consensus 97.7 0.00045 9.7E-09 74.7 13.6 136 110-245 303-512 (980)
419 PRK01889 GTPase RsgA; Reviewed 97.7 0.00028 6.1E-09 76.0 12.0 108 184-317 110-218 (356)
420 PRK14722 flhF flagellar biosyn 97.7 0.00015 3.2E-09 77.9 9.4 131 112-243 134-308 (374)
421 KOG0082|consensus 97.7 0.00055 1.2E-08 72.2 13.4 80 147-227 180-274 (354)
422 PTZ00141 elongation factor 1- 97.7 0.00058 1.3E-08 75.8 14.2 183 468-657 90-317 (446)
423 PF03144 GTP_EFTU_D2: Elongati 97.7 0.00012 2.5E-09 60.0 6.4 67 587-654 2-73 (74)
424 PRK12735 elongation factor Tu; 97.7 0.0014 3E-08 71.9 16.8 183 469-657 81-298 (396)
425 PRK12317 elongation factor 1-a 97.7 0.0012 2.5E-08 73.3 16.3 182 468-656 89-308 (425)
426 PRK00049 elongation factor Tu; 97.7 0.0016 3.4E-08 71.5 17.1 181 469-656 81-297 (396)
427 KOG1707|consensus 97.6 0.00053 1.2E-08 75.4 12.5 157 112-279 422-584 (625)
428 PRK10512 selenocysteinyl-tRNA- 97.6 0.0012 2.5E-08 76.3 15.4 179 468-656 56-258 (614)
429 cd03692 mtIF2_IVc mtIF2_IVc: t 97.6 0.00076 1.6E-08 56.7 10.0 74 332-413 2-82 (84)
430 PF00448 SRP54: SRP54-type pro 97.5 0.00021 4.5E-09 70.3 7.1 79 162-243 83-167 (196)
431 TIGR00475 selB selenocysteine- 97.5 0.0024 5.1E-08 73.4 16.6 179 468-654 55-257 (581)
432 cd03688 eIF2_gamma_II eIF2_gam 97.5 0.0007 1.5E-08 59.0 9.2 79 327-413 2-104 (113)
433 CHL00071 tufA elongation facto 97.5 0.0026 5.7E-08 70.0 16.3 182 469-657 81-306 (409)
434 PRK04000 translation initiatio 97.5 0.0039 8.6E-08 68.6 17.0 184 468-655 90-315 (411)
435 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00022 4.8E-09 74.6 6.8 59 115-177 161-227 (287)
436 cd03114 ArgK-like The function 97.4 0.00038 8.2E-09 65.3 7.4 58 162-226 91-148 (148)
437 COG3276 SelB Selenocysteine-sp 97.4 0.00046 1E-08 73.8 8.8 107 545-657 147-255 (447)
438 PRK00098 GTPase RsgA; Reviewed 97.4 0.00021 4.5E-09 75.2 6.0 58 115-176 164-229 (298)
439 cd03115 SRP The signal recogni 97.4 0.0011 2.4E-08 63.8 9.9 66 162-229 82-153 (173)
440 KOG2485|consensus 97.3 0.00027 5.9E-09 72.2 5.3 59 114-173 142-206 (335)
441 PRK13796 GTPase YqeH; Provisio 97.3 0.00079 1.7E-08 72.9 9.1 123 174-317 57-183 (365)
442 COG3640 CooC CO dehydrogenase 97.3 0.0022 4.8E-08 63.3 11.1 61 165-228 136-198 (255)
443 PRK00771 signal recognition pa 97.2 0.00033 7.1E-09 77.1 5.2 113 113-228 93-245 (437)
444 PRK11537 putative GTP-binding 97.2 0.0026 5.7E-08 67.4 11.8 126 113-242 2-176 (318)
445 PTZ00327 eukaryotic translatio 97.2 0.012 2.5E-07 65.5 16.8 189 468-656 122-349 (460)
446 PRK12727 flagellar biosynthesi 97.1 0.0033 7.1E-08 70.0 11.7 128 112-243 347-511 (559)
447 PRK05124 cysN sulfate adenylyl 97.1 0.0069 1.5E-07 67.9 14.5 181 468-656 112-326 (474)
448 TIGR03348 VI_IcmF type VI secr 97.1 0.00071 1.5E-08 83.9 7.3 115 113-228 109-256 (1169)
449 TIGR02034 CysN sulfate adenyly 97.1 0.014 3.1E-07 64.1 16.6 183 468-657 85-299 (406)
450 KOG2484|consensus 97.1 0.00029 6.4E-09 74.1 3.0 57 113-173 250-307 (435)
451 PF14578 GTP_EFTU_D4: Elongati 97.1 0.0051 1.1E-07 50.7 9.3 76 329-414 3-80 (81)
452 PRK11889 flhF flagellar biosyn 97.1 0.0013 2.8E-08 70.5 7.3 127 113-242 239-403 (436)
453 COG5256 TEF1 Translation elong 97.0 0.0032 6.8E-08 67.1 9.3 107 544-660 211-318 (428)
454 TIGR03680 eif2g_arch translati 97.0 0.024 5.2E-07 62.4 16.4 185 468-656 85-311 (406)
455 PRK05506 bifunctional sulfate 96.9 0.03 6.5E-07 65.3 17.5 181 468-656 109-322 (632)
456 PRK12726 flagellar biosynthesi 96.9 0.003 6.5E-08 67.5 8.1 25 113-137 204-228 (407)
457 cd03110 Fer4_NifH_child This p 96.9 0.006 1.3E-07 58.9 9.7 81 161-243 91-171 (179)
458 KOG2423|consensus 96.9 0.00035 7.6E-09 73.0 0.9 58 112-173 304-362 (572)
459 COG1419 FlhF Flagellar GTP-bin 96.9 0.0057 1.2E-07 65.5 10.0 126 114-242 202-364 (407)
460 COG0523 Putative GTPases (G3E 96.8 0.01 2.2E-07 62.7 11.8 136 115-260 1-184 (323)
461 cd02036 MinD Bacterial cell di 96.8 0.0099 2.2E-07 57.1 10.9 65 164-230 64-129 (179)
462 cd04178 Nucleostemin_like Nucl 96.8 0.0072 1.6E-07 58.2 9.6 42 188-229 1-44 (172)
463 TIGR00959 ffh signal recogniti 96.8 0.0044 9.5E-08 68.1 8.6 64 162-228 182-252 (428)
464 PF09547 Spore_IV_A: Stage IV 96.7 0.019 4.1E-07 61.6 12.8 141 113-261 15-218 (492)
465 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0039 8.5E-08 60.4 7.2 79 163-242 85-170 (178)
466 COG1162 Predicted GTPases [Gen 96.7 0.0067 1.5E-07 62.7 9.1 108 184-316 77-186 (301)
467 PRK10867 signal recognition pa 96.7 0.0064 1.4E-07 66.9 9.3 64 162-228 183-253 (433)
468 TIGR01393 lepA GTP-binding pro 96.7 0.049 1.1E-06 62.8 16.6 180 468-656 75-275 (595)
469 PRK12723 flagellar biosynthesi 96.6 0.011 2.4E-07 64.1 10.5 125 113-242 172-338 (388)
470 TIGR02475 CobW cobalamin biosy 96.6 0.011 2.3E-07 63.4 10.3 25 114-138 3-27 (341)
471 KOG3887|consensus 96.6 0.011 2.5E-07 58.2 9.1 109 116-229 28-149 (347)
472 cd02038 FleN-like FleN is a me 96.6 0.014 3.1E-07 53.9 9.6 103 119-227 4-109 (139)
473 PRK14721 flhF flagellar biosyn 96.5 0.014 3.1E-07 63.8 10.6 127 113-243 189-353 (420)
474 COG3523 IcmF Type VI protein s 96.5 0.0044 9.5E-08 75.0 7.1 115 114-229 124-270 (1188)
475 PRK05433 GTP-binding protein L 96.5 0.065 1.4E-06 61.8 16.5 181 468-658 79-281 (600)
476 PRK13695 putative NTPase; Prov 96.5 0.015 3.3E-07 55.9 9.5 41 183-225 93-136 (174)
477 cd02042 ParA ParA and ParB of 96.5 0.0093 2E-07 52.0 7.2 82 118-209 2-84 (104)
478 cd04092 mtEFG2_II_like mtEFG2_ 96.5 0.021 4.6E-07 47.7 9.0 78 575-655 4-82 (83)
479 PRK12724 flagellar biosynthesi 96.5 0.0079 1.7E-07 65.3 7.9 125 114-242 222-385 (432)
480 PRK05703 flhF flagellar biosyn 96.5 0.013 2.7E-07 64.8 9.6 128 114-244 220-385 (424)
481 KOG1534|consensus 96.4 0.0063 1.4E-07 58.9 6.0 66 164-229 99-178 (273)
482 cd04088 EFG_mtEFG_II EFG_mtEFG 96.4 0.027 5.8E-07 47.1 9.1 77 576-655 5-82 (83)
483 KOG3859|consensus 96.4 0.0079 1.7E-07 60.5 6.6 114 114-229 41-190 (406)
484 KOG0460|consensus 96.4 0.0049 1.1E-07 63.7 5.2 103 542-652 231-335 (449)
485 PF00503 G-alpha: G-protein al 96.3 0.028 6E-07 61.6 11.3 130 147-276 220-388 (389)
486 cd03111 CpaE_like This protein 96.3 0.022 4.8E-07 50.1 8.3 97 121-224 6-106 (106)
487 TIGR01394 TypA_BipA GTP-bindin 96.2 0.12 2.6E-06 59.5 16.2 179 469-657 70-287 (594)
488 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.019 4E-07 48.6 7.2 77 118-207 2-79 (99)
489 cd03688 eIF2_gamma_II eIF2_gam 96.1 0.031 6.6E-07 48.9 8.3 71 570-640 7-91 (113)
490 PRK06731 flhF flagellar biosyn 96.1 0.032 7E-07 57.6 10.0 126 114-242 74-237 (270)
491 COG1618 Predicted nucleotide k 96.1 0.068 1.5E-06 50.0 10.8 24 114-137 4-27 (179)
492 PRK14723 flhF flagellar biosyn 96.0 0.037 7.9E-07 64.6 10.6 128 114-243 184-350 (767)
493 PRK01889 GTPase RsgA; Reviewed 95.9 0.0076 1.6E-07 65.0 4.5 24 116-139 196-219 (356)
494 PRK06995 flhF flagellar biosyn 95.9 0.017 3.6E-07 64.3 7.2 126 114-243 255-418 (484)
495 COG1161 Predicted GTPases [Gen 95.9 0.039 8.4E-07 58.7 9.7 137 167-317 14-155 (322)
496 PF05621 TniB: Bacterial TniB 95.8 0.033 7.1E-07 57.8 8.4 100 112-224 58-189 (302)
497 PF06858 NOG1: Nucleolar GTP-b 95.8 0.023 4.9E-07 43.6 5.3 42 185-226 12-58 (58)
498 PRK10751 molybdopterin-guanine 95.7 0.047 1E-06 52.4 8.2 26 113-138 4-29 (173)
499 cd04091 mtEFG1_II_like mtEFG1_ 95.6 0.093 2E-06 43.6 8.7 75 575-654 4-79 (81)
500 cd02037 MRP-like MRP (Multiple 95.5 0.058 1.3E-06 51.5 8.2 67 161-227 66-133 (169)
No 1
>KOG1145|consensus
Probab=100.00 E-value=1.4e-115 Score=914.02 Aligned_cols=593 Identities=47% Similarity=0.726 Sum_probs=524.9
Q ss_pred cccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCcccCcCCcccccCCCCC
Q psy4665 29 IYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADDSNGKDVERRPPAD 107 (673)
Q Consensus 29 ~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (673)
|.-.++..-.....++..++++.++.+..+..+++.++.. ++.++...++.++.+.. +.+.. .+....+..++++.+
T Consensus 68 m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~-~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~a~ 145 (683)
T KOG1145|consen 68 MTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTK-GILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPEAD 145 (683)
T ss_pred ccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchH-HHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCccC
Confidence 4445555555568888999999998765555555456655 77788999999988877 44432 233445677888888
Q ss_pred CccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccC
Q psy4665 108 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCT 187 (673)
Q Consensus 108 ~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~a 187 (673)
++.+.+|||.|.||||++||||||+++|+++.+...+.+|||++++++.+.+++|.+++|+|||||..|..|+.|++..+
T Consensus 146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 146 PKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred HhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++||+.++||+++||.+.+++++..++|+|+++||||+++++++++.++|..+++.++++|++++++
T Consensus 226 DIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvi----------- 294 (683)
T KOG1145|consen 226 DIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVI----------- 294 (683)
T ss_pred cEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEE-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEE
Q psy4665 268 NLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKL 347 (673)
Q Consensus 268 ~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v 347 (673)
|+||++|.|++.|.+++..+++.++++++|.+|+.|+|+|+..++++|.+
T Consensus 295 ------------------------------piSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 295 ------------------------------PISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred ------------------------------EeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 55556667777888888999999999999999999999999999999999
Q ss_pred EEEEeeecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHH
Q psy4665 348 ATALVQRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFD 424 (673)
Q Consensus 348 ~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~ 424 (673)
++++|.+|||++|+.+++|.+|+|||.|+ |+++++|.||++ |. +.||+++|. +||.+..++++..+.+
T Consensus 345 aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i~~A~Ps~p------v~-V~GwkdlP~--aGD~vleVeSe~~Ar~ 415 (683)
T KOG1145|consen 345 ATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPIDEATPSQP------VE-VLGWKDLPI--AGDEVLEVESEDRARK 415 (683)
T ss_pred eEEEEeccccccccEEEEechhhhhhhhhhcCCCCccccCCCCc------eE-eecccCCCC--CCceEEEEecHHHHHH
Confidence 99999999999999999999999999999 999999999999 99 999999999 9999999999855531
Q ss_pred --HHHHH---HHHhh-----hhhccccchhHHhhhcccC---------CCCCCCceeeEEEEeCCCccHHHHHHHHhhcC
Q psy4665 425 --TYTSA---LCRLD-----IVHYGVTSTDQWRRYWTCS---------TPTRESKHGRIYLIGDVDGSVEALLDVFDTYT 485 (673)
Q Consensus 425 --~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iikad~~GsleAi~~~l~~~~ 485 (673)
.++.. .++.+ ...++......|..+..+- ......+.+|+|||+|++||+||++++|+.|+
T Consensus 416 ~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~ 495 (683)
T KOG1145|consen 416 VLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLN 495 (683)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcC
Confidence 11111 11100 0111111112222221110 11122367999999999999999999999999
Q ss_pred CCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEE
Q psy4665 486 SALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAE 565 (673)
Q Consensus 486 ~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~ 565 (673)
+++|+++++|+|||+||++|+++|++++|+||||||+.++.++++|.+.||+|+.|||||+|+||+++.|.++|||..+.
T Consensus 496 ~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~LieDv~~~ls~rlp~v~e~ 575 (683)
T KOG1145|consen 496 SEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYRLIEDVRELLSERLPPVEEQ 575 (683)
T ss_pred CCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHHHHHHhccCceEeehhHHHHHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCC
Q psy4665 566 EVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPS 645 (673)
Q Consensus 566 ~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~ 645 (673)
+++|+|.|++.|.++.++|..+||||+|++|++++++.+|++|||++||+|.|.||||.|++|+++++|.||||.|++||
T Consensus 576 ~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~ 655 (683)
T KOG1145|consen 576 EVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGN 655 (683)
T ss_pred eeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhhhhhhcCCCeeeeEeccCC
Confidence 99999999999999976667799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEEEeecccccCCCCCC
Q psy4665 646 IEFEPGDTIVCFVKNKVPQFTDWNPPGF 673 (673)
Q Consensus 646 ~~~~~gD~i~~~~~~~~~~~~~~~~~~~ 673 (673)
.+|++||.|+||++....+..+|+||||
T Consensus 656 ~~f~~GD~i~~ye~k~i~~e~~~~p~~f 683 (683)
T KOG1145|consen 656 EDFKEGDKIQCYEKKRILEETSWVPPGF 683 (683)
T ss_pred cCCCcCCEEEEeehhhhhhhcccCCCCC
Confidence 9999999999999999999999999998
No 2
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-99 Score=801.71 Aligned_cols=498 Identities=41% Similarity=0.628 Sum_probs=455.6
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
..|+|.|++|||++||||||++.++++++...+.+|+|++++++++.++ +...++|+|||||+.|+.|+.|++..+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3589999999999999999999999999999999999999999999986 34789999999999999999999999999
Q ss_pred EEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 190 VVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
++||+|+++|+++||.+.+++++.+++|+++++||+|+++++++....++.++++..+.|+++..++
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~V------------- 148 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFV------------- 148 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEE-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEE
Q psy4665 270 TEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLAT 349 (673)
Q Consensus 270 ~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~ 349 (673)
|+||++|.|+++||+.+..+++..+++..++.++.|.|+++..++++|.+++
T Consensus 149 ----------------------------pvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vat 200 (509)
T COG0532 149 ----------------------------PVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVAT 200 (509)
T ss_pred ----------------------------EeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEE
Confidence 6666777778888888888888889999999999999999999999999999
Q ss_pred EEeeecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHH--
Q psy4665 350 ALVQRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFD-- 424 (673)
Q Consensus 350 ~~V~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~-- 424 (673)
++|++|+|+.||.+++|..+++|+.|+ +++++.+.|+.+ +. +.|++..|. +||.+...+++..+.+
T Consensus 201 viv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~------v~-i~g~~evp~--Ag~~~~v~~~e~~A~~~~ 271 (509)
T COG0532 201 VIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKP------VE-ILGLSEVPA--AGDVFIVVKDEKKARAIA 271 (509)
T ss_pred EEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCC------eE-Eeccccccc--cCceEEecCChHHHhhhh
Confidence 999999999999999999999999998 899999999999 88 999999999 9999999999977642
Q ss_pred HHHHHH--HHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCC
Q psy4665 425 TYTSAL--CRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVS 502 (673)
Q Consensus 425 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it 502 (673)
.++... ...............+... ..+.+.+.+|+|||||++||+|||..+|+++..++++++|++++||+||
T Consensus 272 ~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~it 347 (509)
T COG0532 272 ELRVVLLREAELASKKKGELEELIAEI----KIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGIT 347 (509)
T ss_pred hHhhhhhhhhhhhhHHHHHHHHHHHhh----hccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCC
Confidence 222211 0000000000000111111 2345678899999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcCCeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCC
Q psy4665 503 ATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDG 582 (673)
Q Consensus 503 ~~Dv~lA~~~~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~ 582 (673)
++||.+|++++|+|+||||++++.++++|+..+|+|++|+|||||+||++++++++|+|.+++++.|.|++.++|.++
T Consensus 348 e~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~-- 425 (509)
T COG0532 348 ESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP-- 425 (509)
T ss_pred hhhHHHHHhcCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccceEEEEEEEcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEEEEEee
Q psy4665 583 KKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKV 662 (673)
Q Consensus 583 ~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~~~~~~ 662 (673)
+.|.||||+|++|++++|+++|++|||.+||+|+|.||||+|++|+|+++|+||||.++||+ |+++||+||+|+..+.
T Consensus 426 -k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~~-di~~gD~le~~~~~~~ 503 (509)
T COG0532 426 -KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENYR-DIKEGDILEVFEPVEV 503 (509)
T ss_pred -CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCcc-cCCCCCEEEEEEEEee
Confidence 58899999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccc
Q psy4665 663 PQFTD 667 (673)
Q Consensus 663 ~~~~~ 667 (673)
+|++.
T Consensus 504 ~r~l~ 508 (509)
T COG0532 504 KRTLK 508 (509)
T ss_pred chhhc
Confidence 99875
No 3
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.2e-94 Score=810.74 Aligned_cols=554 Identities=38% Similarity=0.612 Sum_probs=462.5
Q ss_pred hhHHHHHhhhcccccccCCccccccHHHHHHHHHHhCCeeEEEccCCCcccCcCCcccccCCCCCCccccCCCCEEEEEe
Q psy4665 43 DHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMG 122 (673)
Q Consensus 43 ~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG 122 (673)
++.-..+|..+. .++.+. .|+. +++..++.++|.++......+.... . ...+.....+..++|+|+++|
T Consensus 26 ~~~~~~l~~~g~--~~~~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~r~p~V~I~G 94 (587)
T TIGR00487 26 SDIIKKLMLLGV--MVTINQ-VLDK-ETAELVAEEFGVKVEVRVTLEETEA-----E--EQDEDSGDLLVERPPVVTIMG 94 (587)
T ss_pred HHHHHHHHHCCC--EecCCc-CcCH-HHHHHHHHHhCCceEEeccchhhhh-----h--ccccccccccccCCCEEEEEC
Confidence 333344444443 344444 4554 4889999999998876552211110 0 001122335677999999999
Q ss_pred CCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChH
Q psy4665 123 HVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME 202 (673)
Q Consensus 123 ~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~ 202 (673)
|+|||||||+++|++..+...+.+|+|++++...+.+.++..++|||||||++|..++.+++..+|++++|+|+++|..+
T Consensus 95 hvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~ 174 (587)
T TIGR00487 95 HVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMP 174 (587)
T ss_pred CCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCH
Confidence 99999999999999999888888999999998888885455899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHh
Q psy4665 203 QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 203 q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 282 (673)
|+.+++.++...++|+++++||+|+++++.+++.+.+...+.....|++..+++++||++|.|++++++++
T Consensus 175 qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I--------- 245 (587)
T TIGR00487 175 QTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI--------- 245 (587)
T ss_pred hHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh---------
Confidence 99999999999999999999999998888878777777666555556556677766666666666555544
Q ss_pred CCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCE
Q psy4665 283 QGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAI 362 (673)
Q Consensus 283 ~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~ 362 (673)
....+...+..+++.|+.++|++++.+++.|++++++|++|+|++||.
T Consensus 246 --------------------------------~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 246 --------------------------------LLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred --------------------------------hhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 333333445667778999999999999999999999999999999999
Q ss_pred EEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHH--HHHHHHHHhhhhh
Q psy4665 363 VVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFD--TYTSALCRLDIVH 437 (673)
Q Consensus 363 v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~--~~~~~~~~~~~~~ 437 (673)
+++|+.+++||.|+ ++++++|.||++ |. ++||+++|. +||+|+..++++++.+ .++.+..+.....
T Consensus 294 iv~~~~~~kVr~l~~~~g~~v~~a~~g~~------v~-i~Gl~~~p~--aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~ 364 (587)
T TIGR00487 294 VVVGAAYGRVRAMIDENGKSVKEAGPSKP------VE-ILGLSDVPA--AGDEFIVFKDEKDARLVAEKRAGKLRQKALS 364 (587)
T ss_pred EEECCCccEEEEEECCCCCCCCEECCCCE------EE-EeCCCCCCC--CCCEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998 788999999999 99 889999888 9999999988866542 3333321110000
Q ss_pred ccc-c-chhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCCe
Q psy4665 438 YGV-T-STDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAI 515 (673)
Q Consensus 438 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~ 515 (673)
... . ....+.. ..+.+.+.+++|||||++||+|||.++|+++++++++++|++++||+||++||.+|++++|+
T Consensus 365 ~~~~~~~~~~~~~-----~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~ 439 (587)
T TIGR00487 365 RSVKVTLDNLFEQ-----IKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAI 439 (587)
T ss_pred hccccchhHhhhh-----hhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCE
Confidence 000 0 0011110 12345688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEee
Q psy4665 516 IYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSK 595 (673)
Q Consensus 516 I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~ 595 (673)
|+||||+++++++++|++.||+|++|||||||+|+++++|+++++|.++++++|+|+|+++|.++ +.++||||+|++
T Consensus 440 i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~---~~~~iaG~~V~~ 516 (587)
T TIGR00487 440 IIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVFNVP---KIGNIAGCYVTE 516 (587)
T ss_pred EEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEeeeeEEEEEEEecC---CCCEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999987 567999999999
Q ss_pred CeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEEEEEeecccc
Q psy4665 596 GVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQFT 666 (673)
Q Consensus 596 G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~~~~~~~~~~ 666 (673)
|++++|+++||+|+|++||+|+|.||||+|++|+|+++|+||||.|+||+ ||++||+||||+.++++|++
T Consensus 517 G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~-~~~~gD~i~~~~~~~~~~~l 586 (587)
T TIGR00487 517 GVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNYN-DIKEGDIIEAFEVQEVKRTL 586 (587)
T ss_pred CEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEeccc-cCCCCCEEEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999986
No 4
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.7e-95 Score=826.98 Aligned_cols=546 Identities=41% Similarity=0.630 Sum_probs=462.6
Q ss_pred cchhHHHHHhhhcccccccCCccccccHHHHHHHHHHhCCeeEEEccCCCcccCcCCcccccCCCCCCccccCCCCEEEE
Q psy4665 41 KSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTI 120 (673)
Q Consensus 41 ~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i 120 (673)
...+.-..+|..+. .++.+. .|+. +++..++.++|+.+......+ ......+..|+|+|++
T Consensus 235 ~~~~ii~~l~~~g~--~~~~n~-~l~~-~~~~~i~~e~g~~~~~~~~~~---------------~~~~~~~~~R~pvV~I 295 (787)
T PRK05306 235 KAAEVIKKLFKLGV--MATINQ-SLDQ-ETAELLAEEFGHEVKLVSLLE---------------DDDEEDLVPRPPVVTI 295 (787)
T ss_pred CHHHHHHHHHHcCC--eecCCC-ccCH-HHHHHHHHHcCCEEEEccccc---------------cccccccccCCCEEEE
Confidence 33444444454443 344444 4554 588899999999987766322 0111234679999999
Q ss_pred EeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC
Q psy4665 121 MGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV 200 (673)
Q Consensus 121 vG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~ 200 (673)
+||+|||||||+++|+++.+...+.+|+|++++.+.+.+ ++..++|||||||++|..++.+++..+|+++||+|+++|.
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv 374 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV 374 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC
Confidence 999999999999999998888888899999999988888 5789999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 201 MEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 201 ~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.+|+.++|.++...++|+|+++||||+++++.+++...+...+...+.+++.++++++||++|.|+++|++++
T Consensus 375 ~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I------- 447 (787)
T PRK05306 375 MPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI------- 447 (787)
T ss_pred CHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh-------
Confidence 9999999999999999999999999998888777777776665555556556677766666666665555544
Q ss_pred HhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeC
Q psy4665 281 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKG 360 (673)
Q Consensus 281 ~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g 360 (673)
....+..++..++..|+.++|++++.+++.|++++++|++|+|+.|
T Consensus 448 ----------------------------------~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 448 ----------------------------------LLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred ----------------------------------hhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 3333333456677889999999999999999999999999999999
Q ss_pred CEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHH--HHHHHHHHHhhh
Q psy4665 361 AIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVF--DTYTSALCRLDI 435 (673)
Q Consensus 361 ~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~--~~~~~~~~~~~~ 435 (673)
|.|++|+.+++|+.|+ +.++++|.||++ |. ++||+++|. +||+|+..++++++. ..|+.+..+...
T Consensus 494 d~vv~g~~~gkVr~m~~~~~~~v~~A~pGd~------V~-I~gl~~~p~--~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~ 564 (787)
T PRK05306 494 DIVVAGTTYGRVRAMVDDNGKRVKEAGPSTP------VE-ILGLSGVPQ--AGDEFVVVEDEKKAREIAEYRQEKAREKK 564 (787)
T ss_pred CEEEECCcEEEEEEEECCCCCCCCEEcCCCe------EE-EeCCCCCCC--CCCEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 778999999999 99 899999987 999999999986653 245554443321
Q ss_pred hhccc-cc-hhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcC
Q psy4665 436 VHYGV-TS-TDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFN 513 (673)
Q Consensus 436 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~ 513 (673)
+.... .. ...+.. ..+.+.+.+++|||||++||+|||.++|.+|.+++++++|++++||+||++||.+|.+++
T Consensus 565 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~ 639 (787)
T PRK05306 565 LARQQRVSLENLFEQ-----MKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASN 639 (787)
T ss_pred hhhccccCHHHhhhh-----hhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcC
Confidence 11110 00 111111 123345689999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEE
Q psy4665 514 AIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRC 593 (673)
Q Consensus 514 a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V 593 (673)
|+||||||+++++++++|++.||+|++|+|||+|+||++++|+++|+|.++++++|+|+|+++|.++ +.++||||+|
T Consensus 640 a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~---k~~~iaGc~V 716 (787)
T PRK05306 640 AIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVS---KVGTIAGCMV 716 (787)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheeeeeeEEEEEEEecC---CCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 5679999999
Q ss_pred eeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEEEEEeeccc
Q psy4665 594 SKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQF 665 (673)
Q Consensus 594 ~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~~~~~~~~~ 665 (673)
++|++++|+++||+|+|++||+|+|.||||+|++|+||.+|+||||.|+||+ ||++||+||||+.++++|+
T Consensus 717 ~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~-d~~~gD~ie~~~~~~~~~~ 787 (787)
T PRK05306 717 TEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENYN-DIKEGDIIEAYEMVEVKRT 787 (787)
T ss_pred eeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeeccc-cCCCCCEEEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999875
No 5
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=6.9e-94 Score=812.45 Aligned_cols=558 Identities=36% Similarity=0.542 Sum_probs=458.3
Q ss_pred cchhHHHHHhhhcccccccCCccccccHHHHHHHHHHhCCeeEEEccCCCcccCcCCcccccCCCCCCccccCCCCEEEE
Q psy4665 41 KSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTI 120 (673)
Q Consensus 41 ~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i 120 (673)
...+.-..+|..+. .++.+. .|+. +++..++.++|..+......+... ... .....+.....+..++|+|++
T Consensus 178 ~~~~ii~~l~~~g~--~~~~n~-~l~~-~~~~~~~~~~g~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~r~p~V~I 249 (742)
T CHL00189 178 PETEIIKSLFLKGI--SVTVNQ-IIDI-SIISQVADDFGINIISEEKNNINE-KTS---NLDNTSAFTENSINRPPIVTI 249 (742)
T ss_pred CHHHHHHHHHHcCc--CccCCC-ccCH-HHHHHHHHHcCCeEEEeccchhhh-hhh---cccccccchhhhcccCCEEEE
Confidence 33344444444443 344444 4554 488999999999987655322111 000 001111123346789999999
Q ss_pred EeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec---CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC
Q psy4665 121 MGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK---SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 121 vG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~---~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~ 197 (673)
+||+|||||||+++|+...+...+.+|+|+++..+.+.+. .+..++|||||||++|..++.+++..+|+++||+|++
T Consensus 250 vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~ 329 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAAD 329 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECc
Confidence 9999999999999999998888888899998887776653 3578999999999999999999999999999999999
Q ss_pred CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 198 DGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 198 ~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+|..+|+.+++..+...++|+|+++||+|+++.+.+++.+.+...+...+.+++.++++++||++|.|+++|
T Consensus 330 dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL-------- 401 (742)
T CHL00189 330 DGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL-------- 401 (742)
T ss_pred CCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH--------
Confidence 999999999999999999999999999999877777776666655444444444556665555555555554
Q ss_pred HHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEE
Q psy4665 278 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTL 357 (673)
Q Consensus 278 ~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~L 357 (673)
++.|..+.+...+..++..|+.++|+++..+++.|++++++|.+|+|
T Consensus 402 ---------------------------------le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtL 448 (742)
T CHL00189 402 ---------------------------------LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTL 448 (742)
T ss_pred ---------------------------------HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEE
Confidence 44444444344556677789999999999999999999999999999
Q ss_pred eeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhh
Q psy4665 358 KKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLD 434 (673)
Q Consensus 358 k~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~ 434 (673)
+.||.+++|+.+++|+.|+ +.++.+|.||++ |. +.||+..|. +||+|...++++++.+..........
T Consensus 449 r~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgdi------V~-I~gl~~~~~--~Gd~l~v~~~e~~a~~~~~~~~~~~~ 519 (742)
T CHL00189 449 HIGDIIVIGTSYAKIRGMINSLGNKINLATPSSV------VE-IWGLSSVPA--TGEHFQVFNSEKEAKLKIIKNKENNK 519 (742)
T ss_pred ecCCEEEECCcceEEEEEEcCCCcCccEEcCCCc------eE-ecCcccCCC--CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 789999999999 98 899987777 89999999998776533222211110
Q ss_pred hhhccccc-hhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcC
Q psy4665 435 IVHYGVTS-TDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFN 513 (673)
Q Consensus 435 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~ 513 (673)
....+..+ ...+.. ..+...+.+|+|||||++||+|||.++|.++++++|+++|++++||+||++||.+|++++
T Consensus 520 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~ 594 (742)
T CHL00189 520 KDTTKRITLSTTKTI-----NKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTN 594 (742)
T ss_pred HhhhcccchHHHHHH-----hhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcC
Confidence 00000000 011111 234567899999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEE
Q psy4665 514 AIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRC 593 (673)
Q Consensus 514 a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V 593 (673)
|+||||||+++++++++|++.||+|++|+|||+|+|+++++|+++++|.++++++|+|+|+++|.++ + ++||||+|
T Consensus 595 a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~---k-~~iaGc~V 670 (742)
T CHL00189 595 AEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFPLA---K-RFVAGCRV 670 (742)
T ss_pred CEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeEEeeEEEecC---C-CEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 2 68999999
Q ss_pred eeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEEEEEeecccc
Q psy4665 594 SKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQFT 666 (673)
Q Consensus 594 ~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~~~~~~~~~~ 666 (673)
++|.+++|+++||+|+|++||+|+|.||||+|++|+||++|+||||.|+||+ ||++||+||||+.++++|++
T Consensus 671 ~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-d~~~gD~ie~y~~~~~~~~l 742 (742)
T CHL00189 671 TEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-LWQSGDKIHAFELIPKKKSL 742 (742)
T ss_pred ecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC-CCCcCCEEEEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999875
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.3e-80 Score=699.11 Aligned_cols=496 Identities=29% Similarity=0.437 Sum_probs=411.8
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-----Ce------------EEEEEeCCCCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-----GE------------QVTFLDTPGHA 174 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-----~~------------~i~liDTpG~~ 174 (673)
..|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.+.. +. .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46899999999999999999999998887777778899888766544321 10 27899999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC-CcHHHHHHHHHHcCccccccCCce
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA-ADIERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~-~~~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
+|..++.++++.+|++++|+|+++|...++.+++..+...++|+++++||+|+.. +. ... +.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~--------~~~---------~~ 145 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWK--------STE---------DA 145 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhh--------hhc---------Cc
Confidence 9999999999999999999999999999999999999999999999999999852 11 000 24
Q ss_pred eEEEeeccCCCChhhHHHHHH-HHHHHHHhCCCCcc------cccCCceeeeeccccCCCcchhHHHHHHHHH--h-hhc
Q psy4665 254 QAVPISALTGTNVDNLTEAIE-RTKNMLLAQGITVE------DLGGDIQAVPISALTGTNVDNLTEAIVAQAE--I-MHL 323 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~-~~~~~~~~~~~~~e------e~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~--~-~~~ 323 (673)
++...|+.++.++.+.++... +....+...|+..+ +....++++++||++|.|+.+|++.+....+ + ..+
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l 225 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERL 225 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 566777777777766665544 44455556676655 4456788999999999999999999876543 2 245
Q ss_pred ccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcce----EEEEec-cc-------------ccceecc
Q psy4665 324 KADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWA----KVRSIS-RK-------------TLINTAL 385 (673)
Q Consensus 324 ~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~----kvr~i~-~~-------------~v~~a~~ 385 (673)
..+++.|+++.|++++.+++.|++++++|.+|+|++||.+++++.++ +||+|. .. +++++.|
T Consensus 226 ~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~ 305 (586)
T PRK04004 226 KIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVA 305 (586)
T ss_pred ccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCC
Confidence 66788899999999999999999999999999999999999988764 999987 43 3455566
Q ss_pred CccccccCcEEE-eeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeE
Q psy4665 386 GTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRI 464 (673)
Q Consensus 386 G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (673)
+.+ |.+ +.||+.. . +||.|...+++ ++. .++.+.... +... ....+.+|+
T Consensus 306 ~~~------v~i~~~gl~~~-~--~g~~~~v~~~~-~~~-~~~~~~~~~------------~~~~------~~~~~~~~v 356 (586)
T PRK04004 306 AAG------VKISAPDLEDA-L--AGSPLRVVRDE-DVE-EVKEEVEEE------------IEEI------RIETDEEGV 356 (586)
T ss_pred CCc------eEEEeCCcccc-C--CCCeEEEeCcH-HHH-HHHHHHHHH------------HHhc------cccccccCE
Confidence 666 663 2588765 4 89999999873 332 333332211 0000 123568999
Q ss_pred EEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhc------CCeEEEEcCCCCHhHHhHHHHcCCeE
Q psy4665 465 YLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLF------NAIIYTFNTTLHPAAKTSAEELGVTV 538 (673)
Q Consensus 465 iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~------~a~I~~Fnv~~~~~~~~~a~~~~V~i 538 (673)
|||||++||+|||.++|+++ +++|++++||+||++||.+|+++ +|+||||||+++++++++|++.||+|
T Consensus 357 ivkad~~Gs~EAi~~~l~~~-----~i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I 431 (586)
T PRK04004 357 VVKADTLGSLEALVNELREE-----GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKI 431 (586)
T ss_pred EEEeCCccHHHHHHHHHHhC-----CCCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeE
Confidence 99999999999999999985 69999999999999999999999 99999999999999999999999999
Q ss_pred EEechhhHHHHHHHHHHhccCCceeE---EEEeEEEEEe----eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEee-CC
Q psy4665 539 KQFNVIYKLVEDVKEEINAMLPHTYA---EEVLGEANVL----QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVR-RN 610 (673)
Q Consensus 539 ~~~~iIY~l~~~~~~~~~~~~~~~~~---~~~~g~a~v~----~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r-~~ 610 (673)
++|+|||||+|+++++|+++++|.++ ++++|.|+|+ ++|..+ ++.||||+|++|++++|++ |+| +|
T Consensus 432 ~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~vf~~~----~~~IaGc~V~~G~i~~~~~--v~r~~g 505 (586)
T PRK04004 432 FTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYVFRQS----DPAIVGVEVLGGTIKPGVP--LIKEDG 505 (586)
T ss_pred EEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEccceeEecC----CCeEEEEEEEeCEEecCCE--EEEECC
Confidence 99999999999999999999987754 6889999988 677654 4799999999999999985 789 99
Q ss_pred EEEEEEeeecccccccccccccccceeEEEEcCC---CCCCCCCCEEEEEEEEeeccccc
Q psy4665 611 EVLFEGKLESMKHLKEEVTSIKKELECGLRLEDP---SIEFEPGDTIVCFVKNKVPQFTD 667 (673)
Q Consensus 611 ~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~---~~~~~~gD~i~~~~~~~~~~~~~ 667 (673)
+.+ |+|.||||+|++|+||++|+||||.|++| + ||++||+|+||...+..+.++
T Consensus 506 ~~i--G~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~-~~~~gD~i~~~~~~~~~~~l~ 562 (586)
T PRK04004 506 KRV--GTIKQIQDQGENVKEAKAGMEVAISIDGPTVGR-QIKEGDILYVDIPEEHAKILE 562 (586)
T ss_pred EEE--EEEehhhccCCcccEeCCCCEEEEEEecccccC-CCCCCCEEEEEEEehhHHHHH
Confidence 765 99999999999999999999999999999 7 999999999999999888775
No 7
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=1.1e-78 Score=679.87 Aligned_cols=487 Identities=28% Similarity=0.420 Sum_probs=399.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-----------------eEEEEEeCCCCCc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-----------------EQVTFLDTPGHAA 175 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-----------------~~i~liDTpG~~~ 175 (673)
.|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.+... ..++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 47899999999999999999999999887777788999877766654211 1388999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeE
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|..++.++++.+|++++|+|+++|..+++.+.+..+...++|+++++||+|+... +... ...++
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-------~~~~---------~~~~f 145 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-------WRSH---------EGRPF 145 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-------hhhc---------cCchH
Confidence 9999999999999999999999999999999999999899999999999999631 0001 13467
Q ss_pred EEeeccCCCChhhHH-HHHHHHHHHHHhCCCCcc------cccCCceeeeeccccCCCcchhHHHHHHHHHh---hhccc
Q psy4665 256 VPISALTGTNVDNLT-EAIERTKNMLLAQGITVE------DLGGDIQAVPISALTGTNVDNLTEAIVAQAEI---MHLKA 325 (673)
Q Consensus 256 v~iSA~~g~gv~~l~-~~i~~~~~~~~~~~~~~e------e~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~---~~~~~ 325 (673)
+++|++.+.++..-+ +.+.....++.+.|+..+ +....++++|+||++|.|+++|++.|..+.+. ..++.
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~ 225 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKL 225 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhcc
Confidence 788888887664332 333444455666676655 45667899999999999999999998876542 35667
Q ss_pred CCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc----eEEEEec-ccccc-------------eeccCc
Q psy4665 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW----AKVRSIS-RKTLI-------------NTALGT 387 (673)
Q Consensus 326 ~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~----~kvr~i~-~~~v~-------------~a~~G~ 387 (673)
+++.|+++.|++++.+++.|++++++|.+|+|++||++++|+.+ ++||.|+ ..+++ ++.|+.
T Consensus 226 ~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~ 305 (590)
T TIGR00491 226 EEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAA 305 (590)
T ss_pred CCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCC
Confidence 78899999999999999999999999999999999999998876 6999988 44443 333333
Q ss_pred cccccCcEE-EeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEE
Q psy4665 388 VQRTSGTVK-ISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYL 466 (673)
Q Consensus 388 ~~~~~g~v~-~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 466 (673)
. +. .+.||+. +. +|+.+...+++. .. ..+.+..+. . ++ ...+.+.+++||
T Consensus 306 ~------~~v~~~~l~~-~~--aG~~~~~~~~e~-~~-~~~~~~~~~-------~-----~~------~~~~~~~~~viv 356 (590)
T TIGR00491 306 G------VKIAAPGLDD-VM--AGSPIRVVTDEE-IE-KVKEEILKE-------V-----EE------IKIDTDEEGVVV 356 (590)
T ss_pred c------eeEEecCCCC-CC--CCCEEEEcCcHH-HH-HHHHHHHHH-------h-----hh------cccccccccEEE
Confidence 3 32 1567775 34 899997776542 21 222222110 0 00 012346799999
Q ss_pred EeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcC------CeEEEEcCCCCHhHHhHHHHcCCeEEE
Q psy4665 467 IGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFN------AIIYTFNTTLHPAAKTSAEELGVTVKQ 540 (673)
Q Consensus 467 kad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~------a~I~~Fnv~~~~~~~~~a~~~~V~i~~ 540 (673)
|||++||+|||.++|.++. ++|++++||+||++||.+|++++ |+|+||||+++++++++|+++||+|++
T Consensus 357 kad~~Gs~EAl~~~l~~~~-----i~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~ 431 (590)
T TIGR00491 357 KADTLGSLEALVNELRDMG-----VPIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFS 431 (590)
T ss_pred EecCcchHHHHHHHHHhCC-----CcEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEE
Confidence 9999999999999999964 89999999999999999999985 999999999999999999999999999
Q ss_pred echhhHHHHHHHHHHhccCCceeE---EEEeEEEEEe----eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEee-CCEE
Q psy4665 541 FNVIYKLVEDVKEEINAMLPHTYA---EEVLGEANVL----QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVR-RNEV 612 (673)
Q Consensus 541 ~~iIY~l~~~~~~~~~~~~~~~~~---~~~~g~a~v~----~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r-~~~~ 612 (673)
|+|||||+|+++++|+++++|.++ ++++|.|+|+ ++|..+ ++.||||+|++|++++|++ |+| +|++
T Consensus 432 ~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf~~~----~~~i~G~~V~~G~i~~~~~--v~r~~~~~ 505 (590)
T TIGR00491 432 DNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVFRQS----KPAIVGVEVLTGVIRQGYP--LMKDDGET 505 (590)
T ss_pred eCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheeeeCC----CCeEEEEEEecCEEecCCe--EEecCCEE
Confidence 999999999999999999999766 7889999999 777654 4799999999999999975 677 5666
Q ss_pred EEEEeeecccccccccccccccceeEEEEcCC---CCCCCCCCEEEEEE
Q psy4665 613 LFEGKLESMKHLKEEVTSIKKELECGLRLEDP---SIEFEPGDTIVCFV 658 (673)
Q Consensus 613 i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~---~~~~~~gD~i~~~~ 658 (673)
+ |+|.||||+|++|+||++|+||||.|++| + +|++||+|++.-
T Consensus 506 i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~-~~~~gD~l~~~i 551 (590)
T TIGR00491 506 V--GTVRSMQDKGENVKSASAGQEVAIAIKDVVYGR-TIHEGDTLYVDV 551 (590)
T ss_pred E--EEEchhcccCccccEECCCCEEEEEEeCccccC-CCCCCCEEEEeC
Confidence 5 99999999999999999999999999999 5 999999999864
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=1e-70 Score=640.07 Aligned_cols=480 Identities=29% Similarity=0.395 Sum_probs=390.1
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe-----------------EEEEEeCCCCCcchhhh
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-----------------QVTFLDTPGHAAFSNMR 180 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~-----------------~i~liDTpG~~~f~~~~ 180 (673)
-++++| ||||+++|+++++...+.+|+||+++++.+.++... .++|||||||++|..++
T Consensus 468 ~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr 543 (1049)
T PRK14845 468 NGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR 543 (1049)
T ss_pred eeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH
Confidence 345555 999999999999999999999999999998875322 28999999999999999
Q ss_pred hhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC-CCcHH---HHHHHHHHcCccccccCCceeEE
Q psy4665 181 SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP-AADIE---RTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 181 ~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~-~~~~~---~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
.+++..+|++++|+|+++|...|+.+++..+...++|+++++||+|+. +++.. .+...+....
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~------------- 610 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD------------- 610 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhH-------------
Confidence 989999999999999999999999999999999999999999999995 33211 1111110000
Q ss_pred EeeccCCCChhhHHHHHHHHHHHHHhCCCCc------ccccCCceeeeeccccCCCcchhHHHHHHHHHh---hhcccCC
Q psy4665 257 PISALTGTNVDNLTEAIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNVDNLTEAIVAQAEI---MHLKADY 327 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~------ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~---~~~~~~~ 327 (673)
..-..++-+.+.+...++.+.|+.. ++..+.++++|+||++|.|+++|++.|..+++. ..++.++
T Consensus 611 ------~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~ 684 (1049)
T PRK14845 611 ------QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNV 684 (1049)
T ss_pred ------HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCC
Confidence 0001222222333333344445443 355678889999999999999999998877653 2466677
Q ss_pred CCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc----ceEEEEec-cc-------------ccceeccCccc
Q psy4665 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----WAKVRSIS-RK-------------TLINTALGTVQ 389 (673)
Q Consensus 328 ~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~----~~kvr~i~-~~-------------~v~~a~~G~~~ 389 (673)
+.|+.++|++++.+++.|++++++|.+|+|++||.+++|+. +++||.|. .. +++++.|+..
T Consensus 685 ~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~- 763 (1049)
T PRK14845 685 EGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAG- 763 (1049)
T ss_pred CCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCc-
Confidence 89999999999999999999999999999999999999886 79999987 32 4567777777
Q ss_pred cccCcEEE-eeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEe
Q psy4665 390 RTSGTVKI-SLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIG 468 (673)
Q Consensus 390 ~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iika 468 (673)
|.+ ..||+.. .+||.+..++++.++. .+++++.+. . .. ...+...+|+||||
T Consensus 764 -----vki~a~gl~~~---~aG~~~~v~~~e~~~~-~~~~~~~~~-------~-----~~------~~~~~~~~~vivKa 816 (1049)
T PRK14845 764 -----VKIAAPGLEEV---LAGSPIRIVPTKEKIE-KAKEEVMKE-------V-----EE------AKIETDKEGILIKA 816 (1049)
T ss_pred -----eEEecCCcccc---CCCCeEEEeCCHHHHH-HHHHHHHHH-------H-----hh------hccCcceeeEEEEe
Confidence 773 2588764 3899999999987765 344333211 0 00 01235679999999
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhh------cCCeEEEEcCCCCHhHHhHHHHcCCeEEEec
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATL------FNAIIYTFNTTLHPAAKTSAEELGVTVKQFN 542 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~------~~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~ 542 (673)
|++||+|||.++|+++ +++|++++||+||++||.+|++ ++|+|+||||+++++++++|++.||+|++|+
T Consensus 817 Dt~GSlEAl~~~L~~~-----~i~i~~~~vG~it~~DV~~A~~~~~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~ 891 (1049)
T PRK14845 817 DTLGSLEALANELRKA-----GIPIKKAEVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDN 891 (1049)
T ss_pred cccchHHHHHHHHHhC-----CCCEEEeeCCCCCHHHHHHHHhhhccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeC
Confidence 9999999999999985 5899999999999999999998 5899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhccCCceeE---EEEeEEEEEe----eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEee-CCEEEE
Q psy4665 543 VIYKLVEDVKEEINAMLPHTYA---EEVLGEANVL----QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVR-RNEVLF 614 (673)
Q Consensus 543 iIY~l~~~~~~~~~~~~~~~~~---~~~~g~a~v~----~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r-~~~~i~ 614 (673)
|||||+|+++++|+++++|..+ +.++|.|+|+ ++|..+ +|.||||+|++|++++|+ +|+| +|+++
T Consensus 892 IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~----~~~IaG~~V~~G~i~~~~--~l~r~~~~~i- 964 (1049)
T PRK14845 892 IIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRS----NPAIVGVEVLEGTLRVGV--TLIKEDGMKV- 964 (1049)
T ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCC----CCeEEEEEEeeCEEecCc--EEEecCCEEE-
Confidence 9999999999999999998754 4578999888 777654 479999999999999996 5678 56655
Q ss_pred EEeeecccccccccccccccceeEEEEcCCCC--CCCCCCEEEEEEEEe
Q psy4665 615 EGKLESMKHLKEEVTSIKKELECGLRLEDPSI--EFEPGDTIVCFVKNK 661 (673)
Q Consensus 615 ~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~--~~~~gD~i~~~~~~~ 661 (673)
|+|.||||+|++|+||++|+||||.|+++.. +|++||+++++-..+
T Consensus 965 -G~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~i~~~ 1012 (1049)
T PRK14845 965 -GTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVDVPES 1012 (1049)
T ss_pred -EEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEecCHH
Confidence 9999999999999999999999999999865 999999999986554
No 9
>KOG1144|consensus
Probab=100.00 E-value=6.9e-60 Score=506.00 Aligned_cols=503 Identities=27% Similarity=0.387 Sum_probs=400.1
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-----------CC------eEEEEEeCCCC
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-----------SG------EQVTFLDTPGH 173 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-----------~~------~~i~liDTpG~ 173 (673)
..-|.|.|||+||+++|||-|++.++++++..++.+|+|+.+++..+... ++ --+.+||||||
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 35678999999999999999999999999999999999999998877652 11 13789999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC-C--c-HHHHHHHHHHcCcccccc
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA-A--D-IERTKNMLLAQGITVEDL 249 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~-~--~-~~~~~~~l~~~~~~~~~~ 249 (673)
+.|.+++.++...||++|||+|..+|+.+||++.++.++..+.|+||++||+|+.. + . ...+...+....
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~------ 624 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK------ 624 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh------
Confidence 99999999999999999999999999999999999999999999999999999831 1 1 111222222211
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCccc------ccCCceeeeeccccCCCcchhHHHHHHHHHh-hh
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVED------LGGDIQAVPISALTGTNVDNLTEAIVAQAEI-MH 322 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee------~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~-~~ 322 (673)
..-.+++...+......+.++|++.+- ....+.++|.||.+|.|+.+|+-.|+.+++. +.
T Consensus 625 -------------k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 625 -------------KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 111356667777778888888887653 4456678899999999999999999998763 22
Q ss_pred cccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEE-EeCC---cceEEEEec-ccccceeccCccccccCcEEE
Q psy4665 323 LKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV-VAGQ---AWAKVRSIS-RKTLINTALGTVQRTSGTVKI 397 (673)
Q Consensus 323 ~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v-~~g~---~~~kvr~i~-~~~v~~a~~G~~~~~~g~v~~ 397 (673)
-+-.+...+.+.|+++...+|.|+...+++.+|.|+.||.| +||. ..++||.+. ..|+.+.+.-.-+....+|.+
T Consensus 692 ~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvka 771 (1064)
T KOG1144|consen 692 EKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKA 771 (1064)
T ss_pred HHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhh
Confidence 23345677899999999999999999999999999999987 5654 456777766 778777765433344344443
Q ss_pred eeeCC----CCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCcc
Q psy4665 398 SLGFK----INPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGS 473 (673)
Q Consensus 398 i~gl~----~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~Gs 473 (673)
..|++ ++..+.+|..|..+..+.+.-..-...+..+. ..+.+ .+....+++|.|.+.||
T Consensus 772 A~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~---------~~l~~--------Id~sgeGv~vqastlgs 834 (1064)
T KOG1144|consen 772 AQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLE---------SVLSR--------IDKSGEGVYVQASTLGS 834 (1064)
T ss_pred hccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHH---------HHHHH--------hhccCCceEEEecccch
Confidence 44444 35556689998877544333211111112111 11111 23446789999999999
Q ss_pred HHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhc------CCeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHH
Q psy4665 474 VEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLF------NAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKL 547 (673)
Q Consensus 474 leAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~------~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l 547 (673)
||||+++|.+ ++|+|...++|||...||+.|.+. +|+||||+|++..+++++|.++||+|++.+|||||
T Consensus 835 lealleflk~-----~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhL 909 (1064)
T KOG1144|consen 835 LEALLEFLKT-----VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHL 909 (1064)
T ss_pred HHHHHHHHhh-----cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHH
Confidence 9999999998 899999999999999999999876 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeEE-----EEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc
Q psy4665 548 VEDVKEEINAMLPHTYAE-----EVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK 622 (673)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~-----~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~ 622 (673)
||.+..+.+..++...++ ..++...+++-+.|+ ++.|.|.|+.|..|+++.|+++||.. .+.+..|+|.||+
T Consensus 910 fD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~ifN--~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie 986 (1064)
T KOG1144|consen 910 FDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCIFN--KRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIE 986 (1064)
T ss_pred HHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhhcc--CCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeec
Confidence 999999998877643332 244666777744444 67899999999999999999999887 6788899999999
Q ss_pred ccccccccccccceeEEEEcCCCC--------CCCCCCEEEEE
Q psy4665 623 HLKEEVTSIKKELECGLRLEDPSI--------EFEPGDTIVCF 657 (673)
Q Consensus 623 ~~k~~v~~~~~g~ecgi~~~~~~~--------~~~~gD~i~~~ 657 (673)
+++++|.++++|++++|.|++.+. +|-..|++++.
T Consensus 987 ~Nh~~vd~akkGqeVaiKie~~~~e~~~mfGRHf~~~D~LyS~ 1029 (1064)
T KOG1144|consen 987 NNHKPVDYAKKGQEVAIKIEASNGEEQKMFGRHFDMEDILYSH 1029 (1064)
T ss_pred ccCcccchhhcCCeEEEEEecCCCCCcchhhcccCccchHHHH
Confidence 999999999999999999999653 89999988764
No 10
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.4e-32 Score=310.20 Aligned_cols=308 Identities=26% Similarity=0.309 Sum_probs=231.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc--cc--------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS--VV--------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~--~~--------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
.+||+|+||+|||||||+++|+... +. ....+|+|.......+.| ++.+++|||||||.+|..
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGG 79 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHH
Confidence 3799999999999999999998631 11 123578999888888888 689999999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccc--cccCCceeEE
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV--EDLGGDIQAV 256 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~~v 256 (673)
.+.++++.+|+++||+|+.+|...|+..+|..+...++|+|+|+||+|+++++.+++...+......+ ..-...++++
T Consensus 80 ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 99999999999999999999999999999999999999999999999998776665554443321100 0001135677
Q ss_pred EeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEE
Q psy4665 257 PISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIV 336 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~ 336 (673)
++||++|.+..++ ...+.|+..|++.|....+ .+..++++|+.++|+
T Consensus 160 ~~SA~~g~~~~~~-------------------------------~~~~~gi~~Lld~Iv~~lP--~P~~~~~~pl~~~V~ 206 (594)
T TIGR01394 160 YASGRAGWASLDL-------------------------------DDPSDNMAPLFDAIVRHVP--APKGDLDEPLQMLVT 206 (594)
T ss_pred echhhcCcccccC-------------------------------cccccCHHHHHHHHHHhCC--CCCCCCCCCEEEEEE
Confidence 7777777654321 1134578889998887643 334456889999999
Q ss_pred EEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec------ccccceeccCccccccCcEEEeeeCCCCC
Q psy4665 337 ESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINP 405 (673)
Q Consensus 337 e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~ 405 (673)
+++.+++.|++++++|++|+|++||.|++.+. ..+|+.++ +.++++|.|||+ |+ +.|++++.
T Consensus 207 ~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDi------v~-i~gl~~i~ 279 (594)
T TIGR01394 207 NLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDI------VA-VAGLEDIN 279 (594)
T ss_pred EEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCE------EE-EeCCcccC
Confidence 99999999999999999999999999987654 24677765 568999999999 88 78887654
Q ss_pred CCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCC---ccHH------H
Q psy4665 406 FCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVD---GSVE------A 476 (673)
Q Consensus 406 ~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~---Gsle------A 476 (673)
.|||++..+++ ... . ......+.+.+.+.+... |.-+ .
T Consensus 280 ---~Gdtl~~~~~~-~~l-------~----------------------~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~ 326 (594)
T TIGR01394 280 ---IGETIADPEVP-EAL-------P----------------------TITVDEPTLSMTFSVNDSPLAGKEGKKVTSRH 326 (594)
T ss_pred ---CCCEEeCCCcc-ccC-------C----------------------CCCCCCCeEEEEEEecCCCcccccchhhhHHH
Confidence 69999986652 111 0 011234667777776543 4333 3
Q ss_pred HHHHHhhcCCCceEeeEEee
Q psy4665 477 LLDVFDTYTSALCRLDIVHY 496 (673)
Q Consensus 477 i~~~l~~~~~~~~~i~iv~~ 496 (673)
|.+.|.++..+++.+.+-..
T Consensus 327 l~~~L~k~~~~d~sl~v~~~ 346 (594)
T TIGR01394 327 IRDRLMRELETNVALRVEDT 346 (594)
T ss_pred HHHHHHHhhccCCeEEEEEe
Confidence 78888887666677776443
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=9.4e-33 Score=319.72 Aligned_cols=336 Identities=22% Similarity=0.226 Sum_probs=247.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc------------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV------------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~------------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|+|||||+++|+.... .....+|+|++.....+.| .+.+++|+|||||.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcH
Confidence 4678999999999999999999974210 1113578999998888888 68899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCcee
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|...+.++++.+|++++|+|+..|+..|+..++.++...++|+|+++||||+.+++.....+.+++.... .....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~----~~~~~ 162 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA----NPVPI 162 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC----CeeeE
Confidence 99998889999999999999999999999999999999999999999999999988877776666543111 01234
Q ss_pred EEEeeccCCC-C-------------------------------------hhhHHHHHHHHH----HHHHhC-CCCccccc
Q psy4665 255 AVPISALTGT-N-------------------------------------VDNLTEAIERTK----NMLLAQ-GITVEDLG 291 (673)
Q Consensus 255 ~v~iSA~~g~-g-------------------------------------v~~l~~~i~~~~----~~~~~~-~~~~ee~~ 291 (673)
.+|+||..+. | ..+|++.+.+.. +.++++ .++.+++.
T Consensus 163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~ 242 (693)
T PRK00007 163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242 (693)
T ss_pred EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence 5566665541 0 122333333332 233332 24444432
Q ss_pred ----------CCceeeeeccccCCCcchhHHHHHHHHHhhh------------------cccCCCCCeEEEEEEEEeecC
Q psy4665 292 ----------GDIQAVPISALTGTNVDNLTEAIVAQAEIMH------------------LKADYGGPVEAMIVESKFDTH 343 (673)
Q Consensus 292 ----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~------------------~~~~~~~~~~~~V~e~~~~~~ 343 (673)
..+|++++||.++.|+..||++|..+.+.+. ..+++++|+.++||++..+++
T Consensus 243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 322 (693)
T PRK00007 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPF 322 (693)
T ss_pred HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCC
Confidence 3457889999999999999999999865332 112457899999999999999
Q ss_pred CcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEee
Q psy4665 344 RGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGS 415 (673)
Q Consensus 344 ~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~ 415 (673)
.|+++++||++|+|++||.|++.... .++..++ ..+++++.||++ ++ +.|+++.. .||||+.
T Consensus 323 ~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~GdtL~~ 392 (693)
T PRK00007 323 VGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI------AA-AVGLKDTT---TGDTLCD 392 (693)
T ss_pred CCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE------EE-EeCCccCC---cCCEeeC
Confidence 99999999999999999999865433 3444443 568999999999 88 88988754 6999986
Q ss_pred cCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeE
Q psy4665 416 VEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDI 493 (673)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~i 493 (673)
.+.... + . ......+.+.+.|.+...+....|.++|.++..+...+.|
T Consensus 393 ~~~~~~----l----~----------------------~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v 440 (693)
T PRK00007 393 EKNPII----L----E----------------------SMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRV 440 (693)
T ss_pred CCCccc----c----C----------------------CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEE
Confidence 542100 0 0 0011245777778777777778888888777664444433
No 12
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.1e-32 Score=303.61 Aligned_cols=374 Identities=19% Similarity=0.166 Sum_probs=255.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc----------------c------cccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV----------------V------KSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~----------------~------~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.+.++|+|+||+|+|||||+++|+...- . ....+|+|.......+.+ ++.++++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 4678999999999999999999964110 0 112357777777777777 6889999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc---
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV--- 246 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~--- 246 (673)
|||.+|.....++++.+|++++|+|+++++..++..+++.+...++|+++++||+|+.+++..++.+.+++. +...
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 999999998888999999999999999999999999999999999999999999999988877666666543 2110
Q ss_pred -------cccCCceeEEEeecc-----CCCC---hhhHHHHHHHHHHHHHhCC------------------CCccc--cc
Q psy4665 247 -------EDLGGDIQAVPISAL-----TGTN---VDNLTEAIERTKNMLLAQG------------------ITVED--LG 291 (673)
Q Consensus 247 -------~~~~~~~~~v~iSA~-----~g~g---v~~l~~~i~~~~~~~~~~~------------------~~~ee--~~ 291 (673)
..|.+-++.+..-+. .+.. .+.+.+.-...++.+++++ ...+. ..
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 011111111111110 0100 0001110011122222211 00111 12
Q ss_pred CCceeeeeccccCCCcchhHHHHHHHHHhhhccc-------CCCCCeEEEEEEEEe---ecCCcEEEEEEeeecEEeeCC
Q psy4665 292 GDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKA-------DYGGPVEAMIVESKF---DTHRGKLATALVQRGTLKKGA 361 (673)
Q Consensus 292 ~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~-------~~~~~~~~~V~e~~~---~~~~G~v~~~~V~~G~Lk~g~ 361 (673)
...|+|++||.+|.|+..||++|..+.+.+.... ..+.++.|+||++.. ++++|+++++||+||++++|+
T Consensus 247 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~ 326 (526)
T PRK00741 247 ELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGM 326 (526)
T ss_pred CeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCC
Confidence 3458999999999999999999999976442111 124579999999984 568999999999999999999
Q ss_pred EEEeCCcceEEEE--ec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHh
Q psy4665 362 IVVAGQAWAKVRS--IS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRL 433 (673)
Q Consensus 362 ~v~~g~~~~kvr~--i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~ 433 (673)
.|++..+..++|. ++ ..++++|.|||+ ++ +.+++++. .||||+..+. . .|.
T Consensus 327 ~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI------v~-v~~l~~~~---~GDTL~~~~~---~--~~~------ 385 (526)
T PRK00741 327 KVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDI------IG-LHNHGTIQ---IGDTFTQGEK---L--KFT------ 385 (526)
T ss_pred EEEeccCCceEEecceEEEecCCceECceeCCCCE------EE-EECCCCCc---cCCCccCCCc---c--ccC------
Confidence 9998776655553 32 568999999999 88 88988765 5999986431 1 110
Q ss_pred hhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcC
Q psy4665 434 DIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFN 513 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~ 513 (673)
......+.+..-|.+...+-.+.+..+|.++..+. .+++-...- ++
T Consensus 386 --------------------~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~~-------------t~ 431 (526)
T PRK00741 386 --------------------GIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPLD-------------NN 431 (526)
T ss_pred --------------------CCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECCC-------------CC
Confidence 01123478889999999999999999999998755 366554331 34
Q ss_pred CeEEEEcCCCCHhH--HhHHHHcCCeEEEec
Q psy4665 514 AIIYTFNTTLHPAA--KTSAEELGVTVKQFN 542 (673)
Q Consensus 514 a~I~~Fnv~~~~~~--~~~a~~~~V~i~~~~ 542 (673)
..|+++-=.+.-++ ..+..+.||.+....
T Consensus 432 e~il~g~G~lhleV~~~RL~~ey~v~v~~~~ 462 (526)
T PRK00741 432 DLILGAVGQLQFEVVAHRLKNEYNVEAIYEP 462 (526)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHhCCEEEEec
Confidence 55665543333332 244445566665543
No 13
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=7e-32 Score=312.92 Aligned_cols=345 Identities=23% Similarity=0.242 Sum_probs=251.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc------------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV------------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~------------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|+|||||+++|+.... .....+|+|++.....+.+ ++.+++|||||||.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCc
Confidence 4678999999999999999999974211 0112478999998888888 68899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCcee
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|...+.++++.+|++++|+|+.+|...++..+++.+...++|+++++||+|+.+++..+..+.+...... .....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~----~~~~~ 162 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA----NAVPI 162 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC----CceeE
Confidence 99988888999999999999999999999999999999999999999999999988877776666553110 11123
Q ss_pred EEEeeccCCCC-------------------------------------hhhHHHHHHHHHH----HHHhC-CCCccccc-
Q psy4665 255 AVPISALTGTN-------------------------------------VDNLTEAIERTKN----MLLAQ-GITVEDLG- 291 (673)
Q Consensus 255 ~v~iSA~~g~g-------------------------------------v~~l~~~i~~~~~----~~~~~-~~~~ee~~- 291 (673)
.+|+|+..+.. .++|.+.+.+..+ .++++ .++.+++.
T Consensus 163 ~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~ 242 (689)
T TIGR00484 163 QLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKN 242 (689)
T ss_pred EeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHH
Confidence 45555554420 0123333333333 33332 24555532
Q ss_pred ---------CCceeeeeccccCCCcchhHHHHHHHHHhhh-----------------cccCCCCCeEEEEEEEEeecCCc
Q psy4665 292 ---------GDIQAVPISALTGTNVDNLTEAIVAQAEIMH-----------------LKADYGGPVEAMIVESKFDTHRG 345 (673)
Q Consensus 292 ---------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~-----------------~~~~~~~~~~~~V~e~~~~~~~G 345 (673)
..+|++++||.+|.|+..||++|..+.+.+. ..+++++|+.++||++..+++.|
T Consensus 243 ~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 322 (689)
T TIGR00484 243 AIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVG 322 (689)
T ss_pred HHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCC
Confidence 3457889999999999999999999865331 12245788999999999999999
Q ss_pred EEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecC
Q psy4665 346 KLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 346 ~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~ 417 (673)
+++++||++|+|+.||.|++.... .++..++ ..+++++.||++ ++ +.|+++.. .||||+..+
T Consensus 323 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~gdtl~~~~ 392 (689)
T TIGR00484 323 QLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDI------CA-AIGLKDTT---TGDTLCDPK 392 (689)
T ss_pred eEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCE------EE-EcCCCCCC---CCCEEeCCC
Confidence 999999999999999999876543 2333333 458999999999 88 88988653 699998654
Q ss_pred ChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeE----
Q psy4665 418 ALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDI---- 493 (673)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~i---- 493 (673)
+.... . ......+.+.+.|.+...+-.+.|.++|.++..+...+.|
T Consensus 393 ~~~~~--------~----------------------~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~ 442 (689)
T TIGR00484 393 IDVIL--------E----------------------RMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDP 442 (689)
T ss_pred Ccccc--------C----------------------CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECC
Confidence 21000 0 0011346777888888888888888888777664444443
Q ss_pred -----EeeecCCCC
Q psy4665 494 -----VHYGVGQVS 502 (673)
Q Consensus 494 -----v~~~vG~it 502 (673)
+-.|.|.+.
T Consensus 443 etge~il~g~GelH 456 (689)
T TIGR00484 443 ETGQTIIAGMGELH 456 (689)
T ss_pred CCCCEEEEEeeHHH
Confidence 445566555
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1e-32 Score=290.53 Aligned_cols=267 Identities=21% Similarity=0.276 Sum_probs=218.2
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
|||||+|+.++|.+++ ||++..++.....++..|...++.+++.++|+||...|+++.| +.+++++++
T Consensus 37 vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D------~~ia~~Lr~ 110 (444)
T COG1160 37 VTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD------EEIAKILRR 110 (444)
T ss_pred CccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH------HHHHHHHHh
Confidence 8999999999999999 9999656567778899999999999999999999999999998 899999998
Q ss_pred hCCeeEEEc-cCCCcccCcCC-------------------------cc-cccCC--CCCCcccc-CCCCEEEEEeCCCCC
Q psy4665 78 SGMKYMVIN-PTNSVADDSNG-------------------------KD-VERRP--PADPSVLM-KRPPVVTIMGHVDHG 127 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~-------------------------~~-~~~~~--~~~~~~~~-~~~~~V~ivG~~n~G 127 (673)
.++|+.++. |.|+.+.+... +| +.... +....... ..+.+|+|+|.||+|
T Consensus 111 ~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvG 190 (444)
T COG1160 111 SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVG 190 (444)
T ss_pred cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCC
Confidence 889988888 88876432211 22 22222 11111111 367999999999999
Q ss_pred hhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCC----------Ccchhhhh-hccccCCeEEEEEE
Q psy4665 128 KTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AAFSNMRS-RGAHCTDIVVLVVA 195 (673)
Q Consensus 128 KSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----------~~f~~~~~-~~~~~aD~~vlVvd 195 (673)
||||+|+|++.. ...+..+|+|++.....+++ +++++.|+||+|. +.|+..+. .++..+|++++|+|
T Consensus 191 KSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviD 269 (444)
T COG1160 191 KSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVID 269 (444)
T ss_pred chHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEE
Confidence 999999999975 67788899999999999988 7899999999994 45554443 56789999999999
Q ss_pred CCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 196 ADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 196 a~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
|++|..+|+.+.+.++.+.+.|+++++||||+... ..++.+..+..... +-...+++++||++|.+++++++.
T Consensus 270 a~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~----~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 270 ATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP----FLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc----cccCCeEEEEEecCCCChHHHHHH
Confidence 99999999999999999999999999999998653 34445555554322 234689999999999999999999
Q ss_pred HHHHHHHHH
Q psy4665 273 IERTKNMLL 281 (673)
Q Consensus 273 i~~~~~~~~ 281 (673)
+.+..+.+.
T Consensus 346 i~~~~~~~~ 354 (444)
T COG1160 346 IKEIYECAT 354 (444)
T ss_pred HHHHHHHhc
Confidence 998877653
No 15
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-31 Score=309.77 Aligned_cols=290 Identities=25% Similarity=0.293 Sum_probs=220.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc------------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV------------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~------------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|+|||||+++|+.... .....+|+|.+.....+.+ ++.+++|+|||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 4688999999999999999999975210 1113579999998888888 78999999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCcee
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|...+.++++.+|++++|+|+.+|+..|+..++..+...++|+|+++||||+.+++..+..+.+...... .....
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~----~~~~~ 160 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA----NAVPI 160 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC----CceeE
Confidence 99999999999999999999999999999999999999999999999999999987777766666553111 00122
Q ss_pred EEEeeccCCCC--------------------------------------hhhHHHHHHHHHHHH----Hh-CCCCccccc
Q psy4665 255 AVPISALTGTN--------------------------------------VDNLTEAIERTKNML----LA-QGITVEDLG 291 (673)
Q Consensus 255 ~v~iSA~~g~g--------------------------------------v~~l~~~i~~~~~~~----~~-~~~~~ee~~ 291 (673)
.+|+|+..+.+ ..++++.+.+..+.+ ++ .+++.+++.
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 34555533220 123334443333333 32 234444432
Q ss_pred ----------CCceeeeeccccCCCcchhHHHHHHHHHhhh-----------------cccCCCCCeEEEEEEEEeecCC
Q psy4665 292 ----------GDIQAVPISALTGTNVDNLTEAIVAQAEIMH-----------------LKADYGGPVEAMIVESKFDTHR 344 (673)
Q Consensus 292 ----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~-----------------~~~~~~~~~~~~V~e~~~~~~~ 344 (673)
..+|++++||.++.|+..||++|..+.+.+. ..+++++|+.++||++..+++.
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 320 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFV 320 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCC
Confidence 3346889999999999999999998865331 1235678999999999999999
Q ss_pred cEEEEEEeeecEEeeCCEEEeCCcce--EEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeec
Q psy4665 345 GKLATALVQRGTLKKGAIVVAGQAWA--KVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSV 416 (673)
Q Consensus 345 G~v~~~~V~~G~Lk~g~~v~~g~~~~--kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~ 416 (673)
|+++++||++|+|++||.|++..... ++..++ ..+++++.||++ ++ +.|++++. .||||+..
T Consensus 321 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~gdtl~~~ 390 (691)
T PRK12739 321 GRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDI------AA-AVGLKDTT---TGDTLCDE 390 (691)
T ss_pred CeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCE------EE-EeCCCccc---CCCEEeCC
Confidence 99999999999999999998765433 333333 568999999999 88 88988753 69999865
Q ss_pred C
Q psy4665 417 E 417 (673)
Q Consensus 417 ~ 417 (673)
+
T Consensus 391 ~ 391 (691)
T PRK12739 391 K 391 (691)
T ss_pred C
Confidence 4
No 16
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-31 Score=302.85 Aligned_cols=296 Identities=28% Similarity=0.310 Sum_probs=223.3
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc--------c----------ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS--------V----------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~--------~----------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
..+.+||+|+||.+||||||.++|+... . .....+|+|+......+.|..++.++|||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4578999999999999999999996522 1 112358999999999999832499999999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcc--------
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGIT-------- 245 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~-------- 245 (673)
-+|.....++++.+|++++|+|+.+|+++||...|+++...++|.++++||||+..++.....+.+......
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999888777776654111
Q ss_pred c---cccCCcee------EEEe-eccCCC--------C-----hhhHHHHHHH----HHHHHHhCC-CCccccc------
Q psy4665 246 V---EDLGGDIQ------AVPI-SALTGT--------N-----VDNLTEAIER----TKNMLLAQG-ITVEDLG------ 291 (673)
Q Consensus 246 ~---~~~~~~~~------~v~i-SA~~g~--------g-----v~~l~~~i~~----~~~~~~~~~-~~~ee~~------ 291 (673)
+ +.|.+.+. +..- ++.... + -..+.+.+.+ ..+.++++. ++.+++.
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 0 11222111 1111 222111 0 0112223332 333333322 3333332
Q ss_pred ----CCceeeeeccccCCCcchhHHHHHHHHHhhh------------------cccCCCCCeEEEEEEEEeecCCcEEEE
Q psy4665 292 ----GDIQAVPISALTGTNVDNLTEAIVAQAEIMH------------------LKADYGGPVEAMIVESKFDTHRGKLAT 349 (673)
Q Consensus 292 ----~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~------------------~~~~~~~~~~~~V~e~~~~~~~G~v~~ 349 (673)
...|+++.||.+|.|+..||+++..+.+.+. ...+.++|+.++||++..+++.|.+++
T Consensus 247 ~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~ 326 (697)
T COG0480 247 TIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTF 326 (697)
T ss_pred hhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEE
Confidence 2346889999999999999999999865320 123457999999999999999999999
Q ss_pred EEeeecEEeeCCEEEeCCcceE--EEEe---c---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecC
Q psy4665 350 ALVQRGTLKKGAIVVAGQAWAK--VRSI---S---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 350 ~~V~~G~Lk~g~~v~~g~~~~k--vr~i---~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~ 417 (673)
+||+||+|++|+.++++....+ |..+ + ..+++++.||++ ++ +.|+++.. .|||+|+.+
T Consensus 327 ~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I------~a-~~Gl~~~~---tGdTl~~~~ 392 (697)
T COG0480 327 VRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDI------VA-LVGLKDAT---TGDTLCDEN 392 (697)
T ss_pred EEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccE------EE-EEcccccc---cCCeeecCC
Confidence 9999999999999998876533 3333 3 668999999999 88 99999875 499999776
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.6e-31 Score=296.52 Aligned_cols=432 Identities=20% Similarity=0.213 Sum_probs=286.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--cc--------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--VV--------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~~--------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
.+.++|+|+||++||||||+++|+... +. ....+|+|.......+.+ ++.+++|||||||.+|
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF 81 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh
Confidence 357899999999999999999998632 21 123468888887777877 6889999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccc--cccCCcee
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV--EDLGGDIQ 254 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 254 (673)
...+.++++.+|++++|+|+.+|...|+..+|..+...++|.++++||+|+++++.+...+.+......+ ......+|
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999888777666655542111 00112356
Q ss_pred EEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEE
Q psy4665 255 AVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAM 334 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~ 334 (673)
++++||++|.+..+.. ....|+..|+++|..+.+ .+..++++|+.++
T Consensus 162 Vi~~SA~~G~~~~~~~-------------------------------~~~~~i~~Lld~Ii~~iP--~P~~~~~~Pl~~~ 208 (607)
T PRK10218 162 IVYASALNGIAGLDHE-------------------------------DMAEDMTPLYQAIVDHVP--APDVDLDGPFQMQ 208 (607)
T ss_pred EEEeEhhcCcccCCcc-------------------------------ccccchHHHHHHHHHhCC--CCCCCCCCCeEEE
Confidence 6666666665432110 012367889998887643 3334567899999
Q ss_pred EEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec------ccccceeccCccccccCcEEEeeeCCC
Q psy4665 335 IVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKI 403 (673)
Q Consensus 335 V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~ 403 (673)
|++++++++.|+++++||++|+|++||.|++.+. ..+|..++ +.++++|.|||+ |+ +.|+++
T Consensus 209 V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdI------va-i~gl~~ 281 (607)
T PRK10218 209 ISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDI------VA-ITGLGE 281 (607)
T ss_pred EEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCE------EE-EECccc
Confidence 9999999999999999999999999999976543 24565554 568999999999 88 899887
Q ss_pred CCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCC---CccHHH----
Q psy4665 404 NPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDV---DGSVEA---- 476 (673)
Q Consensus 404 ~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~---~GsleA---- 476 (673)
+. .||||+..+++ ... . ......+.+...+.+.. .|--..
T Consensus 282 ~~---~GdTl~~~~~~-~~l-------~----------------------~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~ 328 (607)
T PRK10218 282 LN---ISDTVCDTQNV-EAL-------P----------------------ALSVDEPTVSMFFCVNTSPFCGKEGKFVTS 328 (607)
T ss_pred cc---cCcEEecCCCc-ccC-------C----------------------CCCCCCCeEEEEEEeCCCccccchhhhhhH
Confidence 55 59999876542 111 0 01124566777776655 444333
Q ss_pred --HHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhH-HhHHHHcCCeEEEe--chhhHHHHHH
Q psy4665 477 --LLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAA-KTSAEELGVTVKQF--NVIYKLVEDV 551 (673)
Q Consensus 477 --i~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~-~~~a~~~~V~i~~~--~iIY~l~~~~ 551 (673)
+++.|.+...+.+.+.+-..+ .++..++++-=.+.-++ .+..++.|+.+... .|+|+=.+ -
T Consensus 329 ~~~~~rL~~~~~~D~sl~v~~~~-------------~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~-g 394 (607)
T PRK10218 329 RQILDRLNKELVHNVALRVEETE-------------DADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREID-G 394 (607)
T ss_pred HHHHHHHHHhhCCCCeEEEEEcC-------------CCCeEEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEEC-C
Confidence 334555543356666664411 11455555543333333 23333337766554 67887331 1
Q ss_pred HHHHhccCCceeEEEEeEEEEEeeeeEec----CCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccc
Q psy4665 552 KEEINAMLPHTYAEEVLGEANVLQMFLIT----DGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEE 627 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~~g~a~v~~~f~~~----~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~ 627 (673)
+ .++|..+-+ ..|-+-|.=. .+++++.+.|+.-..+ ... .+.|.--...|-.+..+
T Consensus 395 ~-----klEPi~~v~----i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-----~~~------~l~~~vP~~~l~~y~~~ 454 (607)
T PRK10218 395 R-----KQEPYENVT----LDVEEQHQGSVMQALGERKGDLKNMNPDGK-----GRV------RLDYVIPSRGLIGFRSE 454 (607)
T ss_pred E-----EeCCeEEEE----EEechhhHHHHHHHHHhcCCEEeccEECCC-----CEE------EEEEEcCHHHHhhHHHH
Confidence 1 234433322 1222222211 0345667777764221 001 12233355566667777
Q ss_pred cccccccc-eeEEEEcCCCCCCCCCCE
Q psy4665 628 VTSIKKEL-ECGLRLEDPSIEFEPGDT 653 (673)
Q Consensus 628 v~~~~~g~-ecgi~~~~~~~~~~~gD~ 653 (673)
.....+|. -+-..|.+|. .+..||+
T Consensus 455 l~s~T~G~g~~~~~f~~Y~-~~~~g~~ 480 (607)
T PRK10218 455 FMTMTSGTGLLYSTFSHYD-DVRPGEV 480 (607)
T ss_pred hhhhCCCeEEEEEEecCcc-CCCCCCC
Confidence 77777777 4666677777 6666663
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=7.5e-31 Score=296.92 Aligned_cols=297 Identities=28% Similarity=0.303 Sum_probs=221.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc---------------ccccccceeeeEEEEEEEec--C--CeEEEEEeCCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV---------------VKSEFGGITQHIGAFVVTLK--S--GEQVTFLDTPGHA 174 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~---------------~~~~~~g~T~~~~~~~v~~~--~--~~~i~liDTpG~~ 174 (673)
+.+|++++||+|||||||+++|+.... ..+..+|+|.......+.|. + ...++|||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 468999999999999999999986421 11234688887766666553 2 2578999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCce
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGDI 253 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~ 253 (673)
+|...+.++++.||++++|+|++++.+.++.+.|..+...++|+++|+||+|+.+++.++..+.+.+. +.. ..
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------~~ 155 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------AS 155 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999988888889999999999999876655444444332 110 11
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEE
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEA 333 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~ 333 (673)
+++++|| ++|.|+.+|++.|.... +.+..+++.|+.+
T Consensus 156 ~vi~vSA-----------------------------------------ktG~GI~~Lle~I~~~l--p~p~~~~~~pl~~ 192 (595)
T TIGR01393 156 EAILASA-----------------------------------------KTGIGIEEILEAIVKRV--PPPKGDPDAPLKA 192 (595)
T ss_pred eEEEeec-----------------------------------------cCCCCHHHHHHHHHHhC--CCCCCCCCCCeEE
Confidence 3454555 45555555555554432 2233456789999
Q ss_pred EEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec-----ccccceeccCccccccCcEEEeeeCCCCCC
Q psy4665 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS-----RKTLINTALGTVQRTSGTVKISLGFKINPF 406 (673)
Q Consensus 334 ~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~-----~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~ 406 (673)
+||+++.+++.|++++++|.+|+|++||.|++.++. .+++.+. ..+++++.|||+ +.++.|++++..
T Consensus 193 ~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdI------g~i~~~~~~~~~ 266 (595)
T TIGR01393 193 LIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEV------GYIIAGIKDVSD 266 (595)
T ss_pred EEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCCE------EEEeccccccCc
Confidence 999999999999999999999999999999776543 4455554 367889999998 775668877777
Q ss_pred CCCCCeEeecCChh-hHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcC
Q psy4665 407 CPSGDVDGSVEALL-DVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYT 485 (673)
Q Consensus 407 ~~~Gd~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~ 485 (673)
+..|||++..+++. +... . .....+.+..-+.+...+..+.|.++|.++.
T Consensus 267 ~~~Gdtl~~~~~~~~~~l~--------------------~---------~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~ 317 (595)
T TIGR01393 267 VRVGDTITHVKNPAKEPLP--------------------G---------FKEVKPMVFAGLYPIDTEDYEDLRDALEKLK 317 (595)
T ss_pred cCCCCEEECCCCccccCCC--------------------C---------CcCCCcEEEEEEEECCcccHHHHHHHHHHHh
Confidence 77899999765431 1110 0 1123467778888999999999999999998
Q ss_pred CCceEeeEE
Q psy4665 486 SALCRLDIV 494 (673)
Q Consensus 486 ~~~~~i~iv 494 (673)
-+...+.+-
T Consensus 318 ~eD~sl~~~ 326 (595)
T TIGR01393 318 LNDASLTYE 326 (595)
T ss_pred ccCCeEEEE
Confidence 877666653
No 19
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.7e-32 Score=279.61 Aligned_cols=253 Identities=33% Similarity=0.374 Sum_probs=207.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc---------------cccccccceeeeEEEEEEEec----CCeEEEEEeCCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS---------------VVKSEFGGITQHIGAFVVTLK----SGEQVTFLDTPG 172 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~---------------~~~~~~~g~T~~~~~~~v~~~----~~~~i~liDTpG 172 (673)
..+.+|.+|+.|.+||||||.++|+... ....+.+|+|+......+.+. ..+.++|+||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 4578999999999999999999996532 223456899998888777664 235788999999
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCC
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGG 251 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~ 251 (673)
|.+|.....|++..|.+++||+||+.|++.||......+.+.+.-+|-|+||+||+.++++++.+++.+. ++..
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~----- 160 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA----- 160 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764 2211
Q ss_pred ceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCe
Q psy4665 252 DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPV 331 (673)
Q Consensus 252 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~ 331 (673)
...+ .+||++|.|++++|++|... .+.++.+++.|+
T Consensus 161 -~dav-----------------------------------------~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pL 196 (603)
T COG0481 161 -SDAV-----------------------------------------LVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPL 196 (603)
T ss_pred -chhe-----------------------------------------eEecccCCCHHHHHHHHHhh--CCCCCCCCCCcc
Confidence 1223 57777888888888888766 445678889999
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcceEEEE----ec---ccccceeccCccccccCcEEEeeeCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRS----IS---RKTLINTALGTVQRTSGTVKISLGFKIN 404 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~kvr~----i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~ 404 (673)
.+.+|++|+|+++|.++++||..|++++||.+....++.+... ++ ..+.++..+|++ .-+++++|++
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeV------G~~~a~iK~v 270 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEV------GYIIAGIKDV 270 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCce------eEEEEeeeec
Confidence 9999999999999999999999999999999965444333222 22 445667778887 5578999999
Q ss_pred CCCCCCCeEeecCCh
Q psy4665 405 PFCPSGDVDGSVEAL 419 (673)
Q Consensus 405 ~~~~~Gd~l~~~~~~ 419 (673)
..++.|||+....++
T Consensus 271 ~d~~VGDTiT~~~~p 285 (603)
T COG0481 271 RDARVGDTITLASNP 285 (603)
T ss_pred ccCcccceEeccCCC
Confidence 999999999955544
No 20
>KOG0462|consensus
Probab=100.00 E-value=3.3e-32 Score=287.25 Aligned_cols=251 Identities=31% Similarity=0.383 Sum_probs=204.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc---------------cccccccceeeeEEEEEEEecC--CeEEEEEeCCCCCc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS---------------VVKSEFGGITQHIGAFVVTLKS--GEQVTFLDTPGHAA 175 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~---------------~~~~~~~g~T~~~~~~~v~~~~--~~~i~liDTpG~~~ 175 (673)
.+.+|++|+.|.+||||||.++|+.-. ...++.+|||+......+.+.+ .+.+++||||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 578999999999999999999996421 2334578999988877777643 26799999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeE
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|.....|.+..||+++|||||++|++.||...+..+.+++..+|.|+||+|++.++++++..++.+..-.. ..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccce
Confidence 99999999999999999999999999999999999999999999999999999999999999887652211 1245
Q ss_pred EEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEE
Q psy4665 256 VPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMI 335 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V 335 (673)
+ .+||++|.|+.++|++|++. .+.+....+.|+++.+
T Consensus 213 i-----------------------------------------~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 213 I-----------------------------------------YVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLI 249 (650)
T ss_pred E-----------------------------------------EEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHh
Confidence 5 45555666666677777665 3445667789999999
Q ss_pred EEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc----e-EEEEec--ccccceeccCccccccCcEEEeeeCCCCCCCC
Q psy4665 336 VESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW----A-KVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINPFCP 408 (673)
Q Consensus 336 ~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~----~-kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~ 408 (673)
|++++|+++|.+++++|..|.+++||.|.+..+. . .|..|+ ..++.+..+|++ ..++++++++..+.
T Consensus 250 fds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqv------GyIi~~mr~~~ea~ 323 (650)
T KOG0462|consen 250 FDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQV------GYIICNMRNVKEAQ 323 (650)
T ss_pred hhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeeccccc------ceeEeccccccccc
Confidence 9999999999999999999999999999654432 2 223355 566777778777 55788999888888
Q ss_pred CCCeEeecC
Q psy4665 409 SGDVDGSVE 417 (673)
Q Consensus 409 ~Gd~l~~~~ 417 (673)
.|||++...
T Consensus 324 IGdTi~~~~ 332 (650)
T KOG0462|consen 324 IGDTIAHKS 332 (650)
T ss_pred ccceeeecc
Confidence 999998766
No 21
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-31 Score=276.75 Aligned_cols=276 Identities=27% Similarity=0.332 Sum_probs=219.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~~ 162 (673)
...+++++||++||||||+.+|+... ....+.+|.|.+.....++. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 45689999999999999999996521 12334689999999998887 66
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-------ChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-------VMEQTVESIRMAREAKVP-IIVAINKIDKPAADIER 234 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-------~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~ 234 (673)
+.++++|||||.+|...+..++++||++|||||+..+ ...||++++-.++.+++. +|+++||||+++++.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 7899999999999999999999999999999999997 788999999999999997 89999999999998877
Q ss_pred HHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhH
Q psy4665 235 TKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 311 (673)
Q Consensus 235 ~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll 311 (673)
+.+...+.......++ .+++++|+||..|.|+.+.-+ ..-|++|. .|+
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~--------------------------~~pWY~Gp---TLl 215 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSE--------------------------NMPWYKGP---TLL 215 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCc--------------------------CCcCccCC---hHH
Confidence 6665544433233333 247899999999999866431 23466665 466
Q ss_pred HHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCc
Q psy4665 312 EAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGT 387 (673)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~ 387 (673)
++|... ..+....+.|++..|.+++...+.|++..+||.+|.|++|+.++..+. .+.|+++. .++++.|.|||
T Consensus 216 eaLd~~---~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD 292 (428)
T COG5256 216 EALDQL---EPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGD 292 (428)
T ss_pred HHHhcc---CCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCC
Confidence 666632 223334689999999999999999999999999999999999987765 47788866 88999999999
Q ss_pred cccccCcEEEeeeCCC--CCCCCCCCeEeecCChhhHHHHHHHHH
Q psy4665 388 VQRTSGTVKISLGFKI--NPFCPSGDVDGSVEALLDVFDTYTSAL 430 (673)
Q Consensus 388 ~~~~~g~v~~i~gl~~--~~~~~~Gd~l~~~~~~~~~~~~~~~~~ 430 (673)
. |++ .++. ...+++||+++...+++.+.+.|.+++
T Consensus 293 ~------i~~--~vrgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i 329 (428)
T COG5256 293 N------VGF--NVRGVEKNDIRRGDVIGHSDNPPTVSPEFTAQI 329 (428)
T ss_pred e------EEE--EecCCchhccCCccEeccCCCCcccccceEEEE
Confidence 9 883 3332 234789999999888766655555443
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.8e-30 Score=289.55 Aligned_cols=339 Identities=19% Similarity=0.202 Sum_probs=241.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-cc---------------------cccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VV---------------------KSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~---------------------~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.+.++|+|+||+|+|||||+++|+... .. ....+|+|.......+.+ ++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 567899999999999999999986311 10 112357777777777877 6889999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc--c
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV--E 247 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~--~ 247 (673)
|||.+|.....++++.+|++|+|+|+++++..++..+++.+...++|+++++||+|+..++..++.+.+... +... .
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 999999988888999999999999999999999999999998899999999999999888877776666554 1110 0
Q ss_pred --------ccCCcee------EEEeeccCCC----------C---h-----hhHHHHHHHHHHHHHh---CCCCcccc--
Q psy4665 248 --------DLGGDIQ------AVPISALTGT----------N---V-----DNLTEAIERTKNMLLA---QGITVEDL-- 290 (673)
Q Consensus 248 --------~~~~~~~------~v~iSA~~g~----------g---v-----~~l~~~i~~~~~~~~~---~~~~~ee~-- 290 (673)
.+.+-++ +++-....+. . + .++.+.+.+.. .+++ +.++.+..
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~~~~~~~~ 246 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEFDLAAFHG 246 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccccCHHHHhc
Confidence 0000001 1110110010 0 0 01111111111 1122 12332222
Q ss_pred cCCceeeeeccccCCCcchhHHHHHHHHHhhhccc-------CCCCCeEEEEEEEEe--e-cCCcEEEEEEeeecEEeeC
Q psy4665 291 GGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKA-------DYGGPVEAMIVESKF--D-THRGKLATALVQRGTLKKG 360 (673)
Q Consensus 291 ~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~-------~~~~~~~~~V~e~~~--~-~~~G~v~~~~V~~G~Lk~g 360 (673)
....|+|++||.+|.|+..||+.+..+.+.+.... ..+.++.|+||++.. | +++|+++++||+||+|+.|
T Consensus 247 ~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g 326 (527)
T TIGR00503 247 GEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKG 326 (527)
T ss_pred CCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCC
Confidence 23458999999999999999999999976443211 124679999999988 7 5899999999999999999
Q ss_pred CEEEeCCcceEEEE--ec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHH
Q psy4665 361 AIVVAGQAWAKVRS--IS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCR 432 (673)
Q Consensus 361 ~~v~~g~~~~kvr~--i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~ 432 (673)
+.|++.++..++|. ++ +.++++|.|||+ ++ +.+++++. .||||+..+. . .|.
T Consensus 327 ~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI------~~-~~~~~~~~---~GDtl~~~~~---~--~~~----- 386 (527)
T TIGR00503 327 MKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDI------IG-LHNHGTIQ---IGDTFTQGEK---I--KFT----- 386 (527)
T ss_pred CEEEecCCCCcEEecchhhhhcCCceEcceeCCCCE------EE-EECCCCcc---cCCEecCCCc---e--eec-----
Confidence 99988776655553 33 568999999999 88 88988766 4999987321 1 110
Q ss_pred hhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEe
Q psy4665 433 LDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVH 495 (673)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~ 495 (673)
......+.+..-|.+...+-.+.+.++|.++..+.. +++-.
T Consensus 387 ---------------------~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~ 427 (527)
T TIGR00503 387 ---------------------GIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFR 427 (527)
T ss_pred ---------------------CCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEE
Confidence 001234678888999999999999999999987553 55543
No 23
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.98 E-value=1.4e-30 Score=295.11 Aligned_cols=424 Identities=25% Similarity=0.270 Sum_probs=279.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc---------------ccccccceeeeEEEEEEEec----CCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV---------------VKSEFGGITQHIGAFVVTLK----SGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~---------------~~~~~~g~T~~~~~~~v~~~----~~~~i~liDTpG~ 173 (673)
.+.+|++|+||++||||||+++|+.... ..+..+|+|.......+.|. .+..++|||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 4678999999999999999999976321 11234688887766666552 2468999999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCc
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGD 252 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~ 252 (673)
.+|...+.++++.+|++++|+|++++.+.++.+.|..+...++|+++|+||+|+.+++.+...+.+.+. +.. .
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID------A 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC------c
Confidence 999999999999999999999999999999999998888889999999999999876655544444332 110 1
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
.+++ ++||++|.|+.+|++.|.... +.+..+++.|+.
T Consensus 159 ~~vi-----------------------------------------~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~ 195 (600)
T PRK05433 159 SDAV-----------------------------------------LVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLK 195 (600)
T ss_pred ceEE-----------------------------------------EEecCCCCCHHHHHHHHHHhC--ccccCCCCCCce
Confidence 1345 455555555555555555432 223345678999
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec-----ccccceeccCccccccCcEEEeeeCCCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS-----RKTLINTALGTVQRTSGTVKISLGFKINP 405 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~-----~~~v~~a~~G~~~~~~g~v~~i~gl~~~~ 405 (673)
++||+++.+++.|++++++|.+|+|++||.|++.++. .+|..+. ..+++++.|||+ +.++.+++++.
T Consensus 196 ~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdI------g~i~~~ik~~~ 269 (600)
T PRK05433 196 ALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEV------GYIIAGIKDVR 269 (600)
T ss_pred EEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCE------EEEeccccccc
Confidence 9999999999999999999999999999999876543 4455544 567899999998 77556777666
Q ss_pred CCCCCCeEeecCChh-hHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhc
Q psy4665 406 FCPSGDVDGSVEALL-DVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTY 484 (673)
Q Consensus 406 ~~~~Gd~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~ 484 (673)
.++.|||++..+++. .... . .....+.+..-+.+...+..+.|.++|.++
T Consensus 270 ~~~~Gdtl~~~~~~~~~~l~--------------------~---------~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL 320 (600)
T PRK05433 270 DARVGDTITLAKNPAEEPLP--------------------G---------FKEVKPMVFAGLYPVDSDDYEDLRDALEKL 320 (600)
T ss_pred ccCCCCEEECCCCccccCCC--------------------C---------CCCCCcEEEEEEEECCccCHHHHHHHHHHH
Confidence 777899999776531 0110 0 112346777778888888999999999999
Q ss_pred CCCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCC----CCHhH--HhHHHHcCCeEEE--echhhHHH--------
Q psy4665 485 TSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTT----LHPAA--KTSAEELGVTVKQ--FNVIYKLV-------- 548 (673)
Q Consensus 485 ~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~----~~~~~--~~~a~~~~V~i~~--~~iIY~l~-------- 548 (673)
.-+...+.+- ..++.+.+.||-+. +.-++ ..+.++.|+.+.. -+|+|+-.
T Consensus 321 ~~eD~sl~~~--------------~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g~~~~ 386 (600)
T PRK05433 321 QLNDASLTYE--------------PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDGEVIE 386 (600)
T ss_pred HHhCCeEEEE--------------ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCCcEEE
Confidence 8766666552 11222333343333 12222 2333445666554 35666631
Q ss_pred -HHHHH-----HHhccCCceeEEEEeEEEEEeeeeEec----CCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEee
Q psy4665 549 -EDVKE-----EINAMLPHTYAEEVLGEANVLQMFLIT----DGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKL 618 (673)
Q Consensus 549 -~~~~~-----~~~~~~~~~~~~~~~g~a~v~~~f~~~----~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i 618 (673)
++-.. .+...++|..+-+ ..|..-|.=. -.++.+.+.|+.-.++ .. .+.|+-..
T Consensus 387 ~~~p~~~pds~~~~~llEP~~~~~----i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~------~~------~i~~~~Pl 450 (600)
T PRK05433 387 VDNPSKLPDPGKIEEIEEPIVKAT----IIVPQEYVGAVMELCQEKRGVQKDMEYLGN------RV------ELTYELPL 450 (600)
T ss_pred EECcccCCCccccceEECCEEEEE----EEecHHHHHHHHHHHHHcCCEEeCcEecCC------eE------EEEEEech
Confidence 00000 0112222222221 1111111100 0235667777765332 11 24456677
Q ss_pred ecc-cccccccccccccc-eeEEEEcCCCCCCCCCCEE
Q psy4665 619 ESM-KHLKEEVTSIKKEL-ECGLRLEDPSIEFEPGDTI 654 (673)
Q Consensus 619 ~sl-~~~k~~v~~~~~g~-ecgi~~~~~~~~~~~gD~i 654 (673)
..| ..+-++.+++.+|. ..-..+. ++++.|.+
T Consensus 451 ~e~~~~~~~~Lks~T~G~gs~~~~~~----~Y~~~~~~ 484 (600)
T PRK05433 451 AEIVFDFFDRLKSVSRGYASLDYEFI----GYRESDLV 484 (600)
T ss_pred HHhhhhHHHHhHhhcCCEEEEEEEEC----CcccccEE
Confidence 888 88999999999997 3444444 44455543
No 24
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.98 E-value=5.9e-31 Score=272.62 Aligned_cols=263 Identities=27% Similarity=0.330 Sum_probs=212.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc--c--------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV--V--------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~--~--------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
...+||||+.|++||||||++.|+..+. . ....+|+|+-.....+.| ++.+++++|||||.+|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADF 81 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADF 81 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCc
Confidence 4678999999999999999999987531 1 123589998877777888 7899999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccc--cccCCcee
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV--EDLGGDIQ 254 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 254 (673)
....+|.++..|+++|++||.+|.++||+-.++.+.+.+.+.|+|+||+|++++.++++..+.......+ ..-.-++|
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999888776655432211 11112678
Q ss_pred EEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEE
Q psy4665 255 AVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAM 334 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~ 334 (673)
++..||+.|..-.+ .......+..|+++|...- +.+..+.++|++..
T Consensus 162 ivYAS~~~G~a~~~-------------------------------~~~~~~~m~pLfe~I~~hv--p~P~~~~d~PlQ~q 208 (603)
T COG1217 162 IVYASARNGTASLD-------------------------------PEDEADDMAPLFETILDHV--PAPKGDLDEPLQMQ 208 (603)
T ss_pred EEEeeccCceeccC-------------------------------ccccccchhHHHHHHHHhC--CCCCCCCCCCeEEE
Confidence 99999998854211 1112234788999998874 34557889999999
Q ss_pred EEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec------ccccceeccCccccccCcEEEeeeCCC
Q psy4665 335 IVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKI 403 (673)
Q Consensus 335 V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~ 403 (673)
|...-++++.|++..+||++|++|+|+.+..-.. .++|..++ +.++++|.|||+ |+ ++|+.+
T Consensus 209 vt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDI------Va-iaG~~~ 281 (603)
T COG1217 209 VTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDI------VA-IAGLED 281 (603)
T ss_pred EEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCE------EE-EcCccc
Confidence 9999999999999999999999999998843222 35555554 678999999999 88 999887
Q ss_pred CCCCCCCCeEeecCCh
Q psy4665 404 NPFCPSGDVDGSVEAL 419 (673)
Q Consensus 404 ~~~~~~Gd~l~~~~~~ 419 (673)
+. .|||+|..+++
T Consensus 282 ~~---igdTi~d~~~~ 294 (603)
T COG1217 282 IN---IGDTICDPDNP 294 (603)
T ss_pred cc---ccccccCCCCc
Confidence 54 69999987764
No 25
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=8.6e-31 Score=288.52 Aligned_cols=266 Identities=31% Similarity=0.381 Sum_probs=204.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-------------------------------ccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-------------------------------VKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-------------------------------~~~~~~g~T~~~~~~~v~~~~ 161 (673)
+...+|+++||+|||||||+++|+.... ..+..+|+|++.....+.+ +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-D 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-C
Confidence 3457899999999999999999974321 1123589999999888887 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCC--CChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHHH---H
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD--GVMEQTVESIRMAREAKV-PIIVAINKIDKPAADIER---T 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~--g~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~~---~ 235 (673)
+.+++|||||||++|...+..++..+|++++|+|+++ +...++.+++..+...++ |+++++||+|+.+.+.+. .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 7899999999999998877778899999999999999 889999999999888887 589999999997644322 2
Q ss_pred HHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHH
Q psy4665 236 KNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 312 (673)
Q Consensus 236 ~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~ 312 (673)
.+.+.+. +..++ ..++++++||++|.|++++.+ ..+|++| ..|++
T Consensus 163 ~~~i~~~---l~~~g~~~~~~~ii~iSA~~g~gi~~~~~--------------------------~~~wy~g---~~L~~ 210 (425)
T PRK12317 163 KEEVSKL---LKMVGYKPDDIPFIPVSAFEGDNVVKKSE--------------------------NMPWYNG---PTLLE 210 (425)
T ss_pred HHHHHHH---HHhhCCCcCcceEEEeecccCCCcccccc--------------------------CCCcccH---HHHHH
Confidence 2222221 11111 136899999999999987653 2456665 45777
Q ss_pred HHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCcc
Q psy4665 313 AIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTV 388 (673)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~ 388 (673)
+|... .......+.|++..|.+++..++.|+++.|+|.+|++++||.+++++. ..+|++|. +.++++|.||+.
T Consensus 211 ~l~~~---~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~ 287 (425)
T PRK12317 211 ALDNL---KPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDN 287 (425)
T ss_pred HHhcC---CCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCe
Confidence 76543 222334578999999999999999999999999999999999987653 57899987 889999999999
Q ss_pred ccccCcEEEee-eCCCCCCCCCCCeEeecCChhh
Q psy4665 389 QRTSGTVKISL-GFKINPFCPSGDVDGSVEALLD 421 (673)
Q Consensus 389 ~~~~g~v~~i~-gl~~~~~~~~Gd~l~~~~~~~~ 421 (673)
|++.+ +++ ...+++||+++..++++.
T Consensus 288 ------v~i~l~~~~-~~~i~rG~vl~~~~~~~~ 314 (425)
T PRK12317 288 ------IGFNVRGVG-KKDIKRGDVCGHPDNPPT 314 (425)
T ss_pred ------EEEEECCCC-HHHccCccEecCCCCCCC
Confidence 87422 322 224568999998765433
No 26
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=1.3e-30 Score=286.42 Aligned_cols=262 Identities=25% Similarity=0.317 Sum_probs=202.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~ 161 (673)
+...+|+++||+++|||||+.+|+... ...+..+|+|.+.....+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 345789999999999999999997521 01223578999998888877 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCC--CCc
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKP--AAD 231 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~--~~~ 231 (673)
++.++|+|||||.+|...+..++..+|++++|+|+++|.+ .||.++|..+..+++| +|+++||||+. +++
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 8899999999999999999999999999999999999974 7999999999999998 67899999954 333
Q ss_pred ---HHHHHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCC
Q psy4665 232 ---IERTKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 305 (673)
Q Consensus 232 ---~~~~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~ 305 (673)
.+++.+++... +...+ ..++++|+||.+|+|+.+..+ ..+|++|.
T Consensus 164 ~~~~~~i~~~i~~~---l~~~g~~~~~~~~ipiSa~~g~ni~~~~~--------------------------~~~Wy~G~ 214 (446)
T PTZ00141 164 QERYDEIKKEVSAY---LKKVGYNPEKVPFIPISGWQGDNMIEKSD--------------------------NMPWYKGP 214 (446)
T ss_pred HHHHHHHHHHHHHH---HHhcCCCcccceEEEeecccCCCcccCCC--------------------------CCcccchH
Confidence 33333333332 22122 258899999999999865311 23566653
Q ss_pred CcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccc
Q psy4665 306 NVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLI 381 (673)
Q Consensus 306 gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~ 381 (673)
.|+++|.... .+....+.|++..|.+++..++.|+++.++|.+|++++||.+++.+. ..+|++|. +.+++
T Consensus 215 ---tL~~~l~~~~---~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~ 288 (446)
T PTZ00141 215 ---TLLEALDTLE---PPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLA 288 (446)
T ss_pred ---HHHHHHhCCC---CCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccC
Confidence 4666665431 22334578999999999999999999999999999999999987765 47888887 88999
Q ss_pred eeccCccccccCcEEEeeeCCC--CCCCCCCCeEeecCC
Q psy4665 382 NTALGTVQRTSGTVKISLGFKI--NPFCPSGDVDGSVEA 418 (673)
Q Consensus 382 ~a~~G~~~~~~g~v~~i~gl~~--~~~~~~Gd~l~~~~~ 418 (673)
+|.||+. |++ .|++ ...+++||+++..++
T Consensus 289 ~a~aG~~------v~i--~L~~i~~~~v~rG~vl~~~~~ 319 (446)
T PTZ00141 289 EAVPGDN------VGF--NVKNVSVKDIKRGYVASDSKN 319 (446)
T ss_pred EECCCCE------EEE--EECCCCHHHcCCceEEecCCC
Confidence 9999999 884 3333 234668999998643
No 27
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=3.9e-30 Score=279.69 Aligned_cols=264 Identities=28% Similarity=0.289 Sum_probs=197.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc----------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~ 175 (673)
.+...+|+++||+|||||||+++|++.. ...+..+|+|.+.....+.. ++.+++|+|||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 3456899999999999999999997631 11223689999887666655 567899999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCc
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGD 252 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~ 252 (673)
|...+.+++..+|++++|+|+++|...|+.+++..+...++| +|+++||||+.+.. .+.+.+++.............
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 998888899999999999999999999999999999999999 67899999997421 111222222210000000124
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
++++++||++|.+-.. .++ .++..|++.|....+ .+..+.+.|++
T Consensus 168 ~~ii~vSa~~g~~~~~-------------------------------~~~--~~i~~Ll~~l~~~lp--~~~~~~~~p~r 212 (394)
T PRK12736 168 IPVIRGSALKALEGDP-------------------------------KWE--DAIMELMDAVDEYIP--TPERDTDKPFL 212 (394)
T ss_pred ccEEEeeccccccCCC-------------------------------cch--hhHHHHHHHHHHhCC--CCCCCCCCCeE
Confidence 6889899888742110 111 246678887776532 23345578999
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC----cceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ----AWAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINP 405 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~----~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~ 405 (673)
..|++++.+++.|++++++|.+|++++||.+++.+ ...+|++|+ ++++++|.|||. |++ +.+++. .
T Consensus 213 ~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~------v~l~l~~i~~-~ 285 (394)
T PRK12736 213 MPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDN------VGVLLRGVDR-D 285 (394)
T ss_pred EEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCE------EEEEECCCcH-H
Confidence 99999999999999999999999999999997643 246889987 889999999999 773 344432 3
Q ss_pred CCCCCCeEeecCC
Q psy4665 406 FCPSGDVDGSVEA 418 (673)
Q Consensus 406 ~~~~Gd~l~~~~~ 418 (673)
.+++||+++..++
T Consensus 286 ~i~~G~vl~~~~~ 298 (394)
T PRK12736 286 EVERGQVLAKPGS 298 (394)
T ss_pred hCCcceEEecCCC
Confidence 4668999998754
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=2.6e-30 Score=283.66 Aligned_cols=274 Identities=23% Similarity=0.284 Sum_probs=206.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~ 161 (673)
+...+|+++||+++|||||+.+|+... ...+..+|+|.+.....+.+ +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 345789999999999999999996421 01233579999998888877 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCCC--Cc
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKPA--AD 231 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~~--~~ 231 (673)
++.++|+|||||++|...+..+++.+|++++|+|+++|.. .|+.+++..+...++| +|+++||||+.. ++
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 7899999999999999999999999999999999999743 6999999999999996 688999999862 22
Q ss_pred ---HHHHHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCC
Q psy4665 232 ---IERTKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 305 (673)
Q Consensus 232 ---~~~~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~ 305 (673)
.+++.+++... +...+ ..++++|+||++|+|+.+..+ ..+|++|
T Consensus 164 ~~~~~~i~~ei~~~---l~~~g~~~~~~~~ipiSa~~G~ni~~~~~--------------------------~~~Wy~g- 213 (447)
T PLN00043 164 KARYDEIVKEVSSY---LKKVGYNPDKIPFVPISGFEGDNMIERST--------------------------NLDWYKG- 213 (447)
T ss_pred HHHHHHHHHHHHHH---HHHcCCCcccceEEEEecccccccccccc--------------------------CCcccch-
Confidence 22223333222 12122 247899999999999865211 2355555
Q ss_pred CcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccc
Q psy4665 306 NVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLI 381 (673)
Q Consensus 306 gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~ 381 (673)
..|+++|.... .+....+.|++..|.+++..++.|+++.|+|.+|++++||.+++++. ..+|++|+ +.+++
T Consensus 214 --~tLl~~l~~i~---~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~ 288 (447)
T PLN00043 214 --PTLLEALDQIN---EPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQ 288 (447)
T ss_pred --HHHHHHHhhcC---CCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeC
Confidence 35777765432 23445678999999999999999999999999999999999988875 47888887 88999
Q ss_pred eeccCccccccCcEEEee-eCCCCCCCCCCCeEeecC-ChhhHHHHHHHH
Q psy4665 382 NTALGTVQRTSGTVKISL-GFKINPFCPSGDVDGSVE-ALLDVFDTYTSA 429 (673)
Q Consensus 382 ~a~~G~~~~~~g~v~~i~-gl~~~~~~~~Gd~l~~~~-~~~~~~~~~~~~ 429 (673)
+|.||+. |++.+ +++ ...+++|++++..+ ++......|+++
T Consensus 289 ~a~aGd~------v~i~l~~~~-~~~i~rG~vl~~~~~~p~~~~~~F~A~ 331 (447)
T PLN00043 289 EALPGDN------VGFNVKNVA-VKDLKRGYVASNSKDDPAKEAANFTSQ 331 (447)
T ss_pred EecCCCe------EEEEECCCC-HhhCCCccEEccCCCCCCccccEEEEE
Confidence 9999999 88433 221 24467899999864 332333344443
No 29
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=1.3e-29 Score=294.61 Aligned_cols=294 Identities=25% Similarity=0.330 Sum_probs=215.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc------------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV------------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~------------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|+|||||+++|+..... ....+++|.......+.+ ++.+++|||||||.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence 35789999999999999999999753210 111367787777777887 68899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccccc-----
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVED----- 248 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~----- 248 (673)
+|...+..+++.+|++++|+|++++...++...|..+...++|+++++||+|+.+++..+..+.++.. +.....
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999998887777776544 111000
Q ss_pred -----cCCceeEEEeecc-----C-CCC-----------------hhhHHHHHHHHH----HHHHhC-CCCccccc----
Q psy4665 249 -----LGGDIQAVPISAL-----T-GTN-----------------VDNLTEAIERTK----NMLLAQ-GITVEDLG---- 291 (673)
Q Consensus 249 -----~~~~~~~v~iSA~-----~-g~g-----------------v~~l~~~i~~~~----~~~~~~-~~~~ee~~---- 291 (673)
+.+.+..+...+. . +.. ..++++.+.+.. +.++++ .++.+++.
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0000111110100 0 000 122333333332 333332 24444432
Q ss_pred ------CCceeeeeccccCCCcchhHHHHHHHHHhhhc----------------ccCCCCCeEEEEEEEEeecCCcEEEE
Q psy4665 292 ------GDIQAVPISALTGTNVDNLTEAIVAQAEIMHL----------------KADYGGPVEAMIVESKFDTHRGKLAT 349 (673)
Q Consensus 292 ------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~----------------~~~~~~~~~~~V~e~~~~~~~G~v~~ 349 (673)
..+|++++||.+|.|++.||++|..+.+.+.. .+++++|+.++||+++.+++.|++++
T Consensus 245 ~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~ 324 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTY 324 (687)
T ss_pred HHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEE
Confidence 34578899999999999999999998654321 22557899999999999999999999
Q ss_pred EEeeecEEeeCCEEEeCCcce--EEEE---ec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecC
Q psy4665 350 ALVQRGTLKKGAIVVAGQAWA--KVRS---IS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 350 ~~V~~G~Lk~g~~v~~g~~~~--kvr~---i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~ 417 (673)
+||++|+|++||.+++..... ++.. ++ ..+++++.||++ ++ +.|+++.. .||||+..+
T Consensus 325 ~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~gdtl~~~~ 390 (687)
T PRK13351 325 LRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDI------VA-VAGLKELE---TGDTLHDSA 390 (687)
T ss_pred EEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCE------EE-EECcccCc---cCCEEeCCC
Confidence 999999999999998765432 3333 33 568999999999 87 88988764 599998654
No 30
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=6.7e-30 Score=278.02 Aligned_cols=265 Identities=28% Similarity=0.279 Sum_probs=200.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC-------c---------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT-------S---------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~-------~---------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
+...+|+++||+|||||||+++|++. + ......+|+|.+.....+.. ++.+++|+|||||++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHH
Confidence 34578999999999999999999862 1 11233689999987766665 5678999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCCCCCc--HHHHHHHHHHcCccccccCCce
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
...+.+++..+|++++|+|+.+|...|+.+++..+...++|.+ +++||||+.+.. .+....++......+...+.++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~ 168 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCce
Confidence 9888889999999999999999999999999999999999965 589999996421 1112222222111110011257
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEE
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEA 333 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~ 333 (673)
+++++||++|.|... ..+| ..++..|+++|....+ .+..+.+.|++.
T Consensus 169 ~ii~~Sa~~g~n~~~-----------------------------~~~w--~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~ 215 (396)
T PRK12735 169 PIIRGSALKALEGDD-----------------------------DEEW--EAKILELMDAVDSYIP--EPERAIDKPFLM 215 (396)
T ss_pred eEEecchhccccCCC-----------------------------CCcc--cccHHHHHHHHHhcCC--CCCccCCCCeEE
Confidence 899999999987421 1122 2357889998876532 234456789999
Q ss_pred EEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC----cceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCCC
Q psy4665 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ----AWAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINPF 406 (673)
Q Consensus 334 ~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~----~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~~ 406 (673)
.|.+++..++.|++++++|.+|++++||.+++.+ ...+|++|+ ++++++|.||+. |++ +.+++. ..
T Consensus 216 ~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~------v~l~L~~i~~-~~ 288 (396)
T PRK12735 216 PIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDN------VGVLLRGTKR-ED 288 (396)
T ss_pred EEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCE------EEEEeCCCcH-HH
Confidence 9999999999999999999999999999997654 246788887 889999999999 874 334432 45
Q ss_pred CCCCCeEeecCC
Q psy4665 407 CPSGDVDGSVEA 418 (673)
Q Consensus 407 ~~~Gd~l~~~~~ 418 (673)
+++|++|+..++
T Consensus 289 i~rG~vl~~~~~ 300 (396)
T PRK12735 289 VERGQVLAKPGS 300 (396)
T ss_pred CCcceEEEcCCC
Confidence 678999998754
No 31
>CHL00071 tufA elongation factor Tu
Probab=99.97 E-value=6.7e-30 Score=279.17 Aligned_cols=272 Identities=30% Similarity=0.317 Sum_probs=201.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc----------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
+...+|+++||+|||||||+++|++.. ...+..+|+|.+.....+.+ ++.+++|+|||||.+|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence 456889999999999999999998641 12233589999987776665 6778999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcH--HHHHHHHHHcCcccccc-CCc
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADI--ERTKNMLLAQGITVEDL-GGD 252 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~-~~~ 252 (673)
...+.+++..+|++++|+|+..|...|+.+++..+...++| +|+++||||+.+.+. +...+++....... .+ ...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 167 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY-DFPGDD 167 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh-CCCCCc
Confidence 98888899999999999999999999999999999999999 778999999975321 11222222221000 11 124
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
++++++||.+|.++-+-...+ ..+ ..+|+. ++..|+++|....+ .+..+.+.|++
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~~~--------~~~-------------~~~w~~--~~~~ll~~l~~~~~--~p~~~~~~p~r 222 (409)
T CHL00071 168 IPIVSGSALLALEALTENPKI--------KRG-------------ENKWVD--KIYNLMDAVDSYIP--TPERDTDKPFL 222 (409)
T ss_pred ceEEEcchhhcccccccCccc--------ccc-------------CCchhh--hHHHHHHHHHhhCC--CCCCCCCCCEE
Confidence 789999999998753211000 000 012222 46788888876532 23345678999
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEe-C---CcceEEEEec--ccccceeccCccccccCcEEEe-eeCCCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVA-G---QAWAKVRSIS--RKTLINTALGTVQRTSGTVKIS-LGFKINP 405 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~-g---~~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i-~gl~~~~ 405 (673)
+.|.+++.+++.|++++++|.+|++++||.+.+ + ....+|++|+ ++++++|.|||. |++. .+++. .
T Consensus 223 ~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~------v~i~l~~i~~-~ 295 (409)
T CHL00071 223 MAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDN------VGILLRGIQK-E 295 (409)
T ss_pred EEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCce------eEEEEcCCCH-H
Confidence 999999999999999999999999999999964 2 1347899987 789999999999 8733 34432 3
Q ss_pred CCCCCCeEeecCC
Q psy4665 406 FCPSGDVDGSVEA 418 (673)
Q Consensus 406 ~~~~Gd~l~~~~~ 418 (673)
.+++||+++..++
T Consensus 296 ~i~~G~vl~~~~~ 308 (409)
T CHL00071 296 DIERGMVLAKPGT 308 (409)
T ss_pred HcCCeEEEecCCC
Confidence 4668999998754
No 32
>KOG0465|consensus
Probab=99.97 E-value=1.8e-30 Score=276.71 Aligned_cols=337 Identities=23% Similarity=0.269 Sum_probs=248.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|.++.|.++|||||.++++.-. ....+.+|+|....+..+.| ++.++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCce
Confidence 478899999999999999999986521 11233589999999988888 58899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccc--------
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV-------- 246 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~-------- 246 (673)
+|.-..+|+++..|++|+|+|+..|++.||..+|++++++++|.|.++||||+.++++-++.+++.......
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPi 195 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPI 195 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccc
Confidence 999999999999999999999999999999999999999999999999999999999988888876542110
Q ss_pred ---cccCCcee-----EEEeeccCCCCh-----------------hhHHHHHHHHH----HHHHhCC-CCccccc-----
Q psy4665 247 ---EDLGGDIQ-----AVPISALTGTNV-----------------DNLTEAIERTK----NMLLAQG-ITVEDLG----- 291 (673)
Q Consensus 247 ---~~~~~~~~-----~v~iSA~~g~gv-----------------~~l~~~i~~~~----~~~~~~~-~~~ee~~----- 291 (673)
..|.+-++ .+......|..+ .+|.+.+.+.. ++++++. ++..++.
T Consensus 196 g~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr 275 (721)
T KOG0465|consen 196 GSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRR 275 (721)
T ss_pred cccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHH
Confidence 01111111 111222222221 23344443333 3334433 4444432
Q ss_pred -----CCceeeeeccccCCCcchhHHHHHHHHHhh------h------------cccCCC-CCeEEEEEEEEeecCCcEE
Q psy4665 292 -----GDIQAVPISALTGTNVDNLTEAIVAQAEIM------H------------LKADYG-GPVEAMIVESKFDTHRGKL 347 (673)
Q Consensus 292 -----~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~------~------------~~~~~~-~~~~~~V~e~~~~~~~G~v 347 (673)
.-.|++++||+++.|++.||+++..+.+.+ . +....+ .||.|..|+...+++ |.+
T Consensus 276 ~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqL 354 (721)
T KOG0465|consen 276 ATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQL 354 (721)
T ss_pred HHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cce
Confidence 233789999999999999999999986411 0 111122 399999999999999 999
Q ss_pred EEEEeeecEEeeCCEEEeCCcceEEEE-----ec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCCh
Q psy4665 348 ATALVQRGTLKKGAIVVAGQAWAKVRS-----IS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 348 ~~~~V~~G~Lk~g~~v~~g~~~~kvr~-----i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~ 419 (673)
.++||++|+|++||++++.++..|+|. || .++++++.+|++ ++ +.|++ |..||||.+..+.
T Consensus 355 TyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I------~a-lfGid----casGDTftd~~~~ 423 (721)
T KOG0465|consen 355 TYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDI------CA-LFGID----CASGDTFTDKQNL 423 (721)
T ss_pred EEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccce------ee-eeccc----cccCceeccCccc
Confidence 999999999999999999999999987 45 678999999999 88 99983 3369999876421
Q ss_pred hhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEe
Q psy4665 420 LDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRL 491 (673)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i 491 (673)
. + +.. ......+.+.+-||..+--..++..++|..+..+.-.+
T Consensus 424 ~-----~----------~m~--------------si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtF 466 (721)
T KOG0465|consen 424 A-----L----------SME--------------SIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTF 466 (721)
T ss_pred c-----c----------eee--------------eeecCCCeeEEEecccccccHHHHHHHHHhhcccCCce
Confidence 0 0 000 01123456777777777777777777777776644333
No 33
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.9e-29 Score=276.55 Aligned_cols=261 Identities=28% Similarity=0.303 Sum_probs=195.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------c----------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------S----------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~----------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
+...+|+++||+|||||||+++|.+. . ...+..+|+|++.....+.. ++.+++|+|||||.+|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch
Confidence 45678999999999999999999632 1 12334589999988777766 5779999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHHHHHcCcccccc-CCc
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNMLLAQGITVEDL-GGD 252 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~-~~~ 252 (673)
...+..++..+|++++|+|+.+|...|+.+++..+...++| +|+++||||+.+.. .+.+..++.+.... ..+ ...
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~-~~~~~~~ 216 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF-YKFPGDE 216 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH-hCCCCCc
Confidence 98888888899999999999999999999999999999999 57899999997421 11122222221100 011 234
Q ss_pred eeEEEeeccCC---CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCC
Q psy4665 253 IQAVPISALTG---TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329 (673)
Q Consensus 253 ~~~v~iSA~~g---~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~ 329 (673)
++++++||.++ .|.. ....++..|+++|....+ .+..+.+.
T Consensus 217 vpiip~Sa~sa~~g~n~~----------------------------------~~~~~i~~Ll~~l~~~lp--~p~r~~~~ 260 (447)
T PLN03127 217 IPIIRGSALSALQGTNDE----------------------------------IGKNAILKLMDAVDEYIP--EPVRVLDK 260 (447)
T ss_pred ceEEEeccceeecCCCcc----------------------------------cccchHHHHHHHHHHhCC--CCCccccc
Confidence 78888887643 2210 011246678888776532 23445568
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeC------CcceEEEEec--ccccceeccCccccccCcEEE-eee
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAG------QAWAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLG 400 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g------~~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~g 400 (673)
|++..|.+++..++.|++++++|.+|++++||.++.. ....+|++|+ +.++++|.|||. |++ +.+
T Consensus 261 pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~------v~l~L~~ 334 (447)
T PLN03127 261 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDN------VGLLLRG 334 (447)
T ss_pred ceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCE------EEEEeCC
Confidence 9999999999999999999999999999999999643 2357889987 888999999999 884 334
Q ss_pred CCCCCCCCCCCeEeecCC
Q psy4665 401 FKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 401 l~~~~~~~~Gd~l~~~~~ 418 (673)
++. ..+++||+++...+
T Consensus 335 i~~-~~i~rG~Vl~~~~~ 351 (447)
T PLN03127 335 LKR-EDVQRGQVICKPGS 351 (447)
T ss_pred CCH-HHCCCccEEecCCC
Confidence 332 45778999998643
No 34
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=1.5e-29 Score=275.52 Aligned_cols=262 Identities=27% Similarity=0.280 Sum_probs=193.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC----------------ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT----------------SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~----------------~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
+...+|+++||+|||||||+++|++. ....+..+|+|.+.....+.. ++.+++|||||||++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 45678999999999999999999742 012233589999987666654 5678999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCCCCCc--HHHHHHHHHHcCccccccCCce
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
...+.+++..+|++++|+|+.+|...|+.+++..+...++|.+ +++||||+.+.. .+...+++..........+..+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDT 168 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 9888889999999999999999999999999999999999965 689999997532 1111222222211110001237
Q ss_pred eEEEeeccCCCC-hhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 254 QAVPISALTGTN-VDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 254 ~~v~iSA~~g~g-v~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
+++++||++|.+ ..++ + .++.+|+++|....+ .+..+.+.|++
T Consensus 169 ~ii~vSa~~g~~g~~~~--------------------------------~--~~~~~ll~~l~~~~~--~~~~~~~~p~r 212 (394)
T TIGR00485 169 PIIRGSALKALEGDAEW--------------------------------E--AKILELMDAVDEYIP--TPERETDKPFL 212 (394)
T ss_pred cEEECccccccccCCch--------------------------------h--HhHHHHHHHHHhcCC--CCCCCCCCCeE
Confidence 889889888753 1111 1 134566776654321 23344568999
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC----cceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ----AWAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINP 405 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~----~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~ 405 (673)
+.|++++.+++.|++++++|.+|++++||.++..+ ...+|++|+ +.++++|.|||. |++ +.+++. .
T Consensus 213 ~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~------v~l~l~~i~~-~ 285 (394)
T TIGR00485 213 MPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDN------VGLLLRGIKR-E 285 (394)
T ss_pred EEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCE------EEEEeCCccH-H
Confidence 99999999999999999999999999999997543 346789987 888999999999 873 334432 3
Q ss_pred CCCCCCeEeecCC
Q psy4665 406 FCPSGDVDGSVEA 418 (673)
Q Consensus 406 ~~~~Gd~l~~~~~ 418 (673)
.+++||+++..++
T Consensus 286 ~i~rG~vl~~~~~ 298 (394)
T TIGR00485 286 EIERGMVLAKPGS 298 (394)
T ss_pred HCCccEEEecCCC
Confidence 4668999998644
No 35
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=1.3e-29 Score=279.13 Aligned_cols=265 Identities=31% Similarity=0.376 Sum_probs=201.7
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc--c-----------------------------ccccccceeeeEEEEEEEec
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS--V-----------------------------VKSEFGGITQHIGAFVVTLK 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~--~-----------------------------~~~~~~g~T~~~~~~~v~~~ 160 (673)
++...+|+++||+|+|||||+++|+... . .....+|+|.+.....+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 3456889999999999999999997521 1 1123568999998888877
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC---ChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHHHH-
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG---VMEQTVESIRMAREAKV-PIIVAINKIDKPAADIERT- 235 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g---~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~~~- 235 (673)
++..++|||||||++|...+..++..+|++++|+|++++ ...++.+++..+...+. |+++++||+|+.+.+.++.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 678999999999999988888888999999999999998 77788888877777775 5889999999976443322
Q ss_pred --HHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchh
Q psy4665 236 --KNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 310 (673)
Q Consensus 236 --~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~L 310 (673)
.+++... +..++ ..++++++||++|.|++++.. ..+|++| ..|
T Consensus 163 ~~~~ei~~~---~~~~g~~~~~~~~i~iSA~~g~ni~~~~~--------------------------~~~w~~g---~~l 210 (426)
T TIGR00483 163 AIKKEVSNL---IKKVGYNPDTVPFIPISAWNGDNVIKKSE--------------------------NTPWYKG---KTL 210 (426)
T ss_pred HHHHHHHHH---HHHcCCCcccceEEEeecccccccccccc--------------------------CCccccc---hHH
Confidence 2222221 11111 246899999999999987643 1235554 357
Q ss_pred HHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccC
Q psy4665 311 TEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALG 386 (673)
Q Consensus 311 l~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G 386 (673)
+++|... ..+....+.|++..|.+++..++.|+++.|+|.+|+++.||.+++++. ..+|++|+ +.++++|.||
T Consensus 211 ~~~l~~~---~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG 287 (426)
T TIGR00483 211 LEALDAL---EPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPG 287 (426)
T ss_pred HHHHhcC---CCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCC
Confidence 7777542 222334568999999999999999999999999999999999987664 57899988 8899999999
Q ss_pred ccccccCcEEEee-eCCCCCCCCCCCeEeecCCh
Q psy4665 387 TVQRTSGTVKISL-GFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 387 ~~~~~~g~v~~i~-gl~~~~~~~~Gd~l~~~~~~ 419 (673)
+. |++.+ +++ ...+++||+++..+++
T Consensus 288 ~~------v~i~l~~i~-~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 288 DN------IGFNVRGVS-KKDIRRGDVCGHPDNP 314 (426)
T ss_pred CE------EEEEECCCC-hhhcccceEEecCCCC
Confidence 99 88422 322 2446789999987553
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=2.6e-29 Score=276.75 Aligned_cols=271 Identities=27% Similarity=0.291 Sum_probs=202.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc----------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~ 175 (673)
.+...+|+++||+|+|||||+++|++.. ...+..+|+|.+.....+.+ ++.+++|+|||||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 3456789999999999999999998521 12344589999888777776 678999999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHHHHHcCccccc--c-
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNMLLAQGITVED--L- 249 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~--~- 249 (673)
|...+..++..+|++++|+|+.+|...|+.+++..+...++| +|+++||||+.+.. .+.+.+++... +.. |
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~---l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVREL---LSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHH---HHhcCCC
Confidence 999989899999999999999999999999999999999999 77899999997521 12222222222 111 1
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCC
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~ 329 (673)
..+++++++||.+|.++-.-...+ ..+ ..+|+. ++..|+++|....+ .+..+.+.
T Consensus 234 ~~~~~~vp~Sa~~g~n~~~~~~~~--------~~g-------------~~~wy~--~i~~Ll~~l~~~~~--~p~r~~~~ 288 (478)
T PLN03126 234 GDDIPIISGSALLALEALMENPNI--------KRG-------------DNKWVD--KIYELMDAVDSYIP--IPQRQTDL 288 (478)
T ss_pred cCcceEEEEEcccccccccccccc--------ccC-------------CCchhh--hHHHHHHHHHHhCC--CCCCcccc
Confidence 136899999999987652100000 000 112222 35678887775421 12334578
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc----ceEEEEec--ccccceeccCccccccCcEEE-eeeCC
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----WAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFK 402 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~ 402 (673)
|++..|.+++..++.|+++.|+|.+|++++||.+++++. ..+|++|+ +.++++|.||+. |++ +.+++
T Consensus 289 p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~------v~l~L~~i~ 362 (478)
T PLN03126 289 PFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDN------VGLLLRGIQ 362 (478)
T ss_pred ceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCce------eeeeccCCc
Confidence 999999999999999999999999999999999987653 36789888 889999999999 774 23433
Q ss_pred CCCCCCCCCeEeecCC
Q psy4665 403 INPFCPSGDVDGSVEA 418 (673)
Q Consensus 403 ~~~~~~~Gd~l~~~~~ 418 (673)
. ..+++|++++..++
T Consensus 363 ~-~di~rG~VL~~~~~ 377 (478)
T PLN03126 363 K-ADIQRGMVLAKPGS 377 (478)
T ss_pred H-HHcCCccEEecCCC
Confidence 2 34668999998754
No 37
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=3.3e-29 Score=272.43 Aligned_cols=265 Identities=28% Similarity=0.270 Sum_probs=199.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc----------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
+...+|+++||+|||||||+++|++.. ...+..+|+|.+.....+.. ++.+++|+|||||.+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHH
Confidence 445789999999999999999998631 11233689999987766655 6778999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCCCCCc--HHHHHHHHHHcCccccccCCce
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
...+..++..+|++++|+|+.+|...|+.+++..+...++|.+ +++||+|+.+.. .+.....+......+......+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 9888889999999999999999999999999999999999976 689999997421 1112222222211110012357
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEE
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEA 333 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~ 333 (673)
+++++||++|.+... ..+|+ .|+..|+++|....+ .+....+.|++.
T Consensus 169 ~iv~iSa~~g~~~~~-----------------------------~~~w~--~~~~~ll~~l~~~~~--~p~~~~~~p~r~ 215 (396)
T PRK00049 169 PIIRGSALKALEGDD-----------------------------DEEWE--KKILELMDAVDSYIP--TPERAIDKPFLM 215 (396)
T ss_pred cEEEeecccccCCCC-----------------------------ccccc--ccHHHHHHHHHhcCC--CCCCCCCCCeEE
Confidence 899999998865211 11222 356788888876532 233445789999
Q ss_pred EEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC----cceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCCC
Q psy4665 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ----AWAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINPF 406 (673)
Q Consensus 334 ~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~----~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~~ 406 (673)
.|.+++..++.|++++++|.+|++++||.++..+ ...+|++|. +.++++|.|||. |++ +.+++. ..
T Consensus 216 ~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~------v~l~l~~i~~-~~ 288 (396)
T PRK00049 216 PIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDN------VGALLRGIKR-ED 288 (396)
T ss_pred EEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCE------EEEEeCCCCH-HH
Confidence 9999999999999999999999999999996542 457899987 889999999999 773 234332 34
Q ss_pred CCCCCeEeecCC
Q psy4665 407 CPSGDVDGSVEA 418 (673)
Q Consensus 407 ~~~Gd~l~~~~~ 418 (673)
+++|++++..++
T Consensus 289 i~~G~vl~~~~~ 300 (396)
T PRK00049 289 VERGQVLAKPGS 300 (396)
T ss_pred CCcceEEecCCC
Confidence 668999998654
No 38
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=6.1e-29 Score=281.98 Aligned_cols=248 Identities=25% Similarity=0.342 Sum_probs=188.1
Q ss_pred EEEEEeCCCCChhHHHHHHhcC---ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~---~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.|+++||+|||||||+++|++. .+..+..+|+|++.+...+..+++..++|||||||++|...+..++..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 6899999999999999999864 3445556899999887777666677899999999999998888899999999999
Q ss_pred EECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc-HHHHHHHHHHcCccccccC-CceeEEEeeccCCCChhhHH
Q psy4665 194 VAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD-IERTKNMLLAQGITVEDLG-GDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 194 vda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~-~~~~~v~iSA~~g~gv~~l~ 270 (673)
+|+++|+.+|+.+++..+...++| +++|+||+|+.+.+ .+...+.+.+. +...+ ...+++++||+
T Consensus 82 Vda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~---l~~~~~~~~~ii~VSA~--------- 149 (614)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV---LREYGFAEAKLFVTAAT--------- 149 (614)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH---HHhcCCCCCcEEEEeCC---------
Confidence 999999999999999999989998 57999999997422 22222222221 01111 12455655555
Q ss_pred HHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEE
Q psy4665 271 EAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATA 350 (673)
Q Consensus 271 ~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~ 350 (673)
+|.|+++|++.|..... .....+.|++..|.+++..++.|++++|
T Consensus 150 --------------------------------tG~gI~~L~~~L~~~~~---~~~~~~~~~rl~Id~vf~v~G~GtVvtG 194 (614)
T PRK10512 150 --------------------------------EGRGIDALREHLLQLPE---REHAAQHRFRLAIDRAFTVKGAGLVVTG 194 (614)
T ss_pred --------------------------------CCCCCHHHHHHHHHhhc---cccCcCCCceEEEEEEeccCCCeEEEEE
Confidence 45555555555543321 1122467899999999999999999999
Q ss_pred EeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEee-e-CCCCCCCCCCCeEeecCC
Q psy4665 351 LVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISL-G-FKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 351 ~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~-g-l~~~~~~~~Gd~l~~~~~ 418 (673)
+|.+|++++||.+.+.+. ..+||+|+ ++++++|.||+. |++.+ | ++ ...+++||+++....
T Consensus 195 tv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~r------val~l~g~~~-~~~i~rGdvl~~~~~ 261 (614)
T PRK10512 195 TALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQR------IALNIAGDAE-KEQINRGDWLLADAP 261 (614)
T ss_pred EEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCe------EEEEecCCCC-hhhCCCcCEEeCCCC
Confidence 999999999999976543 57899988 889999999999 87432 3 22 235679999997643
No 39
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=2.2e-28 Score=283.93 Aligned_cols=342 Identities=25% Similarity=0.306 Sum_probs=241.5
Q ss_pred EeCCCCChhHHHHHHhcCcc------------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhh
Q psy4665 121 MGHVDHGKTTLLDTLRNTSV------------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSR 182 (673)
Q Consensus 121 vG~~n~GKSTLl~~L~~~~~------------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~ 182 (673)
+||+|+|||||+++|+.... .....+++|.......+.+ ++..++|||||||.+|...+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHHHHHHH
Confidence 69999999999999954321 1122478888888888888 7889999999999999988888
Q ss_pred ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc--cc--------cCC
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV--ED--------LGG 251 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~--~~--------~~~ 251 (673)
++..+|++++|+|++.+...++...|..+...++|+++++||+|+...+..+..+.+.+. +... .. +.+
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~ 159 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTG 159 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceE
Confidence 999999999999999999999999999999999999999999999887777766666653 2110 00 000
Q ss_pred ceeEEEeec---cCCCC-----------------hhhHHHHHHHHH----HHHHhC-CCCccccc----------CCcee
Q psy4665 252 DIQAVPISA---LTGTN-----------------VDNLTEAIERTK----NMLLAQ-GITVEDLG----------GDIQA 296 (673)
Q Consensus 252 ~~~~v~iSA---~~g~g-----------------v~~l~~~i~~~~----~~~~~~-~~~~ee~~----------~~~~v 296 (673)
.+..+...+ ..+.. ...+++.+.+.. +.++++ .++.+++. ..+|+
T Consensus 160 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv 239 (668)
T PRK12740 160 VVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPV 239 (668)
T ss_pred EEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 000000000 00000 112333333322 233332 23333322 34578
Q ss_pred eeeccccCCCcchhHHHHHHHHHhhh---------------cccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCC
Q psy4665 297 VPISALTGTNVDNLTEAIVAQAEIMH---------------LKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGA 361 (673)
Q Consensus 297 ~~~Sa~~g~gl~~Ll~~i~~~~~~~~---------------~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~ 361 (673)
+++||.+|.|+..||++|..+.+.+. ...++++|+.++|++++.+++.|+++++||++|+|++||
T Consensus 240 ~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~ 319 (668)
T PRK12740 240 FCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGD 319 (668)
T ss_pred EeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCC
Confidence 99999999999999999998865432 123567889999999999999999999999999999999
Q ss_pred EEEeCCcce-----EEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHh
Q psy4665 362 IVVAGQAWA-----KVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRL 433 (673)
Q Consensus 362 ~v~~g~~~~-----kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~ 433 (673)
.++++.... ++..++ ..+++++.||++ ++ +.|++.+ ..||||+..+... . +.
T Consensus 320 ~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI------~~-i~gl~~~---~~Gdtl~~~~~~~-~-------~~-- 379 (668)
T PRK12740 320 TLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDI------VA-VAKLKDA---ATGDTLCDKGDPI-L-------LE-- 379 (668)
T ss_pred EEEeCCCCCcEEecceeeecCCCccccCccCCCCE------EE-EeccCcc---CCCCEEeCCCCcc-c-------cC--
Confidence 998776432 233344 578999999999 88 7788754 4699998654210 0 00
Q ss_pred hhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeE---------EeeecCCCCh
Q psy4665 434 DIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDI---------VHYGVGQVSA 503 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~i---------v~~~vG~it~ 503 (673)
......+.+.+.|.+...+..+.|.++|.++......+.| +-.+.|.+.-
T Consensus 380 --------------------~~~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhL 438 (668)
T PRK12740 380 --------------------PMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHL 438 (668)
T ss_pred --------------------CCCCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHH
Confidence 0011256788888898888899999999888775555544 3356666553
No 40
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.3e-28 Score=278.56 Aligned_cols=251 Identities=25% Similarity=0.315 Sum_probs=190.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC---ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~---~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+|+++||+|||||||+++|++. .+.....+|+|++++...+.+ ++..++|||||||++|...+..++..+|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 37999999999999999999973 344455689999998888877 45899999999999999998889999999999
Q ss_pred EEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 193 VVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
|+|+++|.++|+.+++..+...++| +++|+||+|+.+.+. +...+.+.+.... ..+...++++++||++|.|+++++
T Consensus 80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~-~~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS-YIFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH-hCCCCCCcEEEEeCCCCCCchhHH
Confidence 9999999999999999999999999 999999999975331 1222222221000 001113567777776666666665
Q ss_pred HHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEE
Q psy4665 271 EAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATA 350 (673)
Q Consensus 271 ~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~ 350 (673)
+.+.. +.+..... ..+.|++..|.+++..++.|++++|
T Consensus 159 ~~L~~-----------------------------------------l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 159 KELKN-----------------------------------------LLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred HHHHH-----------------------------------------HHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 54432 22111111 2467899999999999999999999
Q ss_pred EeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEee-eCCCCCCCCCCCeEeecC
Q psy4665 351 LVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISL-GFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 351 ~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~-gl~~~~~~~~Gd~l~~~~ 417 (673)
+|.+|++++||.+.+.+. ..+||+|+ ++++++|.||+. |++.+ |++ ...+.+|.+++...
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~r------val~L~~i~-~~~i~rG~~~~~~~ 261 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQR------IALNLMDVE-PESLKRGLLILTPE 261 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCE------EEEEeCCCC-HHHcCCceEEcCCC
Confidence 999999999999988764 57899988 889999999999 88422 332 22356896665443
No 41
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=2.8e-29 Score=273.85 Aligned_cols=265 Identities=24% Similarity=0.290 Sum_probs=194.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcc---------------------------------ccccccceeeeEEEEEEEecCCe
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSV---------------------------------VKSEFGGITQHIGAFVVTLKSGE 163 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~---------------------------------~~~~~~g~T~~~~~~~v~~~~~~ 163 (673)
+|+++||+|+|||||+++|+...- ..+..+|+|.+.....+.+ ++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CCe
Confidence 699999999999999999963210 1122478899998888877 678
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHHHHHHHHHc
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNMLLAQ 242 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~~~~~l~~~ 242 (673)
+++|+|||||++|...+..++..+|++++|+|+..|..+|+.+++..+...++| +++++||||+.+++.+.+.+...+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 999999999999998888899999999999999999999999999999988886 7889999999765543322222221
Q ss_pred CccccccC-CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhh
Q psy4665 243 GITVEDLG-GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIM 321 (673)
Q Consensus 243 ~~~~~~~~-~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~ 321 (673)
...+..++ ..++++++||++|.|++++.+ ..+|++|.. |+++|....
T Consensus 161 ~~~~~~~~~~~~~iipiSA~~g~ni~~~~~--------------------------~~~wy~g~t---L~~~L~~~~--- 208 (406)
T TIGR02034 161 LAFAEQLGFRDVTFIPLSALKGDNVVSRSE--------------------------SMPWYSGPT---LLEILETVE--- 208 (406)
T ss_pred HHHHHHcCCCCccEEEeecccCCCCccccc--------------------------CCCccchhH---HHHHHHhcC---
Confidence 11111111 246899999999999876432 234555543 555554321
Q ss_pred hcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC--cceEEEEec--ccccceeccCccccccCcEEE
Q psy4665 322 HLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ--AWAKVRSIS--RKTLINTALGTVQRTSGTVKI 397 (673)
Q Consensus 322 ~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~--~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~ 397 (673)
.+....+.|++..|.+++...+.+.-..|+|.+|++++||.+.+.+ ..++|++|+ +.++++|.||+. |++
T Consensus 209 ~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~------v~l 282 (406)
T TIGR02034 209 VERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQA------VTL 282 (406)
T ss_pred CCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCE------EEE
Confidence 1223456788888877765433333367999999999999998755 357889987 788999999999 884
Q ss_pred eeeCCCCCCCCCCCeEeecCChhhH
Q psy4665 398 SLGFKINPFCPSGDVDGSVEALLDV 422 (673)
Q Consensus 398 i~gl~~~~~~~~Gd~l~~~~~~~~~ 422 (673)
. +++...+.+||+++..+++...
T Consensus 283 ~--l~~~~~i~rG~vl~~~~~~~~~ 305 (406)
T TIGR02034 283 T--LDDEIDISRGDLLAAADSAPEV 305 (406)
T ss_pred E--ECCccccCCccEEEcCCCCCCc
Confidence 3 3344556799999987664333
No 42
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.2e-28 Score=251.33 Aligned_cols=295 Identities=24% Similarity=0.306 Sum_probs=214.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc----------------c------ccccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS----------------V------VKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------~------~~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.+.++.+|+-||++|||||.+.|+--. . .....+||++..+.-++.+ .++.++|+||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 466899999999999999999985311 1 1123579998888888888 7899999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Ccccc--
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVE-- 247 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~-- 247 (673)
|||++|+....|.+..+|.+|+|+|+..|+.+||+++++.++..++|++-++||+|+...++-+...++.+. ++...
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 999999999999999999999999999999999999999999999999999999999988877766665543 22211
Q ss_pred --------ccCC------ceeEEEeeccC----------CCCh--------hhHHHHHHHHHHHHHhCC--CCccccc--
Q psy4665 248 --------DLGG------DIQAVPISALT----------GTNV--------DNLTEAIERTKNMLLAQG--ITVEDLG-- 291 (673)
Q Consensus 248 --------~~~~------~~~~v~iSA~~----------g~gv--------~~l~~~i~~~~~~~~~~~--~~~ee~~-- 291 (673)
.|.+ +.-....+... +-.. +++.+.+.+-.+-..+.+ ++.+...
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 1111 10111111111 1111 122222222222222222 3334332
Q ss_pred CCceeeeeccccCCCcchhHHHHHHHHHhhhcccC-------CCCCeEEEEEEEEee---cCCcEEEEEEeeecEEeeCC
Q psy4665 292 GDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKAD-------YGGPVEAMIVESKFD---THRGKLATALVQRGTLKKGA 361 (673)
Q Consensus 292 ~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~-------~~~~~~~~V~e~~~~---~~~G~v~~~~V~~G~Lk~g~ 361 (673)
..-|+|.+||+++.|++.+|+++..+++.+..... .+..|.|+||++... +++-+++++||+||.+..|+
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCc
Confidence 23479999999999999999999999864432221 234599999999765 57889999999999999999
Q ss_pred EEEeCCcceEEEE------ec--ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCC
Q psy4665 362 IVVAGQAWAKVRS------IS--RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 362 ~v~~g~~~~kvr~------i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
.+.-.+++..++. |. ++.+++|.|||+ |+ +-+..+++.||||+..+.
T Consensus 329 kv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDI------IG----l~nhG~~~IGDT~t~Ge~ 383 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDI------IG----LHNHGTIQIGDTFTEGEK 383 (528)
T ss_pred eeeeeecCCceEecchHhhhhhhhhhhhhccCCCe------Ee----ccCCCceeecceeecCce
Confidence 9977666666654 11 778999999999 66 455666778999987654
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=1.6e-28 Score=271.89 Aligned_cols=266 Identities=23% Similarity=0.240 Sum_probs=195.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc---------------------------------ccccccceeeeEEEEEEEe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV---------------------------------VKSEFGGITQHIGAFVVTL 159 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~---------------------------------~~~~~~g~T~~~~~~~v~~ 159 (673)
....+|+++||+|+|||||+++|+...- ..+..+|+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4568999999999999999999965321 0112468888888777776
Q ss_pred cCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHHHHHHH
Q psy4665 160 KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV-PIIVAINKIDKPAADIERTKNM 238 (673)
Q Consensus 160 ~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~~~~~~ 238 (673)
++.+++|+|||||++|...+..++..+|++++|+|+.+|+..|+.+++..+...++ |+|+++||||+.+.+.+...+.
T Consensus 105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i 183 (474)
T PRK05124 105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERI 183 (474)
T ss_pred -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHH
Confidence 67799999999999998888888999999999999999999999999999888886 5889999999976544332222
Q ss_pred HHHcCcccccc--CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 239 LLAQGITVEDL--GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 239 l~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
..+....+..+ ....+++++||++|.|++++.+ ..+|++|. .|++.|..
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~--------------------------~~~wy~G~---tLl~~L~~ 234 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSE--------------------------SMPWYSGP---TLLEVLET 234 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccccc--------------------------cccccchh---hHHHHHhh
Confidence 22111111111 1257899999999999986532 23456554 45554443
Q ss_pred HHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCcccccc
Q psy4665 317 QAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTS 392 (673)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~ 392 (673)
.. ......+.|++..|..++...+..+-..|+|.+|++++||.+++++. ..+|++|+ +.++++|.||+.
T Consensus 235 i~---~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~---- 307 (474)
T PRK05124 235 VD---IQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEA---- 307 (474)
T ss_pred cC---CCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCE----
Confidence 21 12334567899988887654332222569999999999999987775 46888887 778999999999
Q ss_pred CcEEEeeeCCCCCCCCCCCeEeecCCh
Q psy4665 393 GTVKISLGFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 393 g~v~~i~gl~~~~~~~~Gd~l~~~~~~ 419 (673)
|++ .+++...+++||+|+..++.
T Consensus 308 --V~l--~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 308 --ITL--VLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred --EEE--EeCCccccCCccEEECCCCC
Confidence 883 33444557799999987654
No 44
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=5e-28 Score=264.68 Aligned_cols=258 Identities=24% Similarity=0.298 Sum_probs=185.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEE---------------ecC--------------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVT---------------LKS-------------- 161 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~---------------~~~-------------- 161 (673)
...+|+++||++||||||+.+|++.. ...+..+|+|.+.+..... ++.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 34689999999999999999999754 3445567888877655331 111
Q ss_pred ---CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-ChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc-HHHH
Q psy4665 162 ---GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-VMEQTVESIRMAREAKVP-IIVAINKIDKPAAD-IERT 235 (673)
Q Consensus 162 ---~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~-~~~~ 235 (673)
...++|+|||||++|...+..++..+|++++|+|++++ .++|+.+++..+...++| +|+|+||+|+.+.+ ..+.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 23789999999999999988899999999999999996 799999999998888886 78999999997422 1122
Q ss_pred HHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 236 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
.+.+.+... ..+....+++ ++||++|.|++.|++.|.
T Consensus 193 ~~ei~~~l~--~~~~~~~~ii-----------------------------------------pVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 193 YEEIRNFVK--GTIADNAPII-----------------------------------------PISAQLKYNIDVVLEYIC 229 (460)
T ss_pred HHHHHHHHH--hhccCCCeEE-----------------------------------------EeeCCCCCCHHHHHHHHH
Confidence 222222100 0011233444 556666666666666665
Q ss_pred HHHHhhhcccCCCCCeEEEEEEEEeecC--------CcEEEEEEeeecEEeeCCEEEeCCc---------------ceEE
Q psy4665 316 AQAEIMHLKADYGGPVEAMIVESKFDTH--------RGKLATALVQRGTLKKGAIVVAGQA---------------WAKV 372 (673)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~G~Lk~g~~v~~g~~---------------~~kv 372 (673)
... +....+.+.|++..|.+++...+ .|++++++|.+|++++||.+..++. .++|
T Consensus 230 ~~l--p~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V 307 (460)
T PTZ00327 230 TQI--PIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRI 307 (460)
T ss_pred hhC--CCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEE
Confidence 422 12233456789999998876543 7999999999999999999987763 3589
Q ss_pred EEec--ccccceeccCccccccCcEEEeeeCC-C--CCCCCCCCeEeecCChhhH
Q psy4665 373 RSIS--RKTLINTALGTVQRTSGTVKISLGFK-I--NPFCPSGDVDGSVEALLDV 422 (673)
Q Consensus 373 r~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~-~--~~~~~~Gd~l~~~~~~~~~ 422 (673)
++|+ +.++++|.||+. |++.++++ + ...+.+|++++...+.+.+
T Consensus 308 ksI~~~~~~v~~a~aG~~------vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~ 356 (460)
T PTZ00327 308 VSLFAENNELQYAVPGGL------IGVGTTIDPTLTRADRLVGQVLGYPGKLPEV 356 (460)
T ss_pred EEEEECCeECCEEcCCCE------EEEEeccCCCcchhhcccccEEEcCCCCCce
Confidence 9988 889999999999 88544432 1 1335689999987654433
No 45
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.96 E-value=3.5e-27 Score=274.87 Aligned_cols=321 Identities=24% Similarity=0.315 Sum_probs=206.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc----------------ccccccceeeeEEEEEEEe--c-CCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV----------------VKSEFGGITQHIGAFVVTL--K-SGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~----------------~~~~~~g~T~~~~~~~v~~--~-~~~~i~liDTpG~ 173 (673)
.+.++|+++||++||||||+++|+...- .....+++|+......+.| . ++..++|+|||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4678999999999999999999975321 1122467887776655544 2 3578999999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH----HHHHHHHHH----cCcc
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI----ERTKNMLLA----QGIT 245 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~----~~~~~~l~~----~~~~ 245 (673)
.+|...+.++++.+|++++|+|+..|+..++..+|+.+...++|.|+++||+|+..++. +...+.+.. ....
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~ 177 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKL 177 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999875432 222221111 0000
Q ss_pred c-----ccc-------CCceeEEEeeccCCCChhhHHHHHHH-------HHHHHHhCCCCcccccCCceeeeeccccCCC
Q psy4665 246 V-----EDL-------GGDIQAVPISALTGTNVDNLTEAIER-------TKNMLLAQGITVEDLGGDIQAVPISALTGTN 306 (673)
Q Consensus 246 ~-----~~~-------~~~~~~v~iSA~~g~gv~~l~~~i~~-------~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~g 306 (673)
+ ..+ .....+++.||. .++....+.+.+ ..+.+. ++ ..+++.+.+|+
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~v~~~sa~--~~~~~~~~~~~~~~~~~~~l~e~~~-~~-~~~~l~~~~Pv---------- 243 (731)
T PRK07560 178 IKGMAPEEFKEKWKVDVEDGTVAFGSAL--YNWAISVPMMQKTGIKFKDIIDYYE-KG-KQKELAEKAPL---------- 243 (731)
T ss_pred HHHhhhhhhhcceeecCCCCcEeeeecc--cccceeHHHHHHhCCCHHHHHHHHh-cC-CHHHHHhhccc----------
Confidence 0 000 000112222221 111111111100 001110 00 11111111111
Q ss_pred cchhHHHHHHHHHhhh-----------------------cccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEE
Q psy4665 307 VDNLTEAIVAQAEIMH-----------------------LKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363 (673)
Q Consensus 307 l~~Ll~~i~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v 363 (673)
+..||++|..+.+.+. ..+++++|+.++||++..+++.|+++++||++|+|++||.|
T Consensus 244 ~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v 323 (731)
T PRK07560 244 HEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEV 323 (731)
T ss_pred hhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEE
Confidence 1378898888754332 11245678999999999999999999999999999999999
Q ss_pred EeCCc--ceEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhh
Q psy4665 364 VAGQA--WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDI 435 (673)
Q Consensus 364 ~~g~~--~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~ 435 (673)
++... ..+++.++ ..+++++.||++ ++ +.|+++.. .||||+........ ..
T Consensus 324 ~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdI------v~-i~gl~~~~---~GdtL~~~~~~~~~----~~------- 382 (731)
T PRK07560 324 YLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNI------AA-VTGLKDAR---AGETVVSVEDMTPF----ES------- 382 (731)
T ss_pred EEcCCCCceEeheehhhhcCCCceeeeECCCCE------EE-EEcccccc---cCCEEeCCCccccc----cc-------
Confidence 76543 34565654 457999999999 88 78887544 69999865421100 00
Q ss_pred hhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCC
Q psy4665 436 VHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTS 486 (673)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~ 486 (673)
......+.+.+-|.+...+..+.|.++|.++..
T Consensus 383 ------------------~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~ 415 (731)
T PRK07560 383 ------------------LKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAK 415 (731)
T ss_pred ------------------cccCCCCeEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 000123566666666666666666666666654
No 46
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.8e-28 Score=242.90 Aligned_cols=279 Identities=24% Similarity=0.297 Sum_probs=214.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc---------------------------------ccccccceeeeEEEEEEEe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV---------------------------------VKSEFGGITQHIGAFVVTL 159 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~---------------------------------~~~~~~g~T~~~~~~~v~~ 159 (673)
+...++..+|+++.|||||+.+|++..- ..++..|||+++..+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3567899999999999999999976321 1122469999999888877
Q ss_pred cCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHHHHHH
Q psy4665 160 KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNM 238 (673)
Q Consensus 160 ~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~~~~~ 238 (673)
..+++.+.|||||+.|...+..+++.||++|++|||..|+.+||++|.-.+.-++++ +++++|||||.+.+.+.+.+.
T Consensus 84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999998 888999999999988777766
Q ss_pred HHHcCccccccC-CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 239 LLAQGITVEDLG-GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 239 l~~~~~~~~~~~-~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
..++......++ ....++|+||+.|.|+-.-.+ ...|++|..+-+.|+.+.-.
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~--------------------------~mpWY~GptLLe~LE~v~i~ 216 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVVSKSE--------------------------NMPWYKGPTLLEILETVEIA 216 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCccccccc--------------------------CCCcccCccHHHHHhhcccc
Confidence 655533333333 245899999999999843211 34577787666666554321
Q ss_pred HHhhhcccCCCCCeEEEEEEEEe--ecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec--ccccceeccCccccc
Q psy4665 318 AEIMHLKADYGGPVEAMIVESKF--DTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS--RKTLINTALGTVQRT 391 (673)
Q Consensus 318 ~~~~~~~~~~~~~~~~~V~e~~~--~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~--~~~v~~a~~G~~~~~ 391 (673)
......|++..|-.+.. ..++|. .+++.+|++++||.++.-+++ .+|+.+. .-++++|.||+.
T Consensus 217 ------~~~~~~~~RfPVQ~V~Rp~~dfRGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~a--- 285 (431)
T COG2895 217 ------DDRSAKAFRFPVQYVNRPNLDFRGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEA--- 285 (431)
T ss_pred ------ccccccceeeceEEecCCCCccccc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCce---
Confidence 12234567777666543 235553 478999999999998766553 6777766 667999999999
Q ss_pred cCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhh
Q psy4665 392 SGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLD 434 (673)
Q Consensus 392 ~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~ 434 (673)
|.++ |.+--.+.+||.|+..++.+.+.++|.+.+++++
T Consensus 286 ---Vtl~--L~deidisRGd~i~~~~~~~~~~~~f~A~vvWm~ 323 (431)
T COG2895 286 ---VTLV--LADEIDISRGDLIVAADAPPAVADAFDADVVWMD 323 (431)
T ss_pred ---EEEE--EcceeecccCcEEEccCCCcchhhhcceeEEEec
Confidence 8843 4444456699999999998888888888888775
No 47
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.95 E-value=1e-26 Score=273.94 Aligned_cols=343 Identities=18% Similarity=0.220 Sum_probs=229.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc----------------ccccccceeeeEEEEEEEec---------------C
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV----------------VKSEFGGITQHIGAFVVTLK---------------S 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~----------------~~~~~~g~T~~~~~~~v~~~---------------~ 161 (673)
.+.++|+|+||+|||||||+++|+...- .....+++|.......+.+. +
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4678999999999999999999975431 12234678877766666552 2
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC-------C----C
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP-------A----A 230 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~-------~----~ 230 (673)
+..++|+|||||.+|...+.++++.+|++++|+|+.+|+..||..+|+++...++|+++++||||+. . +
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~ 176 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999997 2 3
Q ss_pred cHHHHHHHHHHc----C-----c-cccccCCceeEEEeeccCC-------------------------------------
Q psy4665 231 DIERTKNMLLAQ----G-----I-TVEDLGGDIQAVPISALTG------------------------------------- 263 (673)
Q Consensus 231 ~~~~~~~~l~~~----~-----~-~~~~~~~~~~~v~iSA~~g------------------------------------- 263 (673)
+..++.+.++.. + . .+...++ .+++.|+..+
T Consensus 177 ~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~--nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 177 TFSRVIENANVIMATYEDPLLGDVQVYPEKG--TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHhccccccCceEEccCCC--eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 455555555411 0 0 0000001 1222222111
Q ss_pred ---------C-------------ChhhHHHHHHHH----HHHHHhC---CCCcccccCCc----------eeeeeccccC
Q psy4665 264 ---------T-------------NVDNLTEAIERT----KNMLLAQ---GITVEDLGGDI----------QAVPISALTG 304 (673)
Q Consensus 264 ---------~-------------gv~~l~~~i~~~----~~~~~~~---~~~~ee~~~~~----------~v~~~Sa~~g 304 (673)
. -+.++++.+.+. .+.++++ .++.+++.. + +++++
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~----- 328 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPA----- 328 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCC-----
Confidence 0 011122222222 3334433 355555543 2 24443
Q ss_pred CCcchhHHHHHHHHHhhh-----------------------cccCCCCCeEEEEEEEEeecCCcE-EEEEEeeecEEeeC
Q psy4665 305 TNVDNLTEAIVAQAEIMH-----------------------LKADYGGPVEAMIVESKFDTHRGK-LATALVQRGTLKKG 360 (673)
Q Consensus 305 ~gl~~Ll~~i~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~-v~~~~V~~G~Lk~g 360 (673)
...||+++..+.+.+. ..+++++|+.++||++..++..|. ++++||++|+|+.|
T Consensus 329 --s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g 406 (843)
T PLN00116 329 --SDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATG 406 (843)
T ss_pred --hHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCC
Confidence 3789999988754331 112345789999999999888887 99999999999999
Q ss_pred CEEE-eCC---cc-------eEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHH
Q psy4665 361 AIVV-AGQ---AW-------AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVF 423 (673)
Q Consensus 361 ~~v~-~g~---~~-------~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~ 423 (673)
+.|+ +|+ .. .++..++ ..+++++.||++ ++ +.|+++... .||||+...+....
T Consensus 407 ~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI------~a-i~gl~~~~~--~gdTL~~~~~~~~~- 476 (843)
T PLN00116 407 MKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNT------VA-MVGLDQFIT--KNATLTNEKEVDAH- 476 (843)
T ss_pred CEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCE------EE-EEeeccccc--CCceecCCcccCCc-
Confidence 9996 222 11 2333333 467999999999 88 899887544 59999755310000
Q ss_pred HHHHHHHHHhhhhhccccchhHHhhhcccCCCCCC-CceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeE--------E
Q psy4665 424 DTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRE-SKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDI--------V 494 (673)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~i--------v 494 (673)
.+. . .... .+.+.+.|.+...+..+.|.++|.++..+...+.+ +
T Consensus 477 -~l~----~----------------------~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~i 529 (843)
T PLN00116 477 -PIK----A----------------------MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHI 529 (843)
T ss_pred -ccc----c----------------------cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEE
Confidence 000 0 0011 46788888888888888888888888764444443 4
Q ss_pred eeecCCCC
Q psy4665 495 HYGVGQVS 502 (673)
Q Consensus 495 ~~~vG~it 502 (673)
-+|.|.+.
T Consensus 530 l~g~GElH 537 (843)
T PLN00116 530 IAGAGELH 537 (843)
T ss_pred EEEccHHH
Confidence 45666654
No 48
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=8.8e-27 Score=254.42 Aligned_cols=258 Identities=24% Similarity=0.285 Sum_probs=181.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc---ccccccceeeeEEEEEEEec-------------------------CCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAFVVTLK-------------------------SGEQV 165 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~---~~~~~~g~T~~~~~~~v~~~-------------------------~~~~i 165 (673)
...+|+++||+|||||||+++|.+... .....+++|.+.+...+.+. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 346899999999999999999976432 22335677777653332110 14679
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC-hHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHH-HHHHHHHHc
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKV-PIIVAINKIDKPAADIE-RTKNMLLAQ 242 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~-~~~~~l~~~ 242 (673)
+|||||||++|...+..++..+|++++|+|++++. ..|+.+++..+...++ |+++++||+|+.+.+.. ...+.+.+.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 99999999999999998999999999999999988 8899999998888876 58999999999753211 111222211
Q ss_pred CccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhh
Q psy4665 243 GITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMH 322 (673)
Q Consensus 243 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~ 322 (673)
.. ..+...++++++||++|. |+++|++.|....+ .
T Consensus 163 l~--~~~~~~~~ii~vSA~~g~-----------------------------------------gi~~L~e~L~~~l~--~ 197 (406)
T TIGR03680 163 VK--GTVAENAPIIPVSALHNA-----------------------------------------NIDALLEAIEKFIP--T 197 (406)
T ss_pred hh--hcccCCCeEEEEECCCCC-----------------------------------------ChHHHHHHHHHhCC--C
Confidence 00 001113455555555554 45555555543321 1
Q ss_pred cccCCCCCeEEEEEEEEeecC--------CcEEEEEEeeecEEeeCCEEEeCCcc--------------eEEEEec--cc
Q psy4665 323 LKADYGGPVEAMIVESKFDTH--------RGKLATALVQRGTLKKGAIVVAGQAW--------------AKVRSIS--RK 378 (673)
Q Consensus 323 ~~~~~~~~~~~~V~e~~~~~~--------~G~v~~~~V~~G~Lk~g~~v~~g~~~--------------~kvr~i~--~~ 378 (673)
+..+.+.|+...|.+++...+ +|+++.++|.+|++++||.+.+++.. .+|++|+ +.
T Consensus 198 ~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~ 277 (406)
T TIGR03680 198 PERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGY 277 (406)
T ss_pred CCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCE
Confidence 233456789999999986543 67899999999999999999887652 5799988 88
Q ss_pred ccceeccCccccccCcEEEeeeCC-C--CCCCCCCCeEeecCChhhH
Q psy4665 379 TLINTALGTVQRTSGTVKISLGFK-I--NPFCPSGDVDGSVEALLDV 422 (673)
Q Consensus 379 ~v~~a~~G~~~~~~g~v~~i~gl~-~--~~~~~~Gd~l~~~~~~~~~ 422 (673)
++++|.||+. |++.+.++ + ...+.+||+++..++.+.+
T Consensus 278 ~~~~a~~G~~------v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~ 318 (406)
T TIGR03680 278 KVEEARPGGL------VGVGTKLDPALTKADALAGQVVGKPGTLPPV 318 (406)
T ss_pred ECCEEcCCCE------EEEeeccCCCCCHHHcccccEEEcCCCCCCc
Confidence 9999999999 88544322 1 1335689999988665444
No 49
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=4.8e-27 Score=270.30 Aligned_cols=274 Identities=22% Similarity=0.254 Sum_probs=196.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc---------------------------------cccccceeeeEEEEEEEec
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV---------------------------------KSEFGGITQHIGAFVVTLK 160 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~---------------------------------~~~~~g~T~~~~~~~v~~~ 160 (673)
...+|+++||+|+|||||+++|+..... .+..+|+|.+.....+.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 3467999999999999999999753210 112367888888777777
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHHHHHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV-PIIVAINKIDKPAADIERTKNML 239 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~~~~~~l 239 (673)
++.+++|+|||||++|...+..++..+|++++|+|+..|..+|+.+++..+...++ |+|+++||+|+.+.+.+...+..
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 67789999999999998888888999999999999999999999999999988886 58889999999754433322222
Q ss_pred HHcCccccccC-CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHH
Q psy4665 240 LAQGITVEDLG-GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQA 318 (673)
Q Consensus 240 ~~~~~~~~~~~-~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~ 318 (673)
.+....+..++ ...+++++||++|.|+++..+ ..+|+.| ..|++.|....
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~--------------------------~~~wy~g---~tL~~~l~~~~ 232 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVTRSA--------------------------RMPWYEG---PSLLEHLETVE 232 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCcccccc--------------------------CCCcccH---hHHHHHHhcCC
Confidence 21111111111 246799999999999875421 2345555 34566554432
Q ss_pred HhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCc
Q psy4665 319 EIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGT 394 (673)
Q Consensus 319 ~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~ 394 (673)
......+.|++..|..++...+.+.-..|+|.+|++++||.+++++. ..+|++|+ +.++++|.||+.
T Consensus 233 ---~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~------ 303 (632)
T PRK05506 233 ---IASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQA------ 303 (632)
T ss_pred ---CCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCe------
Confidence 11223567899888887654322233569999999999999987664 57888887 888999999999
Q ss_pred EEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHH
Q psy4665 395 VKISLGFKINPFCPSGDVDGSVEALLDVFDTYTS 428 (673)
Q Consensus 395 v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~ 428 (673)
|++. +++...+.+|++|+..++.+.+...|.+
T Consensus 304 v~i~--l~~~~~i~rG~vL~~~~~~~~~~~~f~a 335 (632)
T PRK05506 304 VTLT--LADEIDISRGDMLARADNRPEVADQFDA 335 (632)
T ss_pred EEEE--ecCccccCCccEEecCCCCCcceeEEEE
Confidence 8843 3333456789999988765443333433
No 50
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.5e-27 Score=231.21 Aligned_cols=270 Identities=27% Similarity=0.321 Sum_probs=199.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC----------------ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT----------------SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~----------------~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
...||+.+||.+||||||..+|+.. .......+|+|+......++. .++.+-.+|+|||.+|.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDYv 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHHH
Confidence 3468999999999999999998542 122344689998887766666 67889999999999999
Q ss_pred hhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCC-cHH-----HHHHHHHHcCccccccC
Q psy4665 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAA-DIE-----RTKNMLLAQGITVEDLG 250 (673)
Q Consensus 178 ~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~-~~~-----~~~~~l~~~~~~~~~~~ 250 (673)
..+..++.+.|++|||++|++|.++||++++-.++..++| +++++||+|+.+. +.- ++.+.|..+++. +
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~----g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP----G 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC----C
Confidence 9999999999999999999999999999999999999998 7889999999862 211 122223333221 2
Q ss_pred CceeEEEeeccC-CCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCC
Q psy4665 251 GDIQAVPISALT-GTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329 (673)
Q Consensus 251 ~~~~~v~iSA~~-g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~ 329 (673)
.+.|++.-||.. .+|-.+ ....+.+|++++..+- +.+..+.+.
T Consensus 166 d~~Pii~gSal~ale~~~~----------------------------------~~~~i~eLm~avd~yi--p~Per~~dk 209 (394)
T COG0050 166 DDTPIIRGSALKALEGDAK----------------------------------WEAKIEELMDAVDSYI--PTPERDIDK 209 (394)
T ss_pred CCcceeechhhhhhcCCcc----------------------------------hHHHHHHHHHHHHhcC--CCCCCcccc
Confidence 345666555542 111111 1123567788877763 345566789
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEE-eCCc---ceEEEE--ecccccceeccCccccccCcEEEeeeCCC
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVV-AGQA---WAKVRS--ISRKTLINTALGTVQRTSGTVKISLGFKI 403 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~-~g~~---~~kvr~--i~~~~v~~a~~G~~~~~~g~v~~i~gl~~ 403 (673)
||.+.|-+++...++|+++++||.+|+|++|+.+. .|-. ...+.. |+++.++++.+|+. |++++....
T Consensus 210 PflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdn------vg~llRg~~ 283 (394)
T COG0050 210 PFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDN------VGVLLRGVK 283 (394)
T ss_pred cccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCC------cceEEEecc
Confidence 99999999999999999999999999999999884 3422 223333 45888999999999 886665554
Q ss_pred CCCCCCCCeEeecCChhhHHHHHHHHHH
Q psy4665 404 NPFCPSGDVDGSVEALLDVFDTYTSALC 431 (673)
Q Consensus 404 ~~~~~~Gd~l~~~~~~~~~~~~~~~~~~ 431 (673)
-..+.+|++|+...+..... .|+++..
T Consensus 284 r~~veRGqvLakpgsi~ph~-kfeaevy 310 (394)
T COG0050 284 REDVERGQVLAKPGSIKPHT-KFEAEVY 310 (394)
T ss_pred ccceecceEeecCCcccccc-eeeEEEE
Confidence 55677999999887753333 4544433
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.95 E-value=3.3e-26 Score=249.63 Aligned_cols=264 Identities=25% Similarity=0.309 Sum_probs=183.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEec--------------------C-----CeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLK--------------------S-----GEQV 165 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~--------------------~-----~~~i 165 (673)
...+|+++||.+||||||+++|.+.. ...+..+|+|.+.+.....+. + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 45789999999999999999997642 223345788887664332220 0 2579
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC-hHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcHH-HHHHHHHHc
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKV-PIIVAINKIDKPAADIE-RTKNMLLAQ 242 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~~-~~~~~l~~~ 242 (673)
+|||||||++|......++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+|+.+.+.. ...+.+...
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999988888889999999999999987 7889999988888876 58999999999753221 111222211
Q ss_pred CccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhh
Q psy4665 243 GITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMH 322 (673)
Q Consensus 243 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~ 322 (673)
... .+....+++++||++|.|+++|+ +.|.... ..
T Consensus 168 l~~--~~~~~~~ii~vSA~~g~gI~~L~-----------------------------------------~~L~~~l--~~ 202 (411)
T PRK04000 168 VKG--TVAENAPIIPVSALHKVNIDALI-----------------------------------------EAIEEEI--PT 202 (411)
T ss_pred hcc--ccCCCCeEEEEECCCCcCHHHHH-----------------------------------------HHHHHhC--CC
Confidence 000 01113456655555555555444 4443321 11
Q ss_pred cccCCCCCeEEEEEEEEeec--------CCcEEEEEEeeecEEeeCCEEEeCCcc--------------eEEEEec--cc
Q psy4665 323 LKADYGGPVEAMIVESKFDT--------HRGKLATALVQRGTLKKGAIVVAGQAW--------------AKVRSIS--RK 378 (673)
Q Consensus 323 ~~~~~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~G~Lk~g~~v~~g~~~--------------~kvr~i~--~~ 378 (673)
...+.+.|++..|.+++... ++|.++.++|.+|++++||.+.+.+.. ++|++|+ +.
T Consensus 203 ~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~ 282 (411)
T PRK04000 203 PERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGE 282 (411)
T ss_pred CCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCE
Confidence 22334678999999988554 367799999999999999999887642 5799988 88
Q ss_pred ccceeccCccccccCcEEEeeeCC-CC--CCCCCCCeEeecCChhhHHHHHHH
Q psy4665 379 TLINTALGTVQRTSGTVKISLGFK-IN--PFCPSGDVDGSVEALLDVFDTYTS 428 (673)
Q Consensus 379 ~v~~a~~G~~~~~~g~v~~i~gl~-~~--~~~~~Gd~l~~~~~~~~~~~~~~~ 428 (673)
++++|.||+. |++.+.++ ++ ..+.+||+++...+++.+...|.+
T Consensus 283 ~~~~a~~G~~------v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a 329 (411)
T PRK04000 283 KVEEARPGGL------VGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTI 329 (411)
T ss_pred ECCEEcCCCE------EEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEE
Confidence 9999999999 88544332 21 335689999988765444333433
No 52
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.95 E-value=4.6e-28 Score=212.18 Aligned_cols=98 Identities=38% Similarity=0.647 Sum_probs=90.6
Q ss_pred CCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhHHhHHHHcC
Q psy4665 456 TRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELG 535 (673)
Q Consensus 456 ~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~~~~a~~~~ 535 (673)
+.+.+.+|+|||||++||+|||.++|.++++++++++|+++||||||++||.+|++++|+|+||||++++++++.|+++|
T Consensus 11 ~~~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~~~~~a~~~~ 90 (108)
T PF11987_consen 11 EEEIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPDAKDLAKKSG 90 (108)
T ss_dssp C-CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HHHHHCHHSST
T ss_pred ccCCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHHHHHHHHHcC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEechhhHHHHHHHH
Q psy4665 536 VTVKQFNVIYKLVEDVKE 553 (673)
Q Consensus 536 V~i~~~~iIY~l~~~~~~ 553 (673)
|+|++|||||+|+||+++
T Consensus 91 V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 91 VKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SEEEESTTCCHHHHHHHH
T ss_pred CEEEEeCHHHHHHHHhhC
Confidence 999999999999999985
No 53
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.94 E-value=4.9e-26 Score=264.58 Aligned_cols=323 Identities=22% Similarity=0.289 Sum_probs=209.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc---------------c-ccccccceeeeEEEEE----EEecCCeEEEEEeCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS---------------V-VKSEFGGITQHIGAFV----VTLKSGEQVTFLDTPG 172 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~---------------~-~~~~~~g~T~~~~~~~----v~~~~~~~i~liDTpG 172 (673)
.+.++|+++||.|||||||+++|+... + .....+++|....... +.+ ++.+++||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCC
Confidence 357899999999999999999997521 1 1122367777654433 333 577899999999
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc--------Cc
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ--------GI 244 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~--------~~ 244 (673)
|.+|...+..+++.+|++++|+|+.+|+..++.++++.+...++|.++++||+|+..++.....+.+... ..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 9999988889999999999999999999999999999998899999999999999765433322222211 00
Q ss_pred ccc-----ccCC-------ceeEEEeeccCCC------------ChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeec
Q psy4665 245 TVE-----DLGG-------DIQAVPISALTGT------------NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPIS 300 (673)
Q Consensus 245 ~~~-----~~~~-------~~~~v~iSA~~g~------------gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~S 300 (673)
.+. .+.. ..+....|++.+. ..+++.+++. .+. .+++.. .+|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~-~~~~~~---~~Pv- 242 (720)
T TIGR00490 176 LIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCK--------EDK-QKELAK---KSPL- 242 (720)
T ss_pred hhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHH--------hcc-HHHHhh---hhhH-
Confidence 000 0000 0011122222221 1111111111 000 111111 1222
Q ss_pred cccCCCcchhHHHHHHHHHhhh-----------------------cccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEE
Q psy4665 301 ALTGTNVDNLTEAIVAQAEIMH-----------------------LKADYGGPVEAMIVESKFDTHRGKLATALVQRGTL 357 (673)
Q Consensus 301 a~~g~gl~~Ll~~i~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~L 357 (673)
+..||++|..+.+.+. ..+++++|+.++||++..+++.|+++++||++|+|
T Consensus 243 ------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL 316 (720)
T TIGR00490 243 ------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTI 316 (720)
T ss_pred ------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEE
Confidence 4678888887654331 11245678999999999999999999999999999
Q ss_pred eeCCEEEeCCc--ceEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHH
Q psy4665 358 KKGAIVVAGQA--WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSA 429 (673)
Q Consensus 358 k~g~~v~~g~~--~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~ 429 (673)
++||.|++.+. ..+|+.++ ..++++|.||++ |+ +.|++++. .||+|+..++..... ..
T Consensus 317 ~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI------v~-i~gl~~~~---~GdtL~~~~~~~~~~---~~- 382 (720)
T TIGR00490 317 RPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNI------VA-VIGLKDAV---AGETICTTVENITPF---ES- 382 (720)
T ss_pred cCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCE------EE-EECccccc---cCceeecCCcccccC---cc-
Confidence 99999976543 35666654 468999999999 88 88988654 699998654310000 00
Q ss_pred HHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeE
Q psy4665 430 LCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDI 493 (673)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~i 493 (673)
......+.+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 383 ------------------------~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v 422 (720)
T TIGR00490 383 ------------------------IKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHV 422 (720)
T ss_pred ------------------------cccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEE
Confidence 0001235666777777777777777777776654433333
No 54
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=233.28 Aligned_cols=339 Identities=24% Similarity=0.304 Sum_probs=235.7
Q ss_pred ccccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCcccCcCCcccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHH
Q psy4665 56 VNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDT 134 (673)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~ 134 (673)
.|++... +-++++.+..++++.|+.+..++ .+-... .......++. ....+....|+.+||+|+|||||+..
T Consensus 64 ~Gl~~~~-l~esievL~~la~evgA~i~~v~~~eg~~g--~Vaev~vrr~----~~~~~~hv~Vg~aGhVdhGKSTlvG~ 136 (527)
T COG5258 64 LGLSDEK-LVESIEVLRELAREVGASIYIVRVHEGTDG--YVAEVLVRRK----TEEAPEHVLVGVAGHVDHGKSTLVGV 136 (527)
T ss_pred cCCCHHH-HHHHHHHHHHHHHHhCCEEEEEEEEeccCc--EEEEEEEEec----ccCCCceEEEEEeccccCCcceEEEE
Confidence 5676665 66778889999999999988877 321111 1111222211 12223457899999999999999999
Q ss_pred HhcCcccccc--------------ccceeeeEEEEEEEecCC----------------------eEEEEEeCCCCCcchh
Q psy4665 135 LRNTSVVKSE--------------FGGITQHIGAFVVTLKSG----------------------EQVTFLDTPGHAAFSN 178 (673)
Q Consensus 135 L~~~~~~~~~--------------~~g~T~~~~~~~v~~~~~----------------------~~i~liDTpG~~~f~~ 178 (673)
|..++..... .+|.|-+++...+-+.++ +-+.|+||.||+.|..
T Consensus 137 LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLr 216 (527)
T COG5258 137 LVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLR 216 (527)
T ss_pred EEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHH
Confidence 9876544322 245555555554444322 2378999999999999
Q ss_pred hhhhcc--ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeE
Q psy4665 179 MRSRGA--HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 179 ~~~~~~--~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
+..+++ +..|..+|++.|++|++..|++++..+...++|+|++++|+|+... ....+.+.+...... -+.+|+
T Consensus 217 TtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~----v~Rip~ 292 (527)
T COG5258 217 TTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKR----VGRIPL 292 (527)
T ss_pred HHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHH----hcccce
Confidence 888877 7899999999999999999999999999999999999999999643 233333332221100 112333
Q ss_pred EEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccC-CceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEE
Q psy4665 256 VPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGG-DIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAM 334 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~-~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~ 334 (673)
+--|- ++...+. . .-...+ .+|+|..|+.+|.|++-|.+.+..+.... ..+..+||.++
T Consensus 293 ~vk~~------~d~v~aa---~---------a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr--~~~d~g~flmY 352 (527)
T COG5258 293 IVKDT------DDVVLAA---K---------AMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR--RWDDEGPFLMY 352 (527)
T ss_pred eeecc------chhHHhh---h---------hhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc--ccCCCCCeEEE
Confidence 21110 0110000 0 001222 56889999999999987777666543221 34678999999
Q ss_pred EEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc------ceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCC
Q psy4665 335 IVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA------WAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINP 405 (673)
Q Consensus 335 V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~------~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~ 405 (673)
|.+++...+.|+++.+.|.+|.|..||+++.|+- ..+||+|. +.+++.|.||.+ +++ +.|.. -.
T Consensus 353 Id~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~i------ig~Al~gv~-~e 425 (527)
T COG5258 353 IDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSI------IGIALKGVE-KE 425 (527)
T ss_pred EEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcE------EEEEecccC-HH
Confidence 9999999999999999999999999999999984 36788876 778999999999 884 44443 23
Q ss_pred CCCCCCeEeecCChhhHHHHHHHHHHHh
Q psy4665 406 FCPSGDVDGSVEALLDVFDTYTSALCRL 433 (673)
Q Consensus 406 ~~~~Gd~l~~~~~~~~~~~~~~~~~~~~ 433 (673)
.++.|+++... .++.+..+|.++...+
T Consensus 426 ~lerGMVl~~~-~~pkaVref~AeV~vl 452 (527)
T COG5258 426 ELERGMVLSAG-ADPKAVREFDAEVLVL 452 (527)
T ss_pred HHhcceEecCC-CCchhhheecceEEEE
Confidence 46689999876 4456666887776544
No 55
>KOG0464|consensus
Probab=99.94 E-value=2.8e-27 Score=241.10 Aligned_cols=300 Identities=23% Similarity=0.304 Sum_probs=217.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--------c----------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--------V----------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--------~----------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+++.|.++||||..++++.-. + ...+.+|+|+...+..+.| +|++++++|||||.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghv 113 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHV 113 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcc
Confidence 467899999999999999999986521 1 2234689999999999998 89999999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-C---ccc----
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-G---ITV---- 246 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~---~~~---- 246 (673)
+|+-..++.++..|+++.|+|++.|++.||..+|++..++++|.++++||||+..++++.....+.+. + +.+
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999888766555444432 1 111
Q ss_pred ---cccC-CceeE-----EE--eeccCC----------CChhhHHHHHHHHHHHHHh---------------------CC
Q psy4665 247 ---EDLG-GDIQA-----VP--ISALTG----------TNVDNLTEAIERTKNMLLA---------------------QG 284 (673)
Q Consensus 247 ---~~~~-~~~~~-----v~--iSA~~g----------~gv~~l~~~i~~~~~~~~~---------------------~~ 284 (673)
..|. +..++ ++ +.+..| .|-.++.+.+.+..+.+.+ +.
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence 0010 00000 00 111111 2223555555554444332 12
Q ss_pred CCccccc----------CCceeeeeccccCCCcchhHHHHHHHHHhhhcccC-----CCCCeEEEEEEEEeecCCcEEEE
Q psy4665 285 ITVEDLG----------GDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKAD-----YGGPVEAMIVESKFDTHRGKLAT 349 (673)
Q Consensus 285 ~~~ee~~----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~-----~~~~~~~~V~e~~~~~~~G~v~~ 349 (673)
++.+++. ...++.++||.++.|+..|++++..+.+.++.+.. .....++..|++.+|+.+|++++
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~f 353 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSF 353 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeE
Confidence 3444432 44568899999999999999999988654432211 24567788999999999999999
Q ss_pred EEeeecEEeeCCEEEeCCcceEEEE--ec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhh
Q psy4665 350 ALVQRGTLKKGAIVVAGQAWAKVRS--IS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLD 421 (673)
Q Consensus 350 ~~V~~G~Lk~g~~v~~g~~~~kvr~--i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~ 421 (673)
.|+++|+++.+..+.+-+..+..+. ++ ...+....+|.+ +++.|++.+.+ |||+...++-.+
T Consensus 354 mriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagni-------alt~glk~tat---gdtivaskasa~ 423 (753)
T KOG0464|consen 354 MRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNI-------ALTAGLKHTAT---GDTIVASKASAE 423 (753)
T ss_pred EEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccE-------EEEecceeecc---CCeEEecchhHH
Confidence 9999999999999976544333333 22 445565555555 66899998776 999988766444
Q ss_pred HH
Q psy4665 422 VF 423 (673)
Q Consensus 422 ~~ 423 (673)
++
T Consensus 424 aa 425 (753)
T KOG0464|consen 424 AA 425 (753)
T ss_pred HH
Confidence 33
No 56
>KOG0458|consensus
Probab=99.94 E-value=2.1e-25 Score=238.78 Aligned_cols=265 Identities=24% Similarity=0.312 Sum_probs=208.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC-------------------------------ccccccccceeeeEEEEEEEecCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT-------------------------------SVVKSEFGGITQHIGAFVVTLKSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~-------------------------------~~~~~~~~g~T~~~~~~~v~~~~~ 162 (673)
...+++++||+++|||||+.+|+.. +...++.+|+|.++....++. +.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 4568999999999999999998642 112344689999999888885 67
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKPAADIER 234 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~ 234 (673)
+.++|+|+|||.+|...+..++..||+++||+|++.+.+ .|++++...++.+|+- +||++||||+.+++.++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 789999999999999999999999999999999998654 3899999999999986 99999999999999888
Q ss_pred HHHHHHHcCccc-cccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchh
Q psy4665 235 TKNMLLAQGITV-EDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 310 (673)
Q Consensus 235 ~~~~l~~~~~~~-~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~L 310 (673)
+.+.....+..+ +.++ .++.++|+|+.+|+|+...-. +.. ...|++|.. |
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~---~~~--------------------l~~WY~Gp~---L 388 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQ---ENE--------------------LSQWYKGPT---L 388 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccccc---chh--------------------hhhhhcCCh---H
Confidence 877666555444 2222 356899999999999865321 000 235667754 6
Q ss_pred HHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccC
Q psy4665 311 TEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALG 386 (673)
Q Consensus 311 l~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G 386 (673)
|+.|... . ........|+++.|.+++..+..|..++|+|.+|.+++|+.++.++. .+.|+.+. ..+...|.+|
T Consensus 389 L~~id~~-~--~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AG 465 (603)
T KOG0458|consen 389 LSQIDSF-K--IPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAG 465 (603)
T ss_pred HHHHhhc-c--CCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeC
Confidence 6666552 1 22333667999999999999999999999999999999999988775 47888887 6789999999
Q ss_pred ccccccCcEEE-eeeCCCCCCCCCCCeEee
Q psy4665 387 TVQRTSGTVKI-SLGFKINPFCPSGDVDGS 415 (673)
Q Consensus 387 ~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~ 415 (673)
|. |.+ +.++. ...|..||+++.
T Consensus 466 D~------Vsl~L~~i~-~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 466 DN------VSLKLPGIL-PNLVQVGDIADS 488 (603)
T ss_pred CE------EEEecCccC-hhhcccceeeec
Confidence 99 772 33322 233568999884
No 57
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.3e-25 Score=234.40 Aligned_cols=249 Identities=26% Similarity=0.328 Sum_probs=195.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.|+.+||.++|||||+.++.+.. ......+|+|.+++.+....++ ..+.|+|.|||++|...+..++...|.++||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-GVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-CceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 58899999999999999998864 4455678999999998888754 4899999999999999999899999999999
Q ss_pred EECCCCChHhhHHHHHHHHHcCCCE-EEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 194 VAADDGVMEQTVESIRMAREAKVPI-IVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 194 vda~~g~~~q~~~~l~~~~~~~iP~-IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
||+++|++.||.|++..+..++++. ++|+||+|+.+. .+..+..++...... ..+.+++
T Consensus 81 V~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~--l~~~~i~---------------- 140 (447)
T COG3276 81 VAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS--LANAKIF---------------- 140 (447)
T ss_pred EeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc--ccccccc----------------
Confidence 9999999999999999999999995 999999999742 233222222111110 0123344
Q ss_pred HHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEe
Q psy4665 273 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALV 352 (673)
Q Consensus 273 i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V 352 (673)
+.|+.+|+|+++|-+.|....+ ....+.+.|+...|...+..++.|+|++|.+
T Consensus 141 -------------------------~~s~~~g~GI~~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv 193 (447)
T COG3276 141 -------------------------KTSAKTGRGIEELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTV 193 (447)
T ss_pred -------------------------ccccccCCCHHHHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEE
Confidence 5566666666666666655543 3455678999999999999999999999999
Q ss_pred eecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCCh
Q psy4665 353 QRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 353 ~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~ 419 (673)
.+|++++||.+++.+. ..+||+|+ ..++++|.||+. |++.+.-.....+.+||.|...+..
T Consensus 194 ~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~R------VgLaL~~v~~eei~RG~~L~~~~~~ 258 (447)
T COG3276 194 LSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQR------VGLALKGVEKEEIERGDWLLKPEPL 258 (447)
T ss_pred eeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccce------eeeecCCCCHHHhhcccEeccCCCC
Confidence 9999999999987764 47888998 889999999999 8832222234456789999876643
No 58
>PTZ00416 elongation factor 2; Provisional
Probab=99.94 E-value=6.9e-25 Score=257.98 Aligned_cols=325 Identities=22% Similarity=0.266 Sum_probs=210.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc----------------ccccccceeeeEEEEEEEec---------CCeEEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV----------------VKSEFGGITQHIGAFVVTLK---------SGEQVTF 167 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~----------------~~~~~~g~T~~~~~~~v~~~---------~~~~i~l 167 (673)
.+.++|+++||+|||||||+++|+.... ..+..+|+|.+.....+.+. .++.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4678999999999999999999976321 12234678887766666553 1567999
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC----C-------CcHHHHH
Q psy4665 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP----A-------ADIERTK 236 (673)
Q Consensus 168 iDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~----~-------~~~~~~~ 236 (673)
+|||||.+|......+++.+|++++|+|+.+|+..|+..+|+++...++|+|+++||||+. + ++..++.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii 176 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTI 176 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 3 4555555
Q ss_pred HHHHHcCc----------cccccCCceeEEEeeccCCCC-----------------------------------------
Q psy4665 237 NMLLAQGI----------TVEDLGGDIQAVPISALTGTN----------------------------------------- 265 (673)
Q Consensus 237 ~~l~~~~~----------~~~~~~~~~~~v~iSA~~g~g----------------------------------------- 265 (673)
+.++..-. .+.... .++...|+..|.+
T Consensus 177 ~~in~~l~~~~~~~~~~~~~~p~~--~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~ 254 (836)
T PTZ00416 177 ENVNVIIATYNDELMGDVQVYPEK--GTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKD 254 (836)
T ss_pred HHHHHHHHhcccccccceecceec--cEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEec
Confidence 55543200 000000 0111122221000
Q ss_pred --------------------hhhHHHHHHHH----HHHHHhC---CCCcccc--cC-Cc------eeeeeccccCCCcch
Q psy4665 266 --------------------VDNLTEAIERT----KNMLLAQ---GITVEDL--GG-DI------QAVPISALTGTNVDN 309 (673)
Q Consensus 266 --------------------v~~l~~~i~~~----~~~~~~~---~~~~ee~--~~-~~------~v~~~Sa~~g~gl~~ 309 (673)
..++++.+.+. .+.+++. .++.+++ .. .+ .++|+ +..
T Consensus 255 ~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv-------~~~ 327 (836)
T PTZ00416 255 ETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPA-------ADT 327 (836)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhch-------HHH
Confidence 11222222222 2222221 1333331 11 01 12232 678
Q ss_pred hHHHHHHHHHhhh-----------------------cccCCCCCeEEEEEEEEeecCCcE-EEEEEeeecEEeeCCEEE-
Q psy4665 310 LTEAIVAQAEIMH-----------------------LKADYGGPVEAMIVESKFDTHRGK-LATALVQRGTLKKGAIVV- 364 (673)
Q Consensus 310 Ll~~i~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~-v~~~~V~~G~Lk~g~~v~- 364 (673)
||+++..+.+.+. ..+++++|+.++|+++..++..|+ ++++||+||+|+.|+.|+
T Consensus 328 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v 407 (836)
T PTZ00416 328 LLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRI 407 (836)
T ss_pred HHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEE
Confidence 8999888754331 112345689999999999999999 899999999999999996
Q ss_pred eCCc---c-------eEEEEec------ccccceeccCccccccCcEEEeeeCCC--CCCCCCCCeEeecCChhhHHHHH
Q psy4665 365 AGQA---W-------AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKI--NPFCPSGDVDGSVEALLDVFDTY 426 (673)
Q Consensus 365 ~g~~---~-------~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~--~~~~~~Gd~l~~~~~~~~~~~~~ 426 (673)
.|+. . .++..++ ..+++++.||++ ++ +.|+++ +. .| ||+...+....
T Consensus 408 ~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI------~~-i~gl~~~~~~---tg-TL~~~~~~~~l---- 472 (836)
T PTZ00416 408 QGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNT------VG-LVGVDQYLVK---SG-TITTSETAHNI---- 472 (836)
T ss_pred eCCCCCCCCcccchheecceeEEecCCCceECcEECCCCE------EE-EEecccceec---ce-eecCCCCcccc----
Confidence 2321 1 1233443 568999999999 88 889886 33 48 88754321000
Q ss_pred HHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCC
Q psy4665 427 TSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTS 486 (673)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~ 486 (673)
.. . .-...+.+.+-|.+...+-.+.+.++|..+..
T Consensus 473 ~~----i---------------------~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~ 507 (836)
T PTZ00416 473 RD----M---------------------KYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAK 507 (836)
T ss_pred cc----c---------------------ccCCCCeEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 00 0 00013456666666666666666666666654
No 59
>KOG0460|consensus
Probab=99.93 E-value=2e-25 Score=223.47 Aligned_cols=268 Identities=28% Similarity=0.349 Sum_probs=194.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC----------------ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT----------------SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~----------------~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
...||+-+||++||||||.-+++.- +...+..+|+|+......++. ..+.+--+|+|||.+|.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHADYI 131 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHHHH
Confidence 3468999999999999999998641 123344689998765555544 45688899999999999
Q ss_pred hhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCC-CcHH-----HHHHHHHHcCccccccC
Q psy4665 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPA-ADIE-----RTKNMLLAQGITVEDLG 250 (673)
Q Consensus 178 ~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~-~~~~-----~~~~~l~~~~~~~~~~~ 250 (673)
..+..++.+.|++|||++|+||.++||++++-.+++-+++ +++++||.|+.+ .+.- ++.+.|.++++ -+
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf----~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF----DG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC----CC
Confidence 9999999999999999999999999999999999999998 888999999974 3221 12233333332 13
Q ss_pred CceeEEEeeccC---CCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCC
Q psy4665 251 GDIQAVPISALT---GTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADY 327 (673)
Q Consensus 251 ~~~~~v~iSA~~---g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~ 327 (673)
.+.|++.-||+. |.+- ...-..+..||+++..+ .+.+..+.
T Consensus 208 d~~PvI~GSAL~ALeg~~p----------------------------------eig~~aI~kLldavDsy--ip~P~R~~ 251 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQP----------------------------------EIGLEAIEKLLDAVDSY--IPTPERDL 251 (449)
T ss_pred CCCCeeecchhhhhcCCCc----------------------------------cccHHHHHHHHHHHhcc--CCCccccc
Confidence 467777666643 1100 00001245666766665 34556677
Q ss_pred CCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEE-EeCCc---ceEEEE--ecccccceeccCccccccCcEEE-eee
Q psy4665 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV-VAGQA---WAKVRS--ISRKTLINTALGTVQRTSGTVKI-SLG 400 (673)
Q Consensus 328 ~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v-~~g~~---~~kvr~--i~~~~v~~a~~G~~~~~~g~v~~-i~g 400 (673)
+.||...|-+++..+++|+++++++.+|+||+|+.+ ..|-. ...|.. |+++.+++|.|||. +++ +-|
T Consensus 252 ~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn------~G~LlRG 325 (449)
T KOG0460|consen 252 DKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDN------LGALLRG 325 (449)
T ss_pred CCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccc------eehhhhc
Confidence 899999999999999999999999999999999998 34432 122333 34899999999999 884 445
Q ss_pred CCCCCCCCCCCeEeecCChhhHHHHHHHHH
Q psy4665 401 FKINPFCPSGDVDGSVEALLDVFDTYTSAL 430 (673)
Q Consensus 401 l~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~ 430 (673)
++. ..+++|.+++...+. ...++|++++
T Consensus 326 ik~-~dvkRGmvl~~pGsv-k~~~k~ea~~ 353 (449)
T KOG0460|consen 326 IKR-EDVKRGMVLAKPGSV-KPHNKFEAQL 353 (449)
T ss_pred CCH-HHHhcccEEecCCcc-cccceeeEEE
Confidence 553 346689999988774 2222444433
No 60
>COG2262 HflX GTPases [General function prediction only]
Probab=99.93 E-value=7.6e-27 Score=242.45 Aligned_cols=242 Identities=24% Similarity=0.262 Sum_probs=171.2
Q ss_pred CcccccHHHHHHHhhcchhHHHHHhhhccc-ccccCCccccccHHHHHHHHHHhCCe------eEE----Ec-cCCCccc
Q psy4665 26 SSVIYDFQVIIDIIQKSDHLYEVMMYVDNS-VNYDRPSSVIYDFQVIIDIIQKSGMK------YMV----IN-PTNSVAD 93 (673)
Q Consensus 26 ~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~l~~~~~~~~~~~~~g~~------~~~----~~-~~~~~~~ 93 (673)
-+|+||+++||+||+++|+++++++||++| +.|..|+ +.+....+.+..+.+|.+ +.. ++ +...++.
T Consensus 93 ~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpR-l~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~ 171 (411)
T COG2262 93 VKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPR-LVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKLKR 171 (411)
T ss_pred CEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhH-hHhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999 9999999 555443333222222222 000 00 1111111
Q ss_pred CcCCcccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 94 DSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
++...+..+. ...........|.|+++|++|+|||||+|+|++......+..+.|.++..+.+.+++|..+.|-||.|+
T Consensus 172 eLe~v~~~R~-~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGF 250 (411)
T COG2262 172 ELENVEKARE-PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGF 250 (411)
T ss_pred HHHHHHHHHH-HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccC
Confidence 1111111111 122234456789999999999999999999999998888899999999999999988899999999996
Q ss_pred ---------CcchhhhhhccccCCeEEEEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCCcHHHHHHHHH
Q psy4665 174 ---------AAFSNMRSRGAHCTDIVVLVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAADIERTKNMLL 240 (673)
Q Consensus 174 ---------~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~~~~~~~~~l~ 240 (673)
++|.++.+ ....||++++|+|++++...+. ....+.+.+ ..+|+|+|+||+|+..... ....+.
T Consensus 251 I~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~ 327 (411)
T COG2262 251 IRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELE 327 (411)
T ss_pred cccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhh
Confidence 56777776 6788999999999999643322 223333333 5689999999999864322 111111
Q ss_pred HcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHH
Q psy4665 241 AQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 241 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 281 (673)
.. ....+++||++|.|++.|.+.|.+.....+
T Consensus 328 ~~---------~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 328 RG---------SPNPVFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred hc---------CCCeEEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 11 115899999999999999999988766443
No 61
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=1.7e-26 Score=246.18 Aligned_cols=232 Identities=24% Similarity=0.284 Sum_probs=158.5
Q ss_pred CcccccHHHHHHHhhcchhHHHHHhhhccc-ccccCCccccccHHHHHHHHHHhCCeeEEEccCCC-cccCcCC------
Q psy4665 26 SSVIYDFQVIIDIIQKSDHLYEVMMYVDNS-VNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNS-VADDSNG------ 97 (673)
Q Consensus 26 ~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~------ 97 (673)
-+|+||+++||+||+++|.++++++||+++ +.|..++ .......++++...+|.+ -+.+. ...+...
T Consensus 90 ~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r-~~~~~~~l~~~~~~i~~~----g~gE~~~~~~~~~i~~ri~ 164 (351)
T TIGR03156 90 CRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPR-LVGGWTHLSRQGGGIGTR----GPGETQLETDRRLIRERIA 164 (351)
T ss_pred CcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhh-hhhhHHHHHhhcCCCCCC----CCChhHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999 9999998 444332233322222221 11111 1100000
Q ss_pred -----cccccCCC--CCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 98 -----KDVERRPP--ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 98 -----~~~~~~~~--~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
++...+.. ..........++|+++|++|+|||||+|+|++..+...+.+++|.++....+.++++..+.||||
T Consensus 165 ~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT 244 (351)
T TIGR03156 165 QLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDT 244 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEec
Confidence 01000000 00011123568999999999999999999999887777788999999888888877789999999
Q ss_pred CCC---------CcchhhhhhccccCCeEEEEEECCCCChHhhH----HHHHHHHHcCCCEEEEEecCCCCCCcHHHHHH
Q psy4665 171 PGH---------AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTV----ESIRMAREAKVPIIVAINKIDKPAADIERTKN 237 (673)
Q Consensus 171 pG~---------~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~----~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~ 237 (673)
||+ +.|..++. .+..||++++|+|++++...... +.+..+...+.|+++|+||+|+... .....
T Consensus 245 ~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~~ 321 (351)
T TIGR03156 245 VGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIER 321 (351)
T ss_pred CcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHHH
Confidence 997 33444433 57889999999999987654433 2333333347899999999999642 12211
Q ss_pred HHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 238 MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
... ...+++++||++|.|++++++++.+
T Consensus 322 -~~~---------~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 322 -LEE---------GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred -HHh---------CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 111 1235899999999999999998865
No 62
>PRK11058 GTPase HflX; Provisional
Probab=99.93 E-value=3.4e-26 Score=249.24 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=160.2
Q ss_pred CcccccHHHHHHHhhcchhHHHHHhhhccc-ccccCCccccccHHHHHHHHHHhCCeeEEEccCC-CcccCc--------
Q psy4665 26 SSVIYDFQVIIDIIQKSDHLYEVMMYVDNS-VNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTN-SVADDS-------- 95 (673)
Q Consensus 26 ~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~-------- 95 (673)
-+|+||+++||+||+++|+++++++||++| +.|..|+ +.+....+++....+|.+ .+.+ .++.+.
T Consensus 98 ~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~pr-l~~~~~~l~~~~gg~g~~----g~ge~~~e~d~r~i~~ri~ 172 (426)
T PRK11058 98 CRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATR-LVRGWTHLERQKGGIGLR----GPGETQLETDRRLLRNRIV 172 (426)
T ss_pred CeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhh-hhccccchhhhcCCCCCC----CCChhHhHHHHHHHHHHHH
Confidence 569999999999999999999999999999 9999999 444333444443333321 1111 111000
Q ss_pred ---CCcccccCCCCCC--ccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 96 ---NGKDVERRPPADP--SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 96 ---~~~~~~~~~~~~~--~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
..++...+..... .......|.|+++|++|||||||+|+|++..+...+.+++|.+.....+.++++..+.||||
T Consensus 173 ~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DT 252 (426)
T PRK11058 173 QILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADT 252 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEec
Confidence 0011000000000 01112458999999999999999999999887777788999998888888755558999999
Q ss_pred CCCCc---------chhhhhhccccCCeEEEEEECCCCChHhhH----HHHHHHHHcCCCEEEEEecCCCCCCcHHHHHH
Q psy4665 171 PGHAA---------FSNMRSRGAHCTDIVVLVVAADDGVMEQTV----ESIRMAREAKVPIIVAINKIDKPAADIERTKN 237 (673)
Q Consensus 171 pG~~~---------f~~~~~~~~~~aD~~vlVvda~~g~~~q~~----~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~ 237 (673)
||+.. |.... ..+..||++++|+|++++...... ..+..+...++|+++|+||+|+.........
T Consensus 253 aG~~r~lp~~lve~f~~tl-~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~- 330 (426)
T PRK11058 253 VGFIRHLPHDLVAAFKATL-QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID- 330 (426)
T ss_pred CcccccCCHHHHHHHHHHH-HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH-
Confidence 99843 33332 356889999999999987654443 3344444457999999999999643211111
Q ss_pred HHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 238 MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
....+ ...++++||++|.|+++|++++.+..
T Consensus 331 -~~~~~--------~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 331 -RDEEN--------KPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -HHhcC--------CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 11111 11258899999999999999998765
No 63
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=3.2e-24 Score=237.34 Aligned_cols=265 Identities=22% Similarity=0.269 Sum_probs=189.8
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.+.|.|+. +|+.. ...-....+..+......+++.+++++|...+++..+ ..+++++++
T Consensus 33 ~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d------~~i~~~l~~ 105 (429)
T TIGR03594 33 VTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED------EEIAKWLRK 105 (429)
T ss_pred cccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH------HHHHHHHHH
Confidence 7999999999999988 88853 2111123344445556777888888999776665554 567888888
Q ss_pred hCCeeEEEc-cCCCcccCcCC-------------------------cc-cccCCCCCC--ccccCCCCEEEEEeCCCCCh
Q psy4665 78 SGMKYMVIN-PTNSVADDSNG-------------------------KD-VERRPPADP--SVLMKRPPVVTIMGHVDHGK 128 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~-------------------------~~-~~~~~~~~~--~~~~~~~~~V~ivG~~n~GK 128 (673)
.+.++.++. |.|........ ++ ..+..+... ........+|+++|++|+||
T Consensus 106 ~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GK 185 (429)
T TIGR03594 106 SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGK 185 (429)
T ss_pred hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCH
Confidence 999988877 87754322111 00 011111111 11123457899999999999
Q ss_pred hHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh----------h-hhccccCCeEEEEEEC
Q psy4665 129 TTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM----------R-SRGAHCTDIVVLVVAA 196 (673)
Q Consensus 129 STLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~----------~-~~~~~~aD~~vlVvda 196 (673)
|||+|+|++.. ....+.+++|.+.....+.. ++..+++|||||+.++... + ..+++.+|++++|+|+
T Consensus 186 SsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~ 264 (429)
T TIGR03594 186 STLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDA 264 (429)
T ss_pred HHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 99999999875 34566788998887777776 6779999999997654322 1 2467899999999999
Q ss_pred CCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC-C-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHH
Q psy4665 197 DDGVMEQTVESIRMAREAKVPIIVAINKIDKPA-A-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274 (673)
Q Consensus 197 ~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 274 (673)
+++...++.+.+..+...++|+++|+||||+.. . ..+.+.+.+..... +...++++++||++|.|++++++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 265 TEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLP----FLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcc----cCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999889999999999999972 1 12233333332211 11347899999999999999999998
Q ss_pred HHHHHH
Q psy4665 275 RTKNML 280 (673)
Q Consensus 275 ~~~~~~ 280 (673)
+....+
T Consensus 341 ~~~~~~ 346 (429)
T TIGR03594 341 EVYENA 346 (429)
T ss_pred HHHHHh
Confidence 876554
No 64
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.92 E-value=3.1e-24 Score=221.04 Aligned_cols=197 Identities=26% Similarity=0.292 Sum_probs=148.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcc------------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSV------------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~------------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
||+++||+|+|||||+++|+.... .....+++|.+.....+.+ ++.+++|+|||||.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHHH
Confidence 589999999999999999964211 1223578999998888988 688999999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
.+.++++.+|++++|+|+.+|...++.++++.+...++|+++++||+|+.+++.++..+.+++.... ......+|+
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~----~~~~~~~Pi 155 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGA----NPVPLQLPI 155 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC----CceEEEecc
Confidence 9999999999999999999999999999999999999999999999999988877776666554110 011234444
Q ss_pred eccCC----------------C--C-------h------------hhHHHHHHHHH----HHHHhCC-CCccccc-----
Q psy4665 259 SALTG----------------T--N-------V------------DNLTEAIERTK----NMLLAQG-ITVEDLG----- 291 (673)
Q Consensus 259 SA~~g----------------~--g-------v------------~~l~~~i~~~~----~~~~~~~-~~~ee~~----- 291 (673)
|+..+ . + + ++|.+.+.+.. +.|++++ ++.+++.
T Consensus 156 sa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~ 235 (270)
T cd01886 156 GEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRK 235 (270)
T ss_pred ccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44321 0 1 0 13334443333 3333333 6666653
Q ss_pred -----CCceeeeeccccCCCcchhHHHHHHHH
Q psy4665 292 -----GDIQAVPISALTGTNVDNLTEAIVAQA 318 (673)
Q Consensus 292 -----~~~~v~~~Sa~~g~gl~~Ll~~i~~~~ 318 (673)
..+|+|++||.++.|+..||+.|..+.
T Consensus 236 ~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 236 GTIANKIVPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred HHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 344789999999999999999998874
No 65
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=1.5e-24 Score=212.51 Aligned_cols=162 Identities=35% Similarity=0.525 Sum_probs=131.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc------------------cccccceeeeEEEEEEE--ecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV------------------KSEFGGITQHIGAFVVT--LKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~------------------~~~~~g~T~~~~~~~v~--~~~~~~i~liDTpG~ 173 (673)
+.++|+++||++||||||+++|+..... .+..+++|.+.....+. . .++.++|+|||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 4679999999999999999999754311 12246888888888877 5 7889999999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCC--
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGG-- 251 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~-- 251 (673)
.+|...+.+++..+|++++|+|+.+|...++.+++..+...++|+++|+||||+...+..+..+++.........+.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTS
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccc
Confidence 999999999999999999999999999999999999999999999999999999855555544444422111111222
Q ss_pred ceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 252 DIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 252 ~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
.++++++||++|.|+++|++.+.+.
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cceEEEEecCCCCCHHHHHHHHHHh
Confidence 5899999999999999999998765
No 66
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.1e-23 Score=234.63 Aligned_cols=265 Identities=20% Similarity=0.249 Sum_probs=187.5
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.+.|.++. ||+.. ........+..+.......++.+++++|...+.+..+ ..+..++++
T Consensus 72 vT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~------~~i~~~l~~ 144 (472)
T PRK03003 72 VTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD------EAVARVLRR 144 (472)
T ss_pred CCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH------HHHHHHHHH
Confidence 7999999999999988 88863 1111222344455556778888999999776554433 466777888
Q ss_pred hCCeeEEEc-cCCCcccCcCC-------------------------cc-cccCCCCC--CccccCCCCEEEEEeCCCCCh
Q psy4665 78 SGMKYMVIN-PTNSVADDSNG-------------------------KD-VERRPPAD--PSVLMKRPPVVTIMGHVDHGK 128 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~-------------------------~~-~~~~~~~~--~~~~~~~~~~V~ivG~~n~GK 128 (673)
.+.++.++. |.|........ ++ +....+.. ......+.++|+++|++|+||
T Consensus 145 ~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGK 224 (472)
T PRK03003 145 SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGK 224 (472)
T ss_pred cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCH
Confidence 899988877 87753211000 00 11111110 011123568999999999999
Q ss_pred hHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC----------Ccchhhhh-hccccCCeEEEEEEC
Q psy4665 129 TTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AAFSNMRS-RGAHCTDIVVLVVAA 196 (673)
Q Consensus 129 STLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----------~~f~~~~~-~~~~~aD~~vlVvda 196 (673)
|||+|+|++... ..+..+|+|.+.....+.+ ++..+.||||||+ +.|..++. .+++.+|++++|+|+
T Consensus 225 SSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da 303 (472)
T PRK03003 225 SSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDA 303 (472)
T ss_pred HHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 999999998864 4567789998887777777 6788999999995 33333332 356899999999999
Q ss_pred CCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 197 DDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 197 ~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
+++...+....+..+...++|+|+|+||||+.+.+. ......+.... . ....++++++||++|.|++++++.+.+
T Consensus 304 ~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l---~-~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 304 SEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDREL---A-QVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhc---c-cCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 999999999988888888999999999999975322 22222222211 1 112368899999999999999999988
Q ss_pred HHHHH
Q psy4665 276 TKNML 280 (673)
Q Consensus 276 ~~~~~ 280 (673)
..+.+
T Consensus 380 ~~~~~ 384 (472)
T PRK03003 380 ALESW 384 (472)
T ss_pred HHHHh
Confidence 77654
No 67
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.91 E-value=9.1e-24 Score=213.83 Aligned_cols=199 Identities=29% Similarity=0.359 Sum_probs=148.7
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccc------------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVV------------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~------------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
+|+++||+|+|||||+++|+..... ....+++|.......+.+ ++.+++|||||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchHH
Confidence 5899999999999999999763211 122467777777777877 688999999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc--cccCCceeE
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV--EDLGGDIQA 255 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~--~~~~~~~~~ 255 (673)
.+.++++.+|++++|+|++++...++.++++.+...++|+++++||+|+.+++.++..+.+++. +... -........
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 159 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPN 159 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeee
Confidence 9999999999999999999999999999999999999999999999999988888877777654 1111 000000000
Q ss_pred EEeeccCCCChhhHHHHHHHHHHH----HHhCC-CCccccc----------CCceeeeeccccCCCcchhHHHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIERTKNM----LLAQG-ITVEDLG----------GDIQAVPISALTGTNVDNLTEAIVAQAE 319 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~~~----~~~~~-~~~ee~~----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~ 319 (673)
+ .. ...--+++.+.+.+..+. |++++ ++.+++. ..+|++++||.++.|+..||+.|..+.+
T Consensus 160 ~--~~-~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 160 I--CE-TNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred e--ee-eeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 10 111126677777655544 44443 6666653 3447899999999999999999988753
No 68
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.4e-22 Score=224.65 Aligned_cols=265 Identities=23% Similarity=0.313 Sum_probs=187.6
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.+.|.|.. +|+.. ...-....+..+......+++.+++++|...+++..+ .++.+++++
T Consensus 35 ~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~------~~~~~~l~~ 107 (435)
T PRK00093 35 VTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD------EEIAKILRK 107 (435)
T ss_pred CcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH------HHHHHHHHH
Confidence 6999999999999987 88864 1111222344445556777888888998766555544 567788888
Q ss_pred hCCeeEEEc-cCCCcccCcCC-------------------------cc-cccCCCC-CCccccCCCCEEEEEeCCCCChh
Q psy4665 78 SGMKYMVIN-PTNSVADDSNG-------------------------KD-VERRPPA-DPSVLMKRPPVVTIMGHVDHGKT 129 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~-------------------------~~-~~~~~~~-~~~~~~~~~~~V~ivG~~n~GKS 129 (673)
.+.++.++. |.|........ .+ +....+. .........++|+++|++|+|||
T Consensus 108 ~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKS 187 (435)
T PRK00093 108 SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKS 187 (435)
T ss_pred cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHH
Confidence 899988877 87743211000 00 0000000 00011235689999999999999
Q ss_pred HHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc----------hhhh-hhccccCCeEEEEEECC
Q psy4665 130 TLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF----------SNMR-SRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 130 TLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f----------~~~~-~~~~~~aD~~vlVvda~ 197 (673)
||+|+|++.. ....+.+|+|.+.....+.+ ++..+.+|||||+... ...+ .+++..+|++++|+|++
T Consensus 188 tlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~ 266 (435)
T PRK00093 188 SLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266 (435)
T ss_pred HHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9999999865 45677789998887666666 6788999999997432 2122 24678899999999999
Q ss_pred CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 198 DGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 198 ~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
++...++...+..+...+.|+++++||||+.+.. ..+..+.+.... . +...++++++||++|.|++++++.+.+.
T Consensus 267 ~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l---~-~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 267 EGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL---P-FLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc---c-cccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999997322 223333333221 1 1235789999999999999999999887
Q ss_pred HHHH
Q psy4665 277 KNML 280 (673)
Q Consensus 277 ~~~~ 280 (673)
...+
T Consensus 343 ~~~~ 346 (435)
T PRK00093 343 YENA 346 (435)
T ss_pred HHHH
Confidence 6554
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=1e-22 Score=194.94 Aligned_cols=163 Identities=61% Similarity=0.904 Sum_probs=134.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
|+|+++|++|+|||||+++|....+...+.+++|++.....+... .+..+++|||||++.|..++..++..+|++++|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 679999999999999999999988777777788888776666653 367899999999999999988889999999999
Q ss_pred EECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccc-cccCCceeEEEeeccCCCChhhHHHH
Q psy4665 194 VAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV-EDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 194 vda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
+|++++...++.+.+..+...++|+++++||+|+...+.+.....+....... +.++..++++++||++|.|+++++++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 99999888888888888888999999999999998665555555554432221 12334578999999999999999999
Q ss_pred HHHHHH
Q psy4665 273 IERTKN 278 (673)
Q Consensus 273 i~~~~~ 278 (673)
+.+...
T Consensus 161 l~~~~~ 166 (168)
T cd01887 161 ILLLAE 166 (168)
T ss_pred HHHhhh
Confidence 977643
No 70
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=8.8e-23 Score=237.68 Aligned_cols=265 Identities=18% Similarity=0.242 Sum_probs=188.7
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||++|+..+|.++. ||+.. ...-......-+......+++.+++++|...+++..+ ..+...+++
T Consensus 309 vT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d------~~i~~~Lr~ 381 (712)
T PRK09518 309 VTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD------ERIVRMLRR 381 (712)
T ss_pred eeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH------HHHHHHHHh
Confidence 7999999999999887 88864 2211223455566667788899999999776655444 456777888
Q ss_pred hCCeeEEEc-cCCCcccCcCC-------------------------cc-cccCCCCCCc-c---ccCCCCEEEEEeCCCC
Q psy4665 78 SGMKYMVIN-PTNSVADDSNG-------------------------KD-VERRPPADPS-V---LMKRPPVVTIMGHVDH 126 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~-------------------------~~-~~~~~~~~~~-~---~~~~~~~V~ivG~~n~ 126 (673)
.+.++.++. |.|........ ++ +....+.... . .....++|+++|++|+
T Consensus 382 ~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nv 461 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNV 461 (712)
T ss_pred cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCC
Confidence 999988877 77753321110 00 0111111111 0 1234689999999999
Q ss_pred ChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC----------cchhhhh-hccccCCeEEEEE
Q psy4665 127 GKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA----------AFSNMRS-RGAHCTDIVVLVV 194 (673)
Q Consensus 127 GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~----------~f~~~~~-~~~~~aD~~vlVv 194 (673)
|||||+|+|++... ...+.+|+|.+.....+.+ ++..+.||||||+. .|..++. .+++.+|++++|+
T Consensus 462 GKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilVi 540 (712)
T PRK09518 462 GKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLF 540 (712)
T ss_pred CHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEE
Confidence 99999999999874 3566788998887777777 67889999999963 2333322 3468899999999
Q ss_pred ECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHH
Q psy4665 195 AADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273 (673)
Q Consensus 195 da~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i 273 (673)
|++++...++...+..+...++|+++|+||||+.+... +.....+... +. .....+++++||++|.|++++++.+
T Consensus 541 Dat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~---l~-~~~~~~ii~iSAktg~gv~~L~~~i 616 (712)
T PRK09518 541 DASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTE---FD-RVTWARRVNLSAKTGWHTNRLAPAM 616 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHh---cc-CCCCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999999888888999999999999975322 2222222221 11 1124678999999999999999999
Q ss_pred HHHHHHH
Q psy4665 274 ERTKNML 280 (673)
Q Consensus 274 ~~~~~~~ 280 (673)
.+....+
T Consensus 617 ~~~~~~~ 623 (712)
T PRK09518 617 QEALESW 623 (712)
T ss_pred HHHHHHh
Confidence 8876544
No 71
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.89 E-value=1.5e-22 Score=208.32 Aligned_cols=203 Identities=25% Similarity=0.262 Sum_probs=145.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccc----------------------cccccceeeeEEEEEEEecCCeEEEEEeCCC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVV----------------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~----------------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG 172 (673)
.++|+++||+|+|||||+++|+..... ....++++.......+.+ ++.+++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 479999999999999999999753110 111356677777777877 788999999999
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc-----
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV----- 246 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~----- 246 (673)
|.+|......+++.+|++++|+|++++...++..+++.+...++|+++++||+|+.+++..+..+.+++. +...
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 9999988888999999999999999999999999999988889999999999999888776655555543 2111
Q ss_pred -----cccCCceeEEEeecc---C--CC------C-hhhHHHHHHHHHHHHHh----C-CCCccccc----------CCc
Q psy4665 247 -----EDLGGDIQAVPISAL---T--GT------N-VDNLTEAIERTKNMLLA----Q-GITVEDLG----------GDI 294 (673)
Q Consensus 247 -----~~~~~~~~~v~iSA~---~--g~------g-v~~l~~~i~~~~~~~~~----~-~~~~ee~~----------~~~ 294 (673)
..|.+-++++..-|. . |. . ..++.+.+.+..+.+++ + .++.+++. .-+
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAGELT 240 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcCCEE
Confidence 111122222222221 1 11 0 22444666655555543 2 23444322 334
Q ss_pred eeeeeccccCCCcchhHHHHHHHH
Q psy4665 295 QAVPISALTGTNVDNLTEAIVAQA 318 (673)
Q Consensus 295 ~v~~~Sa~~g~gl~~Ll~~i~~~~ 318 (673)
|++++||.+|.|+..||++|..+.
T Consensus 241 Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 241 PVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEecccccCcCHHHHHHHHHHHC
Confidence 789999999999999999998874
No 72
>KOG0461|consensus
Probab=99.89 E-value=4.1e-22 Score=199.76 Aligned_cols=235 Identities=27% Similarity=0.347 Sum_probs=181.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc-------cccccccceeeeEEEEEEEecCCe--------EEEEEeCCCCCcchhh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS-------VVKSEFGGITQHIGAFVVTLKSGE--------QVTFLDTPGHAAFSNM 179 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~-------~~~~~~~g~T~~~~~~~v~~~~~~--------~i~liDTpG~~~f~~~ 179 (673)
..|++++||.++|||||..+|.... -..+..+|+|.|.+...+....+. +++|+|+|||......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4789999999999999999996532 233456899999988776654333 4699999999999998
Q ss_pred hhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHc--CccccccCCceeE
Q psy4665 180 RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQ--GITVEDLGGDIQA 255 (673)
Q Consensus 180 ~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~--~~~~~~~~~~~~~ 255 (673)
...++...|..++|+|+..|.+.|+.+++-....+....++|+||+|....+. ..+.+..+.. .+....++++.|+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 88899999999999999999999999999887777777999999999853322 1222222222 2223356677889
Q ss_pred EEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEE
Q psy4665 256 VPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMI 335 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V 335 (673)
+++||..|.--+ +++.+|.+.|... ..+++.++.+|+-..|
T Consensus 167 ~~vsa~~G~~~~-------------------------------------~~i~eL~e~l~s~--if~P~Rd~~gpflm~v 207 (522)
T KOG0461|consen 167 VEVSAADGYFKE-------------------------------------EMIQELKEALESR--IFEPKRDEEGPFLMAV 207 (522)
T ss_pred eEEecCCCccch-------------------------------------hHHHHHHHHHHHh--hcCCCcCCCCCeEEEe
Confidence 988887773211 3344455544432 4567888999999999
Q ss_pred EEEEeecCCcEEEEEEeeecEEeeCCEEEe--CCcceEEEEec--ccccceeccCcc
Q psy4665 336 VESKFDTHRGKLATALVQRGTLKKGAIVVA--GQAWAKVRSIS--RKTLINTALGTV 388 (673)
Q Consensus 336 ~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~--g~~~~kvr~i~--~~~v~~a~~G~~ 388 (673)
..++..++.|++.++.|.+|.++.|+.+-. -....||++|. +.++..|.+|+.
T Consensus 208 DHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR 264 (522)
T KOG0461|consen 208 DHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDR 264 (522)
T ss_pred eeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccc
Confidence 999999999999999999999999998853 33457888866 899999999998
No 73
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=194.26 Aligned_cols=239 Identities=27% Similarity=0.333 Sum_probs=171.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCC-Cc-------chhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-AA-------FSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~-~~-------f~~~~~~~ 183 (673)
.+.-.|+|+|.||+|||||+|+|.+.... .+..+.+|++.....+.. ++.++.|+||||. .. .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 34567999999999999999999999854 566778888776666665 6789999999994 21 11223357
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+..+|++++|+|++++....+...++.++..+.|+++++||+|+..... ....+.+... .....++|+||+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-------~~f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-------LPFKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh-------CCcceEEEeecc
Confidence 7999999999999999999888999999887889999999999875433 1222222221 123589999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEee
Q psy4665 262 TGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFD 341 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~ 341 (673)
+|.|++.|.+.+.... ..+...+|....++...+.+...+.++.-+..+..+.+......| +.+..
T Consensus 156 ~g~n~~~L~~~i~~~L-------------peg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeI-e~~~~ 221 (298)
T COG1159 156 KGDNVDTLLEIIKEYL-------------PEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEI-EEFEE 221 (298)
T ss_pred ccCCHHHHHHHHHHhC-------------CCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEE-EEEEe
Confidence 9999999988876542 223344566677788888888999988766656555555554444 44444
Q ss_pred cCCcEE---EEEEeeecEEeeCCEEEeCCcceEEEEec
Q psy4665 342 THRGKL---ATALVQRGTLKKGAIVVAGQAWAKVRSIS 376 (673)
Q Consensus 342 ~~~G~v---~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~ 376 (673)
...|.+ +...|.+-+.|. +++|..+.++|.|-
T Consensus 222 ~~~~~~~I~a~I~Ver~sQK~---IiIGk~G~~iK~IG 256 (298)
T COG1159 222 REKGLLKIHATIYVERESQKG---IIIGKNGAMIKKIG 256 (298)
T ss_pred cCCCeEEEEEEEEEecCCccc---eEECCCcHHHHHHH
Confidence 333433 445566555553 77787777777654
No 74
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=5.1e-21 Score=203.89 Aligned_cols=239 Identities=23% Similarity=0.289 Sum_probs=168.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCc-chhh-------hhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-FSNM-------RSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-f~~~-------~~~~ 183 (673)
.+..+|+++|++|||||||+|+|++..+. .+..+++|.+.....+.+ ++.++.||||||+.. +..+ ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35568999999999999999999988764 344567777766556666 677899999999743 2221 1135
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+..||++++|+|++++.......++..+...+.|.++|+||+|+.+.......+.+... .....++++||++|
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~-------~~~~~i~~iSAktg 201 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN-------HPDSLLFPISALSG 201 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc-------CCCcEEEEEeccCc
Confidence 68999999999999877776667777777788899999999999754333333333322 12357999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecC
Q psy4665 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTH 343 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~ 343 (673)
.|++++++++.+... ...+.++-...|+.....+...|+++.-+..+..+.+... ++..+.+....
T Consensus 202 ~gv~eL~~~L~~~l~-------------~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~-~v~i~~~~~~~ 267 (339)
T PRK15494 202 KNIDGLLEYITSKAK-------------ISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKL-TVQTEKWEDLK 267 (339)
T ss_pred cCHHHHHHHHHHhCC-------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceE-EEEEEEEEEcC
Confidence 999999999866421 2223446677888888899999998876666666655554 44456665543
Q ss_pred CcEE---EEEEeeecEEeeCCEEEeCCcceEEEEec
Q psy4665 344 RGKL---ATALVQRGTLKKGAIVVAGQAWAKVRSIS 376 (673)
Q Consensus 344 ~G~v---~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~ 376 (673)
.|.+ +.+.|.+-+.| .+++|..+..++.|-
T Consensus 268 ~~~~~i~~~i~v~~~sqk---~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 268 DKSVKINQVIVVSRESYK---TIILGKNGSKIKEIG 300 (339)
T ss_pred CCeEEEEEEEEECCCCce---eEEEcCCcHHHHHHH
Confidence 3433 44444444444 377787776666654
No 75
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.5e-21 Score=194.74 Aligned_cols=259 Identities=25% Similarity=0.290 Sum_probs=179.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEec-------------------C------CeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLK-------------------S------GEQV 165 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~-------------------~------~~~i 165 (673)
...||+++||++||||||..+|++-. ....-.+++|+..+.....+. - -+++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 35789999999999999999998743 333334666665554322110 0 1358
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHHHHHHHHHcC
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD-GVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNMLLAQG 243 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~~~~~l~~~~ 243 (673)
.|+|.|||+-....+..++...|+++||++|++ ..++||.+|+..+.-.++. +|++-||+|+... ++..+..++..
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~--E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR--ERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH--HHHHHHHHHHH
Confidence 899999999999999999999999999999998 5789999999999888876 8999999999742 33332222211
Q ss_pred ccc-cccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhh
Q psy4665 244 ITV-EDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMH 322 (673)
Q Consensus 244 ~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~ 322 (673)
.++ ..+..+.|++ |+||..+.+++.|+++|..+ .+.
T Consensus 167 ~FvkGt~Ae~aPII-----------------------------------------PiSA~~~~NIDal~e~i~~~--Ipt 203 (415)
T COG5257 167 EFVKGTVAENAPII-----------------------------------------PISAQHKANIDALIEAIEKY--IPT 203 (415)
T ss_pred HHhcccccCCCcee-----------------------------------------eehhhhccCHHHHHHHHHHh--CCC
Confidence 100 1111234555 55555555666666666554 345
Q ss_pred cccCCCCCeEEEEEEEEeec--------CCcEEEEEEeeecEEeeCCEEEeCC--------------cceEEEEec--cc
Q psy4665 323 LKADYGGPVEAMIVESKFDT--------HRGKLATALVQRGTLKKGAIVVAGQ--------------AWAKVRSIS--RK 378 (673)
Q Consensus 323 ~~~~~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~G~Lk~g~~v~~g~--------------~~~kvr~i~--~~ 378 (673)
+..+++.|+.++|..+|... -.|-+.-+-+.+|.|+.||.+-+-+ -+.+|.+++ +.
T Consensus 204 P~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~ 283 (415)
T COG5257 204 PERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGE 283 (415)
T ss_pred CccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCe
Confidence 56678888999999998763 2567888999999999999985422 135666666 78
Q ss_pred ccceeccCccccccCcEEEeeeCCCCCC---CCCCCeEeecCChhhHH
Q psy4665 379 TLINTALGTVQRTSGTVKISLGFKINPF---CPSGDVDGSVEALLDVF 423 (673)
Q Consensus 379 ~v~~a~~G~~~~~~g~v~~i~gl~~~~~---~~~Gd~l~~~~~~~~~~ 423 (673)
++++|.||-. +++-++|+-.-+ ...|.++....+.+.+.
T Consensus 284 ~~~ea~PGGL------vgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~ 325 (415)
T COG5257 284 DVEEARPGGL------VGVGTKLDPTLTKADALVGQVVGKPGTLPPVW 325 (415)
T ss_pred eeeeccCCce------EEEecccCcchhhhhhhccccccCCCCCCCce
Confidence 9999999999 886677763222 12344555555555553
No 76
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.87 E-value=1.6e-21 Score=202.01 Aligned_cols=201 Identities=28% Similarity=0.374 Sum_probs=141.2
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcccc------------------ccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVK------------------SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~------------------~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
+|+++||+|+|||||+++|+...... ...+++|.......+.+ ++.++++|||||+.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHHH
Confidence 58999999999999999997532110 11245566666666777 678999999999999998
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccc--c--------
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITV--E-------- 247 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~--~-------- 247 (673)
.+..+++.+|++++|+|++++...++...|+.+...++|.++++||+|+.+++.+...+.+++. +... .
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~ 159 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGD 159 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCC
Confidence 8888999999999999999999999999999999999999999999999988777766666553 2110 0
Q ss_pred ccCCceeEEEeecc---CCCC-----------------hhhHHHHHHHHHH----HHHhC-CCCcccccC----------
Q psy4665 248 DLGGDIQAVPISAL---TGTN-----------------VDNLTEAIERTKN----MLLAQ-GITVEDLGG---------- 292 (673)
Q Consensus 248 ~~~~~~~~v~iSA~---~g~g-----------------v~~l~~~i~~~~~----~~~~~-~~~~ee~~~---------- 292 (673)
.+.+-+..+...+. .+.. -.++.+.+.+..+ .++++ .++.+++..
T Consensus 160 ~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~ 239 (268)
T cd04170 160 DFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAGL 239 (268)
T ss_pred ceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 00011111111111 0110 1234444444333 33333 366666533
Q ss_pred CceeeeeccccCCCcchhHHHHHHHH
Q psy4665 293 DIQAVPISALTGTNVDNLTEAIVAQA 318 (673)
Q Consensus 293 ~~~v~~~Sa~~g~gl~~Ll~~i~~~~ 318 (673)
.+|++++||+++.|+..|++.+..+.
T Consensus 240 ~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 240 LVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 33689999999999999999998764
No 77
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=3.1e-21 Score=183.68 Aligned_cols=157 Identities=32% Similarity=0.515 Sum_probs=118.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+|+++|++|+|||||+++|++.. +.....+++|.+.....+.+.++..+++|||||+++|......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 379999999999999999998643 33334567788877666666436789999999999998777778899999999
Q ss_pred EEECCCCChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCc-HHHHHHHHHHcCcccccc-CCceeEEEeeccCCCChhhH
Q psy4665 193 VVAADDGVMEQTVESIRMAREAKV-PIIVAINKIDKPAAD-IERTKNMLLAQGITVEDL-GGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l 269 (673)
|+|++++...++.+.+..+...+. |+++++||+|+.+.. .....+.+.+. +... ....+++++||++|.|++++
T Consensus 81 V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 81 VVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIREL---LAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHH---HHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 999999887888877776666666 999999999997542 11222222221 0110 12468999999999999999
Q ss_pred HHHHHH
Q psy4665 270 TEAIER 275 (673)
Q Consensus 270 ~~~i~~ 275 (673)
++.+..
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 988753
No 78
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=2e-21 Score=190.87 Aligned_cols=151 Identities=32% Similarity=0.363 Sum_probs=117.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc----------------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM 179 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~----------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~ 179 (673)
.+|+++||+|+|||||+++|++.. ......+|+|.+.....+.+ ++.+++|+|||||.+|...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHHH
Confidence 579999999999999999997531 01223578999887777766 6789999999999999998
Q ss_pred hhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEE
Q psy4665 180 RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 180 ~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
+.+++..+|++++|+|+..|...++.+++..+...++| +|+++||||+.... .+...+++.+....+.--..+++++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ii 161 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIV 161 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 88899999999999999999999999999999999998 78999999996321 1112222322211100001258999
Q ss_pred EeeccCCCChh
Q psy4665 257 PISALTGTNVD 267 (673)
Q Consensus 257 ~iSA~~g~gv~ 267 (673)
|+||++|.|..
T Consensus 162 piSa~~g~n~~ 172 (195)
T cd01884 162 RGSALKALEGD 172 (195)
T ss_pred EeeCccccCCC
Confidence 99999999864
No 79
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=9e-22 Score=196.01 Aligned_cols=149 Identities=32% Similarity=0.404 Sum_probs=114.5
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccc-------------------------------cccccceeeeEEEEEEEecCCeEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVV-------------------------------KSEFGGITQHIGAFVVTLKSGEQV 165 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~-------------------------------~~~~~g~T~~~~~~~v~~~~~~~i 165 (673)
+|+++||+|+|||||+++|+...-. ....+|+|.+.....+.+ ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999753211 112378899988888877 67899
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHH---HHHHHHH
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIER---TKNMLLA 241 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~---~~~~l~~ 241 (673)
+|||||||++|...+..++..+|++++|+|++++...++.+.+..+...+.| +|+|+||+|+.+.+.+. ....+..
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 9999999999988777788999999999999999988888888888877765 77799999997644332 2222222
Q ss_pred cCccccccC-CceeEEEeeccCCCChhhH
Q psy4665 242 QGITVEDLG-GDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 242 ~~~~~~~~~-~~~~~v~iSA~~g~gv~~l 269 (673)
. +..++ ...+++++||++|.|+.+.
T Consensus 160 ~---~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 160 F---AAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred H---HHHcCCCCceEEEEeCCCCCCCccC
Confidence 1 11122 1357999999999998764
No 80
>KOG1143|consensus
Probab=99.87 E-value=2.8e-21 Score=195.43 Aligned_cols=360 Identities=21% Similarity=0.256 Sum_probs=249.4
Q ss_pred cccHH-HHHHHhhcchh-HHHHHhhhccc-----ccccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCcccC--cCC-
Q psy4665 29 IYDFQ-VIIDIIQKSDH-LYEVMMYVDNS-----VNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADD--SNG- 97 (673)
Q Consensus 29 ~~~~~-~i~~~~~~~~~-~~~~~~~vd~~-----~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~--~~~- 97 (673)
..|++ +|-|..+++.+ --|++++++.. .|++..+ +.+++.++..|++..|....+++ |.-..+.. ...
T Consensus 74 ~~r~~hlitqMKWRLrEG~GEAiYeIGVeD~G~l~GL~dee-mnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~ 152 (591)
T KOG1143|consen 74 TSRIQHLITQMKWRLREGQGEAIYEIGVEDGGILSGLTDEE-MNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVV 152 (591)
T ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEeeeccCceeeccCHHH-HHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhh
Confidence 34544 67788887776 46777766522 5777777 88889999999999999998888 43222211 111
Q ss_pred cccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCcccccc--------------ccceeeeEEEEEEEe----
Q psy4665 98 KDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE--------------FGGITQHIGAFVVTL---- 159 (673)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~--------------~~g~T~~~~~~~v~~---- 159 (673)
....|+.|.++..++. +|+++|..++|||||+..|+.+...... ..|-|..+....+-+
T Consensus 153 EVLVRKvPd~Qqfiev---RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g 229 (591)
T KOG1143|consen 153 EVLVRKVPDSQQFIEV---RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRG 229 (591)
T ss_pred hhhhhhCCCcccceEE---EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccc
Confidence 2266777777777654 4999999999999999999876543322 112222222111111
Q ss_pred -----c-----------CCeEEEEEeCCCCCcchhhhhhcc--ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEE
Q psy4665 160 -----K-----------SGEQVTFLDTPGHAAFSNMRSRGA--HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVA 221 (673)
Q Consensus 160 -----~-----------~~~~i~liDTpG~~~f~~~~~~~~--~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~Ivv 221 (673)
. +.+-++|+|.+||..|......++ ...|.++||++|..|+.-.|++++..+..+++|++++
T Consensus 230 ~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvl 309 (591)
T KOG1143|consen 230 KVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVL 309 (591)
T ss_pred cccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEE
Confidence 1 223489999999999988877665 5679999999999999999999999999999999999
Q ss_pred EecCCCCCC-cHHHHHHHHH----HcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCcee
Q psy4665 222 INKIDKPAA-DIERTKNMLL----AQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQA 296 (673)
Q Consensus 222 iNK~Dl~~~-~~~~~~~~l~----~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v 296 (673)
++|+|+.+. ..++..+++. ..++. ..|..-.+ -++...+..+ .. -..-.|+
T Consensus 310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~------kvp~~Vt~------~ddAv~Aaq~----~~--------s~nivPi 365 (591)
T KOG1143|consen 310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCT------KVPKRVTT------KDDAVKAAQE----LC--------SGNIVPI 365 (591)
T ss_pred EEeeccccchhHHHHHHHHHHHHhhcCcc------ccceEeec------hHHHHHHHHH----hc--------cCCceeE
Confidence 999999754 2333333333 22321 12222111 1122111111 11 1234578
Q ss_pred eeeccccCCCcchhHHHHHHHHHhh---hcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc----c
Q psy4665 297 VPISALTGTNVDNLTEAIVAQAEIM---HLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----W 369 (673)
Q Consensus 297 ~~~Sa~~g~gl~~Ll~~i~~~~~~~---~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~----~ 369 (673)
|++|..+|+|++.|...|..+++.. +...-...|....|.+.+..|..|+++-+.+.+|.++.|+.+..|+. .
T Consensus 366 f~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F 445 (591)
T KOG1143|consen 366 FAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTF 445 (591)
T ss_pred EEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCce
Confidence 9999999999988777776654311 11111245778899999999999999999999999999999999874 2
Q ss_pred --eEEEEec--ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhH
Q psy4665 370 --AKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDV 422 (673)
Q Consensus 370 --~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~ 422 (673)
-+|-+|+ +.++...+||+. ..+.++.-+.+.++.|.++......+.+
T Consensus 446 ~~itV~sI~Rnr~acrvvraGqa------Aslsl~d~D~~~LR~GMVl~~~~~nP~~ 496 (591)
T KOG1143|consen 446 EKITVGSIRRNRQACRVVRAGQA------ASLSLNDPDGVSLRRGMVLAEIDHNPPV 496 (591)
T ss_pred eEEEeeeeeccccceeeecCccc------eeeeccCCCccchhcceEEeecCCCCce
Confidence 3455577 678889999998 6666676677888999999876655444
No 81
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=3.9e-21 Score=189.35 Aligned_cols=153 Identities=36% Similarity=0.415 Sum_probs=117.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc--Cccccc--------------cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN--TSVVKS--------------EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~--~~~~~~--------------~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
.++|+++|++|+|||||+++|++ ..+... ...++|.......+.+ ++.+++||||||+++|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG 80 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH
Confidence 57899999999999999999987 333221 1245666655555665 678999999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc----CccccccCCcee
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ----GITVEDLGGDIQ 254 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 254 (673)
++..+++.+|++++|+|++++...++..++..+...++|+++++||+|+.........+.+.+. +.... ...++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE--QLDFP 158 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc--cCccC
Confidence 9999999999999999999988888877788777789999999999999765554444433332 11111 12468
Q ss_pred EEEeeccCCCChhhHH
Q psy4665 255 AVPISALTGTNVDNLT 270 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~ 270 (673)
++++||++|.|+.++.
T Consensus 159 iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 159 VLYASAKNGWASLNLE 174 (194)
T ss_pred EEEeehhccccccccc
Confidence 9999999999986654
No 82
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=1.1e-20 Score=183.15 Aligned_cols=155 Identities=35% Similarity=0.464 Sum_probs=117.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccc---------------cccccceeeeEEEEEEEe----cCCeEEEEEeCCCCCcc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVV---------------KSEFGGITQHIGAFVVTL----KSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~---------------~~~~~g~T~~~~~~~v~~----~~~~~i~liDTpG~~~f 176 (673)
++|+++|++|+|||||+++|++.... .....|+|.......+.+ ..+..++||||||+++|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 58999999999999999999874211 011235555544333333 13557889999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCceeE
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGDIQA 255 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 255 (673)
..++.++++.+|++++|+|++++...++...+..+...++|+++++||+|+.+.......+.+.+. +. ...++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------~~~~~ 154 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGL------DPSEA 154 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC------CcccE
Confidence 999999999999999999999988888888887777789999999999999764443333333322 21 11358
Q ss_pred EEeeccCCCChhhHHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~ 276 (673)
+++||++|.|++++++++.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhh
Confidence 999999999999999998754
No 83
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=6.6e-20 Score=189.98 Aligned_cols=235 Identities=24% Similarity=0.275 Sum_probs=155.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch--------hhhhhccccC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS--------NMRSRGAHCT 187 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~--------~~~~~~~~~a 187 (673)
.|+++|++|+|||||+|+|++..+. .+..+++|.+........ ++.++.||||||+.... .....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998754 466678887754443333 56789999999975421 1123467899
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|++++|+|++++...+ ...+..+...+.|+++|+||+|+.. .......+.... ......+++++||++|.|++
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~----~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYA----ILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHH----hhcCCCceEEEecCCCCCHH
Confidence 9999999999865554 5556677778999999999999963 222222222211 11112378999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEE
Q psy4665 268 NLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKL 347 (673)
Q Consensus 268 ~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v 347 (673)
++++++.+.. +++ ...++....+......+...+.++.-+..+..+.+... +..++.+.....|.+
T Consensus 154 ~L~~~l~~~l----~~~---------~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~-~~~~~~~~~~~~~~~ 219 (270)
T TIGR00436 154 FLAAFIEVHL----PEG---------PFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSV-RVEIERKSFNEKGLL 219 (270)
T ss_pred HHHHHHHHhC----CCC---------CCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceE-EEEEEEEEECCCCeE
Confidence 9999987653 211 12235556677777778888888775555555554444 555566655433432
Q ss_pred ---EEEEeeecEEeeCCEEEeCCcceEEEEec
Q psy4665 348 ---ATALVQRGTLKKGAIVVAGQAWAKVRSIS 376 (673)
Q Consensus 348 ---~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~ 376 (673)
+.+.|.+-+.| .+++|..+..++.|.
T Consensus 220 ~i~~~i~v~~~s~k---~iiig~~g~~ik~i~ 248 (270)
T TIGR00436 220 KIHALISVERESQK---KIIIGKNGSMIKAIG 248 (270)
T ss_pred EEEEEEEECcCCce---eEEEcCCcHHHHHHH
Confidence 33444433333 367777666665543
No 84
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=7.7e-21 Score=177.84 Aligned_cols=143 Identities=27% Similarity=0.446 Sum_probs=111.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh------hhcc--ccC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR------SRGA--HCT 187 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~------~~~~--~~a 187 (673)
.+|+++|.||+|||||+|+|++.+...++.||+|.+.....+.+ .+..+.|+||||..++.... ..++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 36999999999999999999999999999999999999888888 67899999999965543221 1232 679
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-----cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-----DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
|++++|+|+++ .++......++.+.++|+++++||+|+... +.+...+.+ .+|++++||++
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------------g~pvi~~sa~~ 145 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------------GVPVIPVSART 145 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------------TS-EEEEBTTT
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------------CCCEEEEEeCC
Confidence 99999999987 566778888889999999999999998432 222222222 46899999999
Q ss_pred CCChhhHHHHH
Q psy4665 263 GTNVDNLTEAI 273 (673)
Q Consensus 263 g~gv~~l~~~i 273 (673)
++|+++|+++|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999998865
No 85
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.85 E-value=5.4e-21 Score=161.04 Aligned_cols=84 Identities=40% Similarity=0.745 Sum_probs=80.4
Q ss_pred EEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCC
Q psy4665 569 GEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEF 648 (673)
Q Consensus 569 g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~ 648 (673)
|+|+|+++|.++ +.++||||+|++|.+++|++++++|+|+++|+|+|.||++++++|+++.+|+||||.|++|+ +|
T Consensus 1 g~~~V~~vf~~~---~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~-d~ 76 (84)
T cd03692 1 GEAEVRAVFKIS---KVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN-DI 76 (84)
T ss_pred CEEEEEEEEECC---CCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc-cC
Confidence 789999999886 34689999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCEEEE
Q psy4665 649 EPGDTIVC 656 (673)
Q Consensus 649 ~~gD~i~~ 656 (673)
++||+|||
T Consensus 77 ~~Gdvi~~ 84 (84)
T cd03692 77 KVGDIIEA 84 (84)
T ss_pred CCCCEEEC
Confidence 99999986
No 86
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=8.3e-21 Score=190.56 Aligned_cols=148 Identities=32% Similarity=0.428 Sum_probs=114.2
Q ss_pred EEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecCCeEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKSGEQV 165 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~~~~i 165 (673)
+|+++||+++|||||+++|+... ......+|+|++.....+.+ ++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 58999999999999999995321 01122578999998888888 78899
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCC-------CChHhhHHHHHHHHHcC-CCEEEEEecCCCCCC--c---H
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD-------GVMEQTVESIRMAREAK-VPIIVAINKIDKPAA--D---I 232 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~-------g~~~q~~~~l~~~~~~~-iP~IvviNK~Dl~~~--~---~ 232 (673)
+|||||||.+|...+..+++.+|++++|+|+++ +...++.+++..+...+ .|+++++||+|+..+ + .
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 999999999999888888999999999999998 45668888888887777 578999999999742 2 2
Q ss_pred HHHHHHHHHcCccccccC---CceeEEEeeccCCCChhh
Q psy4665 233 ERTKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDN 268 (673)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~ 268 (673)
+.+.+.+... +..++ ..++++++||++|.|+++
T Consensus 160 ~~i~~~l~~~---l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 160 DEIKKELSPF---LKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHH---HHHcCCCcCCceEEEeecCcCCCCCc
Confidence 3333333221 11121 247899999999999874
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.6e-20 Score=195.06 Aligned_cols=208 Identities=24% Similarity=0.310 Sum_probs=152.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-----hh----hhhccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-----NM----RSRGAH 185 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-----~~----~~~~~~ 185 (673)
|.|+|+|.||+|||||+|+|++.+ ..+++.||+|+|.......| .+..+.++||+|.+... .. ...++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 889999999999999999999987 45678899999999888988 67889999999986433 21 235678
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
.||+++||+|+..|+++++.+..+.++..++|+|+|+||+|-.. .+....+....| .-+++++||..|.|
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--~e~~~~efyslG--------~g~~~~ISA~Hg~G 152 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--AEELAYEFYSLG--------FGEPVPISAEHGRG 152 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch--hhhhHHHHHhcC--------CCCceEeehhhccC
Confidence 99999999999999999999999999988899999999999762 222233333333 24689999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEE
Q psy4665 266 VDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESK 339 (673)
Q Consensus 266 v~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~ 339 (673)
+.+|.+++.+... .-++....++ ...+ -+.+-...+.|-..|+++|..+. ..+..+..+-.+..|...+
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~-~~~i-kiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~ 221 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEE-TDPI-KIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEF 221 (444)
T ss_pred HHHHHHHHHhhcC-Cccccccccc-CCce-EEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeE
Confidence 9999999887653 2111111111 1112 23556678889999999987542 2233333444444444333
No 88
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=2.6e-20 Score=183.11 Aligned_cols=162 Identities=30% Similarity=0.396 Sum_probs=121.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC-------ccccccccceeeeEEEEEEEec-------------CCeEEEEEeCCCCCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT-------SVVKSEFGGITQHIGAFVVTLK-------------SGEQVTFLDTPGHAA 175 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~-------~~~~~~~~g~T~~~~~~~v~~~-------------~~~~i~liDTpG~~~ 175 (673)
.+|+++|++|+|||||+++|+.. ....+..+++|.+.....+.+. .+..+++||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999872 2233445788888776666553 256899999999988
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHc-Ccccccc-CCc
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQ-GITVEDL-GGD 252 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~-~~~~~~~-~~~ 252 (673)
|......+++.+|++++|+|++++...++.+.+..+...+.|+++++||+|+.... .+...+.+.+. ...+... ...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 87776677888999999999999988888777777777789999999999997432 22222222221 1001111 124
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
.+++++||++|.|+++|++++.+..
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhcc
Confidence 6899999999999999999987654
No 89
>KOG0459|consensus
Probab=99.84 E-value=7.4e-21 Score=194.89 Aligned_cols=279 Identities=27% Similarity=0.312 Sum_probs=205.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEec
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLK 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~ 160 (673)
..+..++.++||+++||||+-..|+... ....+..|-|...+...++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt- 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET- 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe-
Confidence 4567899999999999999988774311 01223457788888888887
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCCCCc-
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKPAAD- 231 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~- 231 (673)
..++++++|+|||..|...+..++.+||+.+||++|..|.. .||+++...++..++. .|+++||||-+..+
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 57899999999999999999999999999999999976543 3899999999998886 89999999987543
Q ss_pred -HHHHHHHHHHcCccccc----cCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCC
Q psy4665 232 -IERTKNMLLAQGITVED----LGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 306 (673)
Q Consensus 232 -~~~~~~~l~~~~~~~~~----~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~g 306 (673)
.+++.+.-.+....+.. -..+..++|+|..+|.++.+..+. .+-|++|..
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s-------------------------~cpwy~gp~ 289 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDS-------------------------VCPWYKGPI 289 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccc-------------------------cCCcccCCc
Confidence 33333322222111111 123578999999999998775431 244566654
Q ss_pred cchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec--ccccce
Q psy4665 307 VDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS--RKTLIN 382 (673)
Q Consensus 307 l~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~--~~~v~~ 382 (673)
.-..++. ++.+....++|+...|.+-+.| .|+++.+++.||+++.|+.++..+.. ..|..|+ ...++.
T Consensus 290 fl~~ld~------l~~~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~ 361 (501)
T KOG0459|consen 290 FLEYLDE------LPHLERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDR 361 (501)
T ss_pred cceehhc------cCcccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeee
Confidence 4333333 2445678899999999888866 68999999999999999999877654 4455566 677899
Q ss_pred eccCccccccCcEEE-eeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHH
Q psy4665 383 TALGTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEALLDVFDTYTSALC 431 (673)
Q Consensus 383 a~~G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~ 431 (673)
+.||+. +.+ +-|+. -..+.+|-+||+.+|+......|.+++.
T Consensus 362 ~~pGen------vk~rlkgie-eedi~~GfiL~~~~n~~~s~~~F~aqi~ 404 (501)
T KOG0459|consen 362 VAPGEN------VKLRLKGIE-EEDISPGFILCSPNNPCKSGRTFDAQIV 404 (501)
T ss_pred ccCCcc------eEEEecccc-hhhccCceEEecCCCccccccEEEEEEE
Confidence 999999 763 34433 2446689999999998666556655544
No 90
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=3.1e-19 Score=170.24 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||++++....+.....+....++....+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 369999999999999999999888766555544444444444442 2346789999999999999999999999999999
Q ss_pred ECCCCChHhhH-HHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHH
Q psy4665 195 AADDGVMEQTV-ESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271 (673)
Q Consensus 195 da~~g~~~q~~-~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 271 (673)
|++++...+.. .++..+... ++|+++++||+|+......+..+.... . ..+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEK-------H--NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHH-------c--CCeEEEEeCCCCCCHHHHHH
Confidence 99987655443 344444443 789999999999853221111111111 1 35789999999999999999
Q ss_pred HHHHHH
Q psy4665 272 AIERTK 277 (673)
Q Consensus 272 ~i~~~~ 277 (673)
.+.+..
T Consensus 152 ~l~~~~ 157 (161)
T cd04124 152 DAIKLA 157 (161)
T ss_pred HHHHHH
Confidence 987654
No 91
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=1.4e-19 Score=179.44 Aligned_cols=158 Identities=27% Similarity=0.334 Sum_probs=116.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEec--------------------------CC----
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLK--------------------------SG---- 162 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~--------------------------~~---- 162 (673)
.+|+++||.|+|||||+++|.+.. ......++.|...+...+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652 122334566665554444331 02
Q ss_pred --eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-ChHhhHHHHHHHHHcCC-CEEEEEecCCCCCCc-HHHHHH
Q psy4665 163 --EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-VMEQTVESIRMAREAKV-PIIVAINKIDKPAAD-IERTKN 237 (673)
Q Consensus 163 --~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~-~~~~~~ 237 (673)
.+++|||||||++|...+..++..+|++++|+|++++ ...++.+.+..+...++ |+++++||+|+.+.. .....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 6899999999999999988899999999999999984 66788888888777776 689999999997532 222222
Q ss_pred HHHHcCcccccc-CCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 238 MLLAQGITVEDL-GGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 238 ~l~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
.+.+.. ..+ ...++++++||++|.|++++++++.+.
T Consensus 161 ~i~~~~---~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 161 QIKKFV---KGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHHH---hccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 232211 111 124689999999999999999998753
No 92
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.6e-20 Score=189.83 Aligned_cols=240 Identities=21% Similarity=0.273 Sum_probs=172.6
Q ss_pred ccccHHHHHHHhhcchhHHHHHh-hhcccccccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCc--------------
Q psy4665 28 VIYDFQVIIDIIQKSDHLYEVMM-YVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSV-------------- 91 (673)
Q Consensus 28 ~~~~~~~i~~~~~~~~~~~~~~~-~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~-------------- 91 (673)
+.|+++.+++-|+.++++++||. .+|...+.+..+++|....|+..+.+++..++...- ..++.
T Consensus 58 ~~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~ 137 (346)
T COG1084 58 VRDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRV 137 (346)
T ss_pred HHHHHHHHHHhCCCccccChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 46888999999999999999999 888888899988899999999998888877744322 21111
Q ss_pred -------ccCcCCcccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeE
Q psy4665 92 -------ADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ 164 (673)
Q Consensus 92 -------~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~ 164 (673)
...+..+...+.....-+..++..|+|+|.|+||+|||||++++++.++...++|++|..+...++.. ++.+
T Consensus 138 aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~-~~~R 216 (346)
T COG1084 138 ASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER-GYLR 216 (346)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec-CCce
Confidence 11111122222223333467788999999999999999999999999999999999999999999987 6779
Q ss_pred EEEEeCCCCCcc--h--hhhh----hcc-ccCCeEEEEEECCC--CCh-HhhHHHHHHHH-HcCCCEEEEEecCCCCCC-
Q psy4665 165 VTFLDTPGHAAF--S--NMRS----RGA-HCTDIVVLVVAADD--GVM-EQTVESIRMAR-EAKVPIIVAINKIDKPAA- 230 (673)
Q Consensus 165 i~liDTpG~~~f--~--~~~~----~~~-~~aD~~vlVvda~~--g~~-~q~~~~l~~~~-~~~iP~IvviNK~Dl~~~- 230 (673)
++++||||.-+- . +..+ .++ +..+++++++|++. |.. +....+++.++ .++.|+++|+||+|..+.
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 999999996321 1 1111 122 66899999999987 322 22234444444 357899999999998742
Q ss_pred cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
..++....+...+ ......+++..+.+.+.+.+.+...
T Consensus 297 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 297 KLEEIEASVLEEG--------GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHHhhc--------cccccceeeeehhhHHHHHHHHHHH
Confidence 3333333333322 2335678888899998888777666
No 93
>KOG0463|consensus
Probab=99.82 E-value=8.2e-21 Score=192.13 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=223.4
Q ss_pred cccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCcccCcCCcc-cccCCCCCCccccCCCCEEEEEeCCCCChhHHHHH
Q psy4665 57 NYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADDSNGKD-VERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDT 134 (673)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~ 134 (673)
|++..+ +-.+..+...++.++...+..++ +..... ...+ ..++++...+.++ .+|+++|.+++|||||+..
T Consensus 80 GLseed-~eas~at~~~~ae~I~Adv~klreR~~~gG---~~~~~liRk~~~~~DF~E---~RVAVVGNVDAGKSTLLGV 152 (641)
T KOG0463|consen 80 GLSEED-LEASAATQLKIAEKIPADVTKLRERKQTGG---GTEVWLIRKPPTEKDFIE---ARVAVVGNVDAGKSTLLGV 152 (641)
T ss_pred CCCHHH-HHHHHHHHHHHHhhCccHhhhhhhHHhcCC---CeeEEEEeCCCCCcccee---EEEEEEecccCCcceeEee
Confidence 444444 33334444566777766655555 211111 1122 4555555555554 4599999999999999999
Q ss_pred HhcCcccccc--------------ccceeeeEEEE-------------------EEEe-----cCCeEEEEEeCCCCCcc
Q psy4665 135 LRNTSVVKSE--------------FGGITQHIGAF-------------------VVTL-----KSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 135 L~~~~~~~~~--------------~~g~T~~~~~~-------------------~v~~-----~~~~~i~liDTpG~~~f 176 (673)
|+++.....+ ..|-|...+.. .+.| +.-+-++|||.+||+.|
T Consensus 153 LTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkY 232 (641)
T KOG0463|consen 153 LTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKY 232 (641)
T ss_pred eeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhh
Confidence 8775433221 01111111111 1111 12234899999999999
Q ss_pred hhhhhhcc--ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccC-Cc
Q psy4665 177 SNMRSRGA--HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLG-GD 252 (673)
Q Consensus 177 ~~~~~~~~--~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~-~~ 252 (673)
......++ +..|..+|++-++.|+.-.|.+++..+..+++|+++|++|+|++.++. ++....+...... -+ ..
T Consensus 233 LKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqEtmKll~rllkS---~gcrK 309 (641)
T KOG0463|consen 233 LKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQETMKLLTRLLKS---PGCRK 309 (641)
T ss_pred hheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcC---CCccc
Confidence 98776555 778999999999999999999999999999999999999999987763 2222222221100 00 01
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
.|++- ... +++..... +++ -.+..|+|.+|..+|.+++.|...|..+... .....+.|+.
T Consensus 310 ~PvlV---rs~---DDVv~~A~---------NF~---Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R--~~~~E~~PAe 369 (641)
T KOG0463|consen 310 LPVLV---RSM---DDVVHAAV---------NFP---SERVCPIFQVSNVTGTNLPLLKMFLNLLSLR--RQLNENDPAE 369 (641)
T ss_pred CcEEE---ecc---cceEEeec---------cCc---cccccceEEeccccCCChHHHHHHHhhcCcc--cccccCCCcc
Confidence 22221 110 00000000 000 1134578899999999998777666655432 2334567889
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc------eEEEEec--ccccceeccCccccccCcEEE-eeeCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW------AKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKI 403 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~------~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~ 403 (673)
..|.+++..++.|+++.+...+|+++-+|.+..|+.. -.|++|| +-++..++.|+. ..+ +-+++
T Consensus 370 FQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQt------ASFALKKIk- 442 (641)
T KOG0463|consen 370 FQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQT------ASFALKKIK- 442 (641)
T ss_pred eeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccch------hhhHhhhcc-
Confidence 9999999999999999999999999999999988752 4677788 557888888887 442 22333
Q ss_pred CCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhh
Q psy4665 404 NPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRR 448 (673)
Q Consensus 404 ~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (673)
-..++.|.++.+..-.+++.+.|++++..+ |....-+.+|+.
T Consensus 443 r~~vRKGMVmVsp~lkPqAsweFEaEILVL---HHPTTIsprYQA 484 (641)
T KOG0463|consen 443 RKDVRKGMVMVSPKLKPQASWEFEAEILVL---HHPTTISPRYQA 484 (641)
T ss_pred hhhhhcceEEecCCCCcceeeEEeeeEEEE---ecCCccCcchhh
Confidence 234668999988776677777787765433 333333345543
No 94
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.9e-19 Score=170.04 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.++|+++|++|+|||||+++|.+..+.....+..+.+.....+.+++. ..+.+|||||++.|..++...++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 478999999999999999999988776655555555555555666322 4789999999999999888889999999999
Q ss_pred EECCCCChHhhH-HHHHHHH---HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTV-ESIRMAR---EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~---~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|+++....+.. .++..+. ..++|+++|+||+|+.... .....+..+..+ ...++++||++|.|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~~~~v 154 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--------MLAVLETSAKESQNV 154 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEEECCCCCCH
Confidence 999986554443 3333333 2478999999999996532 222323222221 246899999999999
Q ss_pred hhHHHHHHH
Q psy4665 267 DNLTEAIER 275 (673)
Q Consensus 267 ~~l~~~i~~ 275 (673)
+++++++.+
T Consensus 155 ~~~~~~l~~ 163 (165)
T cd01864 155 EEAFLLMAT 163 (165)
T ss_pred HHHHHHHHH
Confidence 999998865
No 95
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=4.8e-19 Score=172.67 Aligned_cols=159 Identities=42% Similarity=0.526 Sum_probs=122.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccc----------------cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKS----------------EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR 180 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~----------------~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~ 180 (673)
+|+++|.+|+|||||+++|.+...... ..+++|.+.....+.+ .+..+.||||||+.+|...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999987754432 2345666666566666 46789999999999999888
Q ss_pred hhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC-CcHHHHHHHHHHcCcccc---------ccC
Q psy4665 181 SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA-ADIERTKNMLLAQGITVE---------DLG 250 (673)
Q Consensus 181 ~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~-~~~~~~~~~l~~~~~~~~---------~~~ 250 (673)
..+++.+|++++|+|++++...+..+.+..+...+.|+++++||+|+.. .......+.+.+...... ...
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 8889999999999999998888888888888888999999999999975 333333333332211100 012
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
...+++++||++|.|++++++++...
T Consensus 160 ~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 160 LLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CcceEEEEecccCcCHHHHHHHHHhh
Confidence 35789999999999999999988764
No 96
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=1e-18 Score=172.78 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=117.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.|+++|..|+|||||+.++..+.+...+.++++.++....+.+ ++ ..+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999887777777777776666766 34 56789999999999999999999999999999
Q ss_pred ECCCCChHhhHHHH-HHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|.++....+....| ..+.. .++|+++|+||+|+.... .....+...+. ....++++||++|.|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~--------~~~~~~etSAktg~gV~ 152 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQI--------TGMRFCEASAKDNFNVD 152 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhc--------CCCEEEEecCCCCCCHH
Confidence 99996655554333 33332 368999999999996421 11111111111 12578999999999999
Q ss_pred hHHHHHHHHHH
Q psy4665 268 NLTEAIERTKN 278 (673)
Q Consensus 268 ~l~~~i~~~~~ 278 (673)
++|+++.+...
T Consensus 153 e~F~~l~~~~~ 163 (202)
T cd04120 153 EIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHH
Confidence 99999987553
No 97
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=1.5e-18 Score=182.09 Aligned_cols=238 Identities=27% Similarity=0.320 Sum_probs=158.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch--------hhhhhcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS--------NMRSRGA 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~--------~~~~~~~ 184 (673)
+...|+++|++|||||||+|+|++..+. .+..+.+|.+........ ++.++.|+||||+.... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4567999999999999999999988754 344555665544333333 45789999999975432 2233467
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
..+|++++|+|++++........+..+...+.|+++|+||+|+... .......+.... ...+..+++++||+++.
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~----~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLLEELS----ELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHHHHHH----hhCCCCeEEEecCCCCC
Confidence 8899999999999977777777777777778999999999999732 122222222211 11124679999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCC
Q psy4665 265 NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHR 344 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~ 344 (673)
|++++++++.+... . ....++....+......+...+.++.-...+..+.+... ++..+.+...
T Consensus 158 gv~~L~~~L~~~l~----~---------~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~-~v~~~~~~~~-- 221 (292)
T PRK00089 158 NVDELLDVIAKYLP----E---------GPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSV-AVEIEKFEER-- 221 (292)
T ss_pred CHHHHHHHHHHhCC----C---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceE-EEEEEEEEEC--
Confidence 99999999876531 1 112335556777778888888888776666666665554 4444555543
Q ss_pred cEE---EEEEeeecEEeeCCEEEeCCcceEEEEec
Q psy4665 345 GKL---ATALVQRGTLKKGAIVVAGQAWAKVRSIS 376 (673)
Q Consensus 345 G~v---~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~ 376 (673)
|.+ +.+.|.+-+.+ .+++|..+..++.|.
T Consensus 222 ~~~~i~~~i~v~~~~~k---~i~ig~~g~~i~~i~ 253 (292)
T PRK00089 222 GLVRIEATIYVERDSQK---GIIIGKGGAMLKKIG 253 (292)
T ss_pred CeEEEEEEEEEccCCce---eEEEeCCcHHHHHHH
Confidence 432 33334333332 366777666666554
No 98
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.81 E-value=5.8e-19 Score=169.13 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh---------hhhhcccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN---------MRSRGAHC 186 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~---------~~~~~~~~ 186 (673)
|+|+++|++|+|||||+++|++..+.....+++|.+.....+.+ ++.+++||||||+.+... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 68999999999999999999998876555667777776666655 567999999999843211 11111234
Q ss_pred CCeEEEEEECCCCCh---HhhHHHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 187 TDIVVLVVAADDGVM---EQTVESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 187 aD~~vlVvda~~g~~---~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+|++++|+|+++... .....++..+... +.|+++++||+|+.+.......+.+.. . ...+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-------~-~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEE-------L-EGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhh-------h-ccCceEEEEec
Confidence 689999999987432 2233455555554 799999999999965322111111111 1 13579999999
Q ss_pred CCCChhhHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERT 276 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~ 276 (673)
+|.|++++++++.+.
T Consensus 152 ~~~gi~~l~~~l~~~ 166 (168)
T cd01897 152 TEEGVDEVKNKACEL 166 (168)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999999998764
No 99
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1.3e-18 Score=172.39 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=117.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||+++|.+..+.....+++..++....+.++ ....+.||||||++.|..++...++.+|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 379999999999999999999988776666766666655556653 234688999999999999998899999999999
Q ss_pred EECCCCChHhhHHHH-HHHH-------HcCCCEEEEEecCCCCC---CcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 194 VAADDGVMEQTVESI-RMAR-------EAKVPIIVAINKIDKPA---ADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 194 vda~~g~~~q~~~~l-~~~~-------~~~iP~IvviNK~Dl~~---~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+|.++....+....| ..+. ..++|+++|+||+|+.. ...++..+.....+ ..+++++||++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sak~ 152 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG--------FIGWFETSAKE 152 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC--------CceEEEEeCCC
Confidence 999986554443322 2222 24689999999999963 23444444444332 24789999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
|.|++++++++.+...
T Consensus 153 ~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 153 GINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 100
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=5.2e-19 Score=166.95 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=114.7
Q ss_pred EEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh--------hhhhccccCCe
Q psy4665 119 TIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN--------MRSRGAHCTDI 189 (673)
Q Consensus 119 ~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~--------~~~~~~~~aD~ 189 (673)
+++|++|+|||||+++|.+... .....+++|.+.......+ ++..+.+|||||+..+.. .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999998753 2344567777776666666 678899999999988654 33356788999
Q ss_pred EEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 190 VVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
+++|+|+.++........++.+...+.|+++++||+|+.+.... ...+...+ ..+++++||++|.|++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~--------~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYSLG--------FGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHhcC--------CCCeEEEecccCCCHHHH
Confidence 99999999887777777778888889999999999999765432 22222221 126899999999999999
Q ss_pred HHHHHHH
Q psy4665 270 TEAIERT 276 (673)
Q Consensus 270 ~~~i~~~ 276 (673)
++++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998753
No 101
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.81 E-value=8.4e-19 Score=166.87 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=113.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec---CCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK---SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~---~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+|+++|++|+|||||+++|.+..+.....++++.++....+.+. ....+.+|||||+++|...+...++.+|++++|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 69999999999999999999988776666666666655555542 235789999999999999998899999999999
Q ss_pred EECCCCChHhhHHHHH-HHHH--cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVMEQTVESIR-MARE--AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~~q~~~~l~-~~~~--~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++....+....|. .+.. .++|+++++||+|+.... .++........ .++++++||++|.|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 82 FSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL---------QLPLFRTSVKDDFNVT 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCCCHH
Confidence 9999865544443332 2222 378999999999985422 22332222222 2479999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++++.+
T Consensus 153 ~l~~~l~~ 160 (162)
T cd04106 153 ELFEYLAE 160 (162)
T ss_pred HHHHHHHH
Confidence 99998864
No 102
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=8.3e-19 Score=168.29 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||++++.+..+.....++++.+.....+.+++ ...+.+|||||++.|..++...++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 47899999999999999999999988777666666666555565532 24688999999999999888888999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|++++...+.. .++..+.. .++|+++++||+|+.+. ..++..+..... ..+++++||++|.|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v 153 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---------GIKFLETSAKANINV 153 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCCH
Confidence 999886554333 22333332 36899999999999743 222222222221 357999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 154 ~~~~~~i~~~~ 164 (167)
T cd01867 154 EEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 103
>KOG0084|consensus
Probab=99.81 E-value=6.1e-19 Score=165.63 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=127.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
...++|.++|.+|+|||+|+.++....+...+..++..++....+.+ +|. ++++|||+|+++|+.+...+++.|+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 35688999999999999999999999999999999999999999988 454 688999999999999999999999999
Q ss_pred EEEEECCCCChHhhHHHH-HHHH---HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCcee-EEEeeccC
Q psy4665 191 VLVVAADDGVMEQTVESI-RMAR---EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQ-AVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l-~~~~---~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~-~v~iSA~~ 262 (673)
|+|+|.++..+......| ..+. ..++|.++|+||+|+.+.. .++......+.+ .+ ++++||+.
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~---------~~~f~ETSAK~ 156 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG---------IPIFLETSAKD 156 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC---------CcceeecccCC
Confidence 999999985555443333 3333 3478999999999996542 333333333322 34 99999999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~~~ 281 (673)
+.|+++.|..+......-.
T Consensus 157 ~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 157 STNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 9999999999877665443
No 104
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=4.8e-19 Score=169.55 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=108.4
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccc----cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVV----KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~----~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+|+++|++|+|||||+++|.+.... .......|.......+.+ ++..+.+|||||++.|..++...+..+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 5899999999999999999764321 111223344444455666 57899999999999999998888999999999
Q ss_pred EEECCCCChH-hhHHHHHHHH----HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVME-QTVESIRMAR----EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~-q~~~~l~~~~----~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++.... .....+..+. ..++|+++++||+|+.... ..+..+.+....... .....+++++||++|.|+
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI--GRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccc--cCCceEEEEeeCCCCcCH
Confidence 9999874322 2223333322 2479999999999996542 233333322211000 112468999999999999
Q ss_pred hhHHHHHHH
Q psy4665 267 DNLTEAIER 275 (673)
Q Consensus 267 ~~l~~~i~~ 275 (673)
+++++++.+
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999854
No 105
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=1.3e-18 Score=170.62 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..++|+++|++|+|||||++++.+..+.....+++...+ ...+.++. ...+.+|||||+++|..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 357899999999999999999998877655444443333 23334422 2357789999999999999999999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++....+.. .++..+.. .++|+++++||+|+.+.. ..+........ ..+++++||++|.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~Sak~~~ 153 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF---------GIPFLETSAKQRV 153 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh---------CCEEEEeeCCCCC
Confidence 9999986543332 22233322 378999999999986432 22222222221 2579999999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy4665 265 NVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~ 282 (673)
|++++++++.+.....++
T Consensus 154 gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 154 NVDEAFYELVREIRKYLK 171 (189)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999876654443
No 106
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=1e-18 Score=166.46 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=107.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|++|+|||||++++.+..+.....+.+.... ...+.+ ++ ..+.+|||||+++|..++...++.+|++++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 5899999999999999999998776544444333222 223334 33 4688999999999999999899999999999
Q ss_pred EECCCCChHhhH-HHHHHHH----HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQTV-ESIRMAR----EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~----~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+++....+.. .++..+. ..++|+++++||+|+.... ..+..+..... ..+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 151 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKL---------KIPYIETSAKDRLN 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHc---------CCcEEEeeCCCCCC
Confidence 999985443332 2222222 2478999999999996532 22222222221 25789999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 152 i~~l~~~l~~~ 162 (164)
T cd04145 152 VDKAFHDLVRV 162 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 107
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=1.8e-18 Score=166.09 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=115.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||++++++..+.....+.++.+.....+.... ...+.+|||||++.|..++...++.+|++++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999887666656656666555555532 237889999999999998888899999999999
Q ss_pred ECCCCChHhhHHH-HHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVES-IRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~-l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++....+.... +..+.. .++|+++++||+|+... +.++........ ..+++++||+++.|++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH---------GLIFMETSAKTASNVE 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCCHH
Confidence 9998555444333 333333 37899999999999632 233333333222 3578999999999999
Q ss_pred hHHHHHHHHH
Q psy4665 268 NLTEAIERTK 277 (673)
Q Consensus 268 ~l~~~i~~~~ 277 (673)
+++.++.+..
T Consensus 156 ~~~~~~~~~~ 165 (168)
T cd01866 156 EAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 108
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.80 E-value=4.7e-19 Score=177.04 Aligned_cols=113 Identities=34% Similarity=0.461 Sum_probs=95.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcc----------------ccccccceeeeEEEEEEEec---------CCeEEEEEeC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSV----------------VKSEFGGITQHIGAFVVTLK---------SGEQVTFLDT 170 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~----------------~~~~~~g~T~~~~~~~v~~~---------~~~~i~liDT 170 (673)
++|+++||+++|||||+++|+.... ..+..+|+|.......+.+. .+..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 5899999999999999999975321 11234678877665555442 1568999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~ 228 (673)
|||++|...+..+++.+|++++|+|+.+|...++.++++.+...++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999988899999999999985
No 109
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=2.2e-18 Score=164.60 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=114.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|++..+...+.++++.++....+... ....+++|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 379999999999999999999998877777777766665556553 2347889999999999998888899999999999
Q ss_pred ECCCCChHhhHH-HHHHHHH--------cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 195 AADDGVMEQTVE-SIRMARE--------AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 195 da~~g~~~q~~~-~l~~~~~--------~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
|+++....+... ++..+.. .+.|+++++||+|+... +.++........ ..+++++||++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 151 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK---------GFKYFETSACT 151 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---------CCeEEEEECCC
Confidence 999864433322 2222222 35799999999999631 233333333222 25789999999
Q ss_pred CCChhhHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERT 276 (673)
Q Consensus 263 g~gv~~l~~~i~~~ 276 (673)
|.|++++++++.+.
T Consensus 152 ~~gi~~l~~~l~~~ 165 (168)
T cd04119 152 GEGVNEMFQTLFSS 165 (168)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
No 110
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.80 E-value=1.8e-18 Score=165.63 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=113.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|....+.....+.+..++....+...+ ..++.+|||||++.|...+...++.+|++++|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 5799999999999999999999887665555554555444455522 236789999999999999888899999999999
Q ss_pred ECCCCChHhhHH-HHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVE-SIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~-~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++....+... ++..+.. .+.|+++++||+|+.+. +.++..+..... ..+++++||++|.|++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---------GLLFLECSAKTGENVE 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCEEEEEECCCCCCHH
Confidence 999865544433 3333322 46789999999999653 223333333222 3589999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++.+...
T Consensus 154 e~f~~l~~~ 162 (166)
T cd04122 154 DAFLETAKK 162 (166)
T ss_pred HHHHHHHHH
Confidence 999888654
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=8.6e-19 Score=169.22 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=109.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+.++|+++|++|+|||||+++|.+..+. ...+ |..+....+.+ ++.++.+|||||++.|..++...+..+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~--t~g~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISP--TLGFQIKTLEY-EGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCC--ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 35578999999999999999999977442 2222 22233344555 47889999999999999888888999999999
Q ss_pred EEECCCCChH-hhHHHHHHH----HHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVME-QTVESIRMA----REAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~-q~~~~l~~~----~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++.... .....+..+ ...++|+++++||+|+.+.. .++..+.+..... ....++++++||++|.|+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI----SSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc----CCCceEEEeccCCCCcCH
Confidence 9999985322 222223222 22578999999999997542 3333333221110 112468999999999999
Q ss_pred hhHHHHHH
Q psy4665 267 DNLTEAIE 274 (673)
Q Consensus 267 ~~l~~~i~ 274 (673)
+++++++.
T Consensus 164 ~~l~~~l~ 171 (173)
T cd04154 164 LQGIDWLV 171 (173)
T ss_pred HHHHHHHh
Confidence 99999875
No 112
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=2.2e-18 Score=164.96 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=115.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||++++.+..+.....++++.+.....+...+ ...+.+|||||++.|..++...++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 5799999999999999999999887766666666666655665532 236889999999999999888899999999999
Q ss_pred ECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++....... +++..+.. .+.|+++++||+|+.... .++........ .++++++||++|.|++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---------GIPFLETSAKNATNVE 153 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCcCHH
Confidence 99985433332 23333333 368999999999986432 22222222221 3589999999999999
Q ss_pred hHHHHHHHHH
Q psy4665 268 NLTEAIERTK 277 (673)
Q Consensus 268 ~l~~~i~~~~ 277 (673)
++++++.+..
T Consensus 154 ~~~~~i~~~~ 163 (166)
T cd01869 154 QAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 113
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=5.4e-19 Score=167.27 Aligned_cols=147 Identities=27% Similarity=0.361 Sum_probs=111.8
Q ss_pred EEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh------hhhcc--ccCCeEE
Q psy4665 120 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM------RSRGA--HCTDIVV 191 (673)
Q Consensus 120 ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~------~~~~~--~~aD~~v 191 (673)
++|++|+|||||++++.+......+.+++|.+.....+.+ ++..+.+|||||+.+|... +...+ ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 5899999999999999998777777788998887777777 5678999999999887643 33344 4899999
Q ss_pred EEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 192 LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+|+|+++. .+....+..+...++|+++++||+|+.+... ....+.+... + ..+++++||.+|.|+++++
T Consensus 80 ~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 80 NVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL------L--GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh------h--CCCeEEEEccCCCCHHHHH
Confidence 99999874 2334455566778999999999999965421 1111122111 1 2579999999999999999
Q ss_pred HHHHHHH
Q psy4665 271 EAIERTK 277 (673)
Q Consensus 271 ~~i~~~~ 277 (673)
+++.+..
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9987653
No 114
>KOG0094|consensus
Probab=99.80 E-value=1.3e-18 Score=162.62 Aligned_cols=155 Identities=20% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|..++|||||+++++...+...+.++|..++-..++.+.+ ..+++||||+|+|+|+.+...+++.+.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 457899999999999999999999999999999999999988888743 2378899999999999999999999999999
Q ss_pred EEECCC-CChHhhHHHHHHHHHcC----CCEEEEEecCCCCCCcH---HHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADD-GVMEQTVESIRMAREAK----VPIIVAINKIDKPAADI---ERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~-g~~~q~~~~l~~~~~~~----iP~IvviNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|.++ ...+++..+++.++..+ +-+++|+||.||.+... ++-....++. ...++++||+.|+
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel---------~a~f~etsak~g~ 171 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL---------NAEFIETSAKAGE 171 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh---------CcEEEEecccCCC
Confidence 999998 45567777777776542 33788999999975421 1111112222 3579999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|+.++|..|....
T Consensus 172 NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 172 NVKQLFRRIAAAL 184 (221)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999987654
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=2.4e-18 Score=163.54 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=116.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|++|+|||||+++|++..+...+.++++.++....+.+++. .++.+|||||++.|..++...++.+|++++|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 7999999999999999999999888887888888887777776322 368899999999999998888999999999999
Q ss_pred CCCCChHhhH-HHHHHHH-Hc--CCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 196 ADDGVMEQTV-ESIRMAR-EA--KVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 196 a~~g~~~q~~-~~l~~~~-~~--~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
++++...+.. .++..+. .. +.|+++++||+|+.... .++........ ..+++++||+++.|+++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL---------NAMFIETSAKAGHNVKE 152 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh---------CCEEEEEeCCCCCCHHH
Confidence 9986544333 3333332 23 48999999999995322 22222222221 36799999999999999
Q ss_pred HHHHHHHH
Q psy4665 269 LTEAIERT 276 (673)
Q Consensus 269 l~~~i~~~ 276 (673)
+++++.+.
T Consensus 153 l~~~i~~~ 160 (161)
T cd01861 153 LFRKIASA 160 (161)
T ss_pred HHHHHHHh
Confidence 99998653
No 116
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.80 E-value=9.2e-19 Score=166.13 Aligned_cols=150 Identities=20% Similarity=0.209 Sum_probs=108.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|++|+|||||+++|.+..+.....+++.... ...+.. ++ ..+.+|||||++.|..++..+++.+|++++|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999998877655544433222 333444 33 3577899999999999999999999999999
Q ss_pred EECCCCChHhhH-HHHHHHH----HcCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTV-ESIRMAR----EAKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~----~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|.++....+.. ..+..+. ..++|+++++||+|+.+.. ..+..+..... ..+++++||++|.|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gi 150 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY---------GIPYIETSAKTRQGV 150 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh---------CCeEEEecCCCCCCH
Confidence 999985433332 2223332 2478999999999996532 22222222221 357999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++.+.
T Consensus 151 ~~l~~~l~~~ 160 (162)
T cd04138 151 EEAFYTLVRE 160 (162)
T ss_pred HHHHHHHHHH
Confidence 9999998653
No 117
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.80 E-value=1.8e-18 Score=164.56 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=115.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....+..+.+.....+..+. ...+.||||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 3799999999999999999999887776666666666555555532 246889999999999998888899999999999
Q ss_pred ECCCCChHhhHHHH-HHH---HHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMA---REAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~---~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|++++...+....| ..+ ...++|+++++||+|+... +..+........ ..+++++||+++.|++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN---------GLLFLETSALTGENVE 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc---------CCEEEEEECCCCCCHH
Confidence 99996555443333 322 2357899999999999642 222333333322 2579999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++++.+
T Consensus 152 ~~~~~~~~ 159 (161)
T cd04113 152 EAFLKCAR 159 (161)
T ss_pred HHHHHHHH
Confidence 99999865
No 118
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.80 E-value=1.8e-18 Score=165.62 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=107.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||++++++..+.....+.+.... ...+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 4799999999999999999999887655444333222 2222221 2346889999999999998888889999999999
Q ss_pred ECCCCChHhh-HHHHHHHHH------cCCCEEEEEecCCCCCC-c--HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 195 AADDGVMEQT-VESIRMARE------AKVPIIVAINKIDKPAA-D--IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 195 da~~g~~~q~-~~~l~~~~~------~~iP~IvviNK~Dl~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|.++...... ..++..+.. .++|+++|+||+|+... . .......... ..++++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~---------~~~~~~e~SA~~g~ 151 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE---------WNCAFMETSAKTNH 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH---------hCCcEEEeecCCCC
Confidence 9998655433 333333333 46899999999999642 1 1111111111 13578999999999
Q ss_pred ChhhHHHHHHH
Q psy4665 265 NVDNLTEAIER 275 (673)
Q Consensus 265 gv~~l~~~i~~ 275 (673)
|++++++++.+
T Consensus 152 ~v~~~f~~l~~ 162 (165)
T cd04140 152 NVQELFQELLN 162 (165)
T ss_pred CHHHHHHHHHh
Confidence 99999999864
No 119
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.80 E-value=2.1e-18 Score=164.72 Aligned_cols=152 Identities=20% Similarity=0.148 Sum_probs=108.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||++++..+.+.....+++.... ...+...+ ...+.+|||||++.|..++...++.+|++++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 5799999999999999999998766544444433222 23444422 235679999999999999999999999999999
Q ss_pred ECCCCChHhh-HHHHHHHH----HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQT-VESIRMAR----EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q~-~~~l~~~~----~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|.++....+. ..++..+. ..++|+++++||+|+.+.. .....+..+.. ..+++++||++|.|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v 151 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW---------GCAFLETSAKAKINV 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh---------CCEEEEeeCCCCCCH
Confidence 9987544332 22333332 2468999999999996431 22222222221 257999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 152 ~~~~~~l~~~l 162 (164)
T cd04175 152 NEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 120
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.6e-18 Score=170.07 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=112.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
+|+++|.+|+|||||+++|..+.+.....+.++... ...+.+ ++. .+.||||||++.|..++..+++.+|++++|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 489999999999999999998877655444443222 223334 343 5889999999999999999999999999999
Q ss_pred ECCCCChHhhH-HHHHHHHH------cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 195 AADDGVMEQTV-ESIRMARE------AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 195 da~~g~~~q~~-~~l~~~~~------~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|.++....... .++..+.. .++|+++++||+|+.... .....+..... .++++++||++|.
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~SAk~~~ 149 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL---------GCEFIEASAKTNV 149 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh---------CCEEEEecCCCCC
Confidence 99886544332 33333322 368999999999996421 12222211111 2579999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCC
Q psy4665 265 NVDNLTEAIERTKNMLLAQG 284 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~~~ 284 (673)
|++++++++.+.......++
T Consensus 150 ~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 150 NVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred CHHHHHHHHHHHHHHhhccc
Confidence 99999999987765544433
No 121
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=2.3e-18 Score=165.21 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=111.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||+++++...+.....+++..+.....+... ....+.+|||||++.|..++...+..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 379999999999999999999877665555554444444444432 2246889999999999988888889999999999
Q ss_pred ECCCCChHhhHHHH-HHHHHc--CCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 195 AADDGVMEQTVESI-RMAREA--KVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~~~--~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
|.+++...+....| ..+... ++|+++++||+|+..... .+..+.... ...+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK---------KNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH---------cCCEEEEEeCCCCCChHHHH
Confidence 99986655444322 333322 799999999999974322 111111111 14679999999999999999
Q ss_pred HHHHHHH
Q psy4665 271 EAIERTK 277 (673)
Q Consensus 271 ~~i~~~~ 277 (673)
+++.+..
T Consensus 152 ~~l~~~~ 158 (166)
T cd00877 152 LWLARKL 158 (166)
T ss_pred HHHHHHH
Confidence 9997654
No 122
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.80 E-value=2.5e-18 Score=164.64 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+..+. ...+.+|||||++.|..++...++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 5799999999999999999999887666556555554444444421 247889999999999999988999999999999
Q ss_pred ECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|.++....+. .+++..+.. .+.|+++++||+|+.+.. .++..+..... ..+++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gv~ 152 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------GFEFFEASAKENINVK 152 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------CCEEEEEECCCCCCHH
Confidence 9987543332 233334433 367899999999996532 22222222221 2479999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++++...
T Consensus 153 ~l~~~l~~~ 161 (165)
T cd01865 153 QVFERLVDI 161 (165)
T ss_pred HHHHHHHHH
Confidence 999998764
No 123
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.79 E-value=1.7e-18 Score=167.25 Aligned_cols=152 Identities=17% Similarity=0.237 Sum_probs=112.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|.+|+|||||++++....+.....+.+...+ ...+.. ++ ..+.||||||.+.|..++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 35799999999999999999998887655544443333 223444 34 468899999999999999999999999999
Q ss_pred EEECCCCChHhhHHHH-HHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQTVESI-RMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l-~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|.++....+....| ..+.. .++|+++|+||+|+.+. +.++..+..+.. .++++++||++|.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~~~~ 150 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---------NCPFFETSAALRH 150 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---------CCEEEEEecCCCC
Confidence 9999997665554322 22222 46899999999998642 222222222221 3689999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|++++|+++.+..
T Consensus 151 ~v~~~f~~l~~~~ 163 (172)
T cd04141 151 YIDDAFHGLVREI 163 (172)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987643
No 124
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.79 E-value=1.9e-18 Score=167.28 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=113.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++++|||||+.++..+.+...+.+++..... ..+..+ ...++.+|||+|++.|..++..+++.+|++|+|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 47999999999999999999999887666665544332 234442 1246889999999999999998999999999999
Q ss_pred ECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCCc-------------HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 195 AADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAAD-------------IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 195 da~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
|.++....+.. .++..+.. .++|+++|+||+|+.+.. .++..+..... +..++++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------~~~~~~E 152 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI--------GAAAYIE 152 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc--------CCCEEEE
Confidence 99986665543 34444443 378999999999995421 12222222221 1236999
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||++|.|++++|+.+.+..
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CCCCcccCHHHHHHHHHHHH
Confidence 99999999999999988753
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.6e-18 Score=191.59 Aligned_cols=189 Identities=23% Similarity=0.349 Sum_probs=137.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc--------chhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA--------FSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~--------f~~~~~~~ 183 (673)
...|+|+|+|++|||||||+|+|++... .....+|+|.+.....+.+ ++..+.||||||++. +...+..+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3468999999999999999999998764 4566788998887777777 678899999999863 33334457
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+..||++++|+|++++.......++..+...++|+++|+||+|+.....+. ......+. ...+++||++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~--~~~~~~g~--------~~~~~iSA~~g 184 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADA--AALWSLGL--------GEPHPVSALHG 184 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhh--HHHHhcCC--------CCeEEEEcCCC
Confidence 789999999999999988777778888888899999999999996532211 11112221 13479999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
.|++++++++.+......+ . ++.......+.+=...|.|-..|+..+..
T Consensus 185 ~gi~eL~~~i~~~l~~~~~-~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~ 233 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPR-V---GSASGGPRRVALVGKPNVGKSSLLNKLAG 233 (472)
T ss_pred CCcHHHHHHHHhhcccccc-c---ccccccceEEEEECCCCCCHHHHHHHHhC
Confidence 9999999998776532111 0 00011122233335678898999988864
No 126
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.79 E-value=2.4e-18 Score=164.18 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....++++ +.....+..+. ...+.+|||||+++|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 3799999999999999999998876655444333 22223333422 246789999999999999988899999999999
Q ss_pred ECCCCChHhhHHH-HHHHH----HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQTVES-IRMAR----EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q~~~~-l~~~~----~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+++....+.... +..+. ..++|+++++||+|+.... .+......... ..+++++||++|.|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~i 150 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW---------GCPFLETSAKERVNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc---------CCEEEEeecCCCCCH
Confidence 9998544333222 22222 2368999999999996432 12222222221 358999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 151 ~~l~~~l~~~~ 161 (164)
T smart00173 151 DEAFYDLVREI 161 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 127
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.79 E-value=2e-18 Score=164.35 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=107.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
++|+++|.+|+|||||++++....+.....+++. +.....+..++ ...+.||||||++.|..++...++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 5799999999999999999998876655444433 22233344422 235778999999999999988899999999999
Q ss_pred ECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|.++...... ..++..+.. .++|+++++||+|+.+.. .+....... .+ ..+++++||++|.|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~~~v 151 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-------QW--GCPFYETSAKSKINV 151 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-------Hc--CCeEEEecCCCCCCH
Confidence 9998544333 233333332 368999999999996422 111111111 11 268999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++.+.
T Consensus 152 ~~l~~~l~~~ 161 (163)
T cd04136 152 DEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 128
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.79 E-value=4.9e-18 Score=161.72 Aligned_cols=153 Identities=19% Similarity=0.208 Sum_probs=116.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....++++.+.....+.+... ..+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 37999999999999999999998876666667776666666666322 47889999999999999888999999999999
Q ss_pred ECCCCChHhhHHHH-HHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++....+....| ..+.. .++|+++++||+|+... +.+...+..... .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~i~ 151 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH---------GLPFFETSAKTNTNVE 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc---------CCeEEEEeCCCCCCHH
Confidence 99986555443323 33332 46899999999998642 233333333222 2569999999999999
Q ss_pred hHHHHHHHHH
Q psy4665 268 NLTEAIERTK 277 (673)
Q Consensus 268 ~l~~~i~~~~ 277 (673)
++++++.+..
T Consensus 152 ~l~~~i~~~~ 161 (164)
T smart00175 152 EAFEELAREI 161 (164)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 129
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=1.4e-18 Score=174.46 Aligned_cols=158 Identities=28% Similarity=0.415 Sum_probs=115.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcccccc--------------ccceeeeEEE------------------------EEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSE--------------FGGITQHIGA------------------------FVVT 158 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~--------------~~g~T~~~~~------------------------~~v~ 158 (673)
+|+++|+.++|||||+++|....+.... ..|.|..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4889999999999999999865432211 1233321111 1122
Q ss_pred ecCCeEEEEEeCCCCCcchhhhhhccc--cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHH
Q psy4665 159 LKSGEQVTFLDTPGHAAFSNMRSRGAH--CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERT 235 (673)
Q Consensus 159 ~~~~~~i~liDTpG~~~f~~~~~~~~~--~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~ 235 (673)
. +++.++|+|||||++|.....+++. .+|++++|+|++++...++.+++..+...++|+++++||+|+.+.+ ....
T Consensus 81 ~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 81 K-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred e-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 2 4678999999999999888777764 7999999999999999999999999999999999999999986432 3333
Q ss_pred HHHHHHc----Ccc---c--------------cccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 236 KNMLLAQ----GIT---V--------------EDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 236 ~~~l~~~----~~~---~--------------~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
...+.+. +.. . ..+...+|++++||.+|+|+++|.+.|..
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3333322 110 0 12344569999999999999999988754
No 130
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.79 E-value=3.8e-18 Score=163.02 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=115.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|.+|+|||||+++|.+..+.....++++.++....+..++. ..+.+|||||++.|..++...++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 368999999999999999999998877776777777766666666322 3688999999999999988888999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|+++....+.. +++..+.. .++|+++++||+|+.... .++........ ..+++++||++|.|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v 153 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN---------GLSFIETSALDGTNV 153 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHc---------CCEEEEEECCCCCCH
Confidence 999975444333 23333333 358999999999996432 22222222211 357999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++...
T Consensus 154 ~~l~~~l~~~ 163 (165)
T cd01868 154 EEAFKQLLTE 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 131
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=2.2e-18 Score=163.88 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=105.5
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|.+|+|||||+++|.+... .....+++. .....+.. .+.++.+|||||++.|..++..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEK-GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEE-CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 489999999999999999998753 222223332 22223333 57789999999999999999988999999999999
Q ss_pred CCCCChHh-hHHHHHHHH------HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 196 ADDGVMEQ-TVESIRMAR------EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 196 a~~g~~~q-~~~~l~~~~------~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
++++.... ....+..+. ..++|+++++||+|+.+.. ..+..+.+..... .....+++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~----~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI----KDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc----cCceEEEEEeeCCCCCchH
Confidence 99864332 122222221 2478999999999997643 2222222211000 1113468999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++++.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999853
No 132
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=4e-18 Score=163.31 Aligned_cols=158 Identities=26% Similarity=0.357 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch----------hh-hh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS----------NM-RS 181 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~----------~~-~~ 181 (673)
++++|+++|++|+|||||+++|.+... .....+++|.......+.. ++..+++|||||+.... .. ..
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 367899999999999999999998763 3445567776665555655 56789999999975441 11 12
Q ss_pred hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
..+..+|++++|+|++++...+....+..+...+.|+++++||+|+.+.. .+...+.+.+... . ....+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP---F-LDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc---c-ccCCceEEE
Confidence 34578999999999999888877777888877899999999999997652 2233333333211 0 123689999
Q ss_pred eccCCCChhhHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERT 276 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~ 276 (673)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988653
No 133
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.1e-18 Score=171.27 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=112.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
++|+++|.+|+|||||+++|.++.+.....+++..... ..+..+ ....+.||||||++.|..++..+++.+|++++|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 47999999999999999999998876655555544432 223332 1247889999999999988888889999999999
Q ss_pred ECCCCChHhhHH--HHHHHHH--cCCCEEEEEecCCCCCCcHHH-HHHHH------HHcCccccccCCceeEEEeeccCC
Q psy4665 195 AADDGVMEQTVE--SIRMARE--AKVPIIVAINKIDKPAADIER-TKNML------LAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 195 da~~g~~~q~~~--~l~~~~~--~~iP~IvviNK~Dl~~~~~~~-~~~~l------~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
|.++....+..+ ++..+.. .+.|+++|+||+|+....... ..... .+.+..+....+.++++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999866555432 3444443 378999999999996543211 00000 000001111112367999999999
Q ss_pred CChhhHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKN 278 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~ 278 (673)
.|++++|+++.+...
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987643
No 134
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.79 E-value=3.3e-18 Score=165.61 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||+.++..+.+...+.|++...+. ..+.. ++ .++.||||||++.|..++..+++.+|++++|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 57999999999999999999998886666666554443 23444 34 4678999999999999888889999999999
Q ss_pred EECCCCChHhhHH--HHHHHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHHc---------CccccccCCceeEEEeec
Q psy4665 194 VAADDGVMEQTVE--SIRMARE--AKVPIIVAINKIDKPAADIERTKNMLLAQ---------GITVEDLGGDIQAVPISA 260 (673)
Q Consensus 194 vda~~g~~~q~~~--~l~~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~v~iSA 260 (673)
+|.++....+... ++..+.. .++|+++++||+|+.+... ..+.+... +..+....+...++++||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh--hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 9999865554432 3333332 3689999999999864311 11111110 000001112368999999
Q ss_pred cCCCChhhHHHHHHHH
Q psy4665 261 LTGTNVDNLTEAIERT 276 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~ 276 (673)
++|.|++++|+.+...
T Consensus 158 ~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 158 LTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988663
No 135
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=3.3e-18 Score=166.04 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=115.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-----------CCeEEEEEeCCCCCcchhhhhhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-----------SGEQVTFLDTPGHAAFSNMRSRG 183 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-----------~~~~i~liDTpG~~~f~~~~~~~ 183 (673)
..+|+++|.+|+|||||++++....+.....++++.++....+.+. ....+.||||||++.|..++...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4689999999999999999999988776666666655554444442 12468899999999999999989
Q ss_pred cccCCeEEEEEECCCCChHhhHH-HHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeE
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVE-SIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~-~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
++.+|++++|+|+++....+... ++..+.. .+.|+++|+||+|+.+. ..++..+...+. .+++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~ 154 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY---------GIPY 154 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc---------CCeE
Confidence 99999999999999855444433 2333333 36789999999999643 223333333222 3579
Q ss_pred EEeeccCCCChhhHHHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+++||++|.|++++++++.+..
T Consensus 155 ~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 155 FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987643
No 136
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=4.9e-18 Score=166.25 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
...+|+++|..++|||||+.++....+...+.+.++.++....+.. ++ ..+.||||||++.|..++...++.+|+++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4578999999999999999999988776655556666665555655 34 46789999999999999988889999999
Q ss_pred EEEECCCCChHhhHH-HHHHHHH--cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQTVE-SIRMARE--AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q~~~-~l~~~~~--~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
||+|.++....+... ++..+.. .+.|+|+++||+|+... ..++..+..+.. ..+++++||++|.|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---------~~~~~e~SAk~g~~ 154 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---------GMTFFEVSPLCNFN 154 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---------CCEEEEecCCCCCC
Confidence 999999865544433 3344433 47899999999999642 233333333322 35799999999999
Q ss_pred hhhHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKN 278 (673)
Q Consensus 266 v~~l~~~i~~~~~ 278 (673)
++++|+++.+...
T Consensus 155 V~~~F~~l~~~i~ 167 (189)
T cd04121 155 ITESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986543
No 137
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.79 E-value=4.3e-18 Score=167.23 Aligned_cols=159 Identities=17% Similarity=0.186 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|..++|||||+.++..+.+...+.+++...+. ..+.. ++ ..+.+|||||++.|..++..+++.+|++|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 468999999999999999999998887666665544332 22334 33 468899999999999999989999999999
Q ss_pred EEECCCCChHhhHH-HH-HHHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHHcC---------ccccccCCceeEEEee
Q psy4665 193 VVAADDGVMEQTVE-SI-RMARE--AKVPIIVAINKIDKPAADIERTKNMLLAQG---------ITVEDLGGDIQAVPIS 259 (673)
Q Consensus 193 Vvda~~g~~~q~~~-~l-~~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~v~iS 259 (673)
|+|.++....+... .| ..+.. .++|+++|+||+|+.+.... .+.+.+.. ..+....+..+++++|
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~--~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT--LKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh--HHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999866554442 23 22322 47899999999999643210 01111100 0000111225799999
Q ss_pred ccCCCChhhHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~ 277 (673)
|++|.|++++|+++.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998654
No 138
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=2.4e-18 Score=165.43 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=109.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+..+|+++|++|+|||||+++|....+. ...++++.+. ..+.. .+..+.+|||||++.|..++...++.+|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~--~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccce--EEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4578999999999999999999876653 2334443333 23334 567899999999999999888888999999999
Q ss_pred EECCCCC-hHhhHHHHHHHH----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGV-MEQTVESIRMAR----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~-~~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++.. .....+.+.... ..++|+++++||+|+.+. +.+++.+.+..... .....+++++||++|.|++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI----RDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc----CCCcEEEEEeeCCCCCChH
Confidence 9999843 223333343332 236899999999999653 33333333211110 1123578999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
+++++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999853
No 139
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=4.8e-18 Score=170.12 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=117.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC--CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS--GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~--~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|++|+|||||+++|.+..+...+.++++.++....+.+++ ...+.||||||++.|..++...++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 3699999999999999999999888777778888787766677643 35788999999999999999899999999999
Q ss_pred EECCCCChHhhHH-HHHHHHH------cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 194 VAADDGVMEQTVE-SIRMARE------AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 194 vda~~g~~~q~~~-~l~~~~~------~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+++....+..+ ++..+.. .+.|+++|+||+|+.+.. .++..+..... ..+++++||++|
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~---------~~~~~~iSAktg 151 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN---------GMESCLVSAKTG 151 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECCCC
Confidence 9999854443332 3333332 245799999999996421 12222222222 246899999999
Q ss_pred CChhhHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKN 278 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~ 278 (673)
.|++++++++.....
T Consensus 152 ~gv~~lf~~l~~~l~ 166 (215)
T cd04109 152 DRVNLLFQQLAAELL 166 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999977643
No 140
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=6.8e-18 Score=162.16 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=112.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....+..+.++....+.+++. ..+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 37999999999999999999998876555555555555455555322 35679999999999999988999999999999
Q ss_pred ECCCCChHhhHHHHH-H-HHH------cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 195 AADDGVMEQTVESIR-M-ARE------AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 195 da~~g~~~q~~~~l~-~-~~~------~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
|++++...+....|. . +.. .++|+++++||+|+... ..+.........+ ..+++++||++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 152 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--------NIPYFETSAKEA 152 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--------CceEEEEECCCC
Confidence 999865433332221 1 111 27899999999999732 2333333333322 368999999999
Q ss_pred CChhhHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTK 277 (673)
Q Consensus 264 ~gv~~l~~~i~~~~ 277 (673)
.|++++++++.+..
T Consensus 153 ~gv~~l~~~i~~~~ 166 (172)
T cd01862 153 INVEQAFETIARKA 166 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=2e-18 Score=169.17 Aligned_cols=160 Identities=22% Similarity=0.221 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+.++|+++|++|+|||||+++|.+..+. ...+ |.......+.+ ++..+.+|||||++.|...+..++..+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~--T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVP--TLHPTSEELTI-GNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--ccCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45688999999999999999999987653 2222 33334445556 57889999999999998888888899999999
Q ss_pred EEECCCCCh-HhhHHHHHHHH----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccc-------cccCCceeEEEee
Q psy4665 193 VVAADDGVM-EQTVESIRMAR----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITV-------EDLGGDIQAVPIS 259 (673)
Q Consensus 193 Vvda~~g~~-~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~-------~~~~~~~~~v~iS 259 (673)
|+|+++... ......+..+. ..+.|+++++||+|+... +.++..+.+....... +......+++++|
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 999987422 22223333322 246899999999999653 3444444443221110 1112346799999
Q ss_pred ccCCCChhhHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERT 276 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~ 276 (673)
|++|+|++++++++.+.
T Consensus 173 a~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 173 VVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ecCCCChHHHHHHHHhh
Confidence 99999999999998653
No 142
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=5.9e-18 Score=165.44 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=113.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||+++|.+..+...+.+++..++.. .+...++ ..+.+|||||++.|..++...+..+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 379999999999999999999988776665555444432 3333222 3688999999999999988889999999999
Q ss_pred EECCCCChHhhHH--HHHHHHH--cCCCEEEEEecCCCCCCc-------HHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 194 VAADDGVMEQTVE--SIRMARE--AKVPIIVAINKIDKPAAD-------IERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 194 vda~~g~~~q~~~--~l~~~~~--~~iP~IvviNK~Dl~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+|+++....+... ++..+.. .++|+++|+||+|+.... ..+..+.....+ ..+++++||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~e~Sa~~ 151 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG--------AFAYLECSAKT 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--------CcEEEEccCCC
Confidence 9999865544432 2223322 478999999999996432 222222222221 13789999999
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNML 280 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~~ 280 (673)
|.|++++++.+.+.....
T Consensus 152 ~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 152 MENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999998765443
No 143
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.78 E-value=4.3e-18 Score=165.72 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|.+++|||||+.++....+...+.+++...+. ..+..++ ...+.+|||+|.+.|..++..+++.+|++++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 3467999999999999999999998887666665544432 3344422 2368899999999999999989999999999
Q ss_pred EEECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCce
Q psy4665 193 VVAADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 193 Vvda~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
|+|.++....+.. .++..+.. .+.|+++|+||+|+.+. +.++..+..++.+ ..
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------~~ 154 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG--------AA 154 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------CC
Confidence 9999986555443 33344433 36899999999998531 1222222222221 14
Q ss_pred eEEEeeccCCCC-hhhHHHHHHHH
Q psy4665 254 QAVPISALTGTN-VDNLTEAIERT 276 (673)
Q Consensus 254 ~~v~iSA~~g~g-v~~l~~~i~~~ 276 (673)
+++++||++|.| ++++|+.+.+.
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 799999999998 99999988663
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=4.5e-18 Score=165.92 Aligned_cols=159 Identities=22% Similarity=0.302 Sum_probs=110.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|++|+|||||++++....+... .++++.+.....+... .+..+.+|||||++.|..++...++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 56899999999999999999988776433 3433333333333322 34689999999999999988888899999999
Q ss_pred EEECCCCChHhh-HH----HHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQT-VE----SIRMAREAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~-~~----~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++...... .. ........++|+++++||+|+.+. ..++..+.+...... ....++++++||++|.|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELS---ASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccC---CCCceEEEEeecccCCCH
Confidence 999998533222 11 222223457999999999999643 233332222111100 011357899999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 159 ~~l~~~l~~~l 169 (183)
T cd04152 159 QEGLEKLYEMI 169 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999987655
No 145
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=4.8e-18 Score=161.82 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=106.5
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|++|+|||||++++....+. ...+++..+. ..+.. ....+.+|||||++.|..++...++.+|++++|+|+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 6999999999999999999877664 3344333332 33444 567899999999999999988889999999999999
Q ss_pred CCCCh-HhhHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 197 DDGVM-EQTVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 197 ~~g~~-~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
++... .+..+.+..+.. .+.|+++++||+|+.+.. ..+..+.+ +... .....+.++++||++|.|+++++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL---GLHS-LRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh---Cccc-cCCCCEEEEEeeCCCCCCHHHHH
Confidence 87432 223333433322 358999999999996532 22322222 1110 01123567899999999999999
Q ss_pred HHHHH
Q psy4665 271 EAIER 275 (673)
Q Consensus 271 ~~i~~ 275 (673)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98853
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=2.4e-18 Score=163.42 Aligned_cols=151 Identities=23% Similarity=0.212 Sum_probs=106.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|++|+|||||+++|....+.. ..+++. .....+.. .+..+.+|||||++.|..++..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIG--FNVETVTY-KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccC--cCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 48999999999999999998766542 233322 22233444 567899999999999999988889999999999999
Q ss_pred CCCChHh-hHHHHH-HHH---HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 197 DDGVMEQ-TVESIR-MAR---EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 197 ~~g~~~q-~~~~l~-~~~---~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
++..... ..+.+. .+. ..++|+++++||+|+.+.. ..++...+ +... ......+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL---GLSE-LKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh---Cccc-cCCCcEEEEEeeccCCCCHHHHH
Confidence 8853222 223332 222 2478999999999997543 23322222 1110 01123579999999999999999
Q ss_pred HHHHH
Q psy4665 271 EAIER 275 (673)
Q Consensus 271 ~~i~~ 275 (673)
+++.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99864
No 147
>KOG0092|consensus
Probab=99.78 E-value=3.1e-18 Score=160.28 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=122.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|..++|||||+-|+..+.+.....++|.-.+-...+..++ ..++.+|||+|+++|.++..-+++.|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4567899999999999999999999998887666666555555555532 247789999999999999999999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHHcCCC---EEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMAREAKVP---IIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~~~iP---~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|.++..+.+. ..++..++...-| +.+|+||+|+.+. ..++......+.+ ..++++||++|.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g---------ll~~ETSAKTg~ 153 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG---------LLFFETSAKTGE 153 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC---------CEEEEEeccccc
Confidence 9999999555544 4455666554335 5669999999752 3445555554443 579999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++|..|.+...
T Consensus 154 Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLP 167 (200)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999987643
No 148
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.78 E-value=3.9e-18 Score=164.33 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=113.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|++|+|||||++++.+..+...+.+++..++....+...+ ...+.||||||++.|..++...++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 689999999999999999999988777777766666555555522 3468899999999999999988999999999999
Q ss_pred CCCCChHhhH-HHHHHHHHc----CCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 196 ADDGVMEQTV-ESIRMAREA----KVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 196 a~~g~~~q~~-~~l~~~~~~----~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
+++....... .++..+... ..|+++|+||+|+..... ....+...... ..+ ..+++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~---~~~--~~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA---AEM--QAEYWSVSALSGENVREF 156 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH---HHc--CCeEEEEECCCCCCHHHH
Confidence 9885433333 333333332 356899999999854321 11111111110 011 247899999999999999
Q ss_pred HHHHHHHHHH
Q psy4665 270 TEAIERTKNM 279 (673)
Q Consensus 270 ~~~i~~~~~~ 279 (673)
++.+.+....
T Consensus 157 f~~l~~~~~~ 166 (170)
T cd04108 157 FFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHH
Confidence 9999877643
No 149
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=6.4e-18 Score=162.41 Aligned_cols=154 Identities=22% Similarity=0.216 Sum_probs=113.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|++|+|||||++++.+..+.....+.++.+.....+.+. ....+.||||||++.|..++...++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 34689999999999999999999888776655655555544455552 22367889999999999999989999999999
Q ss_pred EEECCCCChHhhHHHH-HHHH-------HcCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 193 VVAADDGVMEQTVESI-RMAR-------EAKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l-~~~~-------~~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
|+|.++....+....| ..+. ..++|+++++||+|+... ..++..+...+.+ ..+++++||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~ 155 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG--------DYPYFETSAKD 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC--------CCeEEEEECCC
Confidence 9999986544433322 2221 135799999999999632 2333444333322 24789999999
Q ss_pred CCChhhHHHHHHH
Q psy4665 263 GTNVDNLTEAIER 275 (673)
Q Consensus 263 g~gv~~l~~~i~~ 275 (673)
|.|+.++++.+.+
T Consensus 156 ~~~v~~~~~~~~~ 168 (170)
T cd04116 156 ATNVAAAFEEAVR 168 (170)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 150
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=4.1e-18 Score=163.49 Aligned_cols=153 Identities=24% Similarity=0.217 Sum_probs=105.1
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----c---hhhhhhccccCCe
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----F---SNMRSRGAHCTDI 189 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----f---~~~~~~~~~~aD~ 189 (673)
+|+++|++|||||||+++|.+........++.|.+.....+.+.+...++||||||+.+ + .....+.+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 58999999999999999999877655566667776655556653333899999999742 1 1222234567999
Q ss_pred EEEEEECCCC-ChHhhH-HHHHHHHH-----cCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 190 VVLVVAADDG-VMEQTV-ESIRMARE-----AKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g-~~~q~~-~~l~~~~~-----~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++|+|++++ ...+.. .+.+.+.. .++|+++|+||+|+.+... .+......... ...+++++||+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~ 154 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL-------WGKPVFPISAL 154 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC-------CCCCEEEEecC
Confidence 9999999987 333333 23333332 3689999999999965322 11111111110 13578999999
Q ss_pred CCCChhhHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERT 276 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~ 276 (673)
++.|++++++++.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988653
No 151
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=5e-18 Score=163.69 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=107.3
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
|+++|.+|+|||||++++.+..+.....+.+..... ..+.. ++. .+.+|||||++.|..++...+..+|++++|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 579999999999999999998876665555443332 33444 333 58899999999999988888899999999999
Q ss_pred CCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCCcH---------------HHHHHHHHHcCccccccCCceeEE
Q psy4665 196 ADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAADI---------------ERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 196 a~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
.++....+.. .++..+.. .++|+++++||+|+..... ++..+..+. .+..+++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~ 150 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR--------IGAVKYL 150 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH--------cCCcEEE
Confidence 9985444332 23333433 3789999999999964211 111111111 1224799
Q ss_pred EeeccCCCChhhHHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~ 276 (673)
++||++|.|++++++.+.+.
T Consensus 151 e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 151 ECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999999998765
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=4.9e-18 Score=168.12 Aligned_cols=157 Identities=27% Similarity=0.341 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC-----------Ccchhhhhh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-----------AAFSNMRSR 182 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~-----------~~f~~~~~~ 182 (673)
+.++|+++|++|+|||||+++|.+..+.....+++|.+... +.+ . .+++|||||+ +.|...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee-c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 46789999999999999999999988777677788776542 333 2 6899999994 334443322
Q ss_pred ----ccccCCeEEEEEECCCCC-----------hHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcccc
Q psy4665 183 ----GAHCTDIVVLVVAADDGV-----------MEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVE 247 (673)
Q Consensus 183 ----~~~~aD~~vlVvda~~g~-----------~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~ 247 (673)
.+..+|++++|+|+++.. ...+.+.+..+...++|+++++||+|+.+...+...+.....+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~- 161 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP- 161 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc-
Confidence 345678999999997521 2234566777777899999999999997544222222222222210
Q ss_pred ccC-CceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 248 DLG-GDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 248 ~~~-~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
.+. ...+++++||++| |++++++++.+..
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 010 1236899999999 9999999997653
No 153
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=9.1e-18 Score=166.06 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=116.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.++|+++|++|+|||||+++|.+..+...+.++++.++....+.+++ ...+.||||||++.|..++...++.+|++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 57899999999999999999999887666666665555555555532 23688999999999999999899999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH--cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVMEQTV-ESIRMARE--AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~--~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++....+.. .++..+.. ...|+++++||+|+... ...+........ ..+++++||++|.|++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM---------GISLFETSAKENINVE 156 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECCCCcCHH
Confidence 999986544433 33343333 35799999999999653 222222222221 3579999999999999
Q ss_pred hHHHHHHHHHH
Q psy4665 268 NLTEAIERTKN 278 (673)
Q Consensus 268 ~l~~~i~~~~~ 278 (673)
++++++.....
T Consensus 157 ~lf~~l~~~~~ 167 (199)
T cd04110 157 EMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999977653
No 154
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=7.9e-18 Score=161.41 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=113.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..++|+++|++|+|||||+++|....+.....++++.+.....+.+ ++ ..+.+|||||++.|...+...+..+|+++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4589999999999999999999987766555555665665555666 34 35788999999999999888999999999
Q ss_pred EEEECCCCChHhhHHHH----HHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQTVESI----RMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l----~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|++++...+....| +.+...++|+++++||+|+..... ....+.+.+. ...+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~--------~~~~~~~~Sa~~~~g 156 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDA--------QDMYYLETSAKESDN 156 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH--------cCCeEEEeeCCCCCC
Confidence 99999986544332222 333334789999999999864221 1112222211 125789999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 157 v~~l~~~i~~~ 167 (169)
T cd04114 157 VEKLFLDLACR 167 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 155
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=7.1e-18 Score=163.72 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+++|||||++++.+..+...+.+++..... ..+..++ ...+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999998887666666544443 3444422 236789999999999999888899999999999
Q ss_pred ECCCCChHhh-H-HHHHHHHH--cCCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCceeE
Q psy4665 195 AADDGVMEQT-V-ESIRMARE--AKVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 195 da~~g~~~q~-~-~~l~~~~~--~~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|.++....+. . .++..+.. .+.|+++|+||+|+.+. +.++..+...+.+ ..++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------~~~~ 152 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------AEIY 152 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------CCEE
Confidence 9998665544 2 33344433 36899999999998541 1122222222221 2378
Q ss_pred EEeeccCCCC-hhhHHHHHHHH
Q psy4665 256 VPISALTGTN-VDNLTEAIERT 276 (673)
Q Consensus 256 v~iSA~~g~g-v~~l~~~i~~~ 276 (673)
+++||++|++ ++++|..+.+.
T Consensus 153 ~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EECccCcCCcCHHHHHHHHHHH
Confidence 9999999995 99999988763
No 156
>KOG0394|consensus
Probab=99.78 E-value=3.4e-18 Score=158.25 Aligned_cols=156 Identities=23% Similarity=0.271 Sum_probs=125.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+.+|.++|.+|+|||||++++.+.++...+..+|..++....+.. +++ .+++|||+|+++|.++....++.||++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 45679999999999999999999999988887777777777777776 354 466899999999999999999999999
Q ss_pred EEEEECCCCChHhhHHHHHH--HHH------cCCCEEEEEecCCCCCC-----cHHHHHHHHHHcCccccccCCceeEEE
Q psy4665 191 VLVVAADDGVMEQTVESIRM--ARE------AKVPIIVAINKIDKPAA-----DIERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l~~--~~~------~~iP~IvviNK~Dl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
++|+|.++.-....++.|+. +.. ...|+|+++||+|+.+. +..+..++.... +++|+++
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------gnipyfE 157 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------GNIPYFE 157 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc--------CCceeEE
Confidence 99999998776666666642 222 24699999999999652 234445555444 3689999
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||+...|+++.|+.+....
T Consensus 158 tSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999999999999887654
No 157
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.78 E-value=4.6e-18 Score=167.87 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhh--------hhhccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNM--------RSRGAH 185 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~--------~~~~~~ 185 (673)
.+|+++|.+|+|||||++++.+..+...+.++++.+.....+.+ ++ ..+.||||||+..|... ....+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 36999999999999999999998887666666655554444555 45 46789999998765321 234578
Q ss_pred cCCeEEEEEECCCCChHhhHHH-HHHHH------HcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEE
Q psy4665 186 CTDIVVLVVAADDGVMEQTVES-IRMAR------EAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~-l~~~~------~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
.+|++++|+|++++...+.... +..+. ..++|+++|+||+|+..... .+..+.+... ...++++
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~ 152 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK-------SWKCGYL 152 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH-------hcCCcEE
Confidence 8999999999998655443332 23332 24689999999999965321 1111111111 0146899
Q ss_pred EeeccCCCChhhHHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~ 276 (673)
++||++|.|++++|+.+.+.
T Consensus 153 e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 153 ECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999999988764
No 158
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=1e-17 Score=162.23 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
...+|+++|.+|+|||||+++|..+.+. ...+++..++ ..+.. .+..+.+|||||++.|..++...++.+|++++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~--~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNV--ETVTY-KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccce--EEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4588999999999999999999876653 3334444333 33444 567899999999999999998889999999999
Q ss_pred EECCCCC-hHhhHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGV-MEQTVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~-~~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++.. .....+.+..+.. .++|+++++||+|+.+. +.+++.+.+ +... .....+.++++||++|.|++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHS-IRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Cccc-cCCCcEEEEEeeCCCCCCHH
Confidence 9998743 2233444444322 36899999999999754 223322222 2110 01123567899999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
+++++|.+.
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 999998765
No 159
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=5.4e-18 Score=163.94 Aligned_cols=153 Identities=22% Similarity=0.158 Sum_probs=109.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
..+|+++|++|+|||||+++|..+.+.. ..+ |.......+.+ ++.++.+|||||++.|...+...+..+|++++|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSP--TIGSNVEEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCC--ccccceEEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 5789999999999999999998876543 233 33333344555 5678999999999999999888899999999999
Q ss_pred ECCCCChHh-hHHHHHHH-HH---cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 195 AADDGVMEQ-TVESIRMA-RE---AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 195 da~~g~~~q-~~~~l~~~-~~---~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
|+++..... ..+.+..+ .. .++|+++++||+|+.+. +.+++.+.+.... .. ...++++++||++|.|+++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~--~~--~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS--IR--DHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc--cc--CCceEEEecccCCCCCHHH
Confidence 999853322 22223322 22 36899999999999753 3333333321110 01 1135799999999999999
Q ss_pred HHHHHHH
Q psy4665 269 LTEAIER 275 (673)
Q Consensus 269 l~~~i~~ 275 (673)
++++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999853
No 160
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=8.9e-18 Score=168.57 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|.+|+|||||+++++.+.+.....+++..++....+... ....+.+|||||++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 456899999999999999999999888766665655555544444442 2357899999999999999988899999999
Q ss_pred EEEECCCCChHhhHHHH-HHHH--HcCCCEEEEEecCCCCCCcHH-HHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 192 LVVAADDGVMEQTVESI-RMAR--EAKVPIIVAINKIDKPAADIE-RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l-~~~~--~~~iP~IvviNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+|.++....+....| ..+. ..++|+++|+||+|+...... ...+.... ..++++++||++|.|++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~---------~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---------KNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHh---------cCCEEEEcCCCCCCCHH
Confidence 99999986655444333 3333 246899999999999643211 11111111 13678999999999999
Q ss_pred hHHHHHHHHHH
Q psy4665 268 NLTEAIERTKN 278 (673)
Q Consensus 268 ~l~~~i~~~~~ 278 (673)
++|+++.+...
T Consensus 162 ~~f~~l~~~~~ 172 (219)
T PLN03071 162 KPFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=5.4e-18 Score=162.83 Aligned_cols=154 Identities=23% Similarity=0.199 Sum_probs=109.6
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|.+|+|||||+++|.+. +.....+ |.......+.. ++..+++|||||++.|..++..+++.+|++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~--t~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAP--TVGFTPTKLRL-DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccC--cccceEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 3333333 22233344555 578899999999999999999899999999999999
Q ss_pred CCCChH-hhHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCC------C
Q psy4665 197 DDGVME-QTVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTG------T 264 (673)
Q Consensus 197 ~~g~~~-q~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g------~ 264 (673)
++.... .....+..+.. .++|+++++||+|+++.. ..++.+.+.-..+ .++....++++++||++| .
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~-~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL-VNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc-cCCCCceEEEEEeEceeCCCCcccc
Confidence 985432 23334444432 478999999999997654 3333333211111 111233468899999998 8
Q ss_pred ChhhHHHHHHH
Q psy4665 265 NVDNLTEAIER 275 (673)
Q Consensus 265 gv~~l~~~i~~ 275 (673)
|+++.++||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999854
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=4.5e-18 Score=168.85 Aligned_cols=152 Identities=30% Similarity=0.373 Sum_probs=108.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc---------chhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA---------FSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~---------f~~~~~~~ 183 (673)
+..++|+++|++|||||||+++|++..+.....++.|.+.....+.++++..+.||||||+.+ |.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 345899999999999999999999987655555666776666666664445899999999833 22221 23
Q ss_pred cccCCeEEEEEECCCCChHhhHH-HHHHHH---HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVE-SIRMAR---EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~-~l~~~~---~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
+..+|++++|+|++++....... +...+. ..++|+++|+||+|+....... ... .....+++++|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~~---------~~~~~~~~~~S 186 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ERL---------EAGRPDAVFIS 186 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HHh---------hcCCCceEEEE
Confidence 56799999999999876544332 223333 3468999999999997543221 111 11245799999
Q ss_pred ccCCCChhhHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERT 276 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~ 276 (673)
|+++.|++++++++...
T Consensus 187 a~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 187 AKTGEGLDELLEAIEEL 203 (204)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999988653
No 163
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.77 E-value=8.9e-18 Score=162.45 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=108.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||+.++..+.+...+.+++.. .....+.. ++ ..+.+|||||++.|..++..+++.+|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 47999999999999999999998876665554432 22223344 33 4678999999999999988889999999999
Q ss_pred EECCCCChHhhH-H-HHHHHHH--cCCCEEEEEecCCCCCCc--HHHHHHHH-----HHcCccccccCCceeEEEeeccC
Q psy4665 194 VAADDGVMEQTV-E-SIRMARE--AKVPIIVAINKIDKPAAD--IERTKNML-----LAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 194 vda~~g~~~q~~-~-~l~~~~~--~~iP~IvviNK~Dl~~~~--~~~~~~~l-----~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+|.++....+.. . ++..+.. .++|+++|+||+|+.+.. .+...+.. .+.+..+....+..+++++||++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999986555443 2 3333332 368999999999996421 11110000 00000001111235899999999
Q ss_pred CCChhhHHHHHHH
Q psy4665 263 GTNVDNLTEAIER 275 (673)
Q Consensus 263 g~gv~~l~~~i~~ 275 (673)
|.|++++++.+.+
T Consensus 160 ~~~i~~~f~~l~~ 172 (174)
T cd01871 160 QKGLKTVFDEAIR 172 (174)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999998864
No 164
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.77 E-value=1e-17 Score=159.37 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=111.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....+.++.+.....+.+.. ...+.+|||||++.|..+....++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 3799999999999999999998877655555555554444444422 247889999999999988888889999999999
Q ss_pred ECCCCChHhhHHHH-HHHH----HcCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMAR----EAKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~----~~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++....+....| ..+. ..+.|+++++||+|+... +.++..+..... .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH---------NMLFIETSAKTRDGVQ 151 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc---------CCEEEEEecCCCCCHH
Confidence 99986554443332 2232 347899999999999633 233333332222 3679999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++.+.+
T Consensus 152 ~~~~~~~~ 159 (161)
T cd01863 152 QAFEELVE 159 (161)
T ss_pred HHHHHHHH
Confidence 99988765
No 165
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.77 E-value=7.7e-18 Score=160.23 Aligned_cols=152 Identities=22% Similarity=0.173 Sum_probs=107.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||+++|+...+.....+.+. +........+ ....+.+|||||+++|..++...++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 3799999999999999999998876554443332 2222333332 2346889999999999999999999999999999
Q ss_pred ECCCCChHh-hHHHHHHHH----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQ-TVESIRMAR----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q-~~~~l~~~~----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|.++..... ....+..+. ..++|+++|+||+|+... ............ ..+++++||++|.|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gi 150 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW---------GVPYVETSAKTRQNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEeeCCCCCCH
Confidence 998744221 122222222 257999999999999652 122222222221 257999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 151 ~~l~~~l~~~~ 161 (164)
T cd04139 151 EKAFYDLVREI 161 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 166
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=1.4e-17 Score=160.26 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=112.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcch-hhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFS-NMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~-~~~~~~~~~aD~~vl 192 (673)
..+|+++|++|+|||||+++++...+.....++++.+.....+.+.. ...+.+|||||+++|. .++...++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 57899999999999999999998887666666666555555565532 2478899999999987 467778899999999
Q ss_pred EEECCCCChHhhHHHHH-HHHH----cCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEEeeccC---
Q psy4665 193 VVAADDGVMEQTVESIR-MARE----AKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVPISALT--- 262 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~-~~~~----~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~--- 262 (673)
|+|++++...+....|. .+.. .++|+++++||+|+.+... ....+.+... ..++++++||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~~~~ 153 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA--------HSMPLFETSAKDPSE 153 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH--------cCCcEEEEeccCCcC
Confidence 99999876665554443 3333 3589999999999864321 1112222211 136799999999
Q ss_pred CCChhhHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERT 276 (673)
Q Consensus 263 g~gv~~l~~~i~~~ 276 (673)
+.++++++..+.+.
T Consensus 154 ~~~i~~~f~~l~~~ 167 (170)
T cd04115 154 NDHVEAIFMTLAHK 167 (170)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888877653
No 167
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=1.4e-17 Score=158.62 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=110.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....+.....+....+.+. .+..+.+|||||++.|...+...++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 579999999999999999999988766444444433434445553 2346889999999999988888889999999999
Q ss_pred ECCCCChH-hhHHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVME-QTVESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~-q~~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++.... +...++..+.. .++|+++++||+|+... +........... ..+++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN---------GLLFFETSAKTGENVN 152 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc---------CCEEEEEECCCCCCHH
Confidence 99975433 22333344433 35789999999998632 233333333222 2579999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++++.+.
T Consensus 153 ~l~~~l~~~ 161 (163)
T cd01860 153 ELFTEIAKK 161 (163)
T ss_pred HHHHHHHHH
Confidence 999998764
No 168
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=1.2e-17 Score=164.04 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccc-cccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~-~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||++++....+... ..++++.+.....+...+ ...+.||||||++.|...+...++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 3699999999999999999998887543 344444444433444421 24688999999999998888888999999999
Q ss_pred EECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|+++....+. ..++..+.. .++|+++++||+|+... ...+........ ..+++++||++|.|+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~---------~~~~~e~Sa~~~~~v 151 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY---------GVPFMETSAKTGLNV 151 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc---------CCeEEEEeCCCCCCH
Confidence 99998544332 223333333 36899999999999532 122222222221 257999999999999
Q ss_pred hhHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKN 278 (673)
Q Consensus 267 ~~l~~~i~~~~~ 278 (673)
+++++++.+...
T Consensus 152 ~~l~~~l~~~~~ 163 (191)
T cd04112 152 ELAFTAVAKELK 163 (191)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 169
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.77 E-value=9.4e-18 Score=161.80 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=107.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||++++.++.+...+.+.+.. .....+..++ ...+.+|||||++.|...+...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 37999999999999999999998876555444332 2223344422 235779999999999998888889999999999
Q ss_pred ECCCCChHhhHH--HHHHHH--HcCCCEEEEEecCCCCCCcHHHH-HHHHHHcC------ccccccCCceeEEEeeccCC
Q psy4665 195 AADDGVMEQTVE--SIRMAR--EAKVPIIVAINKIDKPAADIERT-KNMLLAQG------ITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 195 da~~g~~~q~~~--~l~~~~--~~~iP~IvviNK~Dl~~~~~~~~-~~~l~~~~------~~~~~~~~~~~~v~iSA~~g 263 (673)
|.++....+... ++..+. ..++|+++++||+|+.+...... ........ ..+....+..+++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999865443331 223332 35789999999999864321110 00000000 00000112347999999999
Q ss_pred CChhhHHHHHHHH
Q psy4665 264 TNVDNLTEAIERT 276 (673)
Q Consensus 264 ~gv~~l~~~i~~~ 276 (673)
.|++++++.+.+.
T Consensus 160 ~gi~~~f~~~~~~ 172 (174)
T cd04135 160 KGLKTVFDEAILA 172 (174)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988764
No 170
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=7.6e-18 Score=160.02 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=106.4
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|.+|+|||||+++|.+..+... .+++ ......+.......+.+|||||++.|..++...+..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~--~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTV--GFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCcc--CcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 489999999999999999998876432 2322 2333344444557899999999999998888888999999999999
Q ss_pred CCCChH-hhHHHHHHHH----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 197 DDGVME-QTVESIRMAR----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 197 ~~g~~~-q~~~~l~~~~----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+++... .....+..+. ..+.|+++++||+|++.. ...++...+.... .. .....+++++||++|+|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKK--YC-SDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcc--cC-CCCcEEEEecccccCCChHHHH
Confidence 985422 2222232221 257899999999999653 2233222221111 10 1124579999999999999999
Q ss_pred HHHHH
Q psy4665 271 EAIER 275 (673)
Q Consensus 271 ~~i~~ 275 (673)
+++.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98853
No 171
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=1.4e-17 Score=162.24 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=110.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|.+|+|||||+++|..+.+. ...+++..+. ..+.. .+..+.+|||||++.|..++...++.+|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34578999999999999999999876654 2334443333 34454 57789999999999999999989999999999
Q ss_pred EEECCCCChH-hhHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCcccccc-CCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVME-QTVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDL-GGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~-q~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~v~iSA~~g~g 265 (673)
|+|+++.... .....+..+.. .++|+++++||+|+++.. .+++.+.+ ++. .. ...+.++++||++|+|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~--~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLH--SLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---Ccc--ccCCCceEEEeccCCCCCC
Confidence 9999984332 22233333221 368999999999997643 22222222 221 11 1123567899999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 166 v~e~~~~l~~~~ 177 (181)
T PLN00223 166 LYEGLDWLSNNI 177 (181)
T ss_pred HHHHHHHHHHHH
Confidence 999999997653
No 172
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=1.6e-17 Score=167.23 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=114.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|.+++|||||+.++....+...+.+++..++.. .+... ....+.||||||++.|..++..+++.||++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 34689999999999999999999998877766666544432 34442 22468899999999999999889999999999
Q ss_pred EEECCCCChHhh--HHHHHHHHH--cCCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCce
Q psy4665 193 VVAADDGVMEQT--VESIRMARE--AKVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 193 Vvda~~g~~~q~--~~~l~~~~~--~~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
|+|.++....+. ..++..+.. .+.|+|+|+||+|+... ..++..+...+.+ ..
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------~~ 162 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG--------AE 162 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC--------CC
Confidence 999998665543 233344443 36899999999998531 1222333332222 12
Q ss_pred eEEEeeccCCC-ChhhHHHHHHHHHH
Q psy4665 254 QAVPISALTGT-NVDNLTEAIERTKN 278 (673)
Q Consensus 254 ~~v~iSA~~g~-gv~~l~~~i~~~~~ 278 (673)
.++++||++|+ |++++|+.+.....
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 68999999998 89999999877543
No 173
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.77 E-value=8.7e-18 Score=163.73 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|..++|||||+.++....+...+.+++..++....+.. ++ ..+.+|||+|++.|..++..+++.+|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 36999999999999999999999887766666666665555665 34 4678999999999999998889999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC----cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA----DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~----~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+++....+.. +++..+.. ...| |+|+||+|+... ......+...+.. ..+ ..+++++||++|.|
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a---~~~--~~~~~e~SAk~g~~ 153 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA---KAM--KAPLIFCSTSHSIN 153 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH---HHc--CCEEEEEeCCCCCC
Confidence 999986544433 33333433 2456 678999999531 1111111111111 111 25799999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 154 v~~lf~~l~~~l 165 (182)
T cd04128 154 VQKIFKIVLAKA 165 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 174
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=6.6e-18 Score=160.16 Aligned_cols=151 Identities=25% Similarity=0.272 Sum_probs=108.1
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|++|+|||||++++.+.... ...+ |.......+.+ ++..+.+|||||++.|...+...+..+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCC--CcCcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 4899999999999999999988732 2222 33333344555 567899999999999998888888999999999999
Q ss_pred CCCC-hHhhHHHHHHHH----HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 197 DDGV-MEQTVESIRMAR----EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 197 ~~g~-~~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+++. .......+..+. ..+.|+++++||+|+.... .+++.+.+.... ......+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK----ILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh----ccCCcEEEEEeeCCCCCCHHHHH
Confidence 9863 222333333322 3578999999999997543 333333322110 01124689999999999999999
Q ss_pred HHHHH
Q psy4665 271 EAIER 275 (673)
Q Consensus 271 ~~i~~ 275 (673)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 98753
No 175
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=1.4e-17 Score=158.92 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=112.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|++|+|||||++++....+.....++++.+.....+...+ ...+.+|||||++.|..++...++.+|++++|+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 699999999999999999999888766666666666555566532 2467899999999999998888999999999999
Q ss_pred CCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 196 ADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 196 a~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
.++....+.. .++..+.. .++|+++++||+|+.+.. .++.....+.. .++++++||++|.|+++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY---------GMDFFETSACTNSNIKE 152 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCCHHH
Confidence 9985443333 22333322 368999999999996432 22222222211 25789999999999999
Q ss_pred HHHHHHHH
Q psy4665 269 LTEAIERT 276 (673)
Q Consensus 269 l~~~i~~~ 276 (673)
+|+++.+.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99998653
No 176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=1e-17 Score=159.69 Aligned_cols=150 Identities=20% Similarity=0.178 Sum_probs=107.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||++++..+.+.....+++ .+.....+.. ++. .+.||||||++.|..++..+++.+|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 479999999999999999999887765544433 2333334444 333 577899999999999999889999999999
Q ss_pred EECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|.++....+. .+++..+.. .++|+++++||+|+.... .......... + ..+++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~~ 150 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-------W--GCPFMETSAKSKTM 150 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-------h--CCEEEEecCCCCCC
Confidence 99998554333 233333332 478999999999985421 1111111111 1 25789999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd04176 151 VNELFAEIVRQ 161 (163)
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 177
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=1.1e-17 Score=160.84 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=107.5
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++|.+|+|||||+++|.+..+.. +.+ |.......+.. ++..+.+|||||+..|...+...++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~--T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIP--TIGFNVETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCC--cCceeEEEEEE-CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 48899999999999999999876532 333 33333334444 577899999999999998888888999999999999
Q ss_pred CCCCh-HhhHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 197 DDGVM-EQTVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 197 ~~g~~-~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
++... ......+..+.. .+.|+++++||+|+.+. +.++..+.+...... ......++++||++|.|+++++
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC---CGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc---CCCcEEEEeCcCCCCCCHHHHH
Confidence 88432 222333333322 34799999999999753 333333333111110 0113468899999999999999
Q ss_pred HHHHHH
Q psy4665 271 EAIERT 276 (673)
Q Consensus 271 ~~i~~~ 276 (673)
+++.+.
T Consensus 154 ~~l~~~ 159 (169)
T cd04158 154 DWLSRQ 159 (169)
T ss_pred HHHHHH
Confidence 998653
No 178
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=2e-17 Score=165.12 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=117.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|.+|+|||||+++|.+..+.....++++.++....+.+.++ ..+.+|||||++.|..++...++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 368999999999999999999998876666666666665555655333 468899999999999988888999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|.++....... +++..+.. ...|+++++||+|+... ..+...+..+.. ..+++++||++|.
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sak~g~ 152 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDL---------GMKYIETSARTGD 152 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHh---------CCEEEEEeCCCCC
Confidence 9999985443332 23333322 24678999999999642 222222222221 2679999999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy4665 265 NVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~ 282 (673)
|++++++++.+.....+.
T Consensus 153 ~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 153 NVEEAFELLTQEIYERIK 170 (211)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999887655544
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.7e-17 Score=183.91 Aligned_cols=185 Identities=22% Similarity=0.340 Sum_probs=135.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----c----hhhhhhcccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----F----SNMRSRGAHC 186 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----f----~~~~~~~~~~ 186 (673)
++|+++|++|+|||||+|+|.+... .....+++|.+.....+.+ ++..+.+|||||++. + ......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998774 3556788898888777777 678999999999987 2 2223456789
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|++++|+|++++......+....++..++|+++|+||+|+.+.. .........+ ..+++++||++|.|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~~lg--------~~~~~~iSa~~g~gv 150 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFYSLG--------LGEPYPISAEHGRGI 150 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHHhcC--------CCCCEEEEeeCCCCH
Confidence 999999999999888888888888888899999999999975421 1112222211 124789999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 267 DNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 267 ~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
+++++++....... .. .++ .....-+.+-...|.|-..|++.+..
T Consensus 151 ~~l~~~I~~~~~~~---~~-~~~-~~~~~~v~ivG~~n~GKStlin~ll~ 195 (435)
T PRK00093 151 GDLLDAILEELPEE---EE-EDE-EDEPIKIAIIGRPNVGKSSLINALLG 195 (435)
T ss_pred HHHHHHHHhhCCcc---cc-ccc-cccceEEEEECCCCCCHHHHHHHHhC
Confidence 99999987632110 00 000 11122234556788899999988763
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=1.3e-17 Score=184.60 Aligned_cols=185 Identities=24% Similarity=0.334 Sum_probs=137.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc--------chhhhhhccccC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA--------FSNMRSRGAHCT 187 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~--------f~~~~~~~~~~a 187 (673)
+|+++|++|+|||||+|+|++... .....+|+|.+.....+.+ ++..+.+|||||+.. +......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 489999999999999999998764 3556789999888788877 678999999999743 334445677899
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|++++|+|+.++....+.+.++.++..++|+++|+||+|+.+.... ...+...+ ..+++++||.+|.|++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~~lg--------~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFYSLG--------FGEPIPISAEHGRGIG 149 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHHhcC--------CCCeEEEeCCcCCChH
Confidence 9999999999999999988999999899999999999998653321 11222222 2368999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 268 NLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 268 ~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
++++++.+....... ..+.....+. +.+-...+.|-..|++.+..
T Consensus 150 ~ll~~i~~~l~~~~~---~~~~~~~~~~-v~ivG~~~~GKSsLin~l~~ 194 (429)
T TIGR03594 150 DLLDAILELLPEEEE---EEEEEDGPIK-IAIIGRPNVGKSTLVNALLG 194 (429)
T ss_pred HHHHHHHHhcCcccc---cccccCCceE-EEEECCCCCCHHHHHHHHHC
Confidence 999988765422110 0000111122 33445678888899888753
No 181
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.76 E-value=2.3e-17 Score=157.33 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=109.2
Q ss_pred EEEEEeCCCCChhHHHHHHhcC--ccccccccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT--SVVKSEFGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~--~~~~~~~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+|+++|.+++|||||+++|... .+...+.+++..++....+... ....+.+|||||++.|..++...+..+|++++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 6999999999999999999865 4555555555555544445443 23578899999999999998889999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH--cCCCEEEEEecCCCCCCc-HHHHH-HHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE--AKVPIIVAINKIDKPAAD-IERTK-NMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~--~~iP~IvviNK~Dl~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+|.++....... .++..+.. .++|+++|+||+|+.+.. ..... +.+... ...+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 82 VYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA--------NQLKFFKTSALRGVGYE 153 (164)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH--------cCCeEEEEeCCCCCChH
Confidence 9999985443322 23333333 368999999999996432 11111 111111 13578999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++.+.+.
T Consensus 154 ~l~~~l~~~ 162 (164)
T cd04101 154 EPFESLARA 162 (164)
T ss_pred HHHHHHHHH
Confidence 999988764
No 182
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.3e-17 Score=176.50 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc-------chhhhhhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-------FSNMRSRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-------f~~~~~~~~~~a 187 (673)
...|+|+|.||||||||+++|+..+.....++++|..+....+.+.++.+++++||||... +.....+.+..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4679999999999999999999988878888999999988888876677899999999632 222334566789
Q ss_pred CeEEEEEECCCCChHhhH-HHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 188 DIVVLVVAADDGVMEQTV-ESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~-~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
|++++|+|+++....+.. .+...+.. .++|+++|+||+|+.+..... ...+... .... ..+++++||+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-~~~~~~~---~~~~--~~~i~~iSAk 311 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-EKRAALE---LAAL--GGPVFLISAV 311 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-HHHHHHH---HHhc--CCCEEEEEcC
Confidence 999999999975433333 33333433 368999999999997543211 1111111 0111 2578999999
Q ss_pred CCCChhhHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKN 278 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~ 278 (673)
+++|++++++++.+...
T Consensus 312 tg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 312 TGEGLDELLRALWELLE 328 (335)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
No 183
>KOG0078|consensus
Probab=99.76 E-value=1.3e-17 Score=159.27 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=127.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
....+|+++|.+++|||+|+.++....+......++.+++....+.++ +. .+++|||+|+++|..+...+++.|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-CeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 356789999999999999999999999999988889999998888884 44 678999999999999999999999999
Q ss_pred EEEEECCCCChHhh----HHHHHHHHHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 191 VLVVAADDGVMEQT----VESIRMAREAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 191 vlVvda~~g~~~q~----~~~l~~~~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+||+|.++...... ++.++.....++|.++|+||+|+... ..++-++...+++ ..++++||++|
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G---------~~F~EtSAk~~ 159 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG---------IKFFETSAKTN 159 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC---------CeEEEccccCC
Confidence 99999998544433 33333333357899999999999652 3444555555553 57999999999
Q ss_pred CChhhHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNM 279 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~ 279 (673)
.|+++.|-.+.+....
T Consensus 160 ~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 160 FNIEEAFLSLARDILQ 175 (207)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988876654
No 184
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=1.2e-17 Score=163.05 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+.++|+++|.+|||||||+++|.+..+... .+ |.......+.. ++.++.+|||||+..+..++..++..+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELAI-GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3558899999999999999999998765321 22 33333344555 57889999999999999888889999999999
Q ss_pred EEECCCCChH-hhHHHHHHHH----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccc---cccCCceeEEEeeccCC
Q psy4665 193 VVAADDGVME-QTVESIRMAR----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITV---EDLGGDIQAVPISALTG 263 (673)
Q Consensus 193 Vvda~~g~~~-q~~~~l~~~~----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~---~~~~~~~~~v~iSA~~g 263 (673)
|+|+++.... .....+..+. ..++|+++++||+|++.. +.+++.+.+.-..... ........++++||++|
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 9999875322 2223333322 257899999999999753 4444444332111000 00113467999999999
Q ss_pred CChhhHHHHHHH
Q psy4665 264 TNVDNLTEAIER 275 (673)
Q Consensus 264 ~gv~~l~~~i~~ 275 (673)
.|++++++|+.+
T Consensus 171 ~g~~~~~~wl~~ 182 (184)
T smart00178 171 MGYGEGFKWLSQ 182 (184)
T ss_pred CChHHHHHHHHh
Confidence 999999999864
No 185
>KOG0098|consensus
Probab=99.76 E-value=9.9e-18 Score=155.39 Aligned_cols=160 Identities=21% Similarity=0.199 Sum_probs=129.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..++.++|..++|||+|+.+++...+......++.++++...+.. +++ ++++|||+||+.|...+..+++.|-+++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 467999999999999999999999999888888889999998888 444 78899999999999999999999999999
Q ss_pred EEECCCCChHhh----HHHHHHHHHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQT----VESIRMAREAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~----~~~l~~~~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|.+...+... ++-+++....+.-+++++||+|+... +.++-.+..+++++ .+.++||++++|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL---------ifmETSakt~~~ 155 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL---------IFMETSAKTAEN 155 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc---------eeehhhhhhhhh
Confidence 999998554433 33333333456779999999999642 45556666666654 577999999999
Q ss_pred hhhHHHHHHHHHHHHHhCC
Q psy4665 266 VDNLTEAIERTKNMLLAQG 284 (673)
Q Consensus 266 v~~l~~~i~~~~~~~~~~~ 284 (673)
+++.|......+-.....|
T Consensus 156 VEEaF~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999998877776666544
No 186
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1e-17 Score=160.57 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=106.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEe-cCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTL-KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~-~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|++|+|||||+++|.++.+... .+.+..... ..... ..+.++.+|||||++.+...+...+..+|++++|+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceE-eeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 699999999999999999999877543 232222221 11122 234578999999999888777777899999999999
Q ss_pred CCCCChHhhH-H-HHHHHHH--cCCCEEEEEecCCCCCCcHH-HHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 196 ADDGVMEQTV-E-SIRMARE--AKVPIIVAINKIDKPAADIE-RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 196 a~~g~~~q~~-~-~l~~~~~--~~iP~IvviNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
++++...+.. . ++..++. .+.|+++|+||+|+.+.... ...+.+... ...+....+++++||++|.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI---MNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH---HHHHhcccEEEEeccccccCHHHHH
Confidence 9986665543 2 2333432 37899999999999654321 111111110 0111111378999999999999999
Q ss_pred HHHHHH
Q psy4665 271 EAIERT 276 (673)
Q Consensus 271 ~~i~~~ 276 (673)
+.+.+.
T Consensus 157 ~~~~~~ 162 (166)
T cd01893 157 YYAQKA 162 (166)
T ss_pred HHHHHH
Confidence 988765
No 187
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.76 E-value=2.7e-17 Score=156.05 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=111.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+.....+.++.......+.... ...+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 3799999999999999999998887655555555555445555422 236889999999999988888889999999999
Q ss_pred ECCCCChHhhHHHH-HHHH---HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMAR---EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~---~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|++++...+....| ..+. ..++|+++++||+|+.... .....+..... ..+++++||+++.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~gi~ 151 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---------GAKHFETSAKTGKGIE 151 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCCHH
Confidence 99986554333222 2222 2368999999999997432 22223322222 3568999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++++.+.
T Consensus 152 ~~~~~l~~~ 160 (162)
T cd04123 152 ELFLSLAKR 160 (162)
T ss_pred HHHHHHHHH
Confidence 999998654
No 188
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=3e-17 Score=159.99 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+..+|+++|++|+|||||++++..+.+.. ..+++..+. ..+.. .+..+.+|||||++.|..++...++.+|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEY-KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45789999999999999999998766543 334333332 34444 568899999999999999988889999999999
Q ss_pred EECCCCCh-HhhHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVM-EQTVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~-~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++... ....+.+..+.. .+.|+++++||.|+++.. ..++... .+.... ....+.++++||++|.|++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~---l~~~~~-~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEK---LGLHSV-RQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHH---hCCCcc-cCCcEEEEeeeCCCCCCHH
Confidence 99987332 222333333321 368999999999997542 2222222 222100 0113467799999999999
Q ss_pred hHHHHHHHHHH
Q psy4665 268 NLTEAIERTKN 278 (673)
Q Consensus 268 ~l~~~i~~~~~ 278 (673)
++++++.+...
T Consensus 168 e~~~~l~~~i~ 178 (182)
T PTZ00133 168 EGLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999976543
No 189
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=1.8e-17 Score=163.60 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=110.4
Q ss_pred EeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC
Q psy4665 121 MGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG 199 (673)
Q Consensus 121 vG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g 199 (673)
+|.+++|||||+++++...+...+.+++..+.....+.++ ...++.||||||++.|..++..+++.+|++++|+|+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999887766555555555544445442 234788999999999999999999999999999999997
Q ss_pred ChHhhHHHH-HHHHH--cCCCEEEEEecCCCCCCcHH-HHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 200 VMEQTVESI-RMARE--AKVPIIVAINKIDKPAADIE-RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 200 ~~~q~~~~l-~~~~~--~~iP~IvviNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
...+....| ..+.. .++|+++|+||+|+...... +....... ..++++++||++|.|++++|+++..
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~---------~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK---------KNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH---------cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 665544333 33443 47899999999998542211 11111111 1467999999999999999999987
Q ss_pred HHH
Q psy4665 276 TKN 278 (673)
Q Consensus 276 ~~~ 278 (673)
...
T Consensus 152 ~i~ 154 (200)
T smart00176 152 KLI 154 (200)
T ss_pred HHH
Confidence 653
No 190
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.76 E-value=1.8e-17 Score=159.03 Aligned_cols=151 Identities=22% Similarity=0.255 Sum_probs=106.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|++..+.....+...... ...+..+ ....+.+|||||++.|...+...++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 3799999999999999999999887544444433222 2223332 2346889999999998887777788999999999
Q ss_pred ECCCCChHhh--HHHHHHHHH--cCCCEEEEEecCCCCCCcHH--------------HHHHHHHHcCccccccCCceeEE
Q psy4665 195 AADDGVMEQT--VESIRMARE--AKVPIIVAINKIDKPAADIE--------------RTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 195 da~~g~~~q~--~~~l~~~~~--~~iP~IvviNK~Dl~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
|+++....+. ..++..+.. .++|+++++||+|+...... ...+.... .+..+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~ 151 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE--------IGAIGYM 151 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH--------hCCeEEE
Confidence 9998443332 223333333 35999999999999654322 11111111 1224899
Q ss_pred EeeccCCCChhhHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIER 275 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~ 275 (673)
++||++|.|++++++++.+
T Consensus 152 ~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EeecCCCCCHHHHHHHHhh
Confidence 9999999999999998754
No 191
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=5.3e-17 Score=159.55 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=110.8
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcccc-ccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~-~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+|+++|++|+|||||+++|.+..+.. .+.+++...+....+.. ++. .+.+|||||++.|..++...++.+|++++|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 69999999999999999999988764 33344444444444555 343 566999999999998888788899999999
Q ss_pred EECCCCChHhh-HHHHHHHHHc--CCCEEEEEecCCCCCCcH-------HHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 194 VAADDGVMEQT-VESIRMAREA--KVPIIVAINKIDKPAADI-------ERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~~--~iP~IvviNK~Dl~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+++....+. ..++..+... +.|+++|+||+|+..... .+..+.... + ..+++++||++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-------~--~~~~~~~Sa~~~ 151 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-------I--KAQHFETSSKTG 151 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH-------c--CCeEEEEeCCCC
Confidence 99988544333 2334444433 689999999999854321 111111111 1 357899999999
Q ss_pred CChhhHHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNML 280 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~ 280 (673)
.|++++++++.+.....
T Consensus 152 ~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999998766443
No 192
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=3.2e-17 Score=160.49 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=114.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+...+ ...+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 4799999999999999999999888665556666555555555522 236789999999999999998999999999999
Q ss_pred ECCCCChHhhHH-HHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVE-SIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~-~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++........ ++..+.. .+.|+++++||+|+.+. +........... ..+++++||++|.|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~evSa~~~~~i~ 151 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL---------NIPFFETSAKQSINVE 151 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHc---------CCeEEEEeCCCCCCHH
Confidence 999855443332 2233332 35799999999998642 222222222221 2479999999999999
Q ss_pred hHHHHHHHHHHH
Q psy4665 268 NLTEAIERTKNM 279 (673)
Q Consensus 268 ~l~~~i~~~~~~ 279 (673)
++++++.+....
T Consensus 152 ~~f~~l~~~~~~ 163 (188)
T cd04125 152 EAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999998776543
No 193
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.75 E-value=4.1e-17 Score=163.19 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=112.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
.+|+++|.+|+|||||+++|....+.. ..+.+..++ ....+ ....+.||||||++.|..++..+++.+|++|+|+|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~--~~~~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF--YLKQW-GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE--EEEEe-eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 368999999999999999999988753 333333332 22233 35678999999999999999989999999999999
Q ss_pred CCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC----------------------cHHHHHHHHHHcCc-----
Q psy4665 196 ADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA----------------------DIERTKNMLLAQGI----- 244 (673)
Q Consensus 196 a~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~----------------------~~~~~~~~l~~~~~----- 244 (673)
+++....... ..|..+.. .++|+|+|+||+|+.+. ..++..+..++.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 9986544443 23333332 36899999999999641 12233333333220
Q ss_pred -cccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 245 -TVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 245 -~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.+..+ ..++++++||++|.|++++|+.+.+.....
T Consensus 157 ~~~~~~-~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 157 EDLSPA-AEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred cccccc-ccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 00011 136899999999999999999998765433
No 194
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.4e-17 Score=161.80 Aligned_cols=148 Identities=22% Similarity=0.338 Sum_probs=105.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc--ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC----------cchhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA----------AFSNMR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~--~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~----------~f~~~~ 180 (673)
.+.++|+++|++|+|||||+++|++..+ .....++.|.++..+. . + ..+.+|||||+. .|..+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V-N-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e-C-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 5678999999999999999999998752 2344566776654433 2 2 369999999963 233333
Q ss_pred hhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEE
Q psy4665 181 SRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 181 ~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
..++ ..+|++++|+|++++...++...++.+...++|+++++||+|+...+ .+...+.+++. +...+...+++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~---l~~~~~~~~v~ 168 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKA---LKKDADDPSVQ 168 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHH---HhhccCCCceE
Confidence 3333 34689999999999988888888888888899999999999997432 22222333222 11123345899
Q ss_pred EeeccCCCChh
Q psy4665 257 PISALTGTNVD 267 (673)
Q Consensus 257 ~iSA~~g~gv~ 267 (673)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 195
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=2.5e-17 Score=155.24 Aligned_cols=145 Identities=29% Similarity=0.401 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh--------hhhcccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM--------RSRGAHC 186 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~--------~~~~~~~ 186 (673)
.+|+++|++|+|||||+++|.+.... ....+++|.+.....+.+ .+.++++|||||+.++... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 47999999999999999999987643 455678888777666766 5779999999998776432 2245678
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|++++|+|+++.........+.. ..+.|+++++||+|+.+.... . ......+++++||+++.|+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~--------~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----L--------SLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----c--------cccCCCceEEEECCCCCCH
Confidence 999999999998666555554443 568999999999999754322 0 1112468999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++.+.
T Consensus 146 ~~l~~~l~~~ 155 (157)
T cd04164 146 DELKEALLEL 155 (157)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 196
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=3.2e-17 Score=154.31 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=112.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+...+.++.+.+.....+.... ...+.+|||||+..|.......++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 3699999999999999999999887776666666666555555432 357889999999999998888899999999999
Q ss_pred ECCCCChHhh-HHHHHHHHHc---CCCEEEEEecCCCCC--C-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQT-VESIRMAREA---KVPIIVAINKIDKPA--A-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~-~~~l~~~~~~---~iP~IvviNK~Dl~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|+++...... ..++..+... +.|+++++||+|+.. . ..+...+.... ...+++++||+++.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE---------NGLLFFETSAKTGENVE 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH---------cCCeEEEEecCCCCCHH
Confidence 9998443333 3333444443 489999999999952 2 23333333222 14689999999999999
Q ss_pred hHHHHHH
Q psy4665 268 NLTEAIE 274 (673)
Q Consensus 268 ~l~~~i~ 274 (673)
++++++.
T Consensus 152 ~~~~~i~ 158 (159)
T cd00154 152 ELFQSLA 158 (159)
T ss_pred HHHHHHh
Confidence 9999874
No 197
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.75 E-value=1.8e-17 Score=158.79 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=96.2
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~ 197 (673)
|+++|++|+|||||+++|.+..+.....+++... ...+.. .+.++.+|||||++.|..++..+++.+|++++|+|++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPT-QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEee-CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 7899999999999999999887655544443322 233444 5678999999999999999998999999999999998
Q ss_pred CCChHh-hHHHHHHHHH--cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 198 DGVMEQ-TVESIRMARE--AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 198 ~g~~~q-~~~~l~~~~~--~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+..... ....+..+.. .++|+++|+||+|+.+.. ...+...+....+ .. ...+.++++||++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~--~~~~~~~~~Sa~~ 144 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPI-AR--GRRWILQGTSLDD 144 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh-cC--CCceEEEEeeecC
Confidence 854322 2333333332 578999999999997543 2222222111111 01 1246788999987
No 198
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.75 E-value=2.8e-17 Score=154.81 Aligned_cols=152 Identities=21% Similarity=0.275 Sum_probs=109.8
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~ 197 (673)
|+++|++|+|||||+++|.+..+.....+++..+.. .+.. ++..+.+|||||++.|..++...+..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK-GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 789999999999999999998877666555544433 3444 4578999999999999999988999999999999998
Q ss_pred CCCh-HhhHHHHHHHH----HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 198 DGVM-EQTVESIRMAR----EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 198 ~g~~-~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
+... .+....+..+. ..++|+++++||+|+.+.... .......+... .....++++++||++|.|+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKS-ITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCccc-ccCCceEEEEEEeccCCChHHHHHH
Confidence 7432 22333343332 247899999999998754321 11122221110 0112468899999999999999998
Q ss_pred HHH
Q psy4665 273 IER 275 (673)
Q Consensus 273 i~~ 275 (673)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 854
No 199
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.75 E-value=3.3e-17 Score=158.15 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=107.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|.+..+...+.+.+..... ..+.+.+ ...+.+|||||++.|...+...+..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 57999999999999999999998876555454433322 2344422 236789999999999988877889999999999
Q ss_pred ECCCCChHhhH-H-HHHHHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHHc---------CccccccCCceeEEEeecc
Q psy4665 195 AADDGVMEQTV-E-SIRMARE--AKVPIIVAINKIDKPAADIERTKNMLLAQ---------GITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 195 da~~g~~~q~~-~-~l~~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~v~iSA~ 261 (673)
|.++....... . ++..+.. .++|+++++||+|+...... ...+... +..+....+..+++++||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhh--hhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99975433222 2 2233333 37899999999998643211 0011000 0000011123579999999
Q ss_pred CCCChhhHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERT 276 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~ 276 (673)
+|.|++++++++.+.
T Consensus 159 ~~~~v~~lf~~l~~~ 173 (175)
T cd01870 159 TKEGVREVFEMATRA 173 (175)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999999998754
No 200
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=3.2e-17 Score=157.43 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=107.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||++++.+..+.....+.+.. .....+.++. ...+.+|||||+++|..++...++.+|++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 46999999999999999999988765544443322 2233344422 247789999999999999999999999999999
Q ss_pred ECCCCChHhhHHHH-HHH----HHcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQTVESI-RMA----REAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~----~~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|.++....+....| ..+ ...++|+++++||+|+.... .+......+. + +..+++++||++|.|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~SA~~~~~i 152 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ-------W-GNVPFYETSARKRTNV 152 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH-------c-CCceEEEeeCCCCCCH
Confidence 99985443332222 222 23478999999999996432 1222222221 1 1368999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++...
T Consensus 153 ~~~f~~i~~~ 162 (168)
T cd04177 153 DEVFIDLVRQ 162 (168)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 201
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=2.1e-17 Score=168.46 Aligned_cols=155 Identities=19% Similarity=0.277 Sum_probs=112.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+|+|||||+++++++.+...+.+++. +.....+.. ++ ..+.||||||++.|..++..++..+|++++|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 3699999999999999999998887665544443 443344455 34 4678999999999999888788999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH------------cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEE
Q psy4665 194 VAADDGVMEQTV-ESIRMARE------------AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~------------~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
+|.++....+.. .++..+.. .++|+|+++||+|+... +.+++.+.+... ..+.+++
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~--------~~~~~~e 150 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD--------ENCAYFE 150 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc--------CCCEEEE
Confidence 999985543332 22333321 36899999999999642 233333322211 1357999
Q ss_pred eeccCCCChhhHHHHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
+||++|.|++++++++.+....+
T Consensus 151 vSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EeCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999998765433
No 202
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.75 E-value=1.4e-17 Score=183.93 Aligned_cols=149 Identities=26% Similarity=0.325 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh--------hhcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR--------SRGA 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~--------~~~~ 184 (673)
..++|+++|++|+|||||+|+|++... ...+.+++|.++....+.+ ++.++++|||||+.++.... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 458999999999999999999998764 4567789999988888887 67899999999997665322 2357
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
..+|++++|+|++++...+..+.|.. ..+.|+++|+||+|+....... . ....+++++||++|.
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~--------~~~~~~i~iSAktg~ 356 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------E--------ENGKPVIRISAKTGE 356 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------h--------ccCCceEEEEeeCCC
Confidence 88999999999998876665555554 4578999999999996532211 0 113578999999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNM 279 (673)
Q Consensus 265 gv~~l~~~i~~~~~~ 279 (673)
|++++++++.+....
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
No 203
>PLN03118 Rab family protein; Provisional
Probab=99.75 E-value=6.2e-17 Score=161.63 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|++|+|||||+++|++..+. ...+.++.+.....+.+++ ...+.||||||++.|..++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999987763 3334444444444455532 2478899999999999999989999999999
Q ss_pred EEECCCCChHhhHH-HHHH-HH----HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 193 VVAADDGVMEQTVE-SIRM-AR----EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 193 Vvda~~g~~~q~~~-~l~~-~~----~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
|+|+++....+... .|.. +. ..+.|+++|+||+|+.... .++........ .++++++||+++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~SAk~~ 162 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH---------GCLFLECSAKTR 162 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 99999865544432 2322 22 1357999999999996432 22222222221 357899999999
Q ss_pred CChhhHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTK 277 (673)
Q Consensus 264 ~gv~~l~~~i~~~~ 277 (673)
.|++++++++....
T Consensus 163 ~~v~~l~~~l~~~~ 176 (211)
T PLN03118 163 ENVEQCFEELALKI 176 (211)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998665
No 204
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=2.4e-17 Score=158.67 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
+..+|+++|.+|+|||||++++.+..+. ..+.+++..+.....+.+ ++ ..+.+|||+|.+.|..++..++..+|++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 4578999999999999999999998887 555565555554445555 34 4678999999999988888888999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHH-HcCCCEEEEEecCCCCCCcH---HHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMAR-EAKVPIIVAINKIDKPAADI---ERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~-~~~iP~IvviNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
++|+|+++....+.. +++..+. ..++|+++|+||+|+.+... ....+.....+ ...++++||++|.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG--------LPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcC--------CCCCEEEEeccCcc
Confidence 999999885433222 3333332 23789999999999964321 11111111111 12358999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++.+.+.
T Consensus 154 v~~lf~~l~~~ 164 (169)
T cd01892 154 SNELFTKLATA 164 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 205
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=8.8e-17 Score=160.38 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=116.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|+...+.....++++.+.....+.+.+ ...+.+|||||++.|..++...++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 47899999999999999999998877666556655555555555522 23578999999999999888888999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|+++....+.. .++..+.. .++|+++++||+|+... ..+...+..... .++++++||+++.|+
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH---------GLIFMEASAKTAQNV 156 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCCH
Confidence 999985544443 22332322 36899999999999642 223333333332 257999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKNMLL 281 (673)
Q Consensus 267 ~~l~~~i~~~~~~~~ 281 (673)
+++|+++.+..-..+
T Consensus 157 ~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 157 EEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998876654433
No 206
>PLN03110 Rab GTPase; Provisional
Probab=99.74 E-value=7.3e-17 Score=161.66 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=119.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ...+.||||||++.|..++...++.+|++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 357899999999999999999999887766667666666666666632 2378899999999999999889999999999
Q ss_pred EEECCCCChHhhHH-HHHHHHH---cCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQTVE-SIRMARE---AKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~~~-~l~~~~~---~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|.++....+... ++..+.. .++|+++++||+|+.... ..+....+... ..++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~--------~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK--------EGLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH--------cCCEEEEEeCCCCCCH
Confidence 99999865544433 3333333 478999999999985421 11111222111 1368999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKNMLL 281 (673)
Q Consensus 267 ~~l~~~i~~~~~~~~ 281 (673)
+++++++........
T Consensus 163 ~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 163 EKAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999977665543
No 207
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.74 E-value=2.3e-17 Score=157.81 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=102.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCc-chhhhhhccccCCeEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAA-FSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~-f~~~~~~~~~~aD~~vlV 193 (673)
+|+++|++|+|||||+++++...+.....+.+. ......+.+ ++. .+.+|||||++. +.......++.+|++++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 489999999999999999988766444333322 222233334 333 578999999985 345566688999999999
Q ss_pred EECCCCChHhhHHH-HHHHH-----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 194 VAADDGVMEQTVES-IRMAR-----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 194 vda~~g~~~q~~~~-l~~~~-----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+++....+..+. +..+. ..++|+++|+||+|+... ..++..+..... ..+++++||++|.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~~ 149 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL---------GCLFFEVSAAEDY 149 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc---------CCEEEEeCCCCCc
Confidence 99998654443322 22222 237899999999998532 222222222221 2579999999994
Q ss_pred -ChhhHHHHHHHH
Q psy4665 265 -NVDNLTEAIERT 276 (673)
Q Consensus 265 -gv~~l~~~i~~~ 276 (673)
|++++|+.+.+.
T Consensus 150 ~~v~~~f~~l~~~ 162 (165)
T cd04146 150 DGVHSVFHELCRE 162 (165)
T ss_pred hhHHHHHHHHHHH
Confidence 999999998764
No 208
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.74 E-value=5.1e-17 Score=156.83 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=107.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+.++.+..+...+.+.. .+.....+..++ ...+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 368999999999999999999887765544433 333333444422 246788999999999999888889999999999
Q ss_pred ECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCCc---------------HHHHHHHHHHcCccccccCCceeE
Q psy4665 195 AADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAAD---------------IERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 195 da~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|.++....+.. .++..+.. .++|+++++||+|+.... .++.....+. .+..++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~--------~~~~~~ 151 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK--------IGACEY 151 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH--------hCCCeE
Confidence 99986554432 34444443 368999999999986421 1111111111 122479
Q ss_pred EEeeccCCCChhhHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIE 274 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~ 274 (673)
+++||++|.|++++++.+.
T Consensus 152 ~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 152 IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999998764
No 209
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.74 E-value=4.8e-17 Score=162.85 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.+|+++|.+++|||||+.+|....+...+.|++...+. ..+.. ++ ..+.||||+|++.|..++..+++.+|++++|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 47999999999999999999998887776666654443 23444 33 3678899999999999999899999999999
Q ss_pred EECCCCChHhhH-HHHH-HHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHH---------cCccccccCCceeEEEeec
Q psy4665 194 VAADDGVMEQTV-ESIR-MARE--AKVPIIVAINKIDKPAADIERTKNMLLA---------QGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~-~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~v~iSA 260 (673)
+|.++....+.. ..|. .+.. .++|+++|+||+|+.... .. ...+.+ .+..+.+..+..+++++||
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~-~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-AT-LRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hh-hhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 999986544443 3333 2222 468999999999995421 10 111111 0111111112358999999
Q ss_pred cCCCC-hhhHHHHHHHHH
Q psy4665 261 LTGTN-VDNLTEAIERTK 277 (673)
Q Consensus 261 ~~g~g-v~~l~~~i~~~~ 277 (673)
+++.+ ++++|+......
T Consensus 158 k~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 158 RSSERSVRDVFHVATVAS 175 (222)
T ss_pred CcCCcCHHHHHHHHHHHH
Confidence 99985 999999887753
No 210
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=3.2e-17 Score=153.67 Aligned_cols=149 Identities=27% Similarity=0.334 Sum_probs=107.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
++|+++|++|+|||||+++|....+...+.++++.+.....+.. ++ ..+.+|||||+.+|..++......++.++.+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 68999999999999999999998877777788888887766666 45 6788999999999987776666666666666
Q ss_pred EECCCC-------ChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH-HHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDG-------VMEQTVESIRMAREAKVPIIVAINKIDKPAADIER-TKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g-------~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|.... ...........+.. +.|+++++||+|+...+... ....+... ...+++++||.+|.|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--------~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKL--------NGEPIIPLSAETGKN 151 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhc--------cCCceEEeecCCCCC
Confidence 665543 22233333333322 88999999999997543221 11222111 134699999999999
Q ss_pred hhhHHHHHH
Q psy4665 266 VDNLTEAIE 274 (673)
Q Consensus 266 v~~l~~~i~ 274 (673)
+.++++++.
T Consensus 152 v~~~~~~l~ 160 (161)
T TIGR00231 152 IDSAFKIVE 160 (161)
T ss_pred HHHHHHHhh
Confidence 999998863
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=1.8e-17 Score=165.69 Aligned_cols=113 Identities=35% Similarity=0.474 Sum_probs=91.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcccc-------------------ccccceeeeEEEEEEEec----CCeEEEEEeCCC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVK-------------------SEFGGITQHIGAFVVTLK----SGEQVTFLDTPG 172 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~-------------------~~~~g~T~~~~~~~v~~~----~~~~i~liDTpG 172 (673)
++|+++||+|+|||||+++|+...... ....++|.......+.+. ....+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 579999999999999999998643221 123566665555555442 236799999999
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~ 228 (673)
|.+|...+..++..+|++++|+|++++...++.++++.+...++|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999888889999999999999999988888888888877789999999999985
No 212
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.74 E-value=2.8e-17 Score=162.42 Aligned_cols=155 Identities=26% Similarity=0.260 Sum_probs=107.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
+|+++|++|+|||||+++|++..+.....+. +.+.....+.+ .+ ..++||||||+..|..++..++..+|++++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t-~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRT-VEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc-hhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 4899999999999999999988765443332 22333334444 34 47889999999999999888899999999999
Q ss_pred ECCCCChHhhHHHH-HHHHH----cCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 195 AADDGVMEQTVESI-RMARE----AKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~~----~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
|++++...+....| ..+.. .++|+++++||+|+..... ........... .....+++++||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE-----LDWNCGFVETSAKDNENVLE 153 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH-----hhcCCcEEEecCCCCCCHHH
Confidence 99985444333222 22222 4799999999999965211 11111111100 01135789999999999999
Q ss_pred HHHHHHHHHH
Q psy4665 269 LTEAIERTKN 278 (673)
Q Consensus 269 l~~~i~~~~~ 278 (673)
+++++.+...
T Consensus 154 l~~~l~~~~~ 163 (198)
T cd04147 154 VFKELLRQAN 163 (198)
T ss_pred HHHHHHHHhh
Confidence 9999987543
No 213
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=2e-17 Score=157.42 Aligned_cols=144 Identities=22% Similarity=0.317 Sum_probs=100.4
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCC----cchhhhhhccccCCeEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA----AFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~----~f~~~~~~~~~~aD~~vl 192 (673)
+|+++|++|+|||||+++|.+..... ..|. .+.+... .+|||||.. .+......++..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~-----~v~~~~~---~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQ-----AVEFNDK---GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccce-----EEEECCC---CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 69999999999999999988654211 1111 1222122 279999973 232233345789999999
Q ss_pred EEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 193 VVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
|+|++++........+.. ..+.|+++++||+|+.+.+.+...+.+.+.+. ..+++++||++|+|+++++++
T Consensus 71 v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 71 VHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGF-------EEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred EEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCC-------CCCEEEEECCCccCHHHHHHH
Confidence 999998765444333322 24689999999999987666555555544332 258999999999999999999
Q ss_pred HHHHHHHHH
Q psy4665 273 IERTKNMLL 281 (673)
Q Consensus 273 i~~~~~~~~ 281 (673)
+.+....-+
T Consensus 142 l~~~~~~~~ 150 (158)
T PRK15467 142 LASLTKQEE 150 (158)
T ss_pred HHHhchhhh
Confidence 988765443
No 214
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.74 E-value=3.7e-17 Score=158.70 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++++...+.....+++.... ...+... .+..+.+|||||+++|...+...+..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999998877655545433222 2333332 1345789999999999998888899999999999
Q ss_pred ECCCCChHhhHH-HHHHHH----HcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 195 AADDGVMEQTVE-SIRMAR----EAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 195 da~~g~~~q~~~-~l~~~~----~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|.++....+... .+..+. ..+.|+++++||+|+.... .......... + ..+++++||+++.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~gv 151 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-------W--GAAFLESSARENENV 151 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-------c--CCeEEEEeCCCCCCH
Confidence 999865444432 223332 2467999999999986421 1111111111 1 257899999999999
Q ss_pred hhHHHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKNML 280 (673)
Q Consensus 267 ~~l~~~i~~~~~~~ 280 (673)
.++++++.+.....
T Consensus 152 ~~l~~~l~~~~~~~ 165 (180)
T cd04137 152 EEAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998776543
No 215
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=6.2e-17 Score=177.72 Aligned_cols=154 Identities=21% Similarity=0.325 Sum_probs=118.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh--------hhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR--------SRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~--------~~~ 183 (673)
...++|+++|++|+|||||+|+|++... .....+|+|.++....+.+ ++..+++|||||+.++.... ..+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4568999999999999999999998753 4567789999988888888 68899999999986654322 246
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
++.+|++++|+|++++...+.. ++..+...++|+++|+||+|+...+.. ...... ..+++++||++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~~---~~~~~~---------~~~~~~vSak~- 345 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSLE---FFVSSK---------VLNSSNLSAKQ- 345 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcchh---hhhhhc---------CCceEEEEEec-
Confidence 7889999999999987765554 556666668999999999999654221 111111 24678999998
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~ 281 (673)
.|++++++.+.+......
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999888776654
No 216
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=4.8e-17 Score=172.22 Aligned_cols=154 Identities=22% Similarity=0.225 Sum_probs=111.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc-------hhhhhhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF-------SNMRSRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f-------~~~~~~~~~~a 187 (673)
...|+++|.||||||||+++|+........++++|..+....+.+.++.+++|+||||+... .....+.+..+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 46799999999999999999999887777888899888888888755589999999997421 22233455679
Q ss_pred CeEEEEEECCCC---ChHhhH-HHHHHHHH-----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 188 DIVVLVVAADDG---VMEQTV-ESIRMARE-----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 188 D~~vlVvda~~g---~~~q~~-~~l~~~~~-----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
|++++|+|+++. ...+.. .+.+.+.. .+.|+++|+||+|+.+.. .++..+.+.+ .+ ..++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~------~~--~~~vi~ 308 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK------AL--GKPVFP 308 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH------Hc--CCcEEE
Confidence 999999999874 222222 22233332 368999999999997542 1122222221 11 247899
Q ss_pred eeccCCCChhhHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~ 276 (673)
+||++++|++++++++.+.
T Consensus 309 iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 309 ISALTGEGLDELLYALAEL 327 (329)
T ss_pred EEccCCcCHHHHHHHHHHH
Confidence 9999999999999998764
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3e-17 Score=174.32 Aligned_cols=156 Identities=26% Similarity=0.351 Sum_probs=124.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh--------h
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS--------R 182 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~--------~ 182 (673)
-....+++|+|.||+|||||+|+|++.. ..+++.+|+|+|+-...+.+ +|.++.++||+|...-....+ .
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 4467899999999999999999999876 56788999999999999999 899999999999754433222 3
Q ss_pred ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
.+..||++++|+|++.+...+....+. +...+.|++++.||+|+......... +.....+++.+||++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~~~~~~~~i~iSa~t 360 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------KLANGDAIISISAKT 360 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------hccCCCceEEEEecC
Confidence 568999999999999987777777666 45567899999999999764331111 111234789999999
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNML 280 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~~ 280 (673)
|+|++.|.+.+.+.....
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999998776554
No 218
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=1.1e-16 Score=186.66 Aligned_cols=191 Identities=23% Similarity=0.347 Sum_probs=138.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc--------chhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA--------FSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~--------f~~~~~~~ 183 (673)
...++|+|+|++|+|||||+|+|++... .....+|+|.+.......+ ++..+.||||||++. |......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3457899999999999999999998764 4456789998887777777 678999999999763 33444557
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+..+|++++|+|++++......++++.++..++|+++|+||+|+...... .......+. ...+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~~~lg~--------~~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEFWKLGL--------GEPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHHHHcCC--------CCeEEEECCCC
Confidence 78999999999999998888888888888899999999999998643211 111111111 23579999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
.|++++++++.+...... ....... ....+-+.+-...|.|-..|+..+..
T Consensus 422 ~GI~eLl~~i~~~l~~~~-~~~~a~~-~~~~~kI~ivG~~nvGKSSLin~l~~ 472 (712)
T PRK09518 422 RGVGDLLDEALDSLKVAE-KTSGFLT-PSGLRRVALVGRPNVGKSSLLNQLTH 472 (712)
T ss_pred CCchHHHHHHHHhccccc-ccccccC-CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 999999999877653210 0000000 01122334445778899999998864
No 219
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=5.3e-17 Score=156.40 Aligned_cols=154 Identities=23% Similarity=0.245 Sum_probs=107.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+.++|+++|++|+|||||+++|.+..+.. . ..|..+....+.+ ++..+.+|||||+..|...+...++.+|++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~--~~t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-I--TPTQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-c--CCCCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 46889999999999999999999875432 1 1222333334555 578899999999999988888888999999999
Q ss_pred EECCCCCh-HhhHHHHHH----HHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVM-EQTVESIRM----AREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~-~q~~~~l~~----~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+++... ......+.. ....++|+++++||+|+.+.. .+++.+.+ +.. .......+++++||++|+|++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l---~~~-~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL---NLH-DLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc---CCc-ccCCCeEEEEEeECCCCCCHH
Confidence 99987322 222222222 233579999999999996543 23332222 211 001123467899999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++++.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999854
No 220
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=9.8e-17 Score=173.24 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=126.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc-------chhhhhhccccCC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-------FSNMRSRGAHCTD 188 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-------f~~~~~~~~~~aD 188 (673)
.-|+|+|.||||||||+|+|++.....+..+++|+......+.+.++..+.|+||||... ......+.+..+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 479999999999999999999988888888999999988888875556799999999632 1122234678899
Q ss_pred eEEEEEECCC----CChHhhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 189 IVVLVVAADD----GVMEQTVESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 189 ~~vlVvda~~----g~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
++++|+|++. ....+...+++.+.. .+.|+++|+||+|+... ....+.+.... ..+....+++++|
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~---~~~~~~~~Vi~IS 314 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV---EALGWEGPVYLIS 314 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH---HHhCCCCCEEEEE
Confidence 9999999872 222333344444444 36899999999999643 22222222210 0111123689999
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQA 318 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~ 318 (673)
|+++.|++++++++.+....- . +.++-...+......+...|+++.
T Consensus 315 A~tg~GIdeLl~~I~~~L~~~---~----------~~~~~~~~td~~~~~~~~EiiRE~ 360 (390)
T PRK12298 315 AASGLGVKELCWDLMTFIEEN---P----------REEAEEAEAPEKVEFMWDDYHREQ 360 (390)
T ss_pred CCCCcCHHHHHHHHHHHhhhC---c----------ccCCcccccCccHHHHHHHHHHHH
Confidence 999999999999997765321 0 112333444455556666666553
No 221
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.73 E-value=1.2e-16 Score=154.61 Aligned_cols=157 Identities=25% Similarity=0.292 Sum_probs=119.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|..|||||||+++|....... ...|.......+.+ ++..+++||.+|+..+...+..++..+|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE-TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee-CcEEEEEEeccccccccccceeeccccceeEE
Confidence 456789999999999999999998765433 22355566666777 68899999999999999999999999999999
Q ss_pred EEECCCCC-hHhhHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGV-MEQTVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~-~~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++.. ..+..+.+..+.. .++|+++++||+|++++ +.+++...+.-..+. ....+.++++||.+|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCCcCH
Confidence 99999743 3344444444332 47899999999999875 344444333222211 124678999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
.+.++||.+.
T Consensus 165 ~e~l~WL~~~ 174 (175)
T PF00025_consen 165 DEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 222
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=1.5e-16 Score=151.06 Aligned_cols=156 Identities=29% Similarity=0.354 Sum_probs=109.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccc-cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh--------hhhhccc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN--------MRSRGAH 185 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~-~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~--------~~~~~~~ 185 (673)
..+|+++|++|+|||||+++|++...... ..+.++.......+.. .+..+.+|||||+..... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998765332 2233343333333332 457899999999865432 2334578
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
.+|++++|+|+++.........+..+...+.|+++++||+|+... .+...+.+.... ......+++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDLLPLLEKLK----ELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHHHHHHHHHH----hccCCCceEEEEeccCCC
Confidence 899999999999875555666667777778999999999999732 222222222211 111135789999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999988653
No 223
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2.3e-16 Score=171.16 Aligned_cols=152 Identities=26% Similarity=0.285 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----ch---hhhhhccccCC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----FS---NMRSRGAHCTD 188 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----f~---~~~~~~~~~aD 188 (673)
.-|+++|.||||||||+++|++.+......+++|..+....+.+.++.+++|+||||... .. ....+.+..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 489999999999999999999988777788999999988888775578999999999632 11 22234456799
Q ss_pred eEEEEEECCCC----ChHhhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 189 IVVLVVAADDG----VMEQTVESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 189 ~~vlVvda~~g----~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
++++|+|+++. .......+.+.+.. .++|+++|+||+|+.+. .+...+.....+ .+++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~l~~~l~---------~~i~~iS 308 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLEEFKEKLG---------PKVFPIS 308 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHHHHHHHhC---------CcEEEEe
Confidence 99999999753 12222233333433 37899999999998542 222222211111 4689999
Q ss_pred ccCCCChhhHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~ 277 (673)
|++++|+++|++++.+..
T Consensus 309 A~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 309 ALTGQGLDELLYAVAELL 326 (424)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 224
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=150.86 Aligned_cols=158 Identities=24% Similarity=0.296 Sum_probs=119.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--cccccccceeeeEEEEEEEecCCeEEEEEeCCCC----------Ccchhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AAFSNMR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----------~~f~~~~ 180 (673)
...+-|+++|.+|+|||||+|+|++.. ...+..||.|+.++.+.+. ..+.|+|.||+ +.+..+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 367889999999999999999999976 6778889999999876653 23889999995 2333344
Q ss_pred hhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHH-cCccccccCCceeE
Q psy4665 181 SRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLA-QGITVEDLGGDIQA 255 (673)
Q Consensus 181 ~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~ 255 (673)
..++ ....++++++|+.++....+.+.++.+...++|+++++||+|+...+ ..+....+.+ ..... .+...+
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~---~~~~~~ 174 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP---PDDQWV 174 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC---CccceE
Confidence 4444 23678899999999999999999999999999999999999997632 3233333332 22211 112227
Q ss_pred EEeeccCCCChhhHHHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+..|+.++.|++++...|.+..
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEEecccccCHHHHHHHHHHHh
Confidence 8889999999999988887654
No 225
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=6.2e-17 Score=150.75 Aligned_cols=133 Identities=29% Similarity=0.380 Sum_probs=92.4
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCC-----cchhhhhhccccCCeEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA-----AFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~-----~f~~~~~~~~~~aD~~v 191 (673)
+|+++|++|+|||||+++|.+..+. ..+ |. .+.+ .+ .+|||||+. .|..+.. .++.+|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~--t~-----~~~~-~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKK--TQ-----AVEY-ND---GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccc--ce-----eEEE-cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 6999999999999999999987642 111 21 1223 12 689999973 2343333 578999999
Q ss_pred EEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 192 LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
+|+|++++...+...++.. ...|+++++||+|+.+.. .+...+.+...+ ..+++++||++|.|++++
T Consensus 68 lv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 68 LVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAG--------AEPIFEISSVDEQGLEAL 136 (142)
T ss_pred EEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcC--------CCcEEEEecCCCCCHHHH
Confidence 9999998776655443332 345999999999996422 222223333221 236899999999999999
Q ss_pred HHHHH
Q psy4665 270 TEAIE 274 (673)
Q Consensus 270 ~~~i~ 274 (673)
++++.
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 98873
No 226
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=9.6e-17 Score=154.63 Aligned_cols=150 Identities=25% Similarity=0.241 Sum_probs=102.7
Q ss_pred EEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc----hh---hhhhccccCCeEEE
Q psy4665 120 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF----SN---MRSRGAHCTDIVVL 192 (673)
Q Consensus 120 ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f----~~---~~~~~~~~aD~~vl 192 (673)
++|++|||||||+++|.+........+++|.+.....+.+.++.++.||||||+... .. .....+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999999876555667778777666666633789999999997432 11 22335678999999
Q ss_pred EEECCCCC------hHhh-HHHHHHHH----------HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeE
Q psy4665 193 VVAADDGV------MEQT-VESIRMAR----------EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 193 Vvda~~g~------~~q~-~~~l~~~~----------~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|+|+++.. .... ..+...+. ..+.|+++++||+|+.......... .... ......++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~-----~~~~~~~~ 154 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VREL-----ALEEGAEV 154 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHH-----hcCCCCCE
Confidence 99999863 2222 12222222 1478999999999997532211110 0110 11124579
Q ss_pred EEeeccCCCChhhHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~ 275 (673)
+++||+++.|++++++++..
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEehhhhcCHHHHHHHHHh
Confidence 99999999999999998754
No 227
>KOG0080|consensus
Probab=99.71 E-value=1.2e-16 Score=144.17 Aligned_cols=154 Identities=17% Similarity=0.129 Sum_probs=120.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|.++|.+|+|||||+-++....+......++..++....+.... ..++.+|||+|+++|+.+...+++.|.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 47899999999999999999999998877766788888888777732 23788999999999999999999999999999
Q ss_pred EECCCCChHhhHHHHH-HHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQTVESIR-MARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~~~~l~-~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|.+........++|. .+.. .++-.++|+||+|..+. +.++-....+++ .+-++++||++.+|
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h---------~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH---------RCLFIECSAKTREN 161 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh---------CcEEEEcchhhhcc
Confidence 9999866655555553 3332 24557899999998632 233333334443 45789999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++..|+.+.+.+
T Consensus 162 V~~~FeelveKI 173 (209)
T KOG0080|consen 162 VQCCFEELVEKI 173 (209)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 228
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2.3e-16 Score=173.17 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=111.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----ch---hhhhhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----FS---NMRSRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----f~---~~~~~~~~~a 187 (673)
...|+|+|.||||||||+++|++.+.....++++|+.+....+.+ .+.+++|+||||... .. ....+.+..|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 468999999999999999999998887888899999988888887 567899999999632 11 1223456779
Q ss_pred CeEEEEEECCCC-----ChHhh---HHHHH-HH----------HHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccc
Q psy4665 188 DIVVLVVAADDG-----VMEQT---VESIR-MA----------REAKVPIIVAINKIDKPAADIERTKNMLLAQGITVED 248 (673)
Q Consensus 188 D~~vlVvda~~g-----~~~q~---~~~l~-~~----------~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~ 248 (673)
|++++|+|+++. ...+. .+.+. +. ...+.|+|+|+||+|+++.. ...+.+... +..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~---l~~ 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPE---LEA 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHH---HHH
Confidence 999999999752 11111 11121 11 12468999999999997532 111111111 111
Q ss_pred cCCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 249 LGGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 249 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
. .++++++||++++|+++|++++.+....
T Consensus 313 ~--g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 313 R--GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred c--CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 2579999999999999999999877654
No 229
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=1.3e-16 Score=185.30 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=117.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh----------hhc-
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR----------SRG- 183 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~----------~~~- 183 (673)
.++|+++|++|+|||||+|+|++.+...++.+|+|.+.....+.+ ++.+++++||||+.+|.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 468999999999999999999998877788899999887777776 67899999999998875321 112
Q ss_pred -cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 184 -AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 184 -~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
...+|++++|+|+++.. +....+.++.+.++|+++++||+|+.+. ......+.+.+. + .++++++||+
T Consensus 82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~------L--G~pVvpiSA~ 151 (772)
T PRK09554 82 LSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR------L--GCPVIPLVST 151 (772)
T ss_pred hccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH------h--CCCEEEEEee
Confidence 24789999999998843 3445667778889999999999998642 222222222221 1 3689999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|+|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999987654
No 230
>KOG0093|consensus
Probab=99.71 E-value=3.3e-16 Score=139.33 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..++.++|...+|||||+-+.....+......+..+++...++.... ..++++|||+|++.|+.....+++.++++||+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 35899999999999999999999999888877778887777765532 23788999999999999999999999999999
Q ss_pred EECCCCChHhhHHHH----HHHHHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQTVESI----RMAREAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~~~~l----~~~~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|.++.......+.| +.....+.|+|+|+||||+.+. ..++..+...+.| ..++++||+.+.|+
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG---------fefFEtSaK~NinV 171 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG---------FEFFETSAKENINV 171 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC---------hHHhhhcccccccH
Confidence 999985544433333 2233468999999999999654 2344444444443 47899999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy4665 267 DNLTEAIERTKNMLLA 282 (673)
Q Consensus 267 ~~l~~~i~~~~~~~~~ 282 (673)
+++|+.+...+..-+.
T Consensus 172 k~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999888776554
No 231
>KOG0410|consensus
Probab=99.70 E-value=2.7e-17 Score=164.86 Aligned_cols=231 Identities=22% Similarity=0.236 Sum_probs=166.8
Q ss_pred cccccHHHHHHHhhcchhHHHHHhhhccc-ccccCCccccccHHHHHHHHHHhCCeeEEEccCCCccc------------
Q psy4665 27 SVIYDFQVIIDIIQKSDHLYEVMMYVDNS-VNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVAD------------ 93 (673)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------ 93 (673)
.+.||+.+++++|.+.+.+.++.+||-++ ..|..++ +.. ..+...|..|-.+.-.. ...+..
T Consensus 81 rvfDr~~~vl~if~q~a~T~earlqvalAempy~~~r--l~r--~~~hl~r~~g~~v~gsg-es~id~d~~rllr~kea~ 155 (410)
T KOG0410|consen 81 RVFDRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGR--LER--ELQHLRRQSGGQVKGSG-ESIIDRDIRRLLRIKEAQ 155 (410)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHhhhhhcCccccch--HHH--HHHHHHhcCCCcccCcc-chHhHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999 7888887 442 34455555554421111 000000
Q ss_pred CcCCcccccCC-CCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCC
Q psy4665 94 DSNGKDVERRP-PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172 (673)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG 172 (673)
....++-.++. ..+........|+|+++|++|+|||||+++|+.......+..+.|.|++.....+++|..+.+.||-|
T Consensus 156 lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvG 235 (410)
T KOG0410|consen 156 LRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVG 235 (410)
T ss_pred HHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechh
Confidence 00112211111 11112233456899999999999999999999888888888999999999989999999999999999
Q ss_pred C---------CcchhhhhhccccCCeEEEEEECCCCChHhh-HHHHHHHHHcCCC-------EEEEEecCCCCCCcHHHH
Q psy4665 173 H---------AAFSNMRSRGAHCTDIVVLVVAADDGVMEQT-VESIRMAREAKVP-------IIVAINKIDKPAADIERT 235 (673)
Q Consensus 173 ~---------~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~-~~~l~~~~~~~iP-------~IvviNK~Dl~~~~~~~~ 235 (673)
+ +.|....+ ....+|++++|+|.+++..++. ...+.-+...++| ++=|-||+|......+.
T Consensus 236 FisdLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~- 313 (410)
T KOG0410|consen 236 FISDLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE- 313 (410)
T ss_pred hhhhCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-
Confidence 5 56777666 5677999999999999876644 5566777777775 67788999975432211
Q ss_pred HHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 236 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
+ ....+++||++|.|++++.+.+.....+
T Consensus 314 -----------E----~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 314 -----------E----KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred -----------c----cCCccccccccCccHHHHHHHHHHHhhh
Confidence 0 1126899999999999999988776543
No 232
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=2.9e-16 Score=148.56 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=107.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
+|+++|++|+|||||+++|++..+.....+. +.+.....+.... ...+.+|||||++.+...+...++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT-IEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC-hhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 4899999999999999999987754444333 3344344444421 3478899999999999998888999999999999
Q ss_pred CCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 196 ADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 196 a~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
.++...... ...+..+.. .+.|+++++||+|+... ..+...+..... ..+++++||+++.|++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEW---------GCPFIETSAKDNINID 150 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHc---------CCcEEEeccCCCCCHH
Confidence 987543322 333333332 36899999999999752 222333333322 2579999999999999
Q ss_pred hHHHHHHH
Q psy4665 268 NLTEAIER 275 (673)
Q Consensus 268 ~l~~~i~~ 275 (673)
++++++.+
T Consensus 151 ~l~~~l~~ 158 (160)
T cd00876 151 EVFKLLVR 158 (160)
T ss_pred HHHHHHHh
Confidence 99998865
No 233
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=2.7e-16 Score=147.47 Aligned_cols=153 Identities=28% Similarity=0.365 Sum_probs=113.8
Q ss_pred EEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh-------hhccccCCeEE
Q psy4665 120 IMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR-------SRGAHCTDIVV 191 (673)
Q Consensus 120 ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~-------~~~~~~aD~~v 191 (673)
++|++|+|||||+++|.+.... ....++.|............+..+.+|||||+..+.... ...++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987655 555667777776666665446789999999987765433 34678899999
Q ss_pred EEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHH-HHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 192 LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNM-LLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~-l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+|+|+++................+.|+++++||+|+...+....... .... .......+++++||+++.|+++++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLI----LLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhh----cccccCCceEEEeeeccCCHHHHH
Confidence 99999998777666656667778999999999999975432221110 0111 112235789999999999999999
Q ss_pred HHHHHH
Q psy4665 271 EAIERT 276 (673)
Q Consensus 271 ~~i~~~ 276 (673)
+++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 988653
No 234
>KOG1423|consensus
Probab=99.70 E-value=7e-16 Score=153.80 Aligned_cols=248 Identities=22% Similarity=0.220 Sum_probs=155.8
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCC------c------ch
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA------A------FS 177 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~------~------f~ 177 (673)
...+...|+++|.||+|||||.|.+.+..+. .+....+|.+-....+.- +..++.|+||||.- . +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhh
Confidence 3457789999999999999999999998854 455556666655555554 66799999999931 1 22
Q ss_pred hhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHH-cCCCEEEEEecCCCCCCcHH--HHHHH------------HHHc
Q psy4665 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE-AKVPIIVAINKIDKPAADIE--RTKNM------------LLAQ 242 (673)
Q Consensus 178 ~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~-~~iP~IvviNK~Dl~~~~~~--~~~~~------------l~~~ 242 (673)
.....++..||++++|+|+++.-.+-.-..++.+.. .++|-|+++||+|....... ..... +.+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 233457789999999999997444444556666655 47899999999998532100 00111 1110
Q ss_pred -Ccc--------ccccCCceeEEEeeccCCCChhhHHHHHHHHHH-HHHhCCCCcccccCCceeeeeccccCCCcchhHH
Q psy4665 243 -GIT--------VEDLGGDIQAVPISALTGTNVDNLTEAIERTKN-MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 312 (673)
Q Consensus 243 -~~~--------~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~-~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~ 312 (673)
... ...|.+.-.+|++||++|+|++++.+++..... ..|+. +-.-.++...+.|.-
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y--------------~a~i~T~~s~e~l~~ 292 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY--------------PADIVTEESPEFLCS 292 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC--------------CcccccccCHHHHHH
Confidence 000 011333567999999999999999998855432 12211 233346666777777
Q ss_pred HHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEE-EEeeecEEeeCC-EEEeCCcceEEEEec
Q psy4665 313 AIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLAT-ALVQRGTLKKGA-IVVAGQAWAKVRSIS 376 (673)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~-~~V~~G~Lk~g~-~v~~g~~~~kvr~i~ 376 (673)
.+++..-+..+..+.+..+..-+ ..|.....|.+-. +-|. +-|.-+ .+.+|..+++++.|-
T Consensus 293 e~VReklLd~~pqEVPY~lq~~i-~~w~e~~~g~l~I~~~v~--~pK~s~~klliGkgG~ki~qI~ 355 (379)
T KOG1423|consen 293 ESVREKLLDHLPQEVPYNLQVRI-LSWKERPAGVLFIQVEVV--CPKNSQKKLLIGKGGKKISQIG 355 (379)
T ss_pred HHHHHHHHhhCccccCcceEEEE-EEeeecCCcEEEEEEEEE--cCCCcceeEEEcCCCccHHHHH
Confidence 77776655666666666665554 3455444444321 1111 112222 467888877777654
No 235
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=5.3e-16 Score=152.67 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=108.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc--ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC----------cchhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA----------AFSNMR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~--~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~----------~f~~~~ 180 (673)
...++|+++|++|+|||||+++|++..+ .....++.|..+.... + +.++.||||||+. .|..+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 4678999999999999999999998652 2333455666554322 2 3689999999963 233333
Q ss_pred hhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEE
Q psy4665 181 SRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 181 ~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
..++ ..++++++|+|++.+......+.+..+...++|+++++||+|+.+.. .++..+.+.... ... ..+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l---~~~--~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKAL---KFG--DDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHH---Hhc--CCceE
Confidence 3333 34578889999988777666666777777899999999999996432 222222222211 111 35789
Q ss_pred EeeccCCCChhhHHHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~ 277 (673)
++||+++.|++++++.+.+..
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999987653
No 236
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.69 E-value=7e-16 Score=151.00 Aligned_cols=153 Identities=23% Similarity=0.273 Sum_probs=105.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|++|+|||||+++|....+.....+++...+. ..+.+.+ ...+.+|||||++.|.......++.+|++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 47999999999999999999877665444343322222 2334421 235789999999988877766778999999999
Q ss_pred ECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCCc-------------HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 195 AADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAAD-------------IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 195 da~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
|.++....+.. .++..+.. .++|+++++||+|+.+.. .++.....+.. +..++++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e 152 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI--------GAKKYME 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh--------CCcEEEE
Confidence 99875444332 23333332 368999999999985421 11111111221 1247999
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||++|.|++++++++.+..
T Consensus 153 ~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 153 CSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999997654
No 237
>KOG0095|consensus
Probab=99.69 E-value=2.7e-16 Score=140.01 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=118.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
.++|+++|..|+|||+|+.+++.+-+.+..-.++..++...+++.++ ..++++|||+|+++|++....+++.|+.++||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 46899999999999999999999999888877788888878888743 23788999999999999999999999999999
Q ss_pred EECCCCCh----HhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVM----EQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~----~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|.+.... +.+...++.....++--|+|+||+|+.+.. +++.-+...+.. +.-++++||+...|++
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q--------dmyfletsakea~nve 158 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ--------DMYFLETSAKEADNVE 158 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh--------hhhhhhhcccchhhHH
Confidence 99998544 344444444445566789999999996431 122222222111 2347899999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
.||..+.-.
T Consensus 159 ~lf~~~a~r 167 (213)
T KOG0095|consen 159 KLFLDLACR 167 (213)
T ss_pred HHHHHHHHH
Confidence 999887543
No 238
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.69 E-value=8.3e-16 Score=154.54 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=102.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccc-cCCeEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAH-CTDIVVL 192 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~-~aD~~vl 192 (673)
.+|+++|.+|+|||||+++|..+.+. ....+....+.....+.+. ....+.+|||||++.+ .....+. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 37999999999999999999877764 3333322223333444442 2356889999999833 2233445 8999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++....+. .+++..+.. .++|+|+|+||+|+.... .++..+.... + .++++++||++|.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-------~--~~~~~e~SA~~~~ 149 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-------F--DCKFIETSAGLQH 149 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-------c--CCeEEEecCCCCC
Confidence 999998644332 233333433 468999999999996432 1111111111 1 3578999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 239
>KOG0079|consensus
Probab=99.68 E-value=5.4e-16 Score=138.09 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=125.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+.+|+|.+++|||||+-++....+..++..++..++...++..+.. .++.+|||+|++.|+.+...+++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 356789999999999999999999999888888888988888888532 3788999999999999999999999999999
Q ss_pred EECCCCChHhh-HHHHHHHHHc--CCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVMEQT-VESIRMAREA--KVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~~--~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|.+++..... .++++.++.. .+|-++|+||.|.++.. .++........ .+.++++||+...|++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m---------gie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQM---------GIELFETSAKENENVE 158 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhc---------Cchheehhhhhcccch
Confidence 99999776654 4555555542 57899999999997642 33333333333 4678999999999999
Q ss_pred hHHHHHHHHHHH
Q psy4665 268 NLTEAIERTKNM 279 (673)
Q Consensus 268 ~l~~~i~~~~~~ 279 (673)
..|..|.+....
T Consensus 159 ~mF~cit~qvl~ 170 (198)
T KOG0079|consen 159 AMFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999998776543
No 240
>KOG0087|consensus
Probab=99.68 E-value=4.4e-16 Score=147.91 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=123.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..++|+++|.+++|||-|+.++....+......++...+....+.. +++ +.+||||+|+++|+.....+++.|-+++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 4578999999999999999999999999888888999988888877 454 6789999999999999999999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
||+|.+...+.+. .++++.++. .++++++++||+||... ..++........ ...++++||..+.
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~---------~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE---------GLFFLETSALDAT 162 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhc---------CceEEEecccccc
Confidence 9999987655444 345566654 47899999999999541 122233222222 2468999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|+++.|+.+...+
T Consensus 163 NVe~aF~~~l~~I 175 (222)
T KOG0087|consen 163 NVEKAFERVLTEI 175 (222)
T ss_pred cHHHHHHHHHHHH
Confidence 9999997765544
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=142.47 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=124.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccc-------cccc---ceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-------SEFG---GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS 181 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-------~~~~---g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~ 181 (673)
.....+|++.|+.++||||++.++....... .... .+|..+....+.+.++..+.|+|||||++|..++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 4467889999999999999999998765311 1122 36666666666665668999999999999999999
Q ss_pred hccccCCeEEEEEECCCCChHhhHHHHHHHHHcC-CCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK-VPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~-iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
-..+.++++++++|++.+......+.++.+...+ +|++|++||.|+.++. ++.+.+.+.... ...++|+.+
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-------~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL-------LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc-------CCCceeeee
Confidence 9999999999999999988877778888888777 9999999999998875 445555544332 147899999
Q ss_pred ccCCCChhhHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIE 274 (673)
Q Consensus 260 A~~g~gv~~l~~~i~ 274 (673)
|..+++..+.++.+.
T Consensus 160 a~e~~~~~~~L~~ll 174 (187)
T COG2229 160 ATEGEGARDQLDVLL 174 (187)
T ss_pred cccchhHHHHHHHHH
Confidence 999999877766653
No 242
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.68 E-value=1.6e-15 Score=144.33 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=115.1
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
+|+++|++++|||||+++|.+..+.....+++..+.....+.. ++. .+.+|||+|++.|..++...+..+|++++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999998887766666555665566665 343 5889999999999998888889999999999
Q ss_pred ECCCCChHhhHHHH-HHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q~~~~l-~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|.++....+....| ..+.. .+.|+++++||.|+.+. +.++..+...+. ..+++++||+++.|+.
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL---------GVPYFEVSAKNGENVK 150 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT---------TSEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHh---------CCEEEEEECCCCCCHH
Confidence 99985444333322 33332 25799999999998652 334444444443 2689999999999999
Q ss_pred hHHHHHHHHH
Q psy4665 268 NLTEAIERTK 277 (673)
Q Consensus 268 ~l~~~i~~~~ 277 (673)
+++..+.+..
T Consensus 151 ~~f~~~i~~i 160 (162)
T PF00071_consen 151 EIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 243
>KOG0086|consensus
Probab=99.67 E-value=8.8e-16 Score=137.33 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=126.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..++.++|+.|.|||+|+.++....+......++..+++...+.... ..++++|||+|++.|+.....+++.|-+++||
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 46899999999999999999999999888888888888888887732 23788999999999999999999999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
+|+++....... .++..++. .++-+++++||-|+.......+.+ ..... . .....+.++||++|+|+++.
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflE-As~Fa--q---Enel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-ASRFA--Q---ENELMFLETSALTGENVEEA 162 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHH-HHhhh--c---ccceeeeeecccccccHHHH
Confidence 999985544332 33334443 456689999999996432221111 11110 0 11356889999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCccccc
Q psy4665 270 TEAIERTKNMLLA-QGITVEDLG 291 (673)
Q Consensus 270 ~~~i~~~~~~~~~-~~~~~ee~~ 291 (673)
|-.....+-.-++ ++++++...
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~g 185 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMG 185 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHcc
Confidence 8887766654444 446766643
No 244
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=4.6e-16 Score=176.87 Aligned_cols=145 Identities=25% Similarity=0.378 Sum_probs=111.2
Q ss_pred eCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh------hhc--cccCCeEEEE
Q psy4665 122 GHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR------SRG--AHCTDIVVLV 193 (673)
Q Consensus 122 G~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~------~~~--~~~aD~~vlV 193 (673)
|.+|+|||||+|+|++.....++.+|+|.+.....+.+ ++.++++|||||+++|.... ... ...+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999998887888899999988877777 67789999999998876531 112 2478999999
Q ss_pred EECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 194 VAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 194 vda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
+|+++. +...+...++.+.++|+++++||+|+.+... ....+.+.+. + ..+++++||++|+|+++++++
T Consensus 80 vDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~------l--g~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 80 VDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER------L--GVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred ecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH------c--CCCEEEEECCCCCCHHHHHHH
Confidence 999873 3345555666778999999999999854221 1111222221 1 358999999999999999999
Q ss_pred HHHHH
Q psy4665 273 IERTK 277 (673)
Q Consensus 273 i~~~~ 277 (673)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 97653
No 245
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=2.6e-15 Score=147.79 Aligned_cols=149 Identities=18% Similarity=0.149 Sum_probs=97.9
Q ss_pred CEEEEEeCCCCChhHHHH-HHhcCcc-----ccccccceee-eEEEEE--------EEec-CCeEEEEEeCCCCCcchhh
Q psy4665 116 PVVTIMGHVDHGKTTLLD-TLRNTSV-----VKSEFGGITQ-HIGAFV--------VTLK-SGEQVTFLDTPGHAAFSNM 179 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~-~L~~~~~-----~~~~~~g~T~-~~~~~~--------v~~~-~~~~i~liDTpG~~~f~~~ 179 (673)
.+|+++|.+++|||||+. ++.+..+ ...+.|++.. +..... ...+ ....+.||||||++.+ +
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 579999999999999996 5544432 2333344321 111111 1221 2347889999999763 4
Q ss_pred hhhccccCCeEEEEEECCCCChHhhHH--HHHHHHH--cCCCEEEEEecCCCCCC----------------------cHH
Q psy4665 180 RSRGAHCTDIVVLVVAADDGVMEQTVE--SIRMARE--AKVPIIVAINKIDKPAA----------------------DIE 233 (673)
Q Consensus 180 ~~~~~~~aD~~vlVvda~~g~~~q~~~--~l~~~~~--~~iP~IvviNK~Dl~~~----------------------~~~ 233 (673)
+..+++.+|++++|+|.++....+... ++..+.. .+.|+++|+||+|+... ..+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 455788999999999999865554432 3344433 36899999999998642 112
Q ss_pred HHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
+..+..++. .++++++||++|.|++++|+.+.+
T Consensus 161 e~~~~a~~~---------~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 161 TGRAVAKEL---------GIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHHHh---------CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 222222222 358999999999999999998865
No 246
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=7.6e-15 Score=146.96 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
...+|+++|++|+|||||+++++.+.+...+.+++..++....+... ....+.+|||||++.|..++...+..+|++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 34789999999999999999888777665555555544444444332 23478899999999999888878889999999
Q ss_pred EEECCCCChHhhHHHH-HHHH--HcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 193 VVAADDGVMEQTVESI-RMAR--EAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l-~~~~--~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
|+|.++....+....| ..+. ..++|+++++||+|+.+... .+........ ...++++||++|.|+++
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKK---------NLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHc---------CCEEEEEeCCCCCCHHH
Confidence 9999986665544333 2222 24689999999999864321 1111222111 35789999999999999
Q ss_pred HHHHHHHHH
Q psy4665 269 LTEAIERTK 277 (673)
Q Consensus 269 l~~~i~~~~ 277 (673)
.+.++.+..
T Consensus 159 ~f~~ia~~l 167 (215)
T PTZ00132 159 PFLWLARRL 167 (215)
T ss_pred HHHHHHHHH
Confidence 999987654
No 247
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.64 E-value=4.4e-15 Score=141.25 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=98.7
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
+|+++|++|+|||||+.++....+.....+ +.... ...+.+ ++ ..+.+|||+|.+.+ ..++.+|++++|+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~-~~~i~~-~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~ 73 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRF-KKEVLV-DGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVF 73 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-Cccce-EEEEEE-CCEEEEEEEEECCCCCch-----hHHhcCCEEEEEE
Confidence 699999999999999999988776544322 11122 234555 44 45889999999753 2456799999999
Q ss_pred ECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCCcHHHHHH-HHHHcCccccccCCceeEEEeeccCCCChhh
Q psy4665 195 AADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAADIERTKN-MLLAQGITVEDLGGDIQAVPISALTGTNVDN 268 (673)
Q Consensus 195 da~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~~~~~~~~-~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 268 (673)
|.++....+.. .++..+.. .++|+++++||+|+...+...+.. ...+. ......+.++++||++|.|+++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~----~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQL----CADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHH----HHHhCCCcEEEEecCCCCCHHH
Confidence 99997666553 34444433 357999999999984321111111 11110 0001136899999999999999
Q ss_pred HHHHHHH
Q psy4665 269 LTEAIER 275 (673)
Q Consensus 269 l~~~i~~ 275 (673)
+|+.+.+
T Consensus 150 ~f~~~~~ 156 (158)
T cd04103 150 VFQEAAQ 156 (158)
T ss_pred HHHHHHh
Confidence 9998864
No 248
>KOG0467|consensus
Probab=99.64 E-value=4.3e-15 Score=163.18 Aligned_cols=114 Identities=32% Similarity=0.448 Sum_probs=99.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc----------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV----------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~----------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
...++++++.|++||||||.+.|..++.. ....+|+|.......... +++.++|||+|||.+|
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCccch
Confidence 46789999999999999999999765422 223478888877666443 7889999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
......+.+.+|++++++|+.+|+..||...++++-..+...++|+||||+
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 999999999999999999999999999999999998889999999999995
No 249
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.2e-15 Score=165.28 Aligned_cols=148 Identities=26% Similarity=0.398 Sum_probs=119.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh------hcc--cc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS------RGA--HC 186 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~------~~~--~~ 186 (673)
..+|+++|.||+|||||.|+|++.+...++.||.|.+.....+.. .++++.++|+||..++..... +++ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 345999999999999999999999999999999999999888888 678899999999766553321 222 56
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-----cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-----DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+|+++-|+||++ -+......-++.+.++|+++++|++|.... |.++..+.+ .+|++++||+
T Consensus 82 ~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L------------GvPVv~tvA~ 147 (653)
T COG0370 82 PDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLL------------GVPVVPTVAK 147 (653)
T ss_pred CCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHh------------CCCEEEEEee
Confidence 799999999986 445566666778899999999999998432 333333332 4799999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++.+.+.+..
T Consensus 148 ~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 148 RGEGLEELKRAIIELA 163 (653)
T ss_pred cCCCHHHHHHHHHHhc
Confidence 9999999999887643
No 250
>KOG0091|consensus
Probab=99.63 E-value=2.2e-15 Score=136.56 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=126.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..++.++|.+-+|||||+..++.+++..-..|+...++-++.+++..|+ +++||||+|++.|++....+++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 4578899999999999999999999988888888888877777776666 57899999999999999999999999999
Q ss_pred EEECCCCChHhhHHHHH-HHHH-cCCC----EEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 193 VVAADDGVMEQTVESIR-MARE-AKVP----IIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~-~~~~-~~iP----~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
|+|.++.......+.|- .+.. .+-| +.+|+.|+|+... +.++.+......+ ..++++||++|
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------M~FVETSak~g 158 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------MAFVETSAKNG 158 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---------ceEEEecccCC
Confidence 99999865555444442 2222 1223 6889999999643 3444444444444 36899999999
Q ss_pred CChhhHHHHHHHHHHHHHhCC
Q psy4665 264 TNVDNLTEAIERTKNMLLAQG 284 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~ 284 (673)
.|+++.++.+.+..-..+.+|
T Consensus 159 ~NVeEAF~mlaqeIf~~i~qG 179 (213)
T KOG0091|consen 159 CNVEEAFDMLAQEIFQAIQQG 179 (213)
T ss_pred CcHHHHHHHHHHHHHHHHhcC
Confidence 999999999988887776554
No 251
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=2.1e-15 Score=138.09 Aligned_cols=135 Identities=30% Similarity=0.416 Sum_probs=101.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC----CcchhhhhhccccCCeEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----AAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----~~f~~~~~~~~~~aD~~v 191 (673)
.+|.++|++++|||||+++|.+..... ..|+.+ .+.+ .++||||- ..|.......+..||+++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i-----~~~~----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAI-----EYYD----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc----Ccccee-----Eecc----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 469999999999999999999865421 223333 2212 26999993 344444444668999999
Q ss_pred EEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC--CCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 192 LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP--AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~--~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
+|.|++++...- --..+..++.|+|-|+||+|++ +++.++.++.|+..|.. .++++|+.+|+|+++|
T Consensus 69 ll~dat~~~~~~---pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--------~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 69 LLQDATEPRSVF---PPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--------EIFEVSAVTGEGIEEL 137 (143)
T ss_pred EEecCCCCCccC---CchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC--------CeEEEECCCCcCHHHH
Confidence 999999843221 1233455689999999999998 67888888888887762 4699999999999999
Q ss_pred HHHHH
Q psy4665 270 TEAIE 274 (673)
Q Consensus 270 ~~~i~ 274 (673)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 99875
No 252
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=8.5e-15 Score=148.17 Aligned_cols=145 Identities=28% Similarity=0.292 Sum_probs=104.0
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhccccCCe
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGAHCTDI 189 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~~~aD~ 189 (673)
+|+++|++|+|||||+++|++........+++|.+.....+.+ ++.++++|||||+.+.. ......++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 5899999999999999999998766667788888777777777 67899999999975432 223346789999
Q ss_pred EEEEEECCCCChHhhHHHHHH--------------------------------------------HHH------------
Q psy4665 190 VVLVVAADDGVMEQTVESIRM--------------------------------------------ARE------------ 213 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~~~l~~--------------------------------------------~~~------------ 213 (673)
+++|+|+++... +.....+. +++
T Consensus 81 il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 81 ILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999976432 11111111 111
Q ss_pred ---------------cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 214 ---------------AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 214 ---------------~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
.-+|+++|+||+|+.+. ++... +. ...+++++||++|.|++++++.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~--~~~~~-~~----------~~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--EELDL-LA----------RQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH--HHHHH-Hh----------cCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 12589999999998642 22221 11 12358999999999999999988764
No 253
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=8.8e-15 Score=145.07 Aligned_cols=159 Identities=22% Similarity=0.357 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEe-cCCeEEEEEeCCCCCcchhhhhhccccC-CeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTL-KSGEQVTFLDTPGHAAFSNMRSRGAHCT-DIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~-~~~~~i~liDTpG~~~f~~~~~~~~~~a-D~~vlV 193 (673)
|+|+++|++|||||||+++|....+.... +.++.......... ..+..+.+||||||.+|...+..+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999988654432 22222222222211 1356899999999999998888888888 999999
Q ss_pred EECCCCC--hHhhHHHHHH----HH--HcCCCEEEEEecCCCCCCcH-HHHHHHHHHc--------Ccc-----------
Q psy4665 194 VAADDGV--MEQTVESIRM----AR--EAKVPIIVAINKIDKPAADI-ERTKNMLLAQ--------GIT----------- 245 (673)
Q Consensus 194 vda~~g~--~~q~~~~l~~----~~--~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~--------~~~----------- 245 (673)
+|+++.. .....+.+.. .. ..++|+++++||+|+..+.. ..+.+.+... ...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999852 1222222222 11 14799999999999976432 2222222210 000
Q ss_pred ------------ccccCCceeEEEeeccCCC-ChhhHHHHHHH
Q psy4665 246 ------------VEDLGGDIQAVPISALTGT-NVDNLTEAIER 275 (673)
Q Consensus 246 ------------~~~~~~~~~~v~iSA~~g~-gv~~l~~~i~~ 275 (673)
+......+.+++.|++.+. +++++.+|+.+
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 1111246788999998876 58888888754
No 254
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=1.8e-14 Score=137.12 Aligned_cols=152 Identities=22% Similarity=0.336 Sum_probs=103.3
Q ss_pred EEEEeCCCCChhHHHHHHhcCccc--cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc----------hhhhhhcc-
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF----------SNMRSRGA- 184 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~--~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f----------~~~~~~~~- 184 (673)
|+++|++|+|||||++.|.+.... .+...+.|.... .+.. ...+.++||||+... ......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 789999999999999999954433 233334444332 2333 238999999997542 22222222
Q ss_pred --ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 185 --HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 185 --~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
..++++++++|.++.......+.++.+...+.|+++++||+|+..... ......+... +..+....+++++||+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKE---LKLFEIDPPIILFSSL 154 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHH---HHhccCCCceEEEecC
Confidence 356789999999987777777778888888999999999999954321 1111122111 1102234688999999
Q ss_pred CCCChhhHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERT 276 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~ 276 (673)
++.++.++++++.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
No 255
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.61 E-value=5.9e-15 Score=136.64 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=104.8
Q ss_pred EEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCC
Q psy4665 120 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 120 ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
++|++|+|||||+++|.+..........+..+.....+... .+..+.+|||||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999877622222222233333333321 25679999999999888877778899999999999999
Q ss_pred CChHhhHHHH-----HHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHH
Q psy4665 199 GVMEQTVESI-----RMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273 (673)
Q Consensus 199 g~~~q~~~~l-----~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i 273 (673)
+........+ ......+.|+++++||+|+............... ......+++++|+..+.|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL-----AKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH-----HhhcCCcEEEEecCCCCChHHHHHHH
Confidence 7666555443 2334468899999999999754433222101110 01124689999999999999999887
Q ss_pred H
Q psy4665 274 E 274 (673)
Q Consensus 274 ~ 274 (673)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 4
No 256
>KOG0468|consensus
Probab=99.61 E-value=2.8e-14 Score=154.11 Aligned_cols=116 Identities=34% Similarity=0.515 Sum_probs=96.8
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccc-----------------ccccceeeeEEEEEEEecC----CeEEEEEeC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----------------SEFGGITQHIGAFVVTLKS----GEQVTFLDT 170 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-----------------~~~~g~T~~~~~~~v~~~~----~~~i~liDT 170 (673)
..+.++|+++||-.||||+|++.|....... ...+|.++.....++...+ .+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3467899999999999999999996543211 1236777666655554432 235889999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
|||.+|...+..+++.+|++++|+|+.+|++.++.+.++++-+.+.|+++|+||+|+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHH
Confidence 999999999999999999999999999999999999999999999999999999997
No 257
>KOG0469|consensus
Probab=99.61 E-value=1.9e-14 Score=150.85 Aligned_cols=115 Identities=30% Similarity=0.468 Sum_probs=96.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------------c----ccccccceeeeEEEEEEEec---------------C
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------------V----VKSEFGGITQHIGAFVVTLK---------------S 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------------~----~~~~~~g~T~~~~~~~v~~~---------------~ 161 (673)
...++..++.|++||||||.+.|.... + .....+++|+..++..+.+. +
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 456889999999999999999996432 1 12235788887776654331 2
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
+.-++|||.|||.+|++....+++..|++++|+|.-+|+..||...++++....+.-++++||+|+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 346899999999999999999999999999999999999999999999999888888899999997
No 258
>KOG1489|consensus
Probab=99.61 E-value=5.4e-15 Score=148.47 Aligned_cols=154 Identities=23% Similarity=0.225 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhcccc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGAHC 186 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~~~ 186 (673)
-...|+++|.||+|||||+++|...+..+..++++|..+....+.+++...+++-|.||.-.-. ....+.+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3567999999999999999999999999999999999998888888666679999999952111 111234566
Q ss_pred CCeEEEEEECCCC---C-hHhhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEE
Q psy4665 187 TDIVVLVVAADDG---V-MEQTVESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 187 aD~~vlVvda~~g---~-~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
|+.+++|+|.+.+ . ..|....+..+.. ...|.++|+||+|++++.... .+.+...-. ...+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq-------~~~V~p 346 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQ-------NPHVVP 346 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcC-------CCcEEE
Confidence 9999999999986 2 2233333333333 367999999999997433222 233333211 235899
Q ss_pred eeccCCCChhhHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIER 275 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~ 275 (673)
+||++++++.++.+.+.+
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999887754
No 259
>KOG0075|consensus
Probab=99.60 E-value=6.3e-15 Score=131.32 Aligned_cols=157 Identities=21% Similarity=0.242 Sum_probs=114.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
..+.++|-.++|||||+|.+..+.+... .+.|..+..+.+.- .+..+.+||.||+..|..+++++.+.++++++|+|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~ed--miptvGfnmrk~tk-gnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhh--hcccccceeEEecc-CceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 4589999999999999999887665433 34455555555544 55688999999999999999999999999999999
Q ss_pred CCCCC-hHhhHHHHHHHH----HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 196 ADDGV-MEQTVESIRMAR----EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 196 a~~g~-~~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
|.++. .+..++.+..+. -.++|+++.+||.|++++-... ..+.+.++. .-....+.++.+|++...|++.+.
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~-sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLS-SITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCcc-ccccceEEEEEEEEcCCccHHHHH
Confidence 99832 223333333332 3589999999999999863221 122222221 011235789999999999999999
Q ss_pred HHHHHHHH
Q psy4665 271 EAIERTKN 278 (673)
Q Consensus 271 ~~i~~~~~ 278 (673)
+|+.+...
T Consensus 175 ~Wli~hsk 182 (186)
T KOG0075|consen 175 DWLIEHSK 182 (186)
T ss_pred HHHHHHhh
Confidence 99987643
No 260
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.59 E-value=2e-14 Score=142.00 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=88.5
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec------CCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK------SGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~------~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
+|+++|.+++|||||++++.+..+...+.+++..++....+.+. ....+.||||+|++.|..++...++.+|++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~i 81 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGI 81 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEE
Confidence 69999999999999999999998877666665555544445442 124688999999999999999899999999
Q ss_pred EEEEECCCCChHhhHHHH-HHHHH----------------------cCCCEEEEEecCCCCC
Q psy4665 191 VLVVAADDGVMEQTVESI-RMARE----------------------AKVPIIVAINKIDKPA 229 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l-~~~~~----------------------~~iP~IvviNK~Dl~~ 229 (673)
|+|+|.++....+....| ..+.. .++|+++|+||+|+.+
T Consensus 82 IlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 82 ILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999997665544333 33322 2689999999999964
No 261
>KOG0466|consensus
Probab=99.59 E-value=8.1e-16 Score=152.49 Aligned_cols=239 Identities=22% Similarity=0.280 Sum_probs=160.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEec-----------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLK----------------------------- 160 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~----------------------------- 160 (673)
....+|+-+||+.+||||++.++.+-. |..+-.+.+|+..+.......
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 346789999999999999999997643 333334555555443221110
Q ss_pred --C-----CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc
Q psy4665 161 --S-----GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD-GVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD 231 (673)
Q Consensus 161 --~-----~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~ 231 (673)
. -+.+.|+|+|||+-....+..++...|+++|++.+++ ..++||.+++....-++.. ++++-||+|+...+
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKES 195 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHH
Confidence 0 0247899999999999999999999999999999987 6789999999888777765 88899999997533
Q ss_pred HHHHHHHHHHcCccc-cccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchh
Q psy4665 232 IERTKNMLLAQGITV-EDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 310 (673)
Q Consensus 232 ~~~~~~~l~~~~~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~L 310 (673)
.. .++..+....+ .......|++|+||.-+.|++-+.+++...
T Consensus 196 ~A--~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk---------------------------------- 239 (466)
T KOG0466|consen 196 QA--LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK---------------------------------- 239 (466)
T ss_pred HH--HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhc----------------------------------
Confidence 21 11111110000 111124678877777777766665555432
Q ss_pred HHHHHHHHHhhhcccCCCCCeEEEEEEEEee--------cCCcEEEEEEeeecEEeeCCEEEeCCc------c--eEEEE
Q psy4665 311 TEAIVAQAEIMHLKADYGGPVEAMIVESKFD--------THRGKLATALVQRGTLKKGAIVVAGQA------W--AKVRS 374 (673)
Q Consensus 311 l~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~--------~~~G~v~~~~V~~G~Lk~g~~v~~g~~------~--~kvr~ 374 (673)
.+.+..++..|...+|+.++.. .-.|-++-+-+..|.|+.|+.+-.-+. . .+.+.
T Consensus 240 ---------IPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~P 310 (466)
T KOG0466|consen 240 ---------IPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRP 310 (466)
T ss_pred ---------CCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEee
Confidence 2233445666777888887755 235678889999999999998854321 1 22333
Q ss_pred -------ec--ccccceeccCccccccCcEEEeeeCC
Q psy4665 375 -------IS--RKTLINTALGTVQRTSGTVKISLGFK 402 (673)
Q Consensus 375 -------i~--~~~v~~a~~G~~~~~~g~v~~i~gl~ 402 (673)
++ ..+++.|.||-. +++-+.++
T Consensus 311 i~SrI~sL~AE~n~L~~AvPGGL------IGVGT~~D 341 (466)
T KOG0466|consen 311 IFSRIVSLFAEQNDLQFAVPGGL------IGVGTKMD 341 (466)
T ss_pred HHHHHHHHHhhhccceeecCCce------eeeccccC
Confidence 33 678999999999 88434433
No 262
>KOG0070|consensus
Probab=99.58 E-value=1.2e-14 Score=136.21 Aligned_cols=159 Identities=21% Similarity=0.236 Sum_probs=122.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..+..+|.++|--+|||||++.+|..+++... . .|...+...+.+ .+.++++||..|++.++..+..+++.++++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-v--PTiGfnVE~v~y-kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-V--PTIGFNVETVEY-KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-C--CccccceeEEEE-cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 34557899999999999999999988876555 3 356677777887 6889999999999999999999999999999
Q ss_pred EEEECCCC--ChHhhHHHHHHHHH---cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDG--VMEQTVESIRMARE---AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g--~~~q~~~~l~~~~~---~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|+++. ..+.-.+..+.+.. .+.|++++.||.|++++ +..++.+.+.-..+.- ....+-.++|.+|+|
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~----~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS----RNWHIQSTCAISGEG 165 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC----CCcEEeecccccccc
Confidence 99999983 22222333334333 36899999999999876 4455555554433322 234678899999999
Q ss_pred hhhHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKN 278 (673)
Q Consensus 266 v~~l~~~i~~~~~ 278 (673)
+.+.++|+.+...
T Consensus 166 L~egl~wl~~~~~ 178 (181)
T KOG0070|consen 166 LYEGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999977653
No 263
>KOG0073|consensus
Probab=99.58 E-value=4.4e-14 Score=128.65 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=115.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|.++|..|+||||++++|.+...... ..|..+...++.+ ++.++++||..|+..++..|..++..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i---~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI---SPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc---CCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 3467899999999999999999998763222 2344455555666 78999999999999999999999999999999
Q ss_pred EEECCCCC-hHhhHHHHHHH----HHcCCCEEEEEecCCCCCC-cHHHHHHHH--HHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGV-MEQTVESIRMA----REAKVPIIVAINKIDKPAA-DIERTKNML--LAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~-~~q~~~~l~~~----~~~~iP~IvviNK~Dl~~~-~~~~~~~~l--~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++.. +.++...+..+ +-.+.|++++.||.|++++ +.+.+...+ .+.. -...++++.+||.+|+
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-----ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-----KSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-----cccCceEEEEeccccc
Confidence 99998843 33344444433 2357899999999999864 333333221 1111 0125789999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
++.+-++|+..-
T Consensus 165 ~l~~gidWL~~~ 176 (185)
T KOG0073|consen 165 DLLEGIDWLCDD 176 (185)
T ss_pred cHHHHHHHHHHH
Confidence 999999998654
No 264
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.57 E-value=3.1e-14 Score=127.95 Aligned_cols=106 Identities=25% Similarity=0.347 Sum_probs=83.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc---------hhhhhhcccc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF---------SNMRSRGAHC 186 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f---------~~~~~~~~~~ 186 (673)
+|+++|.+|+|||||+|+|++.. ...+..++.|.......+.+ ++..+.|+||||..+- .....+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 48999999999999999999864 45666678888886656666 6788899999997432 1123345588
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEec
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK 224 (673)
+|++++|+|+++.......+.++.++ .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 99999999988855666677778786 88999999998
No 265
>KOG0088|consensus
Probab=99.55 E-value=9.8e-15 Score=131.48 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
-.++++++|..-+|||||+-++...+|......+..-.+....+.+.+ ...+.+|||+|++.|..+-.-+++.+++++|
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 357899999999999999999988776543322111112222233322 2368899999999999999999999999999
Q ss_pred EEECCCCChHhhHHHH----HHHHHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTVESI----RMAREAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l----~~~~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|.++....|-...| +.+....+.+++|+||+|+... ..++........ ...++++||+.+.|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv---------GA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV---------GALYMETSAKDNVG 162 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh---------chhheecccccccC
Confidence 9999997776654443 3334456789999999999542 233333333333 24689999999999
Q ss_pred hhhHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKN 278 (673)
Q Consensus 266 v~~l~~~i~~~~~ 278 (673)
+.++|+.+...+-
T Consensus 163 i~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 163 ISELFESLTAKMI 175 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 266
>KOG0395|consensus
Probab=99.54 E-value=1.1e-13 Score=135.74 Aligned_cols=157 Identities=23% Similarity=0.162 Sum_probs=118.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|.+|+|||+|+.++....+...+.|++. +.....+..+ ....+.++||+|++.|..++..++..+|+.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 457899999999999999999999999888777665 4444455553 22357789999999999999999999999999
Q ss_pred EEECCCCChHhhHH-HHHHHH----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQTVE-SIRMAR----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~~~-~l~~~~----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|++.++..+.+... .+.++. ...+|+++|+||+|+... ..++....... +.++++++||+...
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~---------~~~~f~E~Sak~~~ 151 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARS---------WGCAFIETSAKLNY 151 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh---------cCCcEEEeeccCCc
Confidence 99999965554433 333332 235799999999999753 12222222111 24679999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
+++++|..+.......
T Consensus 152 ~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 152 NVDEVFYELVREIRLP 167 (196)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999998876653
No 267
>PLN00023 GTP-binding protein; Provisional
Probab=99.53 E-value=1.3e-13 Score=142.79 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=90.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC--------------CeEEEEEeCCCCCcchh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS--------------GEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~--------------~~~i~liDTpG~~~f~~ 178 (673)
....+|+++|+.++|||||+++|.+..+.....+++..++....+.+.+ ...+.||||+|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3457899999999999999999999887766666665555445455421 24588999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhH-HHHHHHHHc---------------CCCEEEEEecCCCCC
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTV-ESIRMAREA---------------KVPIIVAINKIDKPA 229 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~-~~l~~~~~~---------------~iP~IvviNK~Dl~~ 229 (673)
++..+++.+|++|+|+|.++....... .+++.+... ++|+++|+||+|+..
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 999999999999999999985444333 333444332 479999999999954
No 268
>KOG0097|consensus
Probab=99.52 E-value=2.5e-13 Score=119.95 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=120.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
-.++-.|+|.-|+|||+|+..+....+...-...+...++.+.++. .|. ++++|||+|+++|+.....+++.+-+++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 3567789999999999999999998887777777888888888877 444 6789999999999999888999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHHcC---CCEEEEEecCCCCC---CcHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMAREAK---VPIIVAINKIDKPA---ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~~~---iP~IvviNK~Dl~~---~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|.+........ .++..++.+- ..++++.||.|+.. ...++.++...+.+ ..+++.||++|+
T Consensus 89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng---------l~fle~saktg~ 159 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG---------LMFLEASAKTGQ 159 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC---------eEEEEecccccC
Confidence 99999875443333 2333344443 34888999999954 34555555555544 468999999999
Q ss_pred ChhhHHHHHHHHHHHHHhC
Q psy4665 265 NVDNLTEAIERTKNMLLAQ 283 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~~ 283 (673)
|+++.|-.....+.+.+.+
T Consensus 160 nvedafle~akkiyqniqd 178 (215)
T KOG0097|consen 160 NVEDAFLETAKKIYQNIQD 178 (215)
T ss_pred cHHHHHHHHHHHHHHhhhc
Confidence 9998776655555444433
No 269
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=135.76 Aligned_cols=165 Identities=22% Similarity=0.175 Sum_probs=116.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|.+|+|||||+++|.+..+...+.++++............ ..++.+|||+|+++|..++..+...++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 7899999999999999999999998887777766555544443322 456889999999999999999999999999999
Q ss_pred ECCC-CChHhh-HHHHHHHHHc---CCCEEEEEecCCCCCCcHHH--HHHHHH-------HcCccccccCCceeEEEeec
Q psy4665 195 AADD-GVMEQT-VESIRMAREA---KVPIIVAINKIDKPAADIER--TKNMLL-------AQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 195 da~~-g~~~q~-~~~l~~~~~~---~iP~IvviNK~Dl~~~~~~~--~~~~l~-------~~~~~~~~~~~~~~~v~iSA 260 (673)
|... ....+. ..+...+... +.|++++.||+|+....... ....+. ..............++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9987 333333 3444444443 58999999999997643211 111100 00000001011234899999
Q ss_pred c--CCCChhhHHHHHHHHHHHH
Q psy4665 261 L--TGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 261 ~--~g~gv~~l~~~i~~~~~~~ 280 (673)
+ ++.++.+++..+.......
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHh
Confidence 9 9999999999887766443
No 270
>KOG1191|consensus
Probab=99.50 E-value=1.3e-13 Score=146.14 Aligned_cols=164 Identities=23% Similarity=0.276 Sum_probs=118.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc--------chhhh-hh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA--------FSNMR-SR 182 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~--------f~~~~-~~ 182 (673)
...+.|+|+|+||+|||||+|+|.+.. ..+++.+|+|.|.....++. +|.++.|.||+|... ..-++ .+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 456899999999999999999999876 56788899999999888987 899999999999754 11112 24
Q ss_pred ccccCCeEEEEEECCCCChHhhHHHHHHHHHc------------CCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccC
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQTVESIRMAREA------------KVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~------------~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~ 250 (673)
.+..||++++|+|+..+.+++.....+.+... ..|++++.||.|+...-. ........ +.-....
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-~~~~~~~~--~~~~~~~ 421 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-EMTKIPVV--YPSAEGR 421 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc-cccCCcee--ccccccC
Confidence 67889999999999887788777766666542 257889999999853200 00000000 0001111
Q ss_pred Cce-eEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 251 GDI-QAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 251 ~~~-~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
... ...++|+++++|++.|.+.+.+.....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 123 345599999999999999987766544
No 271
>KOG0081|consensus
Probab=99.49 E-value=5.9e-14 Score=126.59 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=113.4
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-C-------C--eEEEEEeCCCCCcchhhhhhcccc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-S-------G--EQVTFLDTPGHAAFSNMRSRGAHC 186 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~-------~--~~i~liDTpG~~~f~~~~~~~~~~ 186 (673)
+...+|.+|+||||++.+.+.+.+......+..+++....+.++ . + ..+++|||+|+++|+++.....+.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 45678999999999999999888766655555555555554442 1 1 147899999999999999988999
Q ss_pred CCeEEEEEECCCCCh-HhhHHHHHHHHHc---CCC-EEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 187 TDIVVLVVAADDGVM-EQTVESIRMAREA---KVP-IIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 187 aD~~vlVvda~~g~~-~q~~~~l~~~~~~---~iP-~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
|=+.+|++|.++.-. -....++.+++.. .-| +++++||+|+++.. .++..+...++ ..|++++
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky---------glPYfET 161 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY---------GLPYFET 161 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh---------CCCeeee
Confidence 999999999987433 2334555555432 345 99999999997532 23333333343 3689999
Q ss_pred eccCCCChhhHHHHHHHHHHHHHh
Q psy4665 259 SALTGTNVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~~~~~~ 282 (673)
||-+|.|+++..+.+....-+-++
T Consensus 162 SA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHH
Confidence 999999999888877666544443
No 272
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.49 E-value=4.2e-13 Score=132.49 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=99.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccc--cc---eeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-----hhhcc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--GG---ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM-----RSRGA 184 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~--~g---~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~-----~~~~~ 184 (673)
+.+|+++|.+|+|||||+|+|++........ .+ +|.... .+.......+++|||||..+.... ....+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 3679999999999999999999854322111 11 122211 122222347899999998543222 22235
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc----------HHHHHHHHHHcCc-cccc-cCCc
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD----------IERTKNMLLAQGI-TVED-LGGD 252 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~----------~~~~~~~l~~~~~-~~~~-~~~~ 252 (673)
..+|++++|.| ++........++.+...+.|+++|+||+|+...+ .++..+.+++.-. .+.. ....
T Consensus 79 ~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 156 (197)
T cd04104 79 SEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE 156 (197)
T ss_pred cCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67898888754 3456666777788888899999999999984321 2233333332211 0111 1224
Q ss_pred eeEEEeecc--CCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISAL--TGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~--~g~gv~~l~~~i~~~~ 277 (673)
.+++.+|+. .+.++..|.+.+....
T Consensus 157 p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 157 PPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred CCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 688999998 5788888888776544
No 273
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=137.39 Aligned_cols=153 Identities=26% Similarity=0.261 Sum_probs=111.1
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC-----------Ccchhhhhhccc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-----------AAFSNMRSRGAH 185 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~-----------~~f~~~~~~~~~ 185 (673)
-|+++|.||+|||||+++++..+.....++++|..+....+....+..+.+-|.||. .+|.. .+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr----HIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR----HIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH----HHH
Confidence 578999999999999999999999999999999998888887756778999999994 23333 345
Q ss_pred cCCeEEEEEECCCCC----hHhhHHHHHHHHH-----cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCcee
Q psy4665 186 CTDIVVLVVAADDGV----MEQTVESIRMARE-----AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 186 ~aD~~vlVvda~~g~----~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
.|-++++|+|.+... ......+...+.. .+.|.++|+||+|++.. ..+...+.+.+.. + ...
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~------~-~~~ 309 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL------G-WEV 309 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc------C-CCc
Confidence 588999999998632 2222333333433 37899999999996543 2222333333221 1 122
Q ss_pred EEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 255 AVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
..++||.+++|+++|...+.+.....
T Consensus 310 ~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 310 FYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred ceeeehhcccCHHHHHHHHHHHHHHh
Confidence 33399999999999999988877654
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.47 E-value=6.8e-13 Score=134.17 Aligned_cols=152 Identities=28% Similarity=0.377 Sum_probs=112.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC-Ccch------hhhhhccc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH-AAFS------NMRSRGAH 185 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~-~~f~------~~~~~~~~ 185 (673)
...-.|+++|.|++|||||+++|++.......++++|..+....+.+ +|.+++++|+||. +... ......++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 45567999999999999999999999999999999999999888988 7999999999995 2222 22234569
Q ss_pred cCCeEEEEEECCCCChH------------------------------------------hhHHHHHH-HHH---------
Q psy4665 186 CTDIVVLVVAADDGVME------------------------------------------QTVESIRM-ARE--------- 213 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~------------------------------------------q~~~~l~~-~~~--------- 213 (673)
.||++++|+|+...... -+...++. +.+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 99999999999853210 01111111 111
Q ss_pred ------------------cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 214 ------------------AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 214 ------------------~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
.-+|.+.++||+|+.+ .+.+. .+.+ ..+++++||..+.|+++|.+.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~--~e~~~-~l~~----------~~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG--LEELE-RLAR----------KPNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC--HHHHH-HHHh----------ccceEEEecccCCCHHHHHHHHHH
Confidence 1358999999999875 22222 2222 237899999999999999998877
Q ss_pred HHH
Q psy4665 276 TKN 278 (673)
Q Consensus 276 ~~~ 278 (673)
...
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 654
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=8.9e-13 Score=145.27 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=81.4
Q ss_pred eEEEEEeCCCCCc-----chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcC--CCEEEEEecCCCCCCc---H
Q psy4665 163 EQVTFLDTPGHAA-----FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK--VPIIVAINKIDKPAAD---I 232 (673)
Q Consensus 163 ~~i~liDTpG~~~-----f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~--iP~IvviNK~Dl~~~~---~ 232 (673)
.++.|+||||... +...+...+..+|++++|+|+..+........++.+...+ .|+++++||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 4689999999633 2334456889999999999999988888888888888877 4999999999986422 3
Q ss_pred HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
+.+.+.+..... ........++|+||+.|.|++++.+.+..
T Consensus 310 E~Lle~V~~~L~--q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 310 DQVRALISGTLM--KGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHH--hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344443322100 00112357999999999999999999876
No 276
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=8.8e-13 Score=130.10 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcccccc--ccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh-------hhh----h
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN-------MRS----R 182 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~--~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~-------~~~----~ 182 (673)
++|+++|.+|+|||||+|+|++....... .++.|.........+ ++.+++++||||..++.. ... .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 47999999999999999999988654333 456777777666666 788999999999765531 111 2
Q ss_pred ccccCCeEEEEEECCCCChHhhHHHHHHHHHc-C----CCEEEEEecCCCCCCc-HHHHHHHH-HHcCccccccCCceeE
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQTVESIRMAREA-K----VPIIVAINKIDKPAAD-IERTKNML-LAQGITVEDLGGDIQA 255 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~-~----iP~IvviNK~Dl~~~~-~~~~~~~l-~~~~~~~~~~~~~~~~ 255 (673)
....+|++++|+++.+ ........++.+... + .++++++|++|....+ .++..... ......++..++....
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3466899999999988 777777777777653 3 5799999999975432 22211111 0001111222333222
Q ss_pred EEe---eccCCCChhhHHHHHHHHHHH
Q psy4665 256 VPI---SALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 256 v~i---SA~~g~gv~~l~~~i~~~~~~ 279 (673)
+.- |+..+.++.+|++.+.+....
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 221 356677788888887766543
No 277
>KOG0076|consensus
Probab=99.44 E-value=2.5e-13 Score=125.00 Aligned_cols=163 Identities=20% Similarity=0.204 Sum_probs=115.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc---ccc--cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV---VKS--EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCT 187 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~---~~~--~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~a 187 (673)
+....|.|+|.-|+||||++.++..... ..- ..-..|......++.+ .+..+.|||..|++...+++..++..|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChHHHHHHHHHHHHHh
Confidence 4567899999999999999999854321 111 1123455555666777 478999999999999999999999999
Q ss_pred CeEEEEEECCCCC-hHh----hHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 188 DIVVLVVAADDGV-MEQ----TVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 188 D~~vlVvda~~g~-~~q----~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++++||||++.. .+. .......-...++|+++.+||-|+.++-. .++...+....... ..+.++.|+||.
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~---~rd~~~~pvSal 170 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIP---RRDNPFQPVSAL 170 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcC---CccCccccchhh
Confidence 9999999999832 222 22333333446899999999999976422 22222221111111 125789999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~ 279 (673)
+|+|+++-.+|+......
T Consensus 171 ~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hcccHHHHHHHHHHHHhh
Confidence 999999999999877654
No 278
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.43 E-value=3.8e-13 Score=109.95 Aligned_cols=79 Identities=19% Similarity=0.422 Sum_probs=67.2
Q ss_pred EeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC
Q psy4665 567 VLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI 646 (673)
Q Consensus 567 ~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~ 646 (673)
.+|+..|++.|.|+ ++. .|+| +|..|++++|+++ +|..+ |.|.||++++++|++|++|+||+|+|++..
T Consensus 3 ~p~ki~Ilp~~vFr--~~~-~IvG-~V~~G~ik~G~~l----~G~~i--G~I~sIe~~~k~v~~A~~G~eVai~Ieg~~- 71 (81)
T PF14578_consen 3 RPGKIRILPVCVFR--QSD-AIVG-EVLEGIIKPGYPL----DGRKI--GRIKSIEDNGKNVDEAKKGDEVAISIEGPT- 71 (81)
T ss_dssp -SEEEEEEEEEEEC--TCC-EEEE-EEEEEEEETT-EE----CSSCE--EEEEEEEETTEEESEEETT-EEEEEEET---
T ss_pred CceEEEECCcCEEe--cCC-eEEE-EEeeeEEeCCCcc----CCEEE--EEEEEeEECCcCccccCCCCEEEEEEeCCc-
Confidence 46899999999998 456 8999 9999999999888 88876 999999999999999999999999999977
Q ss_pred CCCCCCEEEE
Q psy4665 647 EFEPGDTIVC 656 (673)
Q Consensus 647 ~~~~gD~i~~ 656 (673)
++++||+++.
T Consensus 72 ~i~eGDiLyV 81 (81)
T PF14578_consen 72 QIKEGDILYV 81 (81)
T ss_dssp TB-TT-EEEE
T ss_pred cCCCCCEEeC
Confidence 9999999984
No 279
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=1.5e-12 Score=131.15 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=98.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc--ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~--~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+..|+++|++|+|||||++.|..... ......|+ ..+....+.+++++||||+. ......+..+|++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 4567899999999999999999986421 11111221 11122257789999999964 2233467889999
Q ss_pred EEEEECCCCChHhhHHHHHHHHHcCCCE-EEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 191 VLVVAADDGVMEQTVESIRMAREAKVPI-IVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l~~~~~~~iP~-IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
++|+|++.+...++.+.+..+...++|. ++++||+|+.+. ..+.....++.... .++..+.+++++||++.-.
T Consensus 108 llviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~--~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW--TEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH--HhhCCCCcEEEEeeccCCC
Confidence 9999999999999999999998889995 459999999642 23334444433111 1122357899999998644
No 280
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.43 E-value=1.2e-12 Score=112.02 Aligned_cols=83 Identities=41% Similarity=0.533 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCP 408 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~ 408 (673)
.++|+|+..+++.|.+++++|++|+|++||++++|..++|||.|+ ++++++|.||++ |. +.||+++|.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~------V~-I~G~~~~P~-- 72 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTP------VE-ILGLKGVPQ-- 72 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCc------EE-EcCCCCCCC--
Confidence 689999999999999999999999999999999999999999998 899999999999 99 789999998
Q ss_pred CCCeEeecCChhhHH
Q psy4665 409 SGDVDGSVEALLDVF 423 (673)
Q Consensus 409 ~Gd~l~~~~~~~~~~ 423 (673)
+||.|...+|++++.
T Consensus 73 aGd~~~~~~se~~Ak 87 (95)
T cd03702 73 AGDKFLVVESEKEAK 87 (95)
T ss_pred CCCEEEEeCCHHHHH
Confidence 999999999987775
No 281
>KOG0083|consensus
Probab=99.43 E-value=1.6e-13 Score=120.18 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=110.5
Q ss_pred EEeCCCCChhHHHHHHhcCcccccc-ccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC
Q psy4665 120 IMGHVDHGKTTLLDTLRNTSVVKSE-FGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 120 ivG~~n~GKSTLl~~L~~~~~~~~~-~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~ 197 (673)
++|.+.+|||+|+-++..+.+.... ..+..+++....+..++ ..++++|||+|+++|++....+++.+|.+++++|..
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888776654433 22333444444444422 237889999999999999999999999999999998
Q ss_pred CCChHhh-HHHHHHHHHc---CCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 198 DGVMEQT-VESIRMAREA---KVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 198 ~g~~~q~-~~~l~~~~~~---~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+...... ..++..++++ .+.+.+++||+|+... ..++-+.....+ .+|+.++||++|.|++-.|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y---------~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY---------GIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH---------CCCceeccccccccHhHHH
Confidence 8655444 3344455543 5678999999999431 122223333333 3689999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy4665 271 EAIERTKNMLLA 282 (673)
Q Consensus 271 ~~i~~~~~~~~~ 282 (673)
-.+.+...++-.
T Consensus 153 ~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 153 LAIAEELKKLKM 164 (192)
T ss_pred HHHHHHHHHhcc
Confidence 998887766543
No 282
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.42 E-value=4.6e-13 Score=120.64 Aligned_cols=109 Identities=25% Similarity=0.305 Sum_probs=73.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccc----cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVV----KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~----~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+|+++|++|+|||||+++|.+.... .....+.+.......+.. ....+.+||++|++.+.......+..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccchhhcCcEEEE
Confidence 5899999999999999999988765 122223333322222221 23358899999999888776666899999999
Q ss_pred EEECCCCChHhh-HH---HHHHHHH--cCCCEEEEEecCC
Q psy4665 193 VVAADDGVMEQT-VE---SIRMARE--AKVPIIVAINKID 226 (673)
Q Consensus 193 Vvda~~g~~~q~-~~---~l~~~~~--~~iP~IvviNK~D 226 (673)
|+|+++....+. .+ .+..+.. .++|+++++||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999998543322 22 2333332 4699999999998
No 283
>KOG0393|consensus
Probab=99.42 E-value=7.1e-13 Score=127.44 Aligned_cols=161 Identities=22% Similarity=0.269 Sum_probs=117.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+++++|...+|||+|+..+..+.+...+.|+..-.+ ...+..++|+ .+.||||+|+++|..++...+..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 456899999999999999999999999988888777433 3445553344 5678999999999999888999999999
Q ss_pred EEEECCCCChHhh--HHHHHHHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHHcC---------ccccccCCceeEEEe
Q psy4665 192 LVVAADDGVMEQT--VESIRMARE--AKVPIIVAINKIDKPAADIERTKNMLLAQG---------ITVEDLGGDIQAVPI 258 (673)
Q Consensus 192 lVvda~~g~~~q~--~~~l~~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~v~i 258 (673)
++++..+...... ..++..++. .++|+|+|++|.||.+ +. ...+.+...+ ..+....+-..++++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD-DP-STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh-CH-HHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999888554432 334444444 3789999999999973 22 2222222221 112222345789999
Q ss_pred eccCCCChhhHHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~ 277 (673)
||++..|+.++|+......
T Consensus 160 Sa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred hhhhhCCcHHHHHHHHHHH
Confidence 9999999999998876553
No 284
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=7.1e-13 Score=131.68 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=116.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc-------chhhhhhcc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-------FSNMRSRGA 184 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-------f~~~~~~~~ 184 (673)
...+.+|.++|.+|+|||||+|+|+.+...+...-+.+.++..+.....++..++||||||.++ +.......+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4567788899999999999999999876554444444444444433333678899999999765 555566678
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHc--CCCEEEEEecCCCCCC--c--------HHHHHHHHHHcCccccc-cCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREA--KVPIIVAINKIDKPAA--D--------IERTKNMLLAQGITVED-LGG 251 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~--~--------~~~~~~~l~~~~~~~~~-~~~ 251 (673)
...|++++++++.+.....+.+.++.+... +.|+++++|.+|+... + ....++.+.+....+.+ +..
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999998777777777766543 5799999999998321 1 11222222222111111 111
Q ss_pred ceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 252 DIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 252 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
--|++..|+..+.|++++..++....
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred cCCeEEeccccCccHHHHHHHHHHhC
Confidence 34788888899999999999987764
No 285
>PTZ00099 rab6; Provisional
Probab=99.39 E-value=7.1e-12 Score=121.35 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=91.5
Q ss_pred cccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhH-HHHHHHHH---c
Q psy4665 140 VVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTV-ESIRMARE---A 214 (673)
Q Consensus 140 ~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~-~~l~~~~~---~ 214 (673)
+...+.+++..++....+.+.+ ...+.||||||++.|..++..+++.||++|+|+|+++....+.. .++..+.. .
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~ 84 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK 84 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4444556666666555555532 24788999999999999999999999999999999986543333 33333322 3
Q ss_pred CCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 215 KVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 215 ~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
++|+++|+||+|+... +.++........ ...++++||++|.|++++|+++.+...
T Consensus 85 ~~piilVgNK~DL~~~~~v~~~e~~~~~~~~---------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTYEEGMQKAQEY---------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999642 223332222221 246899999999999999999987654
No 286
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=8.3e-12 Score=131.31 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=63.1
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-----------------------CCeEEEEEeCCCC-
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-----------------------SGEQVTFLDTPGH- 173 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-----------------------~~~~i~liDTpG~- 173 (673)
|+++|.||+|||||+|+|++..+.....+++|.++......+. ...++.+|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999998887888888877665444320 2247999999997
Q ss_pred ---Ccchhhhh---hccccCCeEEEEEECCC
Q psy4665 174 ---AAFSNMRS---RGAHCTDIVVLVVAADD 198 (673)
Q Consensus 174 ---~~f~~~~~---~~~~~aD~~vlVvda~~ 198 (673)
..+..+.. ..++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 44554433 35799999999999973
No 287
>KOG4252|consensus
Probab=99.37 E-value=3.1e-13 Score=124.35 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=123.5
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+.++++|+|..++||||++.+++.+-+...+...+..++....+... .+.++.+|||+|++.|......+++.|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 4567899999999999999999999988877777777766655554432 234677999999999999999899999999
Q ss_pred EEEEECCCCChHh-hHHHHHHHHH--cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 191 VLVVAADDGVMEQ-TVESIRMARE--AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 191 vlVvda~~g~~~q-~~~~l~~~~~--~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+||++.++..... +.++.+.... ..+|.+++-||+|+.+. +..+++...+.. ...++.+|++...
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l---------~~RlyRtSvked~ 167 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL---------HKRLYRTSVKEDF 167 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh---------hhhhhhhhhhhhh
Confidence 9999999865443 4444444433 47999999999999653 223333333332 3457889999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy4665 265 NVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~ 282 (673)
|+..+|..+.+...+.+.
T Consensus 168 NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999887665553
No 288
>KOG0071|consensus
Probab=99.35 E-value=1.1e-11 Score=109.92 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+...+..+|-.++||||++..|..+..... -.|..+....+.+ .+..+++||..|++..+..+.+++..+.++|+|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~---ipTvGFnvetVty-kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc---ccccceeEEEEEe-eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 356799999999999999999987664332 2345566677777 678999999999999999999999999999999
Q ss_pred EECCCC--ChHhhHHHHHHHH---HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDG--VMEQTVESIRMAR---EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g--~~~q~~~~l~~~~---~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|+.+. ..+.-.+..+.+. ....|+++..||.|++++- +.++...+.-... -+....+.|+||.+|.|+.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~----r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERI----RDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccc----cCCccEeeccccccchhHH
Confidence 999874 2222233333332 3478999999999999873 4444443322111 1124567899999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
+-+.|+...
T Consensus 168 eglswlsnn 176 (180)
T KOG0071|consen 168 EGLSWLSNN 176 (180)
T ss_pred HHHHHHHhh
Confidence 988887654
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=3e-12 Score=122.66 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=71.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEe--cCCeEEEEEeCCCCCcchhhhhhc---cccCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTL--KSGEQVTFLDTPGHAAFSNMRSRG---AHCTD 188 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~--~~~~~i~liDTpG~~~f~~~~~~~---~~~aD 188 (673)
+.+.|.|+|+.|+|||+|..+|..+...... +.+.... .+.. ..+..+.++|+|||++.+...... ...+-
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~---tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV---TSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee---ccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 4578999999999999999999988532211 1111111 1111 245689999999999988655544 78899
Q ss_pred eEEEEEECCCCChHhhHHHHHHH-------H--HcCCCEEEEEecCCCCCCcH-HHHHHHH
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMA-------R--EAKVPIIVAINKIDKPAADI-ERTKNML 239 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~-------~--~~~iP~IvviNK~Dl~~~~~-~~~~~~l 239 (673)
++|+|+|++. ...+..+..+++ . ..++|++|++||.|+..+.. ..++..|
T Consensus 78 ~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 78 GIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp EEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred EEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 9999999985 222222222222 1 24678999999999977643 3344433
No 290
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.32 E-value=1.4e-11 Score=106.01 Aligned_cols=83 Identities=40% Similarity=0.565 Sum_probs=79.0
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCP 408 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~ 408 (673)
.++|+|+..+++.|.+++++|++|+|++||++++|..+++||.|. ++.+.+|.||++ |. +.||++.|.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~------v~-i~g~~~~p~-- 72 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTP------VE-ILGLKDVPK-- 72 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCC------EE-EeeecCCcc--
Confidence 689999999999999999999999999999999999999999998 889999999999 98 999999999
Q ss_pred CCCeEeecCChhhHH
Q psy4665 409 SGDVDGSVEALLDVF 423 (673)
Q Consensus 409 ~Gd~l~~~~~~~~~~ 423 (673)
+||.|...+++.++.
T Consensus 73 aGd~~~~~~~e~~a~ 87 (95)
T cd03701 73 AGDGVLVVASEKEAK 87 (95)
T ss_pred CCCEEEEeCCCHHHH
Confidence 999999999987765
No 291
>KOG1490|consensus
Probab=99.32 E-value=5.9e-13 Score=140.75 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=149.2
Q ss_pred cccHHHHHHHhhcchhHHHHHh-hhcccccccCCccccccHHHHHHHHHHhCCeeEEEc-cCCCccc-------------
Q psy4665 29 IYDFQVIIDIIQKSDHLYEVMM-YVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVAD------------- 93 (673)
Q Consensus 29 ~~~~~~i~~~~~~~~~~~~~~~-~vd~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~~~~------------- 93 (673)
-+++.-|++-|+.....++++- .++...+-...+..|+.+..+.......+..+..+- ..++...
T Consensus 59 ~~kL~~il~~FP~~~~ihPfy~dL~~~ly~~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~ 138 (620)
T KOG1490|consen 59 TEKLDDILQEFPKLNDIHPFYADLLNILYDRDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMA 138 (620)
T ss_pred HHHHHHHHHhcccccccCcchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4677789999999999999987 555443333333334444444333333333322111 1111100
Q ss_pred --------CcCCcccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEE
Q psy4665 94 --------DSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQV 165 (673)
Q Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i 165 (673)
-+..++..++...+.+..++..+++.++|.||+||||+++.++...+.+.+++++|..+...++.+ .-.++
T Consensus 139 tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy-kYlrw 217 (620)
T KOG1490|consen 139 TIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY-KYLRW 217 (620)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh-heeee
Confidence 001122223333444566778899999999999999999999999999999999998888777766 45689
Q ss_pred EEEeCCCCCcch----hh--hh---hccccCCeEEEEEECCC--CChH-hhHHHHHHHHH--cCCCEEEEEecCCCCC-C
Q psy4665 166 TFLDTPGHAAFS----NM--RS---RGAHCTDIVVLVVAADD--GVME-QTVESIRMARE--AKVPIIVAINKIDKPA-A 230 (673)
Q Consensus 166 ~liDTpG~~~f~----~~--~~---~~~~~aD~~vlVvda~~--g~~~-q~~~~l~~~~~--~~iP~IvviNK~Dl~~-~ 230 (673)
+++||||.-+-. +. +. .-++.-.+++++.|.+. |.+. +...++..++. .+.|+|+|+||+|... .
T Consensus 218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 999999953221 11 11 11244456888888886 3322 22233333333 4889999999999843 2
Q ss_pred cHHH----HHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 231 DIER----TKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 231 ~~~~----~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
+.++ ..+.+... +.++++.+|+.+.+|+-++.....+.
T Consensus 298 dL~~~~~~ll~~~~~~--------~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 298 DLDQKNQELLQTIIDD--------GNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred ccCHHHHHHHHHHHhc--------cCceEEEecccchhceeeHHHHHHHH
Confidence 3222 22333322 24789999999999998876655443
No 292
>KOG0090|consensus
Probab=99.29 E-value=2e-11 Score=116.60 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccc---cCCe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAH---CTDI 189 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~---~aD~ 189 (673)
..++.|.++|..|+|||+|+-.|+.+..... -+.+......+.+ +....+++|.|||.+.+......+. .+-+
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~r~-gs~~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATYRL-GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeEee-cCcceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 3457899999999999999999998743221 1223344444555 3445899999999988766554554 7889
Q ss_pred EEEEEECCCCC--hHhhHH----HHHHH--HHcCCCEEEEEecCCCCCCcHHH-HHHHHHHc--------C----ccc--
Q psy4665 190 VVLVVAADDGV--MEQTVE----SIRMA--REAKVPIIVAINKIDKPAADIER-TKNMLLAQ--------G----ITV-- 246 (673)
Q Consensus 190 ~vlVvda~~g~--~~q~~~----~l~~~--~~~~iP~IvviNK~Dl~~~~~~~-~~~~l~~~--------~----~~~-- 246 (673)
+|+|+|+..-. ....-+ .+-.. ...++|+++++||.|+..+...+ +++++... . ...
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 99999987521 111112 22122 23467899999999997664433 22222211 0 000
Q ss_pred ----------------cccC-CceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 247 ----------------EDLG-GDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 247 ----------------~~~~-~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
.... ..+.+.+.|++++ +++++.+|+.+.
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0111 3567889999998 899999888754
No 293
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=8.1e-11 Score=122.01 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcccccc----------ccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhh---
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSE----------FGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNM--- 179 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~----------~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~--- 179 (673)
..+|+++|++|+|||||+|+|++..+.... .++++.......+.. +| .++++|||||+.++...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999988754332 222333333344444 44 36899999997554321
Q ss_pred ------------------hh-----hcc--ccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 180 ------------------RS-----RGA--HCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 180 ------------------~~-----~~~--~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
.. ..+ ..+|+++++++++. +..+.+.+.++.+.. ++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 00 111 24788999998874 677777888888875 899999999999964
No 294
>KOG0074|consensus
Probab=99.25 E-value=3.4e-11 Score=106.97 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=109.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..++.++|-.|+||||++..|.+..+.. -..|..++...+......++++||..|+...+..|..++...|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 456789999999999999999998766432 12344555566666445799999999999999999999999999999
Q ss_pred EEECCCC-ChHhh-HH---HHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDG-VMEQT-VE---SIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g-~~~q~-~~---~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++. .++.. .+ .+...+-..+|+.++.||.|+..+. .++...-+.-.++... ...+-.+||.+++|+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdR----swhIq~csals~eg~ 167 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDR----SWHIQECSALSLEGS 167 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhc----eEEeeeCccccccCc
Confidence 9998873 22222 22 2233334578999999999986432 2222222211122111 357788999999999
Q ss_pred hhHHHHHHH
Q psy4665 267 DNLTEAIER 275 (673)
Q Consensus 267 ~~l~~~i~~ 275 (673)
.+-.+|+..
T Consensus 168 ~dg~~wv~s 176 (185)
T KOG0074|consen 168 TDGSDWVQS 176 (185)
T ss_pred cCcchhhhc
Confidence 888887754
No 295
>KOG1532|consensus
Probab=99.24 E-value=4.2e-11 Score=118.10 Aligned_cols=173 Identities=23% Similarity=0.399 Sum_probs=111.2
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCccc-------------c--------------------------ccccceee
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV-------------K--------------------------SEFGGITQ 150 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-------------~--------------------------~~~~g~T~ 150 (673)
....+++.|.++|..|+||||++.+|...-.. . +..+||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 34567889999999999999999999532100 0 00123322
Q ss_pred eEEEEEEEec----------CCeEEEEEeCCCC-Ccchh-----hhhh--ccccCCeEEEEEECCCCChHhh-----HHH
Q psy4665 151 HIGAFVVTLK----------SGEQVTFLDTPGH-AAFSN-----MRSR--GAHCTDIVVLVVAADDGVMEQT-----VES 207 (673)
Q Consensus 151 ~~~~~~v~~~----------~~~~i~liDTpG~-~~f~~-----~~~~--~~~~aD~~vlVvda~~g~~~q~-----~~~ 207 (673)
..+.+...++ +...+.++||||+ +.|.= .... +....-++++|+|......+.+ ...
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 2211111110 1234889999997 44431 1111 2244567889999876444333 444
Q ss_pred HHHHHHcCCCEEEEEecCCCCCC--------cHHHHHHHHHHc------------CccccccCCceeEEEeeccCCCChh
Q psy4665 208 IRMAREAKVPIIVAINKIDKPAA--------DIERTKNMLLAQ------------GITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 208 l~~~~~~~iP~IvviNK~Dl~~~--------~~~~~~~~l~~~------------~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
...+.+.++|+|++.||+|+.+. +.+.+.+.+.+. .+.+++|......+.+|+.+|.|.+
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 55666789999999999999765 344455444431 2234566667889999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q psy4665 268 NLTEAIERTKNMLLA 282 (673)
Q Consensus 268 ~l~~~i~~~~~~~~~ 282 (673)
+++.++.+..+.+..
T Consensus 254 df~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 254 DFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887754
No 296
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.21 E-value=1.6e-10 Score=125.28 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=63.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEe--------------------cC---CeEEEEEeCCC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTL--------------------KS---GEQVTFLDTPG 172 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~--------------------~~---~~~i~liDTpG 172 (673)
++|+|+|.||+|||||+|+|++..+....++++|+++....+.. .+ ..+++|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 57999999999999999999999887778888888776654432 11 24688999999
Q ss_pred CC----cchhhh---hhccccCCeEEEEEECC
Q psy4665 173 HA----AFSNMR---SRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 173 ~~----~f~~~~---~~~~~~aD~~vlVvda~ 197 (673)
.. .+..+. ...++.||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 233332 23478999999999997
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.20 E-value=4.7e-11 Score=104.22 Aligned_cols=137 Identities=24% Similarity=0.295 Sum_probs=98.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCC----CcchhhhhhccccCCeEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----AAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----~~f~~~~~~~~~~aD~~v 191 (673)
.+++++|.+++|||||.++|.+...... -|+ .+++++. ..+||||- ..+-......+..+|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQ-----Ave~~d~---~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQ-----AVEFNDK---GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----ccc-----eeeccCc---cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 3689999999999999999988764321 122 2334222 26899993 222222233557899999
Q ss_pred EEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC-CCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 192 LVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP-AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~-~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
+|-.++++.+.-. -..+.-...|+|-+++|.|++ +++....++++.+.|- -+++.+|+.+..|+++|+
T Consensus 70 ~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa--------~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA--------EPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCC---cccccccccceEEEEecccccchHhHHHHHHHHHHcCC--------cceEEEeccCcccHHHHH
Confidence 9999998533211 122233466899999999998 6788888899988763 479999999999999999
Q ss_pred HHHHH
Q psy4665 271 EAIER 275 (673)
Q Consensus 271 ~~i~~ 275 (673)
+.+..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 98864
No 298
>KOG3883|consensus
Probab=99.17 E-value=9.7e-10 Score=99.11 Aligned_cols=158 Identities=21% Similarity=0.220 Sum_probs=114.5
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccccc-ccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhh-hhccccC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMR-SRGAHCT 187 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~-~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~-~~~~~~a 187 (673)
+-+..+|+++|.-++|||++++.|+.++..... ...+-.++....++.+.|. .+.|.||.|........ ..++..+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 456778999999999999999999887654433 2233345666666665543 68899999988884444 4567899
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHH-----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMARE-----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
|+.+||+|..+....|-.+.++.--. ..+|++++.||+|+.+. +.+....+.... .+...+++
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE---------kvkl~eVt 156 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKRE---------KVKLWEVT 156 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhh---------heeEEEEE
Confidence 99999999999877777776654322 35799999999999532 333333333332 35678999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~ 278 (673)
|.....+-+.|..+.....
T Consensus 157 a~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 157 AMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred eccchhhhhHHHHHHHhcc
Confidence 9999999888888766543
No 299
>KOG0072|consensus
Probab=99.17 E-value=6.3e-11 Score=105.66 Aligned_cols=156 Identities=26% Similarity=0.208 Sum_probs=110.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
+..++.++|-.|+||||++.++--.++... .| |...+...+.+ ++-++.+||..|+-..+..|..++...|.+|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kP--tigfnve~v~y-KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KP--TIGFNVETVPY-KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CC--CCCcCcccccc-ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 456799999999999999998866654432 22 33344555666 677899999999999999999999999999999
Q ss_pred EECCCCC--hHhhHHHHHHHHH---cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGV--MEQTVESIRMARE---AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~--~~q~~~~l~~~~~---~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
||+++.. .....+...++.+ .+..++++.||+|...+- ..++...+.-..+. ..-+.++..||.+|+|++
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk----~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLK----DRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHh----hheeEEEeeccccccCCc
Confidence 9999833 2233344444433 345689999999987642 22222222111110 113689999999999999
Q ss_pred hHHHHHHHHH
Q psy4665 268 NLTEAIERTK 277 (673)
Q Consensus 268 ~l~~~i~~~~ 277 (673)
...+|+.+..
T Consensus 169 ~~~DWL~~~l 178 (182)
T KOG0072|consen 169 PAMDWLQRPL 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=99.15 E-value=6.1e-10 Score=119.45 Aligned_cols=85 Identities=21% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC----------------eEEEEEeCCCCCc-
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG----------------EQVTFLDTPGHAA- 175 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~----------------~~i~liDTpG~~~- 175 (673)
.+...|+|+|.||+|||||+|+|++......+.|++|.++....+.+++. .++.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45578999999999999999999998888888999999888877776432 2589999999532
Q ss_pred ------chhhhhhccccCCeEEEEEECC
Q psy4665 176 ------FSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 176 ------f~~~~~~~~~~aD~~vlVvda~ 197 (673)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112234568899999999984
No 301
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.12 E-value=8.1e-10 Score=110.67 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=97.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-----hhhccccCCeE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM-----RSRGAHCTDIV 190 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~-----~~~~~~~aD~~ 190 (673)
+|.+||+.++||||+.+.+.... +.....-+.|.++....+...+...+++||+||+..|... +..-++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 58999999999999999998775 3344455778888777777656779999999999877654 34456899999
Q ss_pred EEEEECCCCChHhhH----HHHHHHHH--cCCCEEEEEecCCCCCCcHHH-HHHHHH-HcCccccccC-CceeEEEeecc
Q psy4665 191 VLVVAADDGVMEQTV----ESIRMARE--AKVPIIVAINKIDKPAADIER-TKNMLL-AQGITVEDLG-GDIQAVPISAL 261 (673)
Q Consensus 191 vlVvda~~g~~~q~~----~~l~~~~~--~~iP~IvviNK~Dl~~~~~~~-~~~~l~-~~~~~~~~~~-~~~~~v~iSA~ 261 (673)
|+|+|+.+....... ..+..+.. .++.+.+++.|+|+...+... ..+... .....+...+ ..+.++.+|-.
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 999999943333332 23333333 366799999999996533221 111111 1111111121 14788889988
Q ss_pred CCCChhhHHHHHHHHHHHHHh
Q psy4665 262 TGTNVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~~~~ 282 (673)
+. -++++.......+++
T Consensus 161 D~----Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 161 DE----SLYEAWSKIVQKLIP 177 (232)
T ss_dssp ST----HHHHHHHHHHHTTST
T ss_pred Cc----HHHHHHHHHHHHHcc
Confidence 73 456666666666554
No 302
>KOG0096|consensus
Probab=99.12 E-value=2.3e-10 Score=107.15 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
-.++++++|..+.||||++++.+.+++.....+++........+..+.| .++..|||.|++.|...+..++-.+.++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3578999999999999999999999988777766665555444444344 588899999999999999988888899999
Q ss_pred EEECCCCChHhhHHHHH-HHH--HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 193 VVAADDGVMEQTVESIR-MAR--EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~-~~~--~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
++|......-+...-|. .+. ..++|+++++||.|...... +...+.+ ....++.++++||+++.|.+.-
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~-------k~k~v~~-~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKV-------KAKPVSF-HRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccccc-------cccccee-eecccceeEEeecccccccccc
Confidence 99999876655543332 221 13699999999999754220 1111111 1123678999999999999999
Q ss_pred HHHHHHHH
Q psy4665 270 TEAIERTK 277 (673)
Q Consensus 270 ~~~i~~~~ 277 (673)
|.|+.+..
T Consensus 161 Fl~LarKl 168 (216)
T KOG0096|consen 161 FLWLARKL 168 (216)
T ss_pred hHHHhhhh
Confidence 99987653
No 303
>KOG0077|consensus
Probab=99.12 E-value=2.6e-10 Score=104.49 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=108.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
++.-++.++|--|+|||||++.|...+...- -.|.+++...+.+ .|-+++-+|..||..-+..+..++..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh---vPTlHPTSE~l~I-g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHPTSEELSI-GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccccc---CCCcCCChHHhee-cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 3556799999999999999999987764322 2366666666777 67899999999999988888899999999999
Q ss_pred EEECCCCC-hHhhHHHHHHHH----HcCCCEEEEEecCCCCCCcHHHHHHHHH---Hc----C-cccccc-CCceeEEEe
Q psy4665 193 VVAADDGV-MEQTVESIRMAR----EAKVPIIVAINKIDKPAADIERTKNMLL---AQ----G-ITVEDL-GGDIQAVPI 258 (673)
Q Consensus 193 Vvda~~g~-~~q~~~~l~~~~----~~~iP~IvviNK~Dl~~~~~~~~~~~l~---~~----~-~~~~~~-~~~~~~v~i 258 (673)
.+|+.+.. ....++.++.+. -..+|+++.+||+|.+.+..++...... +. + ...... .....++.+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99998832 223344443332 2589999999999998865332222111 11 1 011111 123456777
Q ss_pred eccCCCChhhHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIE 274 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~ 274 (673)
|...+.+..+.+.|+.
T Consensus 174 si~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEccCccceeeeehh
Confidence 8777777666555553
No 304
>PRK13768 GTPase; Provisional
Probab=99.12 E-value=3.1e-10 Score=116.25 Aligned_cols=113 Identities=24% Similarity=0.329 Sum_probs=74.4
Q ss_pred EEEEEeCCCCCcchh---hhh---hcccc--CCeEEEEEECCCCChHhhHHHHHHHH-----HcCCCEEEEEecCCCCCC
Q psy4665 164 QVTFLDTPGHAAFSN---MRS---RGAHC--TDIVVLVVAADDGVMEQTVESIRMAR-----EAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 164 ~i~liDTpG~~~f~~---~~~---~~~~~--aD~~vlVvda~~g~~~q~~~~l~~~~-----~~~iP~IvviNK~Dl~~~ 230 (673)
.+.++||||+.++.. ... +.+.. ++++++|+|+..+..+.+......+. ..++|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 589999999765432 221 22222 89999999998876666554443332 578999999999999754
Q ss_pred c-HHHHHHHHHH-------cC--------------ccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 231 D-IERTKNMLLA-------QG--------------ITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 231 ~-~~~~~~~l~~-------~~--------------~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
+ .++....+.. .. ..++..+...+++++|++++.|++++.+++.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 3 2222222221 00 011223334688999999999999999998765
No 305
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=1.4e-09 Score=110.73 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh---h-------hh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN---M-------RS 181 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~---~-------~~ 181 (673)
..+.+|+++|.+|+|||||+|+|++.... .+...+.|.........+ ++.++++|||||..+... . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 45689999999999999999999997643 333445566665555555 678999999999876521 1 11
Q ss_pred hcc--ccCCeEEEEEECCC-CChHhhHHHHHHHHH-cC----CCEEEEEecCCCC
Q psy4665 182 RGA--HCTDIVVLVVAADD-GVMEQTVESIRMARE-AK----VPIIVAINKIDKP 228 (673)
Q Consensus 182 ~~~--~~aD~~vlVvda~~-g~~~q~~~~l~~~~~-~~----iP~IvviNK~Dl~ 228 (673)
+++ ...|++++|...+. .........++.+.. ++ .++++|+||+|..
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 222 25788888876654 334444556655554 33 4699999999984
No 306
>KOG2486|consensus
Probab=99.10 E-value=2.8e-10 Score=113.05 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=112.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccc---cccccceeeeEEEEEEEecCCeEEEEEeCCCC----------Ccchh
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVV---KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AAFSN 178 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~---~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----------~~f~~ 178 (673)
..++|.+++.|.+|+|||||+|.+...... ....+|-|+.+..+.+ +.++.++|.||. +++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v----~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV----GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec----cceEEEEecCCcccccCCccCcchHhH
Confidence 456799999999999999999999876421 2225677887766554 568999999992 33444
Q ss_pred hhhhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH---HHHHHHHHH--cCccccccC
Q psy4665 179 MRSRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI---ERTKNMLLA--QGITVEDLG 250 (673)
Q Consensus 179 ~~~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~---~~~~~~l~~--~~~~~~~~~ 250 (673)
+...++ ..---+++++|++.++.+.+...+.++.+.++|+.+|+||||+...-. .+....... .++...-+.
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 444333 233456888999999999999999999999999999999999842110 000000000 011111122
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
...|++.+|+.++.|++.|.-.+.+..
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccCCceeeecccccCceeeeeehhhhh
Confidence 356788899999999999876665543
No 307
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.09 E-value=6.8e-10 Score=116.99 Aligned_cols=116 Identities=23% Similarity=0.260 Sum_probs=73.6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLL 240 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~ 240 (673)
|..+.|+||+|...-... ....||.+++|++...|..-|.... ....+.-++|+||+|+.+.. .......+.
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~~~a~~~~~el~ 220 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNKTAARRAAAEYR 220 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccchhHHHHHHHHHH
Confidence 567999999997522211 3567999999987555544444321 11223348999999987533 223333333
Q ss_pred HcCcccc--ccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCC
Q psy4665 241 AQGITVE--DLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQG 284 (673)
Q Consensus 241 ~~~~~~~--~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~ 284 (673)
..-.... ...+..+++++||+++.|+++|++.+.+....+.+.+
T Consensus 221 ~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg 266 (332)
T PRK09435 221 SALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG 266 (332)
T ss_pred HHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence 2211111 1123468999999999999999999999887555433
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.08 E-value=2.1e-09 Score=108.37 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccccccee-------------------------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT------------------------------------------- 149 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T------------------------------------------- 149 (673)
...|.++++|+.++|||||+++|.+..+.....+.+|
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999987542111111111
Q ss_pred --------eeEEEEEEEecCCeEEEEEeCCCCCcc-------------hhhhhhccc-cCCeEEEEEECCCCChHhh-HH
Q psy4665 150 --------QHIGAFVVTLKSGEQVTFLDTPGHAAF-------------SNMRSRGAH-CTDIVVLVVAADDGVMEQT-VE 206 (673)
Q Consensus 150 --------~~~~~~~v~~~~~~~i~liDTpG~~~f-------------~~~~~~~~~-~aD~~vlVvda~~g~~~q~-~~ 206 (673)
.+.-...+..++...++|+||||.... ..+...++. ..+++++|+|+..+...+. .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 111111222223346999999997422 122334555 4569999999998887776 58
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc
Q psy4665 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ 242 (673)
Q Consensus 207 ~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~ 242 (673)
..+.+...+.|+++|+||+|..+...+ +...+...
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~~~~~~-~~~~~~~~ 218 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLMDEGTD-ARDILENK 218 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCCCccHH-HHHHHhCC
Confidence 888888889999999999999764433 45555443
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.05 E-value=3.2e-10 Score=114.79 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCcchhhhhhcc--------ccCCeEEEEEECCCCChHhh-----HHHHHHHHHcCCCEEEEEecCCCCCC
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGA--------HCTDIVVLVVAADDGVMEQT-----VESIRMAREAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~--------~~aD~~vlVvda~~g~~~q~-----~~~l~~~~~~~iP~IvviNK~Dl~~~ 230 (673)
.+.++|||||.++...+.... ...=++++++|+..-..+.. ...+....+.+.|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 489999999977765554222 34557899999986433322 22223344579999999999999763
Q ss_pred cHHHHHHHH------------------HHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 231 DIERTKNML------------------LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 231 ~~~~~~~~l------------------~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
..+...+.. .+....++.++....++++|+.+++++++|+..+.++.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 221111111 11122234455444899999999999999999988764
No 310
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.99 E-value=7.6e-09 Score=107.02 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=74.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh---hcc----
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS---RGA---- 184 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~---~~~---- 184 (673)
...++|+++|.+|+|||||+|+|++.... .+...+.|.......... +|.++++|||||..+...... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 45788999999999999999999987643 222223333332223333 688999999999876432211 111
Q ss_pred --ccCCeEEEEEECCC-CChHhhHHHHHHHHHc-----CCCEEEEEecCCCC
Q psy4665 185 --HCTDIVVLVVAADD-GVMEQTVESIRMAREA-----KVPIIVAINKIDKP 228 (673)
Q Consensus 185 --~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~-----~iP~IvviNK~Dl~ 228 (673)
...|++++|...+. .....+...++.+... -.++|+++|+.|..
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 25899999965543 3333444455544432 24799999999975
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.98 E-value=5.2e-09 Score=110.38 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=92.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC----ccc------------cccccc---eeeeEEE---EEEEecCC----eEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT----SVV------------KSEFGG---ITQHIGA---FVVTLKSG----EQVT 166 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~----~~~------------~~~~~g---~T~~~~~---~~v~~~~~----~~i~ 166 (673)
.....|+++|+.++|||||+|+|... ... ++..+| +|.++.. ..+++.-. .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34578999999999999999999876 322 334467 6666554 33333222 5799
Q ss_pred EEeCCCCCcch--------h-----------------h----hhhccc-cCCeEEEEE-ECC------CCChHhhHHHHH
Q psy4665 167 FLDTPGHAAFS--------N-----------------M----RSRGAH-CTDIVVLVV-AAD------DGVMEQTVESIR 209 (673)
Q Consensus 167 liDTpG~~~f~--------~-----------------~----~~~~~~-~aD~~vlVv-da~------~g~~~q~~~~l~ 209 (673)
|+||+|+.+-. . . ....+. .+|+.++|. |++ +...+...+.+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999953211 1 0 112344 789999998 876 445566778889
Q ss_pred HHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 210 MAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 210 ~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
.+++.++|+++++||+|-.........+.+.+. + .++++++|+.
T Consensus 175 eLk~~~kPfiivlN~~dp~~~et~~l~~~l~ek------y--~vpvl~v~c~ 218 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPYHPETEALRQELEEK------Y--DVPVLAMDVE 218 (492)
T ss_pred HHHhcCCCEEEEEECcCCCCchhHHHHHHHHHH------h--CCceEEEEHH
Confidence 999999999999999994322222223333221 1 3567777764
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=3.4e-09 Score=105.47 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=89.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcc-------ccccccceeee------EEEEEEEec------------------
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSV-------VKSEFGGITQH------IGAFVVTLK------------------ 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~-------~~~~~~g~T~~------~~~~~v~~~------------------ 160 (673)
...+++|+++|+.|+|||||+++++.... ...+. +.+.+ .+...+.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 34689999999999999999999965310 00000 00000 000001111
Q ss_pred ---CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc---HHH
Q psy4665 161 ---SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD---IER 234 (673)
Q Consensus 161 ---~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~---~~~ 234 (673)
.+..+.|++|.|.-.... ......+..+.|+|+.++..... +.....+.|.++++||+|+.+.. ..+
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHH
Confidence 123577888888211111 11123455677888876543322 22233467899999999997532 233
Q ss_pred HHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 235 TKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
..+.+++. ....+++++||++|.|++++++++.+.
T Consensus 171 ~~~~l~~~-------~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 171 MKADAKKI-------NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHh-------CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44444332 124689999999999999999998764
No 313
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.97 E-value=2.7e-09 Score=102.16 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=45.7
Q ss_pred EEEEEeCCCCCcc----hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHH-cCCCEEEEEecC
Q psy4665 164 QVTFLDTPGHAAF----SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE-AKVPIIVAINKI 225 (673)
Q Consensus 164 ~i~liDTpG~~~f----~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~-~~iP~IvviNK~ 225 (673)
.+.|+||||..+. ..+...++..+|++++|++++.....+..+.+..... ....+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4899999997432 2445567799999999999999777666666655554 444589999985
No 314
>KOG1707|consensus
Probab=98.96 E-value=5.4e-10 Score=121.00 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=109.2
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCcccccc---ccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccC
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCT 187 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~---~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~a 187 (673)
...+..+|+++|..|+|||||+-+|+...+...- .+.+++-. .+. ++.....++||+...+-.......++.|
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa---dvt-Pe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA---DVT-PENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC---ccC-cCcCceEEEecccccchhHHHHHHHhhc
Confidence 3456778999999999999999999998865432 23344331 121 2455689999997666555556689999
Q ss_pred CeEEEEEECCC-----CChHhhHHHHHHHHH--cCCCEEEEEecCCCCCCcHH----HHHHHHHHcCccccccCCceeEE
Q psy4665 188 DIVVLVVAADD-----GVMEQTVESIRMARE--AKVPIIVAINKIDKPAADIE----RTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 188 D~~vlVvda~~-----g~~~q~~~~l~~~~~--~~iP~IvviNK~Dl~~~~~~----~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
|++.+|++.++ +++..|+.++++... .++|+|+|+||+|....... .+...+.+.. .--.+|
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~-------EiEtci 153 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA-------EIETCI 153 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH-------HHHHHH
Confidence 99999998887 344444454444431 46899999999999654322 1222222211 112578
Q ss_pred EeeccCCCChhhHHHHHHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
++||++-.++.++|.....+.-.+
T Consensus 154 ecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhhhHhhhhhhhheeecc
Confidence 999999999999998887765433
No 315
>KOG1673|consensus
Probab=98.93 E-value=6e-09 Score=94.29 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=113.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|.+..|||||+-...+......+............+.. .+. .+.+||..|+++|..+..-+...+-++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 467999999999999999999998876555444445555556665 344 56689999999999999988889999999
Q ss_pred EEECCCCChHhh-HHHHHHHHHcCCC--EEEEEecCCCC----CCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMAREAKVP--IIVAINKIDKP----AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~~~iP--~IvviNK~Dl~----~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
++|.+...+-.. .++.++++..+.. -|++++|-|+. ....+.+..+.+.+...+ +.+.+++|+....|
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m-----nAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVM-----NASLFFCSTSHSIN 173 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHh-----CCcEEEeecccccc
Confidence 999998665544 4566777776542 47789999972 122223333333332222 56899999999999
Q ss_pred hhhHHHHHHH
Q psy4665 266 VDNLTEAIER 275 (673)
Q Consensus 266 v~~l~~~i~~ 275 (673)
++++|..+..
T Consensus 174 v~KIFK~vlA 183 (205)
T KOG1673|consen 174 VQKIFKIVLA 183 (205)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.92 E-value=1.6e-08 Score=106.34 Aligned_cols=112 Identities=26% Similarity=0.247 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH-HHHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER-TKNMLL 240 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~-~~~~l~ 240 (673)
+..+.|+||||...-. ...+..+|.++++.+...+..-+. ... .-.++|.++++||+|+.+..... ....+.
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~-~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~ 198 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKA-GLMEIADIYVVNKADGEGATNVTIARLMLA 198 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHH-HHhhhccEEEEEcccccchhHHHHHHHHHH
Confidence 5679999999964211 124567888888865554322211 111 12478899999999997653221 111111
Q ss_pred Hc-Cccccc-cCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 241 AQ-GITVED-LGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 241 ~~-~~~~~~-~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.. ...... ..+..+++++||+++.|++++++++.+....+
T Consensus 199 ~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 199 LALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred HHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 00 000111 11234689999999999999999998875544
No 317
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.89 E-value=7.7e-09 Score=87.38 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=63.6
Q ss_pred CCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC-cceEEEEec------ccccceeccCccccccCcEEEeee
Q psy4665 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ-AWAKVRSIS------RKTLINTALGTVQRTSGTVKISLG 400 (673)
Q Consensus 328 ~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~-~~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~g 400 (673)
++|+.++||++..+++.|+++++||++|+|++|+.+++.. ...++..++ ..++++|.|||+ ++ +.|
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~a-i~g 73 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDI------AI-LTG 73 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCE------EE-EEC
Confidence 3689999999999999999999999999999999997543 223444544 567899999999 88 899
Q ss_pred CCCCCCCCCCCeEe
Q psy4665 401 FKINPFCPSGDVDG 414 (673)
Q Consensus 401 l~~~~~~~~Gd~l~ 414 (673)
++++. .||+|+
T Consensus 74 l~~~~---~Gdtl~ 84 (85)
T cd03690 74 LKGLR---VGDVLG 84 (85)
T ss_pred CCCCc---CccccC
Confidence 88755 599985
No 318
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.87 E-value=1.6e-08 Score=100.97 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=73.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCcccccc--ccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhh----c
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSR----G 183 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~--~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~----~ 183 (673)
+|.++|.+|+||||+.|.|++....... ....|.........+ +|..++++||||.-+-. ....+ .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 6899999999999999999998754332 234566666666666 78999999999963321 11111 2
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHH-cCC----CEEEEEecCCCCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMARE-AKV----PIIVAINKIDKPA 229 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~-~~i----P~IvviNK~Dl~~ 229 (673)
....++++||+... .........++.+.. ++- -++|++|.+|...
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 35689999999998 677777777766654 232 3888899888754
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.85 E-value=5e-09 Score=107.77 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=64.2
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe----------------EEEEEeCCCCCc------
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE----------------QVTFLDTPGHAA------ 175 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~----------------~i~liDTpG~~~------ 175 (673)
|+|+|.||+|||||+|+|++........+++|+++....+.+++.+ ++.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999888888999998888777774432 589999999532
Q ss_pred -chhhhhhccccCCeEEEEEECCC
Q psy4665 176 -FSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 176 -f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
........++.+|++++|+|+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 11122234678999999999864
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.2e-08 Score=103.51 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=67.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC----------C-------eEEEEEeCCCCC---
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS----------G-------EQVTFLDTPGHA--- 174 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~----------~-------~~i~liDTpG~~--- 174 (673)
...++|+|.||+|||||.|+++.......++|++|++++...+..++ + ..+.|+|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 35799999999999999999999998889999999999888776642 1 147899999952
Q ss_pred ----cchhhhhhccccCCeEEEEEECCC
Q psy4665 175 ----AFSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 175 ----~f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
-..+.....++.+|++++|||+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 233333446688999999999984
No 321
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.83 E-value=1.7e-08 Score=84.92 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeCC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFK 402 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~ 402 (673)
+.++||+++.+++.|+++++||++|+|++||.+.+.... .++..++ ..++++|.|||+ +. +.|++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~ 73 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNI------GV-ITGLK 73 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCE------EE-EECCC
Confidence 368999999999999999999999999999999754432 3444443 568999999999 88 88987
Q ss_pred CCCCCCCCCeEee
Q psy4665 403 INPFCPSGDVDGS 415 (673)
Q Consensus 403 ~~~~~~~Gd~l~~ 415 (673)
+.. .||+++.
T Consensus 74 ~~~---~Gdtl~~ 83 (83)
T cd04092 74 QTR---TGDTLVT 83 (83)
T ss_pred Ccc---cCCEEeC
Confidence 754 6999973
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.82 E-value=4.5e-08 Score=99.01 Aligned_cols=167 Identities=25% Similarity=0.296 Sum_probs=106.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcC------cc-----ccccc-------------cceeeeEEEEEEEec-------
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNT------SV-----VKSEF-------------GGITQHIGAFVVTLK------- 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~------~~-----~~~~~-------------~g~T~~~~~~~v~~~------- 160 (673)
..++.+|+|-|.||+|||||+++|... ++ .++.. ..++.+.+.+.-..+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 346789999999999999999998431 11 01110 112222222222221
Q ss_pred --------------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCC
Q psy4665 161 --------------SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID 226 (673)
Q Consensus 161 --------------~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~D 226 (673)
-|+.+.|+.|.|.-.-... -...+|.+++|.-+.-|...|..+. --..+.=|+|+||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccC
Confidence 2445888888885322211 2366899999988887877776542 112345599999999
Q ss_pred CCCCcH--HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCC
Q psy4665 227 KPAADI--ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGI 285 (673)
Q Consensus 227 l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~ 285 (673)
+.+++. .++...+..........++..+++.+||.+|+|+++|++.+.+..+.+-+.|+
T Consensus 201 ~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~ 261 (323)
T COG1703 201 RKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGL 261 (323)
T ss_pred hhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccc
Confidence 866532 22222222222223445678899999999999999999999999887766553
No 323
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.81 E-value=1.8e-08 Score=84.99 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=60.2
Q ss_pred EEEEEEEe---ecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeC
Q psy4665 333 AMIVESKF---DTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGF 401 (673)
Q Consensus 333 ~~V~e~~~---~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl 401 (673)
++||++.. +++.|+++++||++|+|++||.+++.... .++..|+ ..++++|.|||+ +. +.|+
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdI------v~-v~gl 73 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDI------IG-LVNP 73 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCE------EE-EECC
Confidence 47999999 99999999999999999999999765533 3444544 567899999999 88 8998
Q ss_pred CCCCCCCCCCeEee
Q psy4665 402 KINPFCPSGDVDGS 415 (673)
Q Consensus 402 ~~~~~~~~Gd~l~~ 415 (673)
+++. .||+|++
T Consensus 74 ~~~~---~Gdtl~~ 84 (85)
T cd03689 74 GNFQ---IGDTLTE 84 (85)
T ss_pred CCcc---ccCEeeC
Confidence 7755 5999984
No 324
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.81 E-value=1.3e-08 Score=108.11 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=65.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC----------------eEEEEEeCCCCCcc---
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG----------------EQVTFLDTPGHAAF--- 176 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~----------------~~i~liDTpG~~~f--- 176 (673)
++|+|+|.||+|||||+|+|++......+.|++|+++....+.+++. .++.|+||||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999888888899999888777766442 25899999996321
Q ss_pred ----hhhhhhccccCCeEEEEEECC
Q psy4665 177 ----SNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 177 ----~~~~~~~~~~aD~~vlVvda~ 197 (673)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112223568899999999995
No 325
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.79 E-value=2.5e-08 Score=106.00 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=84.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccccc-----ccceeeeEEEEEEEecCCeEEEEEeCCCCC--cchhh---hh
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-----FGGITQHIGAFVVTLKSGEQVTFLDTPGHA--AFSNM---RS 181 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~-----~~g~T~~~~~~~v~~~~~~~i~liDTpG~~--~f~~~---~~ 181 (673)
...+.+|+|+|.+|+|||||+|+|++-...... .-.+|.....+. .++-..++|||.||.. .|... -.
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 345679999999999999999999873221111 112344444333 3344479999999952 33322 12
Q ss_pred hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC----------CCcHHHHHHHHHHcCc-cccccC
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP----------AADIERTKNMLLAQGI-TVEDLG 250 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~----------~~~~~~~~~~l~~~~~-~~~~~~ 250 (673)
-.+...|.+|++.+ ..........++.+...++|+.+|-+|+|.. ..+.+++.+.+++.-. .+...+
T Consensus 110 ~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 110 VKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp TTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred ccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 24677897766544 3456777888899999999999999999961 1133334444333211 111112
Q ss_pred -CceeEEEeeccCCC--ChhhHHHHHH
Q psy4665 251 -GDIQAVPISALTGT--NVDNLTEAIE 274 (673)
Q Consensus 251 -~~~~~v~iSA~~g~--gv~~l~~~i~ 274 (673)
...+++-+|...-. ....|.+.+.
T Consensus 188 v~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 188 VSEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp -SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred CCcCceEEEeCCCcccCChHHHHHHHH
Confidence 34678889987643 3445555554
No 326
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=98.79 E-value=5.9e-08 Score=84.50 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcce----EEEEec---c----------cccceeccCccccccCc
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWA----KVRSIS---R----------KTLINTALGTVQRTSGT 394 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~----kvr~i~---~----------~~v~~a~~G~~~~~~g~ 394 (673)
.|.|+|+..+++.|+++++++++|+|+.||++++|..++ +||.|. + .+++++.|+..
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~g------ 75 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAG------ 75 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCC------
Confidence 588999999999999999999999999999999888775 999988 3 36788886666
Q ss_pred EEE-eeeCCCCCCCCCCCeEeecCChhhHH
Q psy4665 395 VKI-SLGFKINPFCPSGDVDGSVEALLDVF 423 (673)
Q Consensus 395 v~~-i~gl~~~~~~~~Gd~l~~~~~~~~~~ 423 (673)
+.+ +.||++. . +|+.|...++++++.
T Consensus 76 vkI~~~gL~~v-~--aG~~~~vv~~e~~a~ 102 (110)
T cd03703 76 VKILAPDLEKA-I--AGSPLLVVGPEDEIE 102 (110)
T ss_pred cEEEeCCCccc-c--CCCEEEEECCHHHHH
Confidence 552 4578776 4 899999999877765
No 327
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.79 E-value=5.7e-08 Score=95.87 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC---CcHHHHHHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA---ADIERTKNML 239 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~---~~~~~~~~~l 239 (673)
....+++|.|..- ..... ...+|.++.|+|+.++...+.. ........-++++||+|+.+ .+.+.+.+.+
T Consensus 92 ~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~ 164 (199)
T TIGR00101 92 LEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMVGADLGVMERDA 164 (199)
T ss_pred CCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccccccHHHHHHHH
Confidence 3577889988311 10001 1236889999999986553221 11122233489999999974 3455555555
Q ss_pred HHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
+... ...+++++||++|+|++++++++.+.
T Consensus 165 ~~~~-------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 165 KKMR-------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHhC-------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5542 25789999999999999999998754
No 328
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.79 E-value=8.2e-09 Score=103.13 Aligned_cols=162 Identities=29% Similarity=0.362 Sum_probs=92.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------cc-----ccccc--c-----------ceeeeEEEEEEEec--------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SV-----VKSEF--G-----------GITQHIGAFVVTLK-------- 160 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~-----~~~~~--~-----------g~T~~~~~~~v~~~-------- 160 (673)
.+.++|+|-|+||+|||||+++|... ++ .++.. + ..+.+.+.+.-...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35679999999999999999998432 11 01100 0 01111111111111
Q ss_pred -------------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 161 -------------SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 161 -------------~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
-|+.+.|+.|.|.-.-... -...+|.+++|+.+..|..-|..+.= -..++=|+|+||.|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaG----imEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAG----IMEIADIFVVNKADR 179 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TT----HHHH-SEEEEE--SH
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhh----hhhhccEEEEeCCCh
Confidence 2456889999885322211 34679999999999887776664310 012345999999997
Q ss_pred CCCcH--HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhC
Q psy4665 228 PAADI--ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQ 283 (673)
Q Consensus 228 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~ 283 (673)
+.++. .++...+.-... ..-.+.+|++.+||.++.|+++|.+.+.+....+.+.
T Consensus 180 ~gA~~~~~~l~~~l~l~~~--~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 180 PGADRTVRDLRSMLHLLRE--REDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp HHHHHHHHHHHHHHHHCST--SCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccc--cccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 65432 122222221111 1223467999999999999999999999988777643
No 329
>KOG1486|consensus
Probab=98.78 E-value=1e-07 Score=93.23 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=71.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhcc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGA 184 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~ 184 (673)
....-+|+++|.|.+|||||+..++.+......+.++|.......+.+ +|..++++|.||.-.-. ......+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEEEe
Confidence 445678999999999999999999998877777889999888888888 78999999999963221 1222356
Q ss_pred ccCCeEEEEEECCCC
Q psy4665 185 HCTDIVVLVVAADDG 199 (673)
Q Consensus 185 ~~aD~~vlVvda~~g 199 (673)
+.||++++|.||+.+
T Consensus 138 rtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 138 RTADLILMVLDATKS 152 (364)
T ss_pred ecccEEEEEecCCcc
Confidence 889999999999863
No 330
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.77 E-value=4.5e-08 Score=82.94 Aligned_cols=78 Identities=28% Similarity=0.263 Sum_probs=61.1
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec-----ccccceeccCccccccCcEEEeeeCCC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS-----RKTLINTALGTVQRTSGTVKISLGFKI 403 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~-----~~~v~~a~~G~~~~~~g~v~~i~gl~~ 403 (673)
+.++||++.++++.|+++++||++|+|++|+.+++.... .++..++ ..+++++.|||+ +.+..++..
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI------~~v~~g~~~ 74 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQV------GYIIAGIKT 74 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCE------EEEEccccc
Confidence 468999999999999999999999999999999754332 3444444 568899999999 773346555
Q ss_pred CCCCCCCCeEe
Q psy4665 404 NPFCPSGDVDG 414 (673)
Q Consensus 404 ~~~~~~Gd~l~ 414 (673)
+..+..|||++
T Consensus 75 l~~~~~Gdtl~ 85 (86)
T cd03699 75 VKDARVGDTIT 85 (86)
T ss_pred cCccccccEee
Confidence 55556799996
No 331
>KOG4423|consensus
Probab=98.74 E-value=1.8e-09 Score=100.68 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
...++.++|.-++||||++.+.+...+...+...+..+.....+.|++.. ++.|||..|++.|..|..-+++.+.+++
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 45679999999999999999998887776666666666655556663322 5779999999999999988999999999
Q ss_pred EEEECCCCChHhhHHHHHHHHH------cC--CCEEEEEecCCCCCCcH----HHHHHHHHHcCccccccCCceeEEEee
Q psy4665 192 LVVAADDGVMEQTVESIRMARE------AK--VPIIVAINKIDKPAADI----ERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 192 lVvda~~g~~~q~~~~l~~~~~------~~--iP~IvviNK~Dl~~~~~----~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
+|+|.+..........|.+-.. .+ +|+++..||||...... ..+.+..++.+ ..-.+++|
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~keng--------f~gwtets 175 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENG--------FEGWTETS 175 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccC--------ccceeeec
Confidence 9999998665544433433221 23 46899999999854322 22222222322 34578999
Q ss_pred ccCCCChhhHHHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~~ 279 (673)
++.+.+++|..+.+.+....
T Consensus 176 ~Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKILV 195 (229)
T ss_pred cccccChhHHHHHHHHHHHh
Confidence 99999999998888776543
No 332
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.71 E-value=7.2e-08 Score=81.11 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=60.6
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeCC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFK 402 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~ 402 (673)
+.++||+++.+++.|+++++||++|+|++||.+.+.... .++..++ ..+++++.|||+ +. +.|++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~~-i~g~~ 73 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDI------GA-VAGLK 73 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCE------EE-EECCC
Confidence 368999999999999999999999999999999755432 3444543 467899999999 88 78987
Q ss_pred CCCCCCCCCeEe
Q psy4665 403 INPFCPSGDVDG 414 (673)
Q Consensus 403 ~~~~~~~Gd~l~ 414 (673)
++. .||+++
T Consensus 74 ~~~---~Gdtl~ 82 (83)
T cd04088 74 DTA---TGDTLC 82 (83)
T ss_pred CCc---cCCEee
Confidence 744 699986
No 333
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.71 E-value=7.3e-08 Score=81.67 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=59.8
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec------ccccceeccCccccccCcEEEee
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS------RKTLINTALGTVQRTSGTVKISL 399 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~ 399 (673)
+.++||+++.+++.|+++++||++|+|++||.+.+... ..+++.++ ..+++++.||++ +. +.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I------~~-i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDI------VA-IA 73 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCE------EE-EE
Confidence 46899999999999999999999999999999964322 23455553 467899999999 86 88
Q ss_pred eCCCCCCCCCCCeEe
Q psy4665 400 GFKINPFCPSGDVDG 414 (673)
Q Consensus 400 gl~~~~~~~~Gd~l~ 414 (673)
|++++. .||+++
T Consensus 74 gl~~~~---~Gdtl~ 85 (86)
T cd03691 74 GIEDIT---IGDTIC 85 (86)
T ss_pred CCCCCc---ccceec
Confidence 987654 699985
No 334
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.68 E-value=9.4e-08 Score=79.98 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=58.2
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec------ccccceeccCccccccCcEEEeeeCC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS------RKTLINTALGTVQRTSGTVKISLGFK 402 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~ 402 (673)
+.++||++.+++. |+++++||++|+|++||.+++.... .++..++ ..+++++.|||+ +. +.|++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI------~~-i~g~~ 72 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDI------CA-IFGID 72 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCE------EE-EECCC
Confidence 4689999999987 9999999999999999999765543 3344443 457899999999 88 88875
Q ss_pred CCCCCCCCCeEe
Q psy4665 403 INPFCPSGDVDG 414 (673)
Q Consensus 403 ~~~~~~~Gd~l~ 414 (673)
+ +.||||+
T Consensus 73 -~---~~Gdtl~ 80 (81)
T cd04091 73 -C---ASGDTFT 80 (81)
T ss_pred -c---ccCCEec
Confidence 3 3699986
No 335
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2e-07 Score=100.08 Aligned_cols=140 Identities=20% Similarity=0.307 Sum_probs=96.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc--c-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS--V-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTD 188 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~--~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD 188 (673)
.+.|..|++||+||+|||||+..|...- . ...-.+.+|.-. ...++++|+.+| .+...+.. -+..||
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp--~Dl~~miD-vaKIaD 135 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECP--SDLHQMID-VAKIAD 135 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeCh--HHHHHHHh-HHHhhh
Confidence 3456788899999999999999986532 1 122223344322 255789999999 45555544 678899
Q ss_pred eEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+++|++|+.-|..-.|.+.+..+...+.| ++-|++..|+... .....+..++.. ...+......++.+|...+
T Consensus 136 LVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhR--fWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 136 LVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHR--FWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhh--HHHHHcCCceEEEeccccc
Confidence 99999999999999999999999999999 6778999999642 122222222221 1112223456777776553
No 336
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.65 E-value=1.1e-07 Score=90.83 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=53.4
Q ss_pred eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC---CCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP---AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
.-|+|+|.+.|.....+-. -.-. ..=++|+||.|+. +++.+...+..++.. ++.+++++|+++|+|
T Consensus 120 ~~v~VidvteGe~~P~K~g---P~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~n-------p~~~ii~~n~ktg~G 188 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGG---PGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVN-------PEAPIIFTNLKTGEG 188 (202)
T ss_pred eEEEEEECCCCCCCcccCC---Ccee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhC-------CCCCEEEEeCCCCcC
Confidence 7789999998754321100 0000 0248999999994 456677766666543 367999999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++.+++...
T Consensus 189 ~~~~~~~i~~~ 199 (202)
T COG0378 189 LDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 337
>KOG3886|consensus
Probab=98.65 E-value=4.9e-08 Score=94.48 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=98.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh-----hhccccC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR-----SRGAHCT 187 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~-----~~~~~~a 187 (673)
..++|.+||.+|+|||||=..+..... .....+|.|+++...++.+-++--+++||+.|++.|.... ..-.+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 346899999999999999887765542 2344578888888888776555688899999998776443 3456889
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHH---cCC---CEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMARE---AKV---PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~---~~i---P~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++++|+|++....+.+....+.+.+ .+- .+++.+.|+|+...+..+..-..+......-.....+.++++|-.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998766665555444322 133 488999999997665444332222211100000113566777765
Q ss_pred C
Q psy4665 262 T 262 (673)
Q Consensus 262 ~ 262 (673)
+
T Consensus 163 D 163 (295)
T KOG3886|consen 163 D 163 (295)
T ss_pred h
Confidence 4
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.61 E-value=2.7e-07 Score=95.01 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=83.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc-----c--ccccccceeee--------EEEEEEEe-----------------
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-----V--VKSEFGGITQH--------IGAFVVTL----------------- 159 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~-----~--~~~~~~g~T~~--------~~~~~v~~----------------- 159 (673)
..+...|.|+|.+|+|||||++++++.- . ...+. ++..+ .....+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 3567899999999999999998886531 1 00100 00000 00000000
Q ss_pred --cCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC---cHHH
Q psy4665 160 --KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA---DIER 234 (673)
Q Consensus 160 --~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~---~~~~ 234 (673)
..+..+.|+++.|.-...... .+ ..+.-+.|++...|... .+++-..+..+-++++||+|+... +.+.
T Consensus 180 L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~~~dle~ 252 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYLNFDVEK 252 (290)
T ss_pred HhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCcccHHHHHH
Confidence 012236667776631000000 01 01233466677665321 112223346788999999999753 3344
Q ss_pred HHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 235 TKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
..+.++... ...+++++||++|+|+++|.+|+.+.
T Consensus 253 ~~~~lr~ln-------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 253 CIACAREVN-------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHhhC-------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 444444332 25789999999999999999999763
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.57 E-value=6.5e-08 Score=90.09 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=75.7
Q ss_pred HHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHHh--CCeeEEEc-cCCCcccCcC--CcccccCCCCCC--c
Q psy4665 37 DIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKS--GMKYMVIN-PTNSVADDSN--GKDVERRPPADP--S 109 (673)
Q Consensus 37 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~~--g~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~--~ 109 (673)
++...+++++.+++++|........+ ..+.+.+... ++++.++- |.|...+... ............ -
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~------~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP------PDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCC------HHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEE
Confidence 45556677777788888654443332 3555666655 77777665 8775432110 011111110000 0
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
.......+++++|.+|+|||||+|+|++... ..+..++.|.+... +.+. ..+.+|||||.
T Consensus 78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~i~DtpG~ 138 (141)
T cd01857 78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLT--PTITLCDCPGL 138 (141)
T ss_pred EecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeC--CCEEEEECCCc
Confidence 0012233899999999999999999998764 45556777776543 4442 25899999996
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.56 E-value=1.3e-06 Score=97.66 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcc-ccccc-cceeeeEEEEEEEecCCeEEEEEeCCCCCcch------hh----hhh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEF-GGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS------NM----RSR 182 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~-~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~------~~----~~~ 182 (673)
..+|+++|.+|+|||||+|.|++... ..... +++|. ........ ++..+.+|||||..+.. .. ..+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 46899999999999999999999763 33332 34443 33333334 67899999999976532 11 111
Q ss_pred cc--ccCCeEEEEEECCCC-ChHhhHHHHHHHHH-cC----CCEEEEEecCCCCC
Q psy4665 183 GA--HCTDIVVLVVAADDG-VMEQTVESIRMARE-AK----VPIIVAINKIDKPA 229 (673)
Q Consensus 183 ~~--~~aD~~vlVvda~~g-~~~q~~~~l~~~~~-~~----iP~IvviNK~Dl~~ 229 (673)
.+ ..+|++++|...+.. ........++.+.. ++ .-+||++|.+|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 22 247999988876532 22233344554433 22 24899999999853
No 341
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.55 E-value=5.3e-07 Score=77.19 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=69.3
Q ss_pred CCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCCC
Q psy4665 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKI 403 (673)
Q Consensus 328 ~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~ 403 (673)
+.|++..|.+++..++.|+++.++|.+|+++.||.+++.+. ..+|++|+ +.++++|.||+. |++ .|++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~------v~i--~l~~ 73 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDN------VGF--NVKN 73 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCE------EEE--EECC
Confidence 46899999999999999999999999999999999988774 57888887 888999999999 874 3333
Q ss_pred --CCCCCCCCeEeecCC
Q psy4665 404 --NPFCPSGDVDGSVEA 418 (673)
Q Consensus 404 --~~~~~~Gd~l~~~~~ 418 (673)
...+++||+|+..++
T Consensus 74 i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 74 VSKKDIKRGDVAGDSKN 90 (91)
T ss_pred CCHHHcCCcCEEccCCC
Confidence 234678999998755
No 342
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=9.5e-07 Score=83.63 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=81.1
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEE
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
..+..+....+|++++|+|++++...+..+....+...+.|+++++||+|+.... .... .... ... ...+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~-~~~~---~~~--~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE--VLEK-WKSI---KES--EGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH--HHHH-HHHH---HHh--CCCcEE
Confidence 3455556677999999999998777666666666666789999999999996421 1111 1111 011 125789
Q ss_pred EeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
++||+++.|++++++.+.+..... ....++ ..-...+.|...|+..+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~~----------~~~~~~-~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKID----------GKEGKV-GVVGYPNVGKSSIINALK 122 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhhc----------CCCcEE-EEECCCCCCHHHHHHHHh
Confidence 999999999999999987765320 011122 334566888888888775
No 343
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.47 E-value=7.3e-07 Score=76.36 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=69.7
Q ss_pred EEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CC
Q psy4665 570 EANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EF 648 (673)
Q Consensus 570 ~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~ 648 (673)
++.|..+|.++ ..+.++..+|..|.++.|.++++++.+. ..+|+||+.++++++++.+|+.|+|.|.+.+. ++
T Consensus 6 r~~V~~vf~~~---g~g~vv~G~v~~G~i~~gd~v~i~P~~~---~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 6 RLPIQDVYKIG---GIGTVPVGRVETGVLKPGMVVTFAPAGV---TGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred EEEEEEEEEeC---CceEEEEEEEecceeecCCEEEECCCCc---EEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 35688899875 2346777899999999999999999884 47999999999999999999999999998543 89
Q ss_pred CCCCEEEE
Q psy4665 649 EPGDTIVC 656 (673)
Q Consensus 649 ~~gD~i~~ 656 (673)
+.||+|-.
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 99999854
No 344
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.46 E-value=8.5e-07 Score=92.05 Aligned_cols=113 Identities=23% Similarity=0.342 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcccccc--------ccceeeeEEEEEEEec-CCe--EEEEEeCCCCCcchh------
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSE--------FGGITQHIGAFVVTLK-SGE--QVTFLDTPGHAAFSN------ 178 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~--------~~g~T~~~~~~~v~~~-~~~--~i~liDTpG~~~f~~------ 178 (673)
.+|.++|.+|+|||||+|.|++....... ....+..+......+. ++. +++++||||+.+...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 57999999999999999999987643332 0111222333333222 333 688999999643211
Q ss_pred ------------hhh------h---ccccCCeEEEEEECC-CCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 179 ------------MRS------R---GAHCTDIVVLVVAAD-DGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 179 ------------~~~------~---~~~~aD~~vlVvda~-~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
... + .=...|++++.++++ ++..+.+.+.++.+.. .+++|-|+.|.|...
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 110 0 013468999999986 5788888888887765 478999999999864
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=7.3e-07 Score=90.95 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=83.0
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCC-hH-hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccC
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGV-ME-QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~-q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~ 250 (673)
+++|..+....++.+|.+++|+|+.++. .. ...+++..+...++|+++|+||+||.+.... ..+..... ..+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~-~~~~~~~~----~~~- 96 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDM-EKEQLDIY----RNI- 96 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHH-HHHHHHHH----HHC-
Confidence 3667777667889999999999999754 33 3344555666689999999999999643211 11222211 111
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
..+++++||++|.|++++++.+... .......+|.|-..|+..|...
T Consensus 97 -g~~v~~~SAktg~gi~eLf~~l~~~-------------------~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 97 -GYQVLMTSSKNQDGLKELIEALQNR-------------------ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred -CCeEEEEecCCchhHHHHHhhhcCC-------------------EEEEECCCCCCHHHHHHHHhhh
Confidence 3579999999999999999877431 1245556899999999988643
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.43 E-value=4e-07 Score=87.61 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=45.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
....+++++|.||+|||||+|+|++... ..+..+|+|.+..... + +..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--e--CCCEEEEECcCC
Confidence 3457899999999999999999998664 6677899998765433 3 246899999994
No 347
>KOG1954|consensus
Probab=98.43 E-value=2e-06 Score=88.63 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcccccccc--ceeeeEEEEEE------------Eec-------------------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG--GITQHIGAFVV------------TLK------------------- 160 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~--g~T~~~~~~~v------------~~~------------------- 160 (673)
..|-|.++|.-..||||+++.|+...+...+.+ .+|-.+..... ..+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 347799999999999999999998775432211 01111111000 000
Q ss_pred ------CC--eEEEEEeCCCC-----------CcchhhhhhccccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEE
Q psy4665 161 ------SG--EQVTFLDTPGH-----------AAFSNMRSRGAHCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIV 220 (673)
Q Consensus 161 ------~~--~~i~liDTpG~-----------~~f~~~~~~~~~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~Iv 220 (673)
+. ..++++||||. .+|....+-.+..+|.++|++|+.. .+.....+++..++...-.+-|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 00 13899999994 4566666667789999999999986 6777889999999888788899
Q ss_pred EEecCCCCC
Q psy4665 221 AINKIDKPA 229 (673)
Q Consensus 221 viNK~Dl~~ 229 (673)
|+||.|..+
T Consensus 217 VLNKADqVd 225 (532)
T KOG1954|consen 217 VLNKADQVD 225 (532)
T ss_pred EeccccccC
Confidence 999999874
No 348
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.41 E-value=1.2e-06 Score=73.72 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=67.6
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~ 649 (673)
+.|..+|.++ ..+.++..+|..|.++.|.++.+...+. .++|+||+.++++++++.+|++++|.|.+.+. +++
T Consensus 3 ~~i~~~~~~~---~~g~vv~G~v~sG~i~~g~~v~~~p~~~---~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 3 LPIDRVFTVK---GQGTVVTGTVLSGSVKVGDKVEILPLGE---ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred EEEEEEEEcC---CcEEEEEEEEeecEEeCCCEEEECCCCc---eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 4567788764 2345777799999999999999999874 48999999999999999999999999998643 899
Q ss_pred CCCEEEE
Q psy4665 650 PGDTIVC 656 (673)
Q Consensus 650 ~gD~i~~ 656 (673)
.||++-|
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9998753
No 349
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.39 E-value=2e-06 Score=72.28 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=63.0
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCCCC-
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKIN- 404 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~- 404 (673)
|++..|.+++..+ .|+++.++|.+|++++||.+.+.+. ..+|++|+ +.++++|.|||. |++ .++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~------v~~--~l~~~~ 71 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGEN------VRL--KLKGID 71 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCE------EEE--EECCCC
Confidence 5788999999888 9999999999999999999987664 46888887 889999999999 873 33432
Q ss_pred -CCCCCCCeEee
Q psy4665 405 -PFCPSGDVDGS 415 (673)
Q Consensus 405 -~~~~~Gd~l~~ 415 (673)
..+++||+++.
T Consensus 72 ~~~v~~G~vl~~ 83 (83)
T cd03698 72 EEDISPGDVLCS 83 (83)
T ss_pred HHHCCCCCEEeC
Confidence 24668999873
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.37 E-value=7.4e-07 Score=84.54 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=43.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
+..+|+++|.+|+|||||+|+|++.. ...+..+|+|.+... +.. +..+.|+||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL--MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc--CCCEEEEECcCC
Confidence 35679999999999999999999865 456677888876543 333 345889999994
No 351
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.36 E-value=2.1e-06 Score=72.81 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=62.3
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc------ceEEEEec--ccccceeccCccccccCcEEEee-eC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA------WAKVRSIS--RKTLINTALGTVQRTSGTVKISL-GF 401 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~------~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~-gl 401 (673)
|...|.+++..++.|+++.++|.+|++++||.+++++. ..+|++|+ +.++++|.|||. +++.+ ++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~------v~l~l~~i 74 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQS------ASLALKKI 74 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCE------EEEEEcCC
Confidence 35678888888999999999999999999999988775 45888887 889999999999 87432 33
Q ss_pred CCCCCCCCCCeEe
Q psy4665 402 KINPFCPSGDVDG 414 (673)
Q Consensus 402 ~~~~~~~~Gd~l~ 414 (673)
+ ...+++|++++
T Consensus 75 ~-~~~i~~G~vl~ 86 (87)
T cd03694 75 D-RSLLRKGMVLV 86 (87)
T ss_pred C-HHHcCCccEEe
Confidence 2 24466899886
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.34 E-value=3.8e-06 Score=82.29 Aligned_cols=129 Identities=27% Similarity=0.251 Sum_probs=83.6
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccc
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVED 248 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~ 248 (673)
|.+..|..++..++..+|++++|+|+++.......+. .....+.|+++|+||+|+..... ........... ...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA--AAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH--Hhh
Confidence 4444478888888999999999999988543333332 12235789999999999964321 22222220000 000
Q ss_pred cC-CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 249 LG-GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 249 ~~-~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
.+ ...+++++||++|.|++++++.+.+... .+ ..+..-..+|.|-..|++.|...
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~----~~----------~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK----KG----------GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh----cC----------CcEEEEcCCCCCHHHHHHHHHHh
Confidence 11 1135899999999999999999877642 11 11245567789999999999764
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.33 E-value=7e-06 Score=77.83 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=80.2
Q ss_pred hccccCCeEEEEEECCCCChHhhHHHHHHHHH--cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVESIRMARE--AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~--~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
+.+..+|++++|+|++++.........+.+.. .++|+++|+||+|+... +.....+...... + ....+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~~~~~~~~~~---~--~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTARWVKILSKE---Y--PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHHHHHHHHhcC---C--cEEEEEee
Confidence 46788999999999998766666666666654 34899999999999632 2233333332111 1 12368999
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
|+.+.|++++.+.+.+..... .. ..... +.....+|.|-..|++.|..
T Consensus 77 a~~~~~~~~L~~~l~~~~~~~-~~-------~~~~~-v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSKLH-SD-------KKQIS-VGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ccccccHHHHHHHHHHHHhhh-cc-------ccceE-EEEEeCCCCChHHHHHHHhc
Confidence 999999999999987654310 00 01122 23456789999999999864
No 354
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.31 E-value=1.4e-06 Score=92.65 Aligned_cols=83 Identities=23% Similarity=0.136 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCC----------------eEEEEEeCCCCCc---
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSG----------------EQVTFLDTPGHAA--- 175 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~----------------~~i~liDTpG~~~--- 175 (673)
.+++|+|.||+|||||+++|++... ...++|++|.++....+..++. ..+.++|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999988 7788899999888887777543 2588999999632
Q ss_pred ----chhhhhhccccCCeEEEEEECCC
Q psy4665 176 ----FSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 176 ----f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
..+.....++.+|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22333446788999999999864
No 355
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.31 E-value=6.9e-07 Score=84.17 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCeeEEEccCCCcccCcCCcccccCCCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCcc-cc-----c
Q psy4665 70 VIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV-VK-----S 143 (673)
Q Consensus 70 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~-----~ 143 (673)
......+++|+++..+...+... ++..+ .. -+..+++++|++|||||||+|+|..... .. .
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g-----~~~l~-------~~-l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~ 69 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEG-----IEELK-------EL-LKGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEK 69 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTT-----HHHHH-------HH-HTTSEEEEECSTTSSHHHHHHHHHTSS----S-----
T ss_pred HHHHHHHHcCCcEEEEeCCCCcC-----HHHHH-------HH-hcCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcc
Confidence 45577899999999988221111 11110 11 1237899999999999999999988632 11 1
Q ss_pred cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 144 EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 144 ~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
..+|.........+.++++ ..++||||+.+|.-
T Consensus 70 ~~rGkHTTt~~~l~~l~~g--~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 70 TGRGKHTTTHRELFPLPDG--GYIIDTPGFRSFGL 102 (161)
T ss_dssp ---------SEEEEEETTS--EEEECSHHHHT--G
T ss_pred cCCCcccCCCeeEEecCCC--cEEEECCCCCcccc
Confidence 1122211122334445333 57999999766543
No 356
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.30 E-value=4.8e-06 Score=68.68 Aligned_cols=80 Identities=29% Similarity=0.345 Sum_probs=68.1
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEP 650 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~ 650 (673)
+.|..+|... +.+.++.|+|.+|.+++|..+++.+.+ .-+..+|.+|++.+.++.++.+|+.|++.+.+++ +++.
T Consensus 3 ~~v~~~~~~~---~~g~v~~~rv~~G~l~~g~~v~~~~~~-~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~-~~~~ 77 (83)
T cd01342 3 ALVFKVFKDK---GRGTVATGRVESGTLKKGDKVRVGPGG-GGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD-DIKI 77 (83)
T ss_pred eEEEEEEEeC---CceEEEEEEEeeCEEecCCEEEEecCC-ceeEEEEeEeEecCceeceecCCCEEEEEEcccc-ccCC
Confidence 4566777655 345799999999999999999999852 2346799999999999999999999999999888 9999
Q ss_pred CCEEE
Q psy4665 651 GDTIV 655 (673)
Q Consensus 651 gD~i~ 655 (673)
||.+.
T Consensus 78 g~~l~ 82 (83)
T cd01342 78 GDTLT 82 (83)
T ss_pred CCEec
Confidence 99874
No 357
>KOG1487|consensus
Probab=98.26 E-value=2.9e-06 Score=83.62 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~~~a 187 (673)
.-+|.++|.|.+|||||+..|.+........-++|.........+ ++.++.+.|.||.-+-. ......++.|
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 447999999999999999999998766666667776665555656 78899999999962211 2233456889
Q ss_pred CeEEEEEECCCCC
Q psy4665 188 DIVVLVVAADDGV 200 (673)
Q Consensus 188 D~~vlVvda~~g~ 200 (673)
.++++|.|+-.+.
T Consensus 138 nli~~vld~~kp~ 150 (358)
T KOG1487|consen 138 NLIFIVLDVLKPL 150 (358)
T ss_pred cEEEEEeeccCcc
Confidence 9999999987643
No 358
>KOG1491|consensus
Probab=98.25 E-value=2.2e-06 Score=87.95 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC----------------eEEEEEeCCCCCc---
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG----------------EQVTFLDTPGHAA--- 175 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~----------------~~i~liDTpG~~~--- 175 (673)
.+.++|+|.||+|||||+|+|+.........|++|+++....+..++. ..++++|++|.-.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 358999999999999999999999998999999999998887776421 1489999999522
Q ss_pred ----chhhhhhccccCCeEEEEEECCC
Q psy4665 176 ----FSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 176 ----f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
..+.....++.+|+++.|+++..
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 22333345688999999999875
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.25 E-value=1.2e-06 Score=85.82 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=43.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc---------cccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS---------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~---------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
....++++|.+|+|||||+|+|++.. ...+..+|+|.+.....+ . ..+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~--~~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--G--NGKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--C--CCCEEEeCcCC
Confidence 34689999999999999999998743 345567888888754443 1 25799999994
No 360
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.23 E-value=4.5e-06 Score=71.95 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=53.7
Q ss_pred EEEEEEEEeecCC-cEEEEEEeeecEEeeCCEEEe-CCc----------ceEEEEec------ccccceeccCccccccC
Q psy4665 332 EAMIVESKFDTHR-GKLATALVQRGTLKKGAIVVA-GQA----------WAKVRSIS------RKTLINTALGTVQRTSG 393 (673)
Q Consensus 332 ~~~V~e~~~~~~~-G~v~~~~V~~G~Lk~g~~v~~-g~~----------~~kvr~i~------~~~v~~a~~G~~~~~~g 393 (673)
.++||++..++.. |.++++||++|+|++|+.+++ ++. ..++..|+ ..++++|.|||+
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdI----- 76 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNW----- 76 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCE-----
Confidence 5789999999987 679999999999999999954 211 24554554 467999999999
Q ss_pred cEEEeeeCCCCCC
Q psy4665 394 TVKISLGFKINPF 406 (673)
Q Consensus 394 ~v~~i~gl~~~~~ 406 (673)
|. +.|+++...
T Consensus 77 -v~-v~gl~~~~~ 87 (94)
T cd04090 77 -VL-IKGIDSSIV 87 (94)
T ss_pred -EE-EECcchhee
Confidence 88 889876443
No 361
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.23 E-value=8.2e-06 Score=68.19 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=65.8
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEP 650 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~ 650 (673)
+-|..+|+++. .+..+..+|..|.++.|.++.++..+.. .+|+|++.+.++++++..|+.|||.|.+.+ +++.
T Consensus 3 ~~V~dv~k~~~---~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~---~~V~si~~~~~~~~~a~aGd~v~l~l~~~~-~i~~ 75 (81)
T cd03695 3 FPVQYVIRPNA---DFRGYAGTIASGSIRVGDEVVVLPSGKT---SRVKSIETFDGELDEAGAGESVTLTLEDEI-DVSR 75 (81)
T ss_pred eeEEEEEeeCC---CcEEEEEEEccceEECCCEEEEcCCCCe---EEEEEEEECCcEeCEEcCCCEEEEEECCcc-ccCC
Confidence 45778887651 2234555999999999999999998754 599999999999999999999999999866 9999
Q ss_pred CCEEE
Q psy4665 651 GDTIV 655 (673)
Q Consensus 651 gD~i~ 655 (673)
||+|-
T Consensus 76 G~vl~ 80 (81)
T cd03695 76 GDVIV 80 (81)
T ss_pred CCEEe
Confidence 99973
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.22 E-value=8.8e-06 Score=78.36 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=82.0
Q ss_pred CCCCC-cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccc
Q psy4665 170 TPGHA-AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVED 248 (673)
Q Consensus 170 TpG~~-~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~ 248 (673)
-|||. .........+..||++++|+|++++........+..+ .+.|+++++||+|+.+. +.....+.....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~---- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KKTKKWLKYFES---- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HHHHHHHHHHHh----
Confidence 36763 3344455688999999999999886655444444433 36899999999999642 222111111100
Q ss_pred cCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 249 LGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 249 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
. ...++++||+++.|++++.+.+........+.. ........+ .+..-..++.|-..|+..+..
T Consensus 74 ~--~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~-~~~~~~~~~-~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 74 K--GEKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLK-AKGLLPRGI-RAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHHHHhhhh-hcccCCCCe-EEEEECCCCCCHHHHHHHHhC
Confidence 0 236799999999999999999877642211000 000000111 223344678888899888864
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.22 E-value=2.3e-06 Score=80.93 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
.+..+++++|++|+|||||+|+|++.. ...++.+++|.+..... + +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--L--DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--e--cCCEEEEECCCC
Confidence 456889999999999999999999876 45566678888765433 3 346999999994
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.20 E-value=1.4e-05 Score=75.71 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=75.6
Q ss_pred CeEEEEEECCCCChHhhHHHH-HHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 188 DIVVLVVAADDGVMEQTVESI-RMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l-~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|++++|+|+.++......... ..+...++|+|+|+||+|+... +...+.+.... ... ..+++++||+++.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~----~~~-~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLR----HSY-PTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHH----hhC-CceEEEEeccCCcCh
Confidence 789999999987665554444 4556678999999999999542 22222221111 111 256899999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 267 DNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 267 ~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
+++.+.+.+........-......... ..+.+-...|.|-..|++.|..
T Consensus 74 ~~L~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 74 EKKESAFTKQTNSNLKSYAKDGKLKKS-ITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred hhHHHHHHHHhHHHHHHHHhccccccC-cEEEEEccCCCCHHHHHHHHHc
Confidence 999998866532211100000001111 2234566788899999998875
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=1e-05 Score=84.19 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=83.4
Q ss_pred CCCC-cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcccccc
Q psy4665 171 PGHA-AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDL 249 (673)
Q Consensus 171 pG~~-~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~ 249 (673)
|||. .........+..+|++++|+|+.++.........+.+ .+.|+++|+||+|+.+. .......... ...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~~~~~~~~~----~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AVTKQWLKYF----EEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HHHHHHHHHH----HHc
Confidence 7773 2334455688999999999999887665555444444 37899999999999632 2122221111 001
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
..+++++||+++.|+++|.+.+.+..................+. +.+-...|.|-..|++.|..
T Consensus 77 --~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 77 --GIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIR-AMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred --CCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeE-EEEECCCCCCHHHHHHHHhC
Confidence 24689999999999999998887765432210000000011122 23345688899999998853
No 366
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.19 E-value=1e-05 Score=67.77 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=59.9
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCC--C
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFK--I 403 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~--~ 403 (673)
|++..|.+++... |++..++|.+|++++||.+.+.+. ..+|++|. +.++++|.|||. |++ .|+ +
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~------v~l--~l~~i~ 70 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGEN------VRL--RLKGIE 70 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCE------EEE--EecCCC
Confidence 5778888888653 899999999999999999987764 46788877 888999999999 884 333 2
Q ss_pred CCCCCCCCeEe
Q psy4665 404 NPFCPSGDVDG 414 (673)
Q Consensus 404 ~~~~~~Gd~l~ 414 (673)
...+.+||+++
T Consensus 71 ~~~v~~G~vl~ 81 (82)
T cd04089 71 EEDISPGFVLC 81 (82)
T ss_pred HHHCCCCCEEe
Confidence 23466899887
No 367
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.18 E-value=6.2e-06 Score=70.92 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=56.6
Q ss_pred EEEEEEEEeec-CCcEEEEEEeeecEEeeCCEEEeCC---------cc--eEEEEec------ccccceeccCccccccC
Q psy4665 332 EAMIVESKFDT-HRGKLATALVQRGTLKKGAIVVAGQ---------AW--AKVRSIS------RKTLINTALGTVQRTSG 393 (673)
Q Consensus 332 ~~~V~e~~~~~-~~G~v~~~~V~~G~Lk~g~~v~~g~---------~~--~kvr~i~------~~~v~~a~~G~~~~~~g 393 (673)
.++||++..++ +.|+++++||++|+|++|+.+++.. .. .++..++ ..++++|.|||+
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdI----- 76 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNI----- 76 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCE-----
Confidence 47899999999 9999999999999999999996432 11 3344444 467899999999
Q ss_pred cEEEeeeCCCCCCCCCCCeE
Q psy4665 394 TVKISLGFKINPFCPSGDVD 413 (673)
Q Consensus 394 ~v~~i~gl~~~~~~~~Gd~l 413 (673)
|. +.|++++. .||+.
T Consensus 77 -v~-i~g~~~~~---~g~~~ 91 (93)
T cd03700 77 -VL-IVGLDQLK---SGTTA 91 (93)
T ss_pred -EE-EECCccCc---eEeEe
Confidence 88 88887643 58864
No 368
>KOG0052|consensus
Probab=98.17 E-value=6.2e-06 Score=86.69 Aligned_cols=115 Identities=32% Similarity=0.378 Sum_probs=84.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC-------cc---------------------ccccccceeeeEEEEEEEecCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT-------SV---------------------VKSEFGGITQHIGAFVVTLKSGEQV 165 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~-------~~---------------------~~~~~~g~T~~~~~~~v~~~~~~~i 165 (673)
-.++++++||.++||||+.-..++. .+ .....+++++++....+.. ....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t-~k~~i 84 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYV 84 (391)
T ss_pred cccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc-eeEEE
Confidence 3578999999999999987632110 00 0111234665554444433 34578
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-------ChHhhHHHHHHHHHcCC-CEEEEEecCCCCC
Q psy4665 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-------VMEQTVESIRMAREAKV-PIIVAINKIDKPA 229 (673)
Q Consensus 166 ~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-------~~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~ 229 (673)
+++|.|||.+|...+..+.++||.+++.+.+..| ...|+.++......+++ ++++.+||||...
T Consensus 85 ~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 85 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 8999999999999999899999999999999543 23588998888888875 6899999999854
No 369
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.15 E-value=1.3e-05 Score=67.29 Aligned_cols=76 Identities=24% Similarity=0.163 Sum_probs=61.4
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCCCC--
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKIN-- 404 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~-- 404 (673)
++..|.+++..++.|.+..++|.+|++++|+.+...+. .++|++|. ++++++|.|||. |++. +++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~------v~i~--l~~~~~ 72 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDR------VALN--LTGVDA 72 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCE------EEEE--EcCCCH
Confidence 35678888888899999999999999999999987664 57888887 888999999999 8843 3332
Q ss_pred CCCCCCCeEe
Q psy4665 405 PFCPSGDVDG 414 (673)
Q Consensus 405 ~~~~~Gd~l~ 414 (673)
..+.+||+++
T Consensus 73 ~~i~~G~vl~ 82 (83)
T cd03696 73 KDLERGDVLS 82 (83)
T ss_pred HHcCCccEEc
Confidence 3466899886
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.15 E-value=4.2e-06 Score=87.52 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=46.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
.+..+++++|.||+|||||+|+|++... ..+..+|+|.+... +.+ +..+.|+||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKL--GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEe--CCcEEEEECCCc
Confidence 3457899999999999999999998764 66778899988743 333 346899999997
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.13 E-value=5.1e-06 Score=79.99 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=44.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
...++++++|.+|+|||||+|+|.+... .....+++|.+.....+ . ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~--~--~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI--S--PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe--c--CCEEEEECCCC
Confidence 3457899999999999999999998775 44556778877654333 2 46899999995
No 372
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.13 E-value=2.2e-05 Score=65.61 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEeeeCCCCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINPFC 407 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~ 407 (673)
+..|.+.+...+.|..+.++|.+|++++||.+++.+. ..+|++|. +.++++|.|||. |++.+ ++...+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~------v~l~l--~~~~~i 73 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGES------VTLTL--EDEIDV 73 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCE------EEEEE--CCcccc
Confidence 4667788877777788999999999999999977664 46888877 889999999999 88433 344457
Q ss_pred CCCCeEe
Q psy4665 408 PSGDVDG 414 (673)
Q Consensus 408 ~~Gd~l~ 414 (673)
.+||+|+
T Consensus 74 ~~G~vl~ 80 (81)
T cd03695 74 SRGDVIV 80 (81)
T ss_pred CCCCEEe
Confidence 7899987
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=8.1e-06 Score=87.29 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=74.8
Q ss_pred ccccCCeEEEEEECCCCC-hH-hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeec
Q psy4665 183 GAHCTDIVVLVVAADDGV-ME-QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~-~~-q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA 260 (673)
.+..+|.+++|+|+.++. .. ...+.+..+...++|+++|+||+|+... ++........ ..+ .++++++||
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~~~~~~~~----~~~--g~~v~~iSA 157 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQQQWQDRL----QQW--GYQPLFISV 157 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHHHHHHHHH----Hhc--CCeEEEEEc
Confidence 578899999999998754 22 3345555666679999999999999642 2222221111 111 246899999
Q ss_pred cCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 261 LTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
+++.|+++|++.+... ...+...+|.|-..|++.|.
T Consensus 158 ~tg~GI~eL~~~L~~k-------------------i~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 158 ETGIGLEALLEQLRNK-------------------ITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred CCCCCHHHHhhhhccc-------------------eEEEEeCCCCCHHHHHHHHc
Confidence 9999999999887432 12456678999999999886
No 374
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.12 E-value=1.3e-05 Score=67.88 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=67.5
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeC--CEEEEEEeeecccccccccccccccceeEEEEcCCCC-C
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRR--NEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-E 647 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~--~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~ 647 (673)
.-|..+|.++ ..++|+..+|..|.+++|.++.+... |+ -+..+|+||+.+++.++++.+|+.|++.|.+.+. +
T Consensus 3 ~~I~~vf~v~---g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~ 78 (87)
T cd03694 3 FQIDEIYSVP---GVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-FRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSL 78 (87)
T ss_pred EEEEeEEEcC---CcceEEEEEEecCEEeCCCEEEECCCCCCC-EeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHH
Confidence 4567788775 34578888999999999999999997 43 1247999999999999999999999999987543 8
Q ss_pred CCCCCEEE
Q psy4665 648 FEPGDTIV 655 (673)
Q Consensus 648 ~~~gD~i~ 655 (673)
++.||++-
T Consensus 79 i~~G~vl~ 86 (87)
T cd03694 79 LRKGMVLV 86 (87)
T ss_pred cCCccEEe
Confidence 99999873
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.11 E-value=5.1e-06 Score=86.45 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=45.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
+..+++++|.||+|||||+|+|++.. ...+..+|+|..... +.+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKL--SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEe--CCCEEEEECCCc
Confidence 45789999999999999999999876 456677888887643 333 236899999997
No 376
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.10 E-value=1.9e-05 Score=66.34 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~ 649 (673)
+.|..+|..+ .+.++..+|..|.++.|..+.+.+.++. .+|+||+.++++++++.+|+.+++.|.+.+. +++
T Consensus 4 ~~V~~v~~~~----~g~vv~G~v~~G~i~~Gd~v~i~P~~~~---~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~ 76 (83)
T cd03698 4 LPISDKYKDQ----GGTVVSGKVESGSIQKGDTLLVMPSKES---VEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDIS 76 (83)
T ss_pred EEEEeEEEcC----CCcEEEEEEeeeEEeCCCEEEEeCCCcE---EEEEEEEECCeECCEECCCCEEEEEECCCCHHHCC
Confidence 4567778654 3467777999999999999999998864 6999999999999999999999999997553 899
Q ss_pred CCCEEE
Q psy4665 650 PGDTIV 655 (673)
Q Consensus 650 ~gD~i~ 655 (673)
.||+|-
T Consensus 77 ~G~vl~ 82 (83)
T cd03698 77 PGDVLC 82 (83)
T ss_pred CCCEEe
Confidence 999873
No 377
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.10 E-value=3e-06 Score=91.48 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=66.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh-------h
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS-------R 182 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~-------~ 182 (673)
..|.++|.+|+|||||+|+|++.. ...+..||+|.+.... .+ +..+.++||||......+.. .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 589999999999999999998743 3566778999886543 33 23467999999754322111 0
Q ss_pred c---cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 183 G---AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 183 ~---~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
. -.......+.++............+..+...+.++.++++|.+...
T Consensus 231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred hcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 1 1233455666665553333222222223333455677777776643
No 378
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4.5e-06 Score=88.56 Aligned_cols=57 Identities=33% Similarity=0.439 Sum_probs=46.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
.+..++.++|.||+|||||+|+|++... .++..||+|.+.....+ ...+.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~----~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL----DDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc----CCCeEEecCCCc
Confidence 3457799999999999999999998864 67778999987754443 234899999995
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.07 E-value=2e-05 Score=82.54 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=84.6
Q ss_pred CCCCCc-chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccc
Q psy4665 170 TPGHAA-FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVED 248 (673)
Q Consensus 170 TpG~~~-f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~ 248 (673)
-|||.. -.......+..+|++++|+|+.++...........+. +.|+++|+||+|+.+. ......+... +.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~--~~~~~~~~~~----~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP--EVTKKWIEYF----EE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH--HHHHHHHHHH----HH
Confidence 477742 2334456789999999999998876655544444432 7899999999999632 2222222111 00
Q ss_pred cCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 249 LGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 249 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
. ..+++++||+++.|++++.+.+.+.............-....+ .+.+-...|.|-..|++.|..
T Consensus 79 ~--~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 79 Q--GIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAI-RAMIIGIPNVGKSTLINRLAG 143 (287)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCce-EEEEECCCCCCHHHHHHHHhc
Confidence 0 2468999999999999999988776544321100000001111 223455688899999998864
No 380
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.07 E-value=1.5e-05 Score=67.57 Aligned_cols=77 Identities=26% Similarity=0.166 Sum_probs=61.1
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC----cceEEEEec--ccccceeccCccccccCcEEEeeeCCCC-
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ----AWAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKIN- 404 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~----~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~- 404 (673)
+..|.+++..++.|++..++|.+|++++||.+.+.+ ...+|++|. +.++++|.|||. |++ .++++
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~------v~l--~l~~~~ 73 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDN------VGV--LLRGVK 73 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCE------EEE--EECCCC
Confidence 567778888889999999999999999999996543 347899987 889999999999 884 33322
Q ss_pred -CCCCCCCeEeec
Q psy4665 405 -PFCPSGDVDGSV 416 (673)
Q Consensus 405 -~~~~~Gd~l~~~ 416 (673)
..+.+|++|+..
T Consensus 74 ~~~v~rG~vl~~~ 86 (87)
T cd03697 74 REDVERGMVLAKP 86 (87)
T ss_pred HHHcCCccEEecC
Confidence 345689998853
No 381
>KOG0448|consensus
Probab=98.07 E-value=2.2e-05 Score=87.31 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=80.0
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCcccccccccee-----------------------------------------
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT----------------------------------------- 149 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T----------------------------------------- 149 (673)
...+..+|+|.|.+++||||++|+++..++.++..+.+|
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 345678899999999999999999987654433221111
Q ss_pred --eeEEEEEEEecCCe------EEEEEeCCCCC---cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-
Q psy4665 150 --QHIGAFVVTLKSGE------QVTFLDTPGHA---AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP- 217 (673)
Q Consensus 150 --~~~~~~~v~~~~~~------~i~liDTpG~~---~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP- 217 (673)
-......+.|+++. .+.++|.||.. .+..........+|++|||+.|.+..+......+...... .|
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kpn 263 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPN 263 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCc
Confidence 01112234444431 47899999964 3444455566889999999999886665555555555544 66
Q ss_pred EEEEEecCCCCCC
Q psy4665 218 IIVAINKIDKPAA 230 (673)
Q Consensus 218 ~IvviNK~Dl~~~ 230 (673)
++|+.||||....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 7888899998643
No 382
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.05 E-value=2.4e-05 Score=72.74 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=68.7
Q ss_pred hhccccCCeEEEEEECCCCChHhhHHHHHHHHHc--CCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEE
Q psy4665 181 SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA--KVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 181 ~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
.+.+..+|++++|+|+.++...+..+..+.+... ++|+++++||+|+..... ....+.+... ..++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~---------~~~ii~ 76 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKE---------GIVVVF 76 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhc---------CCeEEE
Confidence 4577899999999999998877777777777665 899999999999953211 1111222211 246899
Q ss_pred eeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
+||.++.+ .+..-..+|.|-..|+..+.
T Consensus 77 iSa~~~~~------------------------------~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 77 FSALKENA------------------------------TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEecCCCc------------------------------EEEEECCCCCCHHHHHHHHh
Confidence 99998875 01445667888888988875
No 383
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.03 E-value=2.9e-05 Score=65.02 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=64.8
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~ 649 (673)
+.|..+|... +.++..+|..|.++.|..+.+...++. .+|+|++.++++++++.+|+.|++.|++.+. +++
T Consensus 4 ~~I~~v~~~~-----g~vv~G~v~~G~i~~G~~v~i~P~~~~---~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~ 75 (82)
T cd04089 4 LPIIDKYKDM-----GTVVLGKVESGTIKKGDKLLVMPNKTQ---VEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDIS 75 (82)
T ss_pred EEEEeEEEcC-----CEEEEEEEeeeEEecCCEEEEeCCCcE---EEEEEEEECCEECCEECCCCEEEEEecCCCHHHCC
Confidence 4566777532 457777999999999999999998864 6999999999999999999999999996542 899
Q ss_pred CCCEEE
Q psy4665 650 PGDTIV 655 (673)
Q Consensus 650 ~gD~i~ 655 (673)
.||+|-
T Consensus 76 ~G~vl~ 81 (82)
T cd04089 76 PGFVLC 81 (82)
T ss_pred CCCEEe
Confidence 999874
No 384
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.02 E-value=1.1e-05 Score=81.10 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC--cccccc-ccceeeeEEEEEEEec--CCeEEEEEeCCCCCcchh------hhhh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT--SVVKSE-FGGITQHIGAFVVTLK--SGEQVTFLDTPGHAAFSN------MRSR 182 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~--~~~~~~-~~g~T~~~~~~~v~~~--~~~~i~liDTpG~~~f~~------~~~~ 182 (673)
....|+|+|++++|||||+|+|++. .+.... ...+|..+........ .+..+.++||||..+... +...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4567999999999999999999998 665443 2455665555544432 357899999999754322 1122
Q ss_pred ccc--cCCeEEEEEECCC
Q psy4665 183 GAH--CTDIVVLVVAADD 198 (673)
Q Consensus 183 ~~~--~aD~~vlVvda~~ 198 (673)
++. .+|++|+.++...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 333 4899998888764
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=97.98 E-value=2.1e-05 Score=82.76 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=73.6
Q ss_pred ccccCCeEEEEEECCCCCh-Hh-hHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeec
Q psy4665 183 GAHCTDIVVLVVAADDGVM-EQ-TVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~-~q-~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA 260 (673)
.+..+|.+++|+|+.++.. .. ..+.+..+...++|+++|+||+|+.+. .+......... ..+ ..+++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~-~~~~~~~~~~~----~~~--g~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD-LEEARELLALY----RAI--GYDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC-HHHHHHHHHHH----HHC--CCeEEEEeC
Confidence 3588999999999976532 22 234555567789999999999999632 22222221111 111 257899999
Q ss_pred cCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 261 LTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
+++.|+++|++.+.. ..+.....+|.|-..|+..|.
T Consensus 150 ~~g~gi~~L~~~l~g-------------------k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 150 KEGEGLDELKPLLAG-------------------KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred CCCccHHHHHhhccC-------------------ceEEEECCCCCCHHHHHHHHh
Confidence 999999999887631 122566778999999999885
No 386
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.96 E-value=6.3e-05 Score=78.64 Aligned_cols=116 Identities=24% Similarity=0.347 Sum_probs=76.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccc----c-c---ceeeeEEEEEEEec-CCe--EEEEEeCCCCCcchhh--
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE----F-G---GITQHIGAFVVTLK-SGE--QVTFLDTPGHAAFSNM-- 179 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~----~-~---g~T~~~~~~~v~~~-~~~--~i~liDTpG~~~f~~~-- 179 (673)
.-..+|-++|.+|.||||++|.|++....... . + ..|..+......+. ++. +++++||||+-+|...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 34689999999999999999999887433221 1 1 12333333333332 343 6788999997554311
Q ss_pred -hh---------------------hc--c--ccCCeEEEEEECC-CCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 180 -RS---------------------RG--A--HCTDIVVLVVAAD-DGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 180 -~~---------------------~~--~--~~aD~~vlVvda~-~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
|. |. . ...++|++.+.++ +|+.+.+.+.++.+.. .+-+|-|+-|.|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC
Confidence 00 11 1 3357888888765 5899999998887764 466888999999854
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.95 E-value=6.3e-05 Score=79.53 Aligned_cols=145 Identities=22% Similarity=0.228 Sum_probs=79.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------ccc--ccc---------------ccceeeeEEE---EE-------E--
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SVV--KSE---------------FGGITQHIGA---FV-------V-- 157 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~~--~~~---------------~~g~T~~~~~---~~-------v-- 157 (673)
.++..++++|++|+||||++..|... ++. ..+ ..++...... .. +
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988532 110 000 0111100000 00 0
Q ss_pred EecCCeEEEEEeCCCCCcchhh----hh---hc-----cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecC
Q psy4665 158 TLKSGEQVTFLDTPGHAAFSNM----RS---RG-----AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225 (673)
Q Consensus 158 ~~~~~~~i~liDTpG~~~f~~~----~~---~~-----~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~ 225 (673)
....+..+.|+||||...+... .. +. ....+..++|+|++.+... ..........--+.-+++||+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~--~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA--LSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH--HHHHHHHHhhCCCCEEEEECC
Confidence 0014567999999996443221 11 11 1346788999999965322 222222222122467899999
Q ss_pred CCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHH
Q psy4665 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271 (673)
Q Consensus 226 Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 271 (673)
|.. +..-.+...+... ..|+.+++ +|++++++..
T Consensus 270 D~t-~~~G~~l~~~~~~---------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGT-AKGGVVFAIADEL---------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC-CCccHHHHHHHHH---------CCCEEEEe--CCCChhhCcc
Confidence 964 3333444444443 24667777 7888776644
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.95 E-value=3.3e-05 Score=80.77 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=74.8
Q ss_pred ccccCCeEEEEEECCCCC-hHh-hHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeec
Q psy4665 183 GAHCTDIVVLVVAADDGV-MEQ-TVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~-~~q-~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA 260 (673)
-+..+|.+++|+|+.++. ... ..+++..+...++|+++|+||+|+..... . ....... ..+ ..+++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~-~-~~~~~~~----~~~--g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEE-E-ELELVEA----LAL--GYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHH-H-HHHHHHH----HhC--CCeEEEEEC
Confidence 368899999999999875 332 33455566678999999999999964321 1 1111110 011 358899999
Q ss_pred cCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 261 LTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
+++.|+++|.+.+.. ..+.....+|.|-..|++.|...
T Consensus 147 ~~g~gi~~L~~~L~~-------------------k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 147 KTGEGLDELREYLKG-------------------KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred CCCccHHHHHhhhcc-------------------ceEEEECCCCCCHHHHHHHHhch
Confidence 999999999887643 12245567889999999988643
No 389
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.93 E-value=0.00022 Score=79.08 Aligned_cols=178 Identities=13% Similarity=0.200 Sum_probs=128.6
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---------CChhhHHHHhhcCC--eEEEEcCCCC------------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---------VSATDVELATLFNA--IIYTFNTTLH------------ 524 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---------it~~Dv~lA~~~~a--~I~~Fnv~~~------------ 524 (673)
-|+-|..+=+.+.+..+....+-+-|+++.-|. -|..=..+|...+- +|++.|= ++
T Consensus 90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK-mD~~~~~~~~~~~~ 168 (447)
T PLN00043 90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK-MDATTPKYSKARYD 168 (447)
T ss_pred EECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc-ccCCchhhhHHHHH
Confidence 699999998888888888888888899998773 44455566666554 4666562 22
Q ss_pred ---HhHHhHHHHcC-----CeEEEec-----hh---------h---HHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEe
Q psy4665 525 ---PAAKTSAEELG-----VTVKQFN-----VI---------Y---KLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLI 579 (673)
Q Consensus 525 ---~~~~~~a~~~~-----V~i~~~~-----iI---------Y---~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~ 579 (673)
.++++..++.| +.++.-+ -| | .|++.+ ....+|.....-.-++.|..+|.+
T Consensus 169 ~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l----~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 169 EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL----DQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHH----hhcCCCccccCCCcEEEEEEEEEe
Confidence 23455556556 3333222 11 2 244444 333344433344566788899987
Q ss_pred cCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 580 TDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 580 ~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
+ ..+.|+..+|..|.+++|..+.+.+.|.. .+|+|++.++++|.++.+|+.|||.|.+.+. +++.||+|-.
T Consensus 245 ~---g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~---~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 245 G---GIGTVPVGRVETGVIKPGMVVTFGPTGLT---TEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred C---CcEEEEEEEEECCEEeeCCEEEEcCCCCE---EEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 6 34578888999999999999999998864 6999999999999999999999999998742 8999999854
No 390
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.93 E-value=3.4e-05 Score=63.13 Aligned_cols=64 Identities=31% Similarity=0.395 Sum_probs=42.1
Q ss_pred cEEEEEEeeecEEeeCCEEEe--CCc--c---eEEEEec--ccccceeccCccccccCc-EEEeeeCCCCCCCCCCCeEe
Q psy4665 345 GKLATALVQRGTLKKGAIVVA--GQA--W---AKVRSIS--RKTLINTALGTVQRTSGT-VKISLGFKINPFCPSGDVDG 414 (673)
Q Consensus 345 G~v~~~~V~~G~Lk~g~~v~~--g~~--~---~kvr~i~--~~~v~~a~~G~~~~~~g~-v~~i~gl~~~~~~~~Gd~l~ 414 (673)
|+++++||++|+|++||.+++ ..+ . .+|+.|+ .....++.+|.. +|. +. +.++++. +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~---~G~~~~-~~~~~~~--i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGAN---AGDIVA-IIGLNDA--IRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEE---EEEEEE-SSSGCSC--SSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCcee---eEEEEE-EcCCCCC--cCcCCEEC
Confidence 789999999999999999987 322 1 7788877 334444444444 000 44 4444441 45899986
No 391
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.92 E-value=2.9e-05 Score=65.85 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=65.2
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~ 649 (673)
+.|..+|++. ..++++-.+|..|.++.|..++++.-+.. ...+|+||+.++++++++.+|+.||+.|++.+. +++
T Consensus 3 ~~V~~v~~~~---g~G~vv~G~v~~G~v~~gd~v~~~p~~~~-~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~ 78 (87)
T cd03697 3 MPIEDVFSIP---GRGTVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVE 78 (87)
T ss_pred eeEEEEEeCC---CcEEEEEEEECCCCCccCCEEEEeCCCCC-ceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcC
Confidence 4566788765 23467777999999999999999874211 246999999999999999999999999997542 899
Q ss_pred CCCEEE
Q psy4665 650 PGDTIV 655 (673)
Q Consensus 650 ~gD~i~ 655 (673)
.||+|-
T Consensus 79 rG~vl~ 84 (87)
T cd03697 79 RGMVLA 84 (87)
T ss_pred CccEEe
Confidence 999873
No 392
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.91 E-value=8.3e-05 Score=77.02 Aligned_cols=144 Identities=24% Similarity=0.257 Sum_probs=78.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------ccc--cc---------------cccceeeeEEEE-----EE--E----
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SVV--KS---------------EFGGITQHIGAF-----VV--T---- 158 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~~--~~---------------~~~g~T~~~~~~-----~v--~---- 158 (673)
.++..++++|++|+||||++..|... ++. .. +..++..-.... .+ .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 34678999999999999999887431 110 00 001111000000 00 0
Q ss_pred -ecCCeEEEEEeCCCCCcchhhhh-------hc-----cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecC
Q psy4665 159 -LKSGEQVTFLDTPGHAAFSNMRS-------RG-----AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225 (673)
Q Consensus 159 -~~~~~~i~liDTpG~~~f~~~~~-------~~-----~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~ 225 (673)
...++.+.|+||||......... +. ...+|..+||+|++.+. ..........+.--+.-+++||+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlTKl 227 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILTKL 227 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEEcc
Confidence 01456899999999754332211 11 12489999999998542 23333333222112468889999
Q ss_pred CCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 226 Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
|... ..-......... ..|+.+++ +|++++++.
T Consensus 228 De~~-~~G~~l~~~~~~---------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTA-KGGIILSIAYEL---------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCC-CccHHHHHHHHH---------CcCEEEEe--CCCChHhCc
Confidence 9843 223333333333 24566666 677776654
No 393
>PRK12289 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.6e-05 Score=84.95 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=39.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc-cccccccc-------eeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGG-------ITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g-------~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
..++|+|++|+|||||+|+|+... ......++ +|.+. ..+.+++|. .|+||||...|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g~--~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNGG--LLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCCc--EEEeCCCccccc
Confidence 358999999999999999998754 33333333 55555 334443343 799999986554
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.89 E-value=2.9e-05 Score=79.86 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=38.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcc-c-----ccccc--ceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSV-V-----KSEFG--GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~-~-----~~~~~--g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
....+++|++|+|||||+|+|..... . ....+ .+|.+. ..+.++.| =.++||||+..|.-
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~--~l~~l~~g--G~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHV--ELFPLPGG--GWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceE--EEEEcCCC--CEEEeCCCCCccCc
Confidence 34789999999999999999986421 1 11112 234333 33444322 24899999877654
No 395
>KOG3905|consensus
Probab=97.89 E-value=0.00024 Score=72.46 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=89.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec---CCeEEEEEeCCCCCcchhhhhhcc---cc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK---SGEQVTFLDTPGHAAFSNMRSRGA---HC 186 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~---~~~~i~liDTpG~~~f~~~~~~~~---~~ 186 (673)
+...+|.++|..++|||||+.+|-+.+ ...+|-...+..-.+... +-.++.+|=..|......+...++ +.
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 345689999999999999999998765 222333333333333221 112455555555443344443333 33
Q ss_pred CC-eEEEEEECCCCCh--HhhHHHHHH-----------------------------------------------------
Q psy4665 187 TD-IVVLVVAADDGVM--EQTVESIRM----------------------------------------------------- 210 (673)
Q Consensus 187 aD-~~vlVvda~~g~~--~q~~~~l~~----------------------------------------------------- 210 (673)
++ ++||++|.+.+.. ++...++..
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 44 5667777776421 111111100
Q ss_pred -----------HHHcCCCEEEEEecCCCCC-----C-----cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 211 -----------AREAKVPIIVAINKIDKPA-----A-----DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 211 -----------~~~~~iP~IvviNK~Dl~~-----~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
...+++|+++|++|||... . .++-+...++...+.. ....|.+|++...|++-|
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~-----GaaLiyTSvKE~KNidll 281 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRY-----GAALIYTSVKETKNIDLL 281 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHc-----CceeEEeecccccchHHH
Confidence 0114789999999999832 1 1223344444432222 357899999999999988
Q ss_pred HHHHHHH
Q psy4665 270 TEAIERT 276 (673)
Q Consensus 270 ~~~i~~~ 276 (673)
..+|...
T Consensus 282 yKYivhr 288 (473)
T KOG3905|consen 282 YKYIVHR 288 (473)
T ss_pred HHHHHHH
Confidence 8877654
No 396
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.88 E-value=1.6e-05 Score=71.50 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccc-eeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG-ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVV 194 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g-~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVv 194 (673)
.+|+++|..++|||+|+.++....+... +. .|.. |........+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYV--PTVFTIG------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcccc--Cceehhh------------------------hhhccccccCCCCEEEEEE
Confidence 3689999999999999999966555322 11 1111 2333344566788888888
Q ss_pred ECCCCChHh--hHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 195 AADDGVMEQ--TVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 195 da~~g~~~q--~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+.+...... +...+.......+|.+++.||.|+.... ...... ..++...|++++.|+.
T Consensus 55 ~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~------------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 55 RVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE------------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH------------HHHHHHHhCCCcchhh
Confidence 887643322 1222222123457889999999984311 111110 1134567888888873
No 397
>KOG2655|consensus
Probab=97.88 E-value=9.9e-05 Score=77.77 Aligned_cols=115 Identities=22% Similarity=0.293 Sum_probs=77.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccc-------cccceeeeEEEEEEEec-CCe--EEEEEeCCCCCcchhh-----
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKS-------EFGGITQHIGAFVVTLK-SGE--QVTFLDTPGHAAFSNM----- 179 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~-------~~~g~T~~~~~~~v~~~-~~~--~i~liDTpG~~~f~~~----- 179 (673)
.+++-++|.+|.|||||+|.|+.+.+... ..+.-|..+....+.+. +|. +++++||||+-++...
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47899999999999999999987754322 11222444444444442 343 6788999996443211
Q ss_pred -------------hh------h-cc--ccCCeEEEEEECC-CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC
Q psy4665 180 -------------RS------R-GA--HCTDIVVLVVAAD-DGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 180 -------------~~------~-~~--~~aD~~vlVvda~-~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~ 230 (673)
.. + .. ...++|++.+..+ +|..+.+.+.++.+.. .+.+|-|+-|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCH
Confidence 00 1 12 2578999999876 4789999888877654 5778889999998643
No 398
>PRK12736 elongation factor Tu; Reviewed
Probab=97.87 E-value=0.00041 Score=75.97 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=124.1
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecC--CCChhhHHHHhhcCC--eEEEEcCC--C-CHhHH--------hHHHH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVG--QVSATDVELATLFNA--IIYTFNTT--L-HPAAK--------TSAEE 533 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG--~it~~Dv~lA~~~~a--~I~~Fnv~--~-~~~~~--------~~a~~ 533 (673)
|+-|--+-+...+..+....+-+-|+.+.-| +-|..=+.++...+- +|+..|=- + +.+.. +..+.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 9999877777787777667777888887655 333333555555553 45666632 1 11221 12222
Q ss_pred cC-----CeEEEechh---------hHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCee
Q psy4665 534 LG-----VTVKQFNVI---------YKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVL 598 (673)
Q Consensus 534 ~~-----V~i~~~~iI---------Y~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~ 598 (673)
.+ +.|+.-+-. |+-++.+.+.+...++ |.....-.-++.|..+|..+ ..++|+..+|.+|.+
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~---g~G~Vv~G~v~~G~l 237 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTIT---GRGTVVTGRVERGTV 237 (394)
T ss_pred hCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecC---CcEEEEEEEEeecEE
Confidence 23 455554433 3335556666665555 33222234567788999876 356899999999999
Q ss_pred eeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 599 KKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 599 ~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
+.|..+.++..+.. ...+|.||+.+.++|+++.+|+.||+.+.+.+. +++.||++-.
T Consensus 238 ~~gd~v~i~p~~~~-~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 238 KVGDEVEIVGIKET-QKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred ecCCEEEEecCCCC-eEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 99999998875321 236999999999999999999999999987643 8999999844
No 399
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.86 E-value=0.00012 Score=60.10 Aligned_cols=75 Identities=29% Similarity=0.316 Sum_probs=58.8
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC--c--ceEEEEec--ccccceeccCccccccCcEEEeeeCCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ--A--WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINP 405 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~--~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~ 405 (673)
.+.|++++.+++.|.+++++|.+|++++|+.+.+.+ . ..+++.++ ..++.++.||+. +. +..... .
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~------~~-~~~~~~-~ 73 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDI------VG-IVLKDK-D 73 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCE------EE-EEEccc-c
Confidence 578899999999999999999999999999997655 2 35666776 778899999999 88 433332 1
Q ss_pred CCCCCCeEe
Q psy4665 406 FCPSGDVDG 414 (673)
Q Consensus 406 ~~~~Gd~l~ 414 (673)
.++.||+++
T Consensus 74 ~~~~g~~l~ 82 (83)
T cd01342 74 DIKIGDTLT 82 (83)
T ss_pred ccCCCCEec
Confidence 455799875
No 400
>PRK12288 GTPase RsgA; Reviewed
Probab=97.85 E-value=7.2e-05 Score=80.01 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=74.3
Q ss_pred cccCCeEEEEEECCCCChHhh-HHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 184 AHCTDIVVLVVAADDGVMEQT-VESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~-~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+.++|.+++|++......... .+++..+...++|.++|+||+|+..... ....+.+..+ ..+ ..+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y----~~~--g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY----RNI--GYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHH----HhC--CCeEEEEeCC
Confidence 467999999999876554433 3344455667899999999999965321 1222222211 111 2589999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
++.|+++|++.+... + ......+|.|-..|++.|..
T Consensus 192 tg~GideL~~~L~~k-----------------i--~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 192 TGEGLEELEAALTGR-----------------I--SIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CCcCHHHHHHHHhhC-----------------C--EEEECCCCCCHHHHHHHhcc
Confidence 999999999888532 1 14556789999999998853
No 401
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.83 E-value=0.00033 Score=77.67 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=120.2
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC-----CChhhHHHHhhcC-C-eEEEEcCCCC-----H--------hH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ-----VSATDVELATLFN-A-IIYTFNTTLH-----P--------AA 527 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~-----it~~Dv~lA~~~~-a-~I~~Fnv~~~-----~--------~~ 527 (673)
-|+-|.-+=+...+..+....+-+-|+++.-|. -+...+.++...+ . +|+..|= .+ + ++
T Consensus 90 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK-~Dl~~~~~~~~~~~~~ei 168 (426)
T TIGR00483 90 VDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINK-MDSVNYDEEEFEAIKKEV 168 (426)
T ss_pred EECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEC-hhccCccHHHHHHHHHHH
Confidence 588886554455555555567778888888772 2333344555544 2 4555553 22 1 23
Q ss_pred HhHHHHcC-----CeEEEec-----hhhHHH--------HHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEE
Q psy4665 528 KTSAEELG-----VTVKQFN-----VIYKLV--------EDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVA 589 (673)
Q Consensus 528 ~~~a~~~~-----V~i~~~~-----iIY~l~--------~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~ia 589 (673)
+++++..+ +.++.-+ -|.++. .++.+.+....+|.....-.=++.|..+|.++ ..++|+
T Consensus 169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~---g~G~vv 245 (426)
T TIGR00483 169 SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSIT---GVGTVP 245 (426)
T ss_pred HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecC---CCeEEE
Confidence 34455555 3333221 122111 13444444444444333334567888999876 346788
Q ss_pred eEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 590 GCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 590 G~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
..+|..|.++.|..+.+...|. ..+|+||+.+.+++.++.+|+.|||.+.+.+. +++.||++-.-
T Consensus 246 ~G~v~~G~i~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 246 VGRVETGVLKPGDKVVFEPAGV---SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEccceeecCCEEEECCCCc---EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 9999999999999999999885 36999999999999999999999999997543 89999998543
No 402
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.82 E-value=7.3e-05 Score=80.72 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=83.1
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccC
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~ 250 (673)
.++|..+.......++++++|+|+.+....-..+..+.+ .+.|+++|+||+|+... +.+...+.+.+.. ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~---k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA---KELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH---HHcC
Confidence 467888888777889999999999874433222222222 27899999999999543 2334443332210 1111
Q ss_pred C-ceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 251 G-DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 251 ~-~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
. ...++++||++|.|++++++.+.+... + .-+..-..+|.|-..|+++|...
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~~~-----~----------~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKARN-----K----------KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHHhC-----C----------CeEEEECCCCCCHHHHHHHHHhh
Confidence 1 125889999999999999999865421 1 12245567899999999999754
No 403
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.82 E-value=0.00026 Score=75.87 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred ceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-----------ChHhhHHHHHHHHH--
Q psy4665 147 GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-----------VMEQTVESIRMARE-- 213 (673)
Q Consensus 147 g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-----------~~~q~~~~l~~~~~-- 213 (673)
..|..+....+.+ ++..+.+||.+|+..++..|...+..++++++|+|.++- ........++.+..
T Consensus 169 ~~T~Gi~~~~f~~-~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 169 VPTTGIQETAFIV-KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred CCccceEEEEEEE-CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 3455555666666 678899999999999999999999999999999999962 22334444444443
Q ss_pred --cCCCEEEEEecCCCCC------------------CcHHHHHHHHHHcCccccc--cCCceeEEEeeccCCCChhhHHH
Q psy4665 214 --AKVPIIVAINKIDKPA------------------ADIERTKNMLLAQGITVED--LGGDIQAVPISALTGTNVDNLTE 271 (673)
Q Consensus 214 --~~iP~IvviNK~Dl~~------------------~~~~~~~~~l~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~ 271 (673)
.+.|+++++||.|+.. .+.+.+...+......... ....+-...++|.+-.++..+++
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~ 327 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFD 327 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHH
Confidence 3689999999999721 1223333333332111111 11234556677888888877777
Q ss_pred HHHHHH
Q psy4665 272 AIERTK 277 (673)
Q Consensus 272 ~i~~~~ 277 (673)
.+.+.+
T Consensus 328 ~v~~~I 333 (342)
T smart00275 328 AVKDII 333 (342)
T ss_pred HHHHHH
Confidence 766554
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.82 E-value=9.1e-05 Score=80.74 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc------Cccc--cc-ccc----------ceeeeEEEEEEEe---------------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN------TSVV--KS-EFG----------GITQHIGAFVVTL--------------- 159 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~------~~~~--~~-~~~----------g~T~~~~~~~v~~--------------- 159 (673)
++..|+++|.+|+||||++..|.. .++. .. ..+ +.-..+..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 456899999999999999998852 2211 00 000 0000111111100
Q ss_pred -cCCeEEEEEeCCCCCcchhhh----h--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC
Q psy4665 160 -KSGEQVTFLDTPGHAAFSNMR----S--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228 (673)
Q Consensus 160 -~~~~~i~liDTpG~~~f~~~~----~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~ 228 (673)
..++.+.|+||||........ . .....+|-++||+|++.|... ....+...+.--+--+++||+|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 025689999999964332211 1 123457889999999876333 333344333333578889999974
No 405
>PRK12288 GTPase RsgA; Reviewed
Probab=97.81 E-value=3.2e-05 Score=82.71 Aligned_cols=58 Identities=19% Similarity=0.415 Sum_probs=38.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc-ccccccc-------ceeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFG-------GITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~-------g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
..++|+|.+|+|||||+|+|++.. ..+++.+ .+|.... .+.++.+ ..|+||||...|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~--l~~l~~~--~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAAR--LYHFPHG--GDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEE--EEEecCC--CEEEECCCCCccc
Confidence 358999999999999999999764 2222221 2343333 3334333 2599999987765
No 406
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.79 E-value=0.0007 Score=74.22 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=117.6
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcCC--eEEEEcCCCC---H---------hHHhHHH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFNA--IIYTFNTTLH---P---------AAKTSAE 532 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~a--~I~~Fnv~~~---~---------~~~~~a~ 532 (673)
|+-|--+=+...+.......+-+-|+.+.-|. -|..-+.++...+- +|+.+| |.+ + +++++++
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvN-K~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLN-KCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEE-ecccCCHHHHHHHHHHHHHHHHH
Confidence 88887665666666665556777788877663 23333555554443 345777 332 1 1223333
Q ss_pred HcC-----CeEEEec---------hhhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCe
Q psy4665 533 ELG-----VTVKQFN---------VIYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGV 597 (673)
Q Consensus 533 ~~~-----V~i~~~~---------iIY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~ 597 (673)
..+ ++++.-+ -.|+-+..+-+.+.+..+ |.....-.-++.|..+|.++ ..++|+..+|.+|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~---g~G~Vv~G~v~~G~ 236 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSIT---GRGTVVTGRVERGI 236 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeC---CceEEEEEEEEeeE
Confidence 333 5555422 223322333344444443 32222334567788999876 34689999999999
Q ss_pred eeeCCeEEEeeC--CEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 598 LKKNALFKLVRR--NEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 598 ~~~~~~~~v~r~--~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
++.|..+.+..- ++ ..+|+||+.+.+++.++.+|+.|||.|.+.+. +++.||+|-.
T Consensus 237 l~~gd~v~i~p~~~~~---~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 237 VKVGEEVEIVGLKDTR---KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred EeCCCEEEEecCCCCc---EEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEec
Confidence 999999998863 33 36899999999999999999999999987532 7999999843
No 407
>KOG1547|consensus
Probab=97.79 E-value=0.00023 Score=69.79 Aligned_cols=112 Identities=23% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccc--------cccceeeeEEEEE-EEecCCe--EEEEEeCCCCCcchhh----
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKS--------EFGGITQHIGAFV-VTLKSGE--QVTFLDTPGHAAFSNM---- 179 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~--------~~~g~T~~~~~~~-v~~~~~~--~i~liDTpG~~~f~~~---- 179 (673)
.++|-++|.+|.|||||+|.|..+.+..+ ..+. |..+.... +-..++. +++++||||+-++...
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pk-T~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPK-TTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccc-eEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 47999999999999999999977643221 1122 22232222 2222444 6788999996443211
Q ss_pred ----------------------hhhcc--ccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEEEEecCCCC
Q psy4665 180 ----------------------RSRGA--HCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIVAINKIDKP 228 (673)
Q Consensus 180 ----------------------~~~~~--~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~ 228 (673)
+.+.+ ...+++++.+.++- ...+-+.+.++.+.+ -+-++-|+-|.|..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccc
Confidence 11222 23467787777763 556667777776654 24567788899974
No 408
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.79 E-value=3e-05 Score=79.14 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=38.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcc-cccc-------ccceeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSV-VKSE-------FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~-------~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
..++++|++|+|||||+|+|.+... ...+ -+.+|.+..... +.++ .++||||...|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~--l~~~---~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFH--FHGG---LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEE--cCCc---EEEeCCCccccC
Confidence 4789999999999999999987532 1111 123555544333 3222 799999976544
No 409
>PRK13796 GTPase YqeH; Provisional
Probab=97.79 E-value=2.8e-05 Score=84.06 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
...+.++|.+|+|||||+|+|+... ...+..||+|.+.... .+.++ ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~--~l~~~--~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI--PLDDG--SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE--EcCCC--cEEEECCCcc
Confidence 3579999999999999999998532 3356778999886543 33333 5799999974
No 410
>KOG1424|consensus
Probab=97.79 E-value=2.2e-05 Score=84.75 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=49.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCC--Ccchhh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH--AAFSNM 179 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~--~~f~~~ 179 (673)
..+|++||+||+||||++|+|.+.. +.++..||.|.++....+. ..+.|.||||. ..|...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLVfPSf~~~ 377 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLVFPSFSPT 377 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCccccCCCch
Confidence 4789999999999999999999976 6778889999988655442 35889999994 566553
No 411
>PLN03126 Elongation factor Tu; Provisional
Probab=97.77 E-value=0.00062 Score=76.03 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=126.4
Q ss_pred eeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecC--CCChhhHHHHhhcCC--eEEEEcCC--CC-H--------
Q psy4665 461 HGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVG--QVSATDVELATLFNA--IIYTFNTT--LH-P-------- 525 (673)
Q Consensus 461 ~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG--~it~~Dv~lA~~~~a--~I~~Fnv~--~~-~-------- 525 (673)
.+++| |+-|-.+=+.+.+..+....+-+-|+.+.-| +-|+.=+.+|...+- +|+..|=- ++ .
T Consensus 145 ~i~li---DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 145 HYAHV---DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred EEEEE---ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHH
Confidence 45554 9999888777888877777788888886655 344444555665553 45666631 11 1
Q ss_pred hHHhHHHHc-----CCeEEEec-------------------hhhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEec
Q psy4665 526 AAKTSAEEL-----GVTVKQFN-------------------VIYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLIT 580 (673)
Q Consensus 526 ~~~~~a~~~-----~V~i~~~~-------------------iIY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~ 580 (673)
+++++.++. ++.++.-+ --|+-+..+.+.+....+ |.....-.=++.|..+|.++
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~ 301 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSIT 301 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeC
Confidence 122222232 34444221 114323334444444332 33333334567889999886
Q ss_pred CCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 581 DGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 581 ~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
..+.|+..+|..|.++.|..+.+...|+. ...+|+||+.++++++++..|+.|||.|.+.+. +++.||+|-.-
T Consensus 302 ---g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~-~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 302 ---GRGTVATGRVERGTVKVGETVDIVGLRET-RSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred ---CceEEEEEEEEcCeEecCCEEEEecCCCc-eEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 34678888999999999999999887642 247999999999999999999999999997543 79999998654
No 412
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.77 E-value=0.00026 Score=75.08 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred ceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-----------ChHhhHHHHHHHHH--
Q psy4665 147 GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-----------VMEQTVESIRMARE-- 213 (673)
Q Consensus 147 g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-----------~~~q~~~~l~~~~~-- 213 (673)
..|..+....+.+ ++..+.+||++|+...+..|...+..++++++|+|.++- ........++.+..
T Consensus 146 ~~T~Gi~~~~f~~-~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 146 VKTTGIVETKFTI-KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred cccCCeeEEEEEe-cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 3445555566666 578899999999999999999999999999999999872 12233344443333
Q ss_pred --cCCCEEEEEecCCCCC-------------------CcHHHHHHHHHHcCccccc-cCCceeEEEeeccCCCChhhHHH
Q psy4665 214 --AKVPIIVAINKIDKPA-------------------ADIERTKNMLLAQGITVED-LGGDIQAVPISALTGTNVDNLTE 271 (673)
Q Consensus 214 --~~iP~IvviNK~Dl~~-------------------~~~~~~~~~l~~~~~~~~~-~~~~~~~v~iSA~~g~gv~~l~~ 271 (673)
.+.|+++++||.|+.. .+.+.+...+......+.. ....+-+..++|..-.++..+++
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence 4789999999999621 1233333333332111111 11234445677777777777777
Q ss_pred HHHHHH
Q psy4665 272 AIERTK 277 (673)
Q Consensus 272 ~i~~~~ 277 (673)
.+.+.+
T Consensus 305 ~v~~~i 310 (317)
T cd00066 305 AVKDII 310 (317)
T ss_pred HHHHHH
Confidence 766554
No 413
>PLN03127 Elongation factor Tu; Provisional
Probab=97.77 E-value=0.00072 Score=75.01 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhh---HHHHhhcCC--eEEEEcCC--CC-HhHHhH--------HH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATD---VELATLFNA--IIYTFNTT--LH-PAAKTS--------AE 532 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~D---v~lA~~~~a--~I~~Fnv~--~~-~~~~~~--------a~ 532 (673)
|+-|--+=+...+..+....+-+-|+++.-|. +..| +.++...+- +|+..|=- ++ .+..+. .+
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 77776555556666655567778888886653 3334 455555554 34556631 11 221111 11
Q ss_pred H-----cCCeEEEechhh-----------HHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEee
Q psy4665 533 E-----LGVTVKQFNVIY-----------KLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSK 595 (673)
Q Consensus 533 ~-----~~V~i~~~~iIY-----------~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~ 595 (673)
. ..+.++.-+-+- +-++.+.+.+.+.+| |.....-.-++.|..+|.++ ..++|+..+|.+
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~---g~GtVvtG~v~~ 285 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQ---GRGTVATGRVEQ 285 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcC---CceEEEEEEEEc
Confidence 1 135664322110 012333444444443 33222334556788999876 356899999999
Q ss_pred CeeeeCCeEEEeeCCEE-EEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 596 GVLKKNALFKLVRRNEV-LFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 596 G~~~~~~~~~v~r~~~~-i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
|.++.|..+.++..+.. -...+|+|++.+++++.++.+|+.||+.|.+.+. +++.||+|-.-
T Consensus 286 G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 286 GTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 99999999999843110 1247999999999999999999999999997543 89999998653
No 414
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.76 E-value=6.5e-05 Score=71.01 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
...+++++|.+|+|||||+|+|.+... .....+++|.+.. .+.. +..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKI--TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEc--CCCEEEEECcCC
Confidence 457889999999999999999997553 3344556665432 2222 346899999994
No 415
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=0.00018 Score=76.38 Aligned_cols=97 Identities=23% Similarity=0.205 Sum_probs=55.6
Q ss_pred CeEEEEEeCCCCCcchhh----hhh--ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNM----RSR--GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~----~~~--~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+..+.|+||||....... ... .....|..+||+|+..|. ...+..+.....--+--+++||+|... ..-..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~-~~G~~ 298 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADA-KGGAA 298 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCC-CccHH
Confidence 456999999996533221 111 123578999999997652 223333333222223677899999853 22233
Q ss_pred HHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 236 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
....... ..|+.+++ +|++++++..+
T Consensus 299 ls~~~~~---------~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 299 LSIAYVI---------GKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred HHHHHHH---------CcCEEEEe--CCCChhhcccC
Confidence 3333332 24667776 78888776543
No 416
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.74 E-value=0.00066 Score=75.17 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec---CCeEEEEEeCCCCCcchhhhhhcccc---C
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK---SGEQVTFLDTPGHAAFSNMRSRGAHC---T 187 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~---~~~~i~liDTpG~~~f~~~~~~~~~~---a 187 (673)
....|.|+|..++|||||+.+|.+.. ...++...++....+... +-.++.+|=..|-..|..+..-.+.. .
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999997543 233455555555444321 11256777666655566665533321 2
Q ss_pred -CeEEEEEECCCC
Q psy4665 188 -DIVVLVVAADDG 199 (673)
Q Consensus 188 -D~~vlVvda~~g 199 (673)
-++|+|+|-+.+
T Consensus 101 ~t~vvIvlDlS~P 113 (472)
T PF05783_consen 101 NTLVVIVLDLSKP 113 (472)
T ss_pred ceEEEEEecCCCh
Confidence 367788898874
No 417
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.73 E-value=0.00014 Score=69.07 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=36.5
Q ss_pred eEEEEEeCCCCCcchhhh--------hhccccCCeEEEEEECCCCChHh--hHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 163 EQVTFLDTPGHAAFSNMR--------SRGAHCTDIVVLVVAADDGVMEQ--TVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~--------~~~~~~aD~~vlVvda~~g~~~q--~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
....|+||||..+-.... .......|.++.++|+....... ......++. -.=++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEecccC
Confidence 357899999964322222 12345689999999987632211 111222332 234679999996
No 418
>KOG0447|consensus
Probab=97.73 E-value=0.00045 Score=74.73 Aligned_cols=136 Identities=14% Similarity=0.229 Sum_probs=88.1
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCccccc------------------c---------------------------
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS------------------E--------------------------- 144 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~------------------~--------------------------- 144 (673)
......|+|+++|...+||||.++.+...+..+. +
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 4556789999999999999999998865331100 0
Q ss_pred ---------ccceeeeEEEEEEEec--CCeEEEEEeCCCC-------------CcchhhhhhccccCCeEEEEEE-CCCC
Q psy4665 145 ---------FGGITQHIGAFVVTLK--SGEQVTFLDTPGH-------------AAFSNMRSRGAHCTDIVVLVVA-ADDG 199 (673)
Q Consensus 145 ---------~~g~T~~~~~~~v~~~--~~~~i~liDTpG~-------------~~f~~~~~~~~~~aD~~vlVvd-a~~g 199 (673)
..|.|.......+... +=.++.|+|.||. +....+...++...+++||++- .+-.
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 1355554444444332 2237889999994 2233455567788999999983 2221
Q ss_pred Ch-HhhHHHHHHHHHcCCCEEEEEecCCCCC---CcHHHHHHHHHHcCcc
Q psy4665 200 VM-EQTVESIRMAREAKVPIIVAINKIDKPA---ADIERTKNMLLAQGIT 245 (673)
Q Consensus 200 ~~-~q~~~~l~~~~~~~iP~IvviNK~Dl~~---~~~~~~~~~l~~~~~~ 245 (673)
.. ...-....++.-.+...|+|++|.|+.. ++++++.+.+.-..+.
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 11 1122344455556888999999999965 5788888887655433
No 419
>PRK01889 GTPase RsgA; Reviewed
Probab=97.71 E-value=0.00028 Score=76.03 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=78.1
Q ss_pred cccCCeEEEEEECCCCChH-hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 184 AHCTDIVVLVVAADDGVME-QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~-q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+..+|.+++|+++...... ...+.+..+...++|.++|+||+|+.+. .+...+.+... ....+++++|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~-------~~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEAL-------APGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHh-------CCCCcEEEEECCC
Confidence 5789999999999866665 4456677778889999999999999753 22223333332 1146899999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
+.|+++|.+++..- ..+.....+|.|-..|++.|...
T Consensus 182 g~gl~~L~~~L~~g------------------~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 182 GEGLDVLAAWLSGG------------------KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CccHHHHHHHhhcC------------------CEEEEECCCCccHHHHHHHHHHh
Confidence 99999998887321 12245567888999999988753
No 420
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00015 Score=77.88 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=71.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccc---ccccceeeeEE------------------EEEEEe----------c
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGITQHIG------------------AFVVTL----------K 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~---~~~~g~T~~~~------------------~~~v~~----------~ 160 (673)
..+..+++++|++|+||||++..|....... ....-+|.+.. ...+.. .
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 3456799999999999999999986432100 00111111110 111100 0
Q ss_pred CCeEEEEEeCCCCCcchhhh---hhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-------EEEEEecCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSNMR---SRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-------IIVAINKIDK 227 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~---~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-------~IvviNK~Dl 227 (673)
.+..+.||||||...+.... ...+ ..++-.+||++++.+....+.-...+....+.| -=+++||.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 35579999999975433221 1222 334556899999986654433333333332332 3567899997
Q ss_pred CCCcHHHHHHHHHHcC
Q psy4665 228 PAADIERTKNMLLAQG 243 (673)
Q Consensus 228 ~~~~~~~~~~~l~~~~ 243 (673)
.. ..-.+...+...+
T Consensus 294 t~-~~G~~l~~~~~~~ 308 (374)
T PRK14722 294 AS-NLGGVLDTVIRYK 308 (374)
T ss_pred CC-CccHHHHHHHHHC
Confidence 53 3444555554443
No 421
>KOG0082|consensus
Probab=97.69 E-value=0.00055 Score=72.24 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=59.1
Q ss_pred ceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC-----------hHhhHHHHHHHHH--
Q psy4665 147 GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-----------MEQTVESIRMARE-- 213 (673)
Q Consensus 147 g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-----------~~q~~~~l~~~~~-- 213 (673)
-.|..+....+.+ ++.++.++|.+|+..-+.-|......++++++|++.++=. +.++..+++.+..
T Consensus 180 ~~T~GI~e~~F~~-k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 180 VPTTGIVEVEFTI-KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred cCcCCeeEEEEEe-CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3455566666776 5688999999999888888888889999999999988611 1233344444433
Q ss_pred --cCCCEEEEEecCCC
Q psy4665 214 --AKVPIIVAINKIDK 227 (673)
Q Consensus 214 --~~iP~IvviNK~Dl 227 (673)
.+.++|+++||.|+
T Consensus 259 ~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDL 274 (354)
T ss_pred ccccCcEEEEeecHHH
Confidence 36799999999998
No 422
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.67 E-value=0.00058 Score=75.82 Aligned_cols=183 Identities=13% Similarity=0.164 Sum_probs=126.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---------CChhhHHHHhhcC--CeEEEEcCCCC------------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---------VSATDVELATLFN--AIIYTFNTTLH------------ 524 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---------it~~Dv~lA~~~~--a~I~~Fnv~~~------------ 524 (673)
-|+-|..+=+.+.+..+....+-+-|+++.-|. -|..=+.+|...+ .+|++.| +++
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vN-KmD~~~~~~~~~~~~ 168 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCIN-KMDDKTVNYSQERYD 168 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEE-ccccccchhhHHHHH
Confidence 588887777777788777777888899998773 4555566666655 3567777 333
Q ss_pred ---HhHHhHHHHcC-----CeEEEec-----hhhHH--------HHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCC
Q psy4665 525 ---PAAKTSAEELG-----VTVKQFN-----VIYKL--------VEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGK 583 (673)
Q Consensus 525 ---~~~~~~a~~~~-----V~i~~~~-----iIY~l--------~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~ 583 (673)
.++++..++.| ++++.-+ -|.+. -..+.+.+....+|.....-.-++.|..+|.++
T Consensus 169 ~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~--- 245 (446)
T PTZ00141 169 EIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIG--- 245 (446)
T ss_pred HHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecC---
Confidence 12223333333 4444433 12110 012333444444444433345667889999876
Q ss_pred CcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 584 KKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 584 ~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
..++|+..+|.+|.++.|..+.+.+.+.. .+|+||+.+++++.++..|+.||+.|.+.+. +++.||+|-.-
T Consensus 246 g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 246 GIGTVPVGRVETGILKPGMVVTFAPSGVT---TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred CceEEEEEEEEcceEecCCEEEEccCCcE---EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 34678899999999999999999998864 5999999999999999999999999998543 89999999653
No 423
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.67 E-value=0.00012 Score=59.96 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=57.8
Q ss_pred cEEeEEEeeCeeeeCCeEEEeeC--CEEEEEEeeecccccccccccccccceeEEEEcC--CCCC-CCCCCEE
Q psy4665 587 PVAGCRCSKGVLKKNALFKLVRR--NEVLFEGKLESMKHLKEEVTSIKKELECGLRLED--PSIE-FEPGDTI 654 (673)
Q Consensus 587 ~iaG~~V~~G~~~~~~~~~v~r~--~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~--~~~~-~~~gD~i 654 (673)
.++.++|.+|+|++|..++++++ ++--...+|.+|..++.++.++.+|..||+.+.. .+ + ++.||+|
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~i~~Gdtl 73 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLN-DAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGC-SCSSTTEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCC-CCcCcCCEE
Confidence 58999999999999999999773 2333558999999999999999999999987765 56 7 8999997
No 424
>PRK12735 elongation factor Tu; Reviewed
Probab=97.66 E-value=0.0014 Score=71.91 Aligned_cols=183 Identities=12% Similarity=0.156 Sum_probs=118.6
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhh---HHHHhhcCC--eEEEEcCCCCH------------hHHhHH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATD---VELATLFNA--IIYTFNTTLHP------------AAKTSA 531 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~D---v~lA~~~~a--~I~~Fnv~~~~------------~~~~~a 531 (673)
|+-|--+=+...+..+....+-+-|+++.-|+ ...+ +.+|...+- +|+..| |.+. +++++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~gi~~iivvvN-K~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFLN-KCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEEE-ecCCcchHHHHHHHHHHHHHHH
Confidence 88887655566666666666777788877664 3333 334444443 334566 3321 122223
Q ss_pred HHcC-----CeEEEechhh-----------HHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEe
Q psy4665 532 EELG-----VTVKQFNVIY-----------KLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCS 594 (673)
Q Consensus 532 ~~~~-----V~i~~~~iIY-----------~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~ 594 (673)
+..+ +.++.-+-.. .=++++.+.+...++ |.....-.-++.|..+|.++ ..++|+..+|.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~---g~Gtvv~G~v~ 235 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSIS---GRGTVVTGRVE 235 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecC---CceEEEEEEEE
Confidence 3322 4444433322 223455555555554 33323334567788999876 34678888999
Q ss_pred eCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 595 KGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 595 ~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
+|.++.|..+.++..+.. ...+|.|++.++++|+++.+|+.||+.|.+.+. +++.||++-.-
T Consensus 236 ~G~i~~gd~v~i~p~~~~-~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 236 RGIVKVGDEVEIVGIKET-QKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred ecEEeCCCEEEEecCCCC-eEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 999999999999985421 236999999999999999999999999987542 89999998553
No 425
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.66 E-value=0.0012 Score=73.29 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=117.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeee----cCCCChhhHHHHhhcCC--eEEEEcCCCC-----H--------hHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYG----VGQVSATDVELATLFNA--IIYTFNTTLH-----P--------AAK 528 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~----vG~it~~Dv~lA~~~~a--~I~~Fnv~~~-----~--------~~~ 528 (673)
-|+-|.-+=....+..+....+-+-|+++. +.+-+...+.++...+. +|+..|= .+ . ++.
T Consensus 89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK-~Dl~~~~~~~~~~~~~~i~ 167 (425)
T PRK12317 89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINK-MDAVNYDEKRYEEVKEEVS 167 (425)
T ss_pred EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEc-cccccccHHHHHHHHHHHH
Confidence 688885332233444444456677777774 44556666777766653 5556663 22 1 222
Q ss_pred hHHHHcC-----CeEEEec-----hhhHHH--------HHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEe
Q psy4665 529 TSAEELG-----VTVKQFN-----VIYKLV--------EDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAG 590 (673)
Q Consensus 529 ~~a~~~~-----V~i~~~~-----iIY~l~--------~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG 590 (673)
+.++..+ +.++.-+ -|-++. ..+.+.|....+|.....-.-++.|..+|.++ ..+.|+.
T Consensus 168 ~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~---g~G~vv~ 244 (425)
T PRK12317 168 KLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSIS---GVGTVPV 244 (425)
T ss_pred HHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeC---CCeEEEE
Confidence 3333444 3343222 121111 12444455544443333334567788999876 3467888
Q ss_pred EEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 591 CRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 591 ~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
.+|..|.++.|..+.+...|.. .+|+||+.+.++|.++..|+.||+.+.+.+. +++.||++-.
T Consensus 245 G~v~~G~v~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~ 308 (425)
T PRK12317 245 GRVETGVLKVGDKVVFMPAGVV---GEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGH 308 (425)
T ss_pred EEEeeccEecCCEEEECCCCCe---EEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecC
Confidence 9999999999999999998864 6999999999999999999999999987653 7999999854
No 426
>PRK00049 elongation factor Tu; Reviewed
Probab=97.66 E-value=0.0016 Score=71.48 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=118.7
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhh---HHHHhhcCC-eE-EEEcCC--C-CHhHH--------hHHH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATD---VELATLFNA-II-YTFNTT--L-HPAAK--------TSAE 532 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~D---v~lA~~~~a-~I-~~Fnv~--~-~~~~~--------~~a~ 532 (673)
|+-|--+=+...+..+....+-+-++++.-| ++..| +.++...+. .| +..|=- + ..+.. +..+
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 8888766666666666666777778887765 34444 445555443 33 455531 1 11111 1111
Q ss_pred H-----cCCeEEEechh-----------hHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEee
Q psy4665 533 E-----LGVTVKQFNVI-----------YKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSK 595 (673)
Q Consensus 533 ~-----~~V~i~~~~iI-----------Y~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~ 595 (673)
. ..+.++.-+-. |+-++.+.+.+.+.++ |.....-.-++.|..+|.++ ..+.|+..+|..
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~---g~G~Vv~G~v~~ 236 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSIS---GRGTVVTGRVER 236 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeC---CceEEEEEEEee
Confidence 1 13455433322 3334455555555444 32222334567888999876 346899999999
Q ss_pred CeeeeCCeEEEeeC--CEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 596 GVLKKNALFKLVRR--NEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 596 G~~~~~~~~~v~r~--~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
|.+++|..+.++.- ++ ..+|+||+.+.++|.++..|+.||+.+.+.+. +++.||++-.
T Consensus 237 G~i~~gd~v~i~p~~~~~---~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 237 GIIKVGEEVEIVGIRDTQ---KTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred eEEecCCEEEEeecCCCc---eEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 99999999988864 33 36999999999999999999999999988643 8999999865
No 427
>KOG1707|consensus
Probab=97.62 E-value=0.00053 Score=75.38 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=96.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+...+-++|..++|||.|++++++..+..++.+.++..+....+... ..+.+.|-|.+-. ....+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 4456788999999999999999999987766554555555544444443 2234555565543 222233323 779999
Q ss_pred EEEEECCCCChHhhH-HHHHHH-HHcCCCEEEEEecCCCCCCcHH---HHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMA-REAKVPIIVAINKIDKPAADIE---RTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~-~~~~iP~IvviNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
.+++|.++.....-. +..+.. ...++|+++|..|+|+.....+ .-.+...+.++ .+.+.+|.++...
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i--------~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL--------PPPIHISSKTLSS 571 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCC--------CCCeeeccCCCCC
Confidence 999999975554432 222221 2268999999999999643211 01122223332 2456677775222
Q ss_pred hhhHHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKNM 279 (673)
Q Consensus 266 v~~l~~~i~~~~~~ 279 (673)
.++|..|......
T Consensus 572 -~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 -NELFIKLATMAQY 584 (625)
T ss_pred -chHHHHHHHhhhC
Confidence 7888888766543
No 428
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.58 E-value=0.0012 Score=76.25 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=119.2
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcCC--eEEEEcCC--CCHh--------HHhHHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFNA--IIYTFNTT--LHPA--------AKTSAEE 533 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~a--~I~~Fnv~--~~~~--------~~~~a~~ 533 (673)
-|+-|--.-+...+..+..-.+-+=|+.+.-|. -|..-+.++...+. +|+..|-- ++++ +++..+.
T Consensus 56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~ 135 (614)
T PRK10512 56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE 135 (614)
T ss_pred EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 588887665666677766666677777776653 23333444444443 45677742 2221 1222222
Q ss_pred cC---CeEEEe-----chhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEE
Q psy4665 534 LG---VTVKQF-----NVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFK 605 (673)
Q Consensus 534 ~~---V~i~~~-----~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~ 605 (673)
.+ +.|+.- .-|..|++.+.++. ++.....-.-+..|-.+|.++ ..++|+..+|.+|+++.|..+.
T Consensus 136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~----~~~~~~~~~~rl~Id~vf~v~---G~GtVvtGtv~sG~l~~Gd~v~ 208 (614)
T PRK10512 136 YGFAEAKLFVTAATEGRGIDALREHLLQLP----EREHAAQHRFRLAIDRAFTVK---GAGLVVTGTALSGEVKVGDTLW 208 (614)
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhh----ccccCcCCCceEEEEEEeccC---CCeEEEEEEEecceEecCCEEE
Confidence 23 455533 34556666665443 332222223456788899875 3578999999999999999999
Q ss_pred EeeCCEEEEEEeeecccccccccccccccceeEEEEcC-CCC-CCCCCCEEEE
Q psy4665 606 LVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLED-PSI-EFEPGDTIVC 656 (673)
Q Consensus 606 v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~-~~~-~~~~gD~i~~ 656 (673)
+...+.. .+|.||+.++++|+++.+|+.||+.+.+ .+. +++.||++-.
T Consensus 209 i~p~~~~---~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~ 258 (614)
T PRK10512 209 LTGVNKP---MRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLA 258 (614)
T ss_pred EcCCCCc---EEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeC
Confidence 9887754 4999999999999999999999999985 322 8999999853
No 429
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.55 E-value=0.00076 Score=56.73 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=57.1
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec--ccccceeccCccccccCcEEEeeeCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKIN 404 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~ 404 (673)
.+.|.+++.....|+++.++|.+|++++|+.+..-+. .+++++|. ..++++|.||+. |++ .+++.
T Consensus 2 ~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~e------cgi--~l~~~ 73 (84)
T cd03692 2 EAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYE------CGI--TLENF 73 (84)
T ss_pred EEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCE------EEE--EEeCc
Confidence 3566777766677899999999999999999855432 36888887 788999999999 884 23444
Q ss_pred CCCCCCCeE
Q psy4665 405 PFCPSGDVD 413 (673)
Q Consensus 405 ~~~~~Gd~l 413 (673)
..+.+||++
T Consensus 74 ~d~~~Gdvi 82 (84)
T cd03692 74 NDIKVGDII 82 (84)
T ss_pred ccCCCCCEE
Confidence 456689987
No 430
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.52 E-value=0.00021 Score=70.32 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCCcchhhh----h--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMR----S--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~----~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+..+.|+||||...+.... . ......+-++||+|++.+... ...........++. =++++|.|... ..-.+
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~-~lIlTKlDet~-~~G~~ 159 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGID-GLILTKLDETA-RLGAL 159 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTC-EEEEESTTSSS-TTHHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCc-eEEEEeecCCC-Ccccc
Confidence 4569999999965443221 1 122357889999999976432 22444444444555 44599999854 33445
Q ss_pred HHHHHHcC
Q psy4665 236 KNMLLAQG 243 (673)
Q Consensus 236 ~~~l~~~~ 243 (673)
...+...+
T Consensus 160 l~~~~~~~ 167 (196)
T PF00448_consen 160 LSLAYESG 167 (196)
T ss_dssp HHHHHHHT
T ss_pred eeHHHHhC
Confidence 55554443
No 431
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.51 E-value=0.0024 Score=73.41 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=124.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCC--ChhhHHHHhhcCC--eEEEEcCC--CCHh--------HHhHHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQV--SATDVELATLFNA--IIYTFNTT--LHPA--------AKTSAEE 533 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~i--t~~Dv~lA~~~~a--~I~~Fnv~--~~~~--------~~~~a~~ 533 (673)
-|+-|.-.=+...+..+.+-.+-+-|+++.-|.. |..-+..+...+. +|+.+|=- ++++ +++.++.
T Consensus 55 iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~ 134 (581)
T TIGR00475 55 IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS 134 (581)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4888876666666777777777778888877743 2223334444443 67777721 1222 2233333
Q ss_pred c----CCeEEEec-----hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeE
Q psy4665 534 L----GVTVKQFN-----VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALF 604 (673)
Q Consensus 534 ~----~V~i~~~~-----iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~ 604 (673)
. +++++.-+ -|-+|++.+.+++...-++. ..-.-++.|-.+|.++ ..++|+..+|.+|+++.|..+
T Consensus 135 ~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~--~~~p~r~~Id~~f~v~---G~GtVv~G~v~~G~i~~Gd~l 209 (581)
T TIGR00475 135 YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR--IQKPLRMAIDRAFKVK---GAGTVVTGTAFSGEVKVGDNL 209 (581)
T ss_pred hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC--cCCCcEEEEEEEEecC---CcEEEEEEEEecceEecCCEE
Confidence 2 46666554 56677777777776543321 2234556788899876 356899999999999999999
Q ss_pred EEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEE
Q psy4665 605 KLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTI 654 (673)
Q Consensus 605 ~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i 654 (673)
.+...|.. .+|.||+.+.++|+++.+|+.|||.+.+.+. +++.|.++
T Consensus 210 ~i~P~~~~---~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~ 257 (581)
T TIGR00475 210 RLLPINHE---VRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLI 257 (581)
T ss_pred EECCCCce---EEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEE
Confidence 99998864 5999999999999999999999999987553 68889444
No 432
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.51 E-value=0.0007 Score=58.97 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCCeEEEEEEEEeec--------CCcEEEEEEeeecEEeeCCEEEe--C------------CcceEEEEec--ccccce
Q psy4665 327 YGGPVEAMIVESKFDT--------HRGKLATALVQRGTLKKGAIVVA--G------------QAWAKVRSIS--RKTLIN 382 (673)
Q Consensus 327 ~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~G~Lk~g~~v~~--g------------~~~~kvr~i~--~~~v~~ 382 (673)
.+.|+.++|.+++... .+|.|+.+.+.+|.|+.||.|-+ | +...+|.+|+ ++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4567889999998887 89999999999999999998832 2 1234556666 889999
Q ss_pred eccCccccccCcEEEeeeCCCCCCCCCCCeE
Q psy4665 383 TALGTVQRTSGTVKISLGFKINPFCPSGDVD 413 (673)
Q Consensus 383 a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l 413 (673)
|.||.. |++-++|+ |++..+|.+
T Consensus 82 a~pGgl------iGvgT~Ld--psltk~D~l 104 (113)
T cd03688 82 AVPGGL------IGVGTKLD--PTLTKADRL 104 (113)
T ss_pred EeCCCe------EEEccccC--cccccccee
Confidence 999999 88545554 333344443
No 433
>CHL00071 tufA elongation factor Tu
Probab=97.50 E-value=0.0026 Score=70.03 Aligned_cols=182 Identities=12% Similarity=0.157 Sum_probs=116.7
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhh---HHHHhhcCC--eEEEEcCC--CC-H--------hHHhHHH
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATD---VELATLFNA--IIYTFNTT--LH-P--------AAKTSAE 532 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~D---v~lA~~~~a--~I~~Fnv~--~~-~--------~~~~~a~ 532 (673)
|+-|--+-+...+..+....+-+-|+.+.-| +...| +.++...+- +|+..|=- ++ . ++.+..+
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 8888666666666666666777778887655 34444 344444443 45666631 11 1 1222222
Q ss_pred HcC-----CeEEEech-------------------hhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCc
Q psy4665 533 ELG-----VTVKQFNV-------------------IYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVP 587 (673)
Q Consensus 533 ~~~-----V~i~~~~i-------------------IY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~ 587 (673)
..+ +.++.-+- =|+-+..+.+.+...++ |.....-.=++.|..+|... ..+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~---g~G~ 236 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSIT---GRGT 236 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeC---CCeE
Confidence 222 44543211 13333444444444443 32222334567788999876 3467
Q ss_pred EEeEEEeeCeeeeCCeEEEee--CCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 588 VAGCRCSKGVLKKNALFKLVR--RNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 588 iaG~~V~~G~~~~~~~~~v~r--~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
|+..+|.+|.++.|..+.++. ++. ..+|+||+.++++++++.+|+.|||.+.+.+. +++.||+|-.-
T Consensus 237 Vv~G~V~sG~l~~Gd~v~i~p~~~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 237 VATGRIERGTVKVGDTVEIVGLRETK---TTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEEEEecCEEeeCCEEEEeeCCCCc---EEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 888999999999999998875 342 36999999999999999999999999987543 79999999544
No 434
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.46 E-value=0.0039 Score=68.61 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=116.3
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---CChhhHHHHhhcC--CeEEEEcCCCCH-----------hHHhHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---VSATDVELATLFN--AIIYTFNTTLHP-----------AAKTSA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---it~~Dv~lA~~~~--a~I~~Fnv~~~~-----------~~~~~a 531 (673)
-|+-|..+=+...+.....-.+-+-|+++.-|. -|...+..+...+ .+|+.+|= .+. .++.++
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK-~Dl~~~~~~~~~~~~i~~~l 168 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK-IDLVSKERALENYEQIKEFV 168 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe-eccccchhHHHHHHHHHHHh
Confidence 488898776666666665556777888887654 2333344454443 36777763 221 111222
Q ss_pred HH---cCCeEEEec-----hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecC-C----CCcCcEEeEEEeeCee
Q psy4665 532 EE---LGVTVKQFN-----VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITD-G----KKKVPVAGCRCSKGVL 598 (673)
Q Consensus 532 ~~---~~V~i~~~~-----iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~-~----~~~~~iaG~~V~~G~~ 598 (673)
+. .++.++.-+ -|-.|++.+.+.+. +|.......-++.|..+|.+.. | +..+.|+..+|..|.+
T Consensus 169 ~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~---~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l 245 (411)
T PRK04000 169 KGTVAENAPIIPVSALHKVNIDALIEAIEEEIP---TPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVL 245 (411)
T ss_pred ccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC---CCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEE
Confidence 21 145555433 34555555444332 1222122234677888897752 1 1235577789999999
Q ss_pred eeCCeEEEeeCCE------EEE---EEeeecccccccccccccccceeEEEEc---CCC-CCCCCCCEEE
Q psy4665 599 KKNALFKLVRRNE------VLF---EGKLESMKHLKEEVTSIKKELECGLRLE---DPS-IEFEPGDTIV 655 (673)
Q Consensus 599 ~~~~~~~v~r~~~------~i~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~---~~~-~~~~~gD~i~ 655 (673)
++|..+.+...++ ..| ..+|.||+.+.+++.++.+|+.+||.+. +-+ .++..||++-
T Consensus 246 ~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 246 KVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred ecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 9999999998764 122 3689999999999999999999999985 211 1788899874
No 435
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.46 E-value=0.00022 Score=74.56 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=39.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcccc-c-------cccceeeeEEEEEEEecCCeEEEEEeCCCCCcch
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVK-S-------EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~-------~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~ 177 (673)
...++++|++|+|||||+|+|++..... + .-+.+|.+. ..+.+..+ ..++||||...|.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~--~~~~~~~~--~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHR--ELFPLPGG--GLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceE--EEEEcCCC--CEEEECCCCCccC
Confidence 3689999999999999999998754221 1 112244443 23444222 3699999997764
No 436
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.44 E-value=0.00038 Score=65.31 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID 226 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~D 226 (673)
+..+.|+||||..... ...+..||.+++|...+-+ +-..+.....+...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAG----DDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCch----hHHHHhhhhHhhhcCEEEEeCCC
Confidence 4569999999964222 2377889999999877722 22222222344556689999998
No 437
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00046 Score=73.81 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccc
Q psy4665 545 YKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKH 623 (673)
Q Consensus 545 Y~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~ 623 (673)
-+=||++++.+..++. +...+.-..+.-|=-.|+++ ..++|.=-.|.+|.++.|.++.+..-|+.+ +|.||+.
T Consensus 147 g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVK---GvGTVVtGtv~sG~V~v~D~L~l~p~~k~v---~VRsIq~ 220 (447)
T COG3276 147 GRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVK---GVGTVVTGTVLSGEVKVGDKLYLSPINKEV---RVRSIQA 220 (447)
T ss_pred CCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEec---cccEEEEeEEeeeeEEECCEEEEecCCCeE---EEEeeee
Confidence 3446777777776663 45556666777778889886 467888888999999999999999988877 9999999
Q ss_pred cccccccccccceeEEEEcCCCC-CCCCCCEEEEE
Q psy4665 624 LKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVCF 657 (673)
Q Consensus 624 ~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~~ 657 (673)
+..+++++.+|+.||+.|.+-+. +++-||.+..=
T Consensus 221 ~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~ 255 (447)
T COG3276 221 HDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKP 255 (447)
T ss_pred cCcchhhccccceeeeecCCCCHHHhhcccEeccC
Confidence 99999999999999999998633 78888877543
No 438
>PRK00098 GTPase RsgA; Reviewed
Probab=97.42 E-value=0.00021 Score=75.22 Aligned_cols=58 Identities=31% Similarity=0.496 Sum_probs=37.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccc-ccccc-------ceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFG-------GITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~-------g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
...++++|++|+|||||+|+|++.... ..+.+ .+|... ..+.++++ ..++||||...|
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~--~~~~~~~~--~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHV--ELYDLPGG--GLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccE--EEEEcCCC--cEEEECCCcCcc
Confidence 357999999999999999999875422 22111 234333 23333223 479999998654
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.36 E-value=0.0011 Score=63.78 Aligned_cols=66 Identities=23% Similarity=0.187 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCCcchhhhh----h--ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRS----R--GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~----~--~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
+..+.++||||...+..... . .....|.+++|+|+..+... ...........+ ..-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 55689999999754322111 1 12348999999999654322 222333333445 3567779999864
No 440
>KOG2485|consensus
Probab=97.33 E-value=0.00027 Score=72.23 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=45.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC------ccccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT------SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~------~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
..++|-++|-||+|||||+|++... ...++..+|+|+.+... +.+.+...+.++||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCc
Confidence 4578999999999999999998643 34566679999988653 33335567999999994
No 441
>PRK13796 GTPase YqeH; Provisional
Probab=97.31 E-value=0.00079 Score=72.86 Aligned_cols=123 Identities=27% Similarity=0.343 Sum_probs=77.1
Q ss_pred CcchhhhhhccccCC-eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccC
Q psy4665 174 AAFSNMRSRGAHCTD-IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD-~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~ 250 (673)
++|..... .+..+| .+++|+|+.+.... ....+.... .+.|+++|+||+|+... +.++..+.+.... ...+
T Consensus 57 ~~~~~~l~-~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~---k~~g 130 (365)
T PRK13796 57 DDFLKLLN-GIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA---KELG 130 (365)
T ss_pred HHHHHHHH-hhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH---HhcC
Confidence 35666544 555555 99999999884422 233333322 37899999999999642 2333333332210 0111
Q ss_pred C-ceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 251 G-DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 251 ~-~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
- ...++.+||+++.|++++++.+.+... + .-+.+-..+|.|-..|++.|...
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~~-----~----------~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYRE-----G----------RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhcC-----C----------CeEEEEcCCCCcHHHHHHHHHhh
Confidence 1 125889999999999999999865421 1 01244567899999999999753
No 442
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.0022 Score=63.34 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=46.4
Q ss_pred EEEEeC-CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcC-CCEEEEEecCCCC
Q psy4665 165 VTFLDT-PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK-VPIIVAINKIDKP 228 (673)
Q Consensus 165 i~liDT-pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~-iP~IvviNK~Dl~ 228 (673)
+.++|| +|.+.|..- -...+|.++.|+|++........+.-+...+.+ .++.+++||+|..
T Consensus 136 ~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 677777 466666543 346799999999999765555666667777888 7899999999964
No 443
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.24 E-value=0.00033 Score=77.07 Aligned_cols=113 Identities=24% Similarity=0.198 Sum_probs=62.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------ccc--c--ccc-------------cceeeeEEEEE----------EEe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SVV--K--SEF-------------GGITQHIGAFV----------VTL 159 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~~--~--~~~-------------~g~T~~~~~~~----------v~~ 159 (673)
.++.+|.++|.+|+||||++..|... ++. . ... .++........ +..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 45778999999999999999887431 110 0 000 01110000000 000
Q ss_pred cCCeEEEEEeCCCCCcchhhh------hhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCC
Q psy4665 160 KSGEQVTFLDTPGHAAFSNMR------SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKP 228 (673)
Q Consensus 160 ~~~~~i~liDTpG~~~f~~~~------~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~ 228 (673)
.....+.++||||........ ...+..+|.+++|+|++.+. ...+..+.... .++ .-+++||+|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 023468999999965443221 12345689999999998762 22333332221 244 46788999974
No 444
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.24 E-value=0.0026 Score=67.38 Aligned_cols=126 Identities=20% Similarity=0.204 Sum_probs=69.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------cccccccceee------eEEEEEEEecC-------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------VVKSEFGGITQ------HIGAFVVTLKS------------------- 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------~~~~~~~g~T~------~~~~~~v~~~~------------------- 161 (673)
++.|...+.|.-|||||||+|+|+... +...+.+.+.. ......+++.+
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 467899999999999999999997542 11111110100 00001111111
Q ss_pred --------CeEEEEEeCCCCCcchhhhhh--------ccccCCeEEEEEECCCCChHhh--HHHHHHHHHcCCCEEEEEe
Q psy4665 162 --------GEQVTFLDTPGHAAFSNMRSR--------GAHCTDIVVLVVAADDGVMEQT--VESIRMAREAKVPIIVAIN 223 (673)
Q Consensus 162 --------~~~i~liDTpG~~~f~~~~~~--------~~~~aD~~vlVvda~~g~~~q~--~~~l~~~~~~~iP~IvviN 223 (673)
.....++.|.|..+-...... ..-..|.++-|+|+........ .....++ ...=++++|
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi---~~AD~Ivln 158 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV---GYADRILLT 158 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH---HhCCEEEEe
Confidence 134678999997654333321 1123588999999986332111 1111222 234589999
Q ss_pred cCCCCCCcHHHHHHHHHHc
Q psy4665 224 KIDKPAADIERTKNMLLAQ 242 (673)
Q Consensus 224 K~Dl~~~~~~~~~~~l~~~ 242 (673)
|+|+.+. .+++.+.++..
T Consensus 159 K~Dl~~~-~~~~~~~l~~l 176 (318)
T PRK11537 159 KTDVAGE-AEKLRERLARI 176 (318)
T ss_pred ccccCCH-HHHHHHHHHHh
Confidence 9999764 34555555554
No 445
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.19 E-value=0.012 Score=65.53 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=119.1
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC---CCChhhHHHHhhcC--CeEEEEcCC--CCHh-HH---hHHHH---
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG---QVSATDVELATLFN--AIIYTFNTT--LHPA-AK---TSAEE--- 533 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG---~it~~Dv~lA~~~~--a~I~~Fnv~--~~~~-~~---~~a~~--- 533 (673)
-|+=|--.=+...+..+..-.+-+=|+.+.=| +-|..-+.+|...+ .+|+..|=- ++.+ .. +..+.
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~ 201 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK 201 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 67778766667777777766667778888644 33555555565544 357777742 1111 11 11111
Q ss_pred ----cCCeEEEechhhH-HHHHHHHHHhccCCce-eEEEEeEEEEEeeeeEecC-CC----CcCcEEeEEEeeCeeeeCC
Q psy4665 534 ----LGVTVKQFNVIYK-LVEDVKEEINAMLPHT-YAEEVLGEANVLQMFLITD-GK----KKVPVAGCRCSKGVLKKNA 602 (673)
Q Consensus 534 ----~~V~i~~~~iIY~-l~~~~~~~~~~~~~~~-~~~~~~g~a~v~~~f~~~~-~~----~~~~iaG~~V~~G~~~~~~ 602 (673)
.++.|+.-+-... =++.+.++|.+.+++. ....-.-++.|...|.+.. |. ..++|+..+|.+|.+++|.
T Consensus 202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd 281 (460)
T PTZ00327 202 GTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGD 281 (460)
T ss_pred hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCC
Confidence 3555655442221 1345555555445532 2222234466778887752 11 1467999999999999999
Q ss_pred eEEEeeCC-------EEEE---EEeeecccccccccccccccceeEEEEc---CCC-CCCCCCCEEEE
Q psy4665 603 LFKLVRRN-------EVLF---EGKLESMKHLKEEVTSIKKELECGLRLE---DPS-IEFEPGDTIVC 656 (673)
Q Consensus 603 ~~~v~r~~-------~~i~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~---~~~-~~~~~gD~i~~ 656 (673)
.+.+...+ +..+ ..+|.||+.+.++|+++.+|+.|||.+. +.+ .+++.||++-.
T Consensus 282 ~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~ 349 (460)
T PTZ00327 282 EIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGY 349 (460)
T ss_pred EEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEc
Confidence 99998743 3322 3699999999999999999999999886 222 17888998754
No 446
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0033 Score=69.98 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=69.3
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcC--------ccc--cccc-c----------ceeeeEEEEEEEe----------c
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNT--------SVV--KSEF-G----------GITQHIGAFVVTL----------K 160 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~--------~~~--~~~~-~----------g~T~~~~~~~v~~----------~ 160 (673)
..+..+++|+|++|+||||++..|... ++. ..+. + +-...+....... .
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 345679999999999999999888532 110 1000 0 0000010111100 0
Q ss_pred CCeEEEEEeCCCCCcchhhhh------hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRS------RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER 234 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~------~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~ 234 (673)
.++.+.||||||......... .... ....++|+++..+. .+..+.++.+... .+.-+++||+|... ..-.
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~-~Dl~eii~~f~~~-~~~gvILTKlDEt~-~lG~ 502 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF-SDLDEVVRRFAHA-KPQGVVLTKLDETG-RFGS 502 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh-hHHHHHHHHHHhh-CCeEEEEecCcCcc-chhH
Confidence 246799999999644332211 1111 23567888887542 2233444444433 46789999999843 3445
Q ss_pred HHHHHHHcC
Q psy4665 235 TKNMLLAQG 243 (673)
Q Consensus 235 ~~~~l~~~~ 243 (673)
....+...+
T Consensus 503 aLsv~~~~~ 511 (559)
T PRK12727 503 ALSVVVDHQ 511 (559)
T ss_pred HHHHHHHhC
Confidence 555555543
No 447
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.14 E-value=0.0069 Score=67.89 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=111.1
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC--CCChhhHHHHhhcC--CeEEEEcCC--C--CHh----HHh----HH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG--QVSATDVELATLFN--AIIYTFNTT--L--HPA----AKT----SA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG--~it~~Dv~lA~~~~--a~I~~Fnv~--~--~~~----~~~----~a 531 (673)
-|+-|--.=+...+..+....+-+-|+.+.-| +-|.....++...+ .+|+..|=- + +.+ +++ +.
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~ 191 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFA 191 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHH
Confidence 67777543334455555556677888887655 45666666776654 356666631 1 111 111 12
Q ss_pred HHc----CCeEEEec-----h---------hhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEE
Q psy4665 532 EEL----GVTVKQFN-----V---------IYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRC 593 (673)
Q Consensus 532 ~~~----~V~i~~~~-----i---------IY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V 593 (673)
++. .+.++.-+ - .|+- ..+.+.+...-+|.....-.-++.|..++...- ....++-+|
T Consensus 192 ~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G-~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~---~~~g~~G~V 267 (474)
T PRK05124 192 EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSG-PTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNL---DFRGYAGTL 267 (474)
T ss_pred HhcCCCCCceEEEEEeecCCCcccccccccccch-hhHHHHHhhcCCCCCCCCCCceeeEEEEEecCC---cccceEEEE
Confidence 222 24444332 1 2221 123334444333333233334455666654320 111245689
Q ss_pred eeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEE
Q psy4665 594 SKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVC 656 (673)
Q Consensus 594 ~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~ 656 (673)
.+|.++.|..+.+...|+. .+|+||+.++.+|+++..|+.|+|.+.+.+ +++.||+|-.
T Consensus 268 ~sG~l~~Gd~v~i~P~~~~---~~VksI~~~~~~v~~A~aG~~V~l~L~~~~-~i~rG~VL~~ 326 (474)
T PRK05124 268 ASGVVKVGDRVKVLPSGKE---SNVARIVTFDGDLEEAFAGEAITLVLEDEI-DISRGDLLVA 326 (474)
T ss_pred EeEEEecCCEEEEecCCce---EEEEEEEEcCccccCcCCCCEEEEEeCCcc-ccCCccEEEC
Confidence 9999999999999998864 699999999999999999999999999866 9999999865
No 448
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.14 E-value=0.00071 Score=83.86 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccc--cceeeeE-EEEEEEecCCeEEEEEeCCCCC--------cchhhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--GGITQHI-GAFVVTLKSGEQVTFLDTPGHA--------AFSNMRS 181 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~--~g~T~~~-~~~~v~~~~~~~i~liDTpG~~--------~f~~~~~ 181 (673)
...|=-.++|++|+|||||+.+- +-.+...+. ...+... ....+.|+-..+-.++||+|.. .....+.
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHH
Confidence 35678899999999999999986 323322110 0000000 1122333333467799999931 1112221
Q ss_pred ---------hccccCCeEEEEEECCCCC---hHhhHHHH-------HHHH---HcCCCEEEEEecCCCC
Q psy4665 182 ---------RGAHCTDIVVLVVAADDGV---MEQTVESI-------RMAR---EAKVPIIVAINKIDKP 228 (673)
Q Consensus 182 ---------~~~~~aD~~vlVvda~~g~---~~q~~~~l-------~~~~---~~~iP~IvviNK~Dl~ 228 (673)
|.-+-.+++|+++|+.+=. ..+...+. ..+. ...+|+.+++||||+.
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 2235689999999998622 12111111 1121 2468999999999985
No 449
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.12 E-value=0.014 Score=64.13 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=111.6
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcC--CeEEEEcCC--C--CHhH----Hh----HH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFN--AIIYTFNTT--L--HPAA----KT----SA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~--a~I~~Fnv~--~--~~~~----~~----~a 531 (673)
-|+-|.-+=+...+..+....+-+-|+++.-|. -|..-..++...+ .+|+..|=- + +.+. ++ +.
T Consensus 85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~ 164 (406)
T TIGR02034 85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFA 164 (406)
T ss_pred EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHH
Confidence 688886555555666666677888899987663 3444456666644 356676631 1 1211 11 12
Q ss_pred HHcC---CeEEEec-----hhhHH--------HHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEee
Q psy4665 532 EELG---VTVKQFN-----VIYKL--------VEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSK 595 (673)
Q Consensus 532 ~~~~---V~i~~~~-----iIY~l--------~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~ 595 (673)
+..+ +.++.-+ -|..+ -..+.+.|...-+|.....-.-++.|..+|..+. ...-+|.+|.+
T Consensus 165 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~---~~~g~~G~v~~ 241 (406)
T TIGR02034 165 EQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNL---DFRGYAGTIAS 241 (406)
T ss_pred HHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCC---CcEEEEEEEec
Confidence 2223 2343322 12111 0113334433333332222223444556665431 11225678999
Q ss_pred CeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEE
Q psy4665 596 GVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCF 657 (673)
Q Consensus 596 G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~ 657 (673)
|.++.|..+.+...|.. .+|+||+.++.+|+++..|+.+|+.+.+.+ +++.||++-.-
T Consensus 242 G~l~~gd~v~i~P~~~~---~~VksI~~~~~~~~~a~~G~~v~l~l~~~~-~i~rG~vl~~~ 299 (406)
T TIGR02034 242 GSVHVGDEVVVLPSGRS---SRVARIVTFDGDLEQARAGQAVTLTLDDEI-DISRGDLLAAA 299 (406)
T ss_pred ceeecCCEEEEeCCCcE---EEEEEEEECCcccCEeCCCCEEEEEECCcc-ccCCccEEEcC
Confidence 99999999999998754 699999999999999999999999999866 99999998543
No 450
>KOG2484|consensus
Probab=97.11 E-value=0.00029 Score=74.09 Aligned_cols=57 Identities=26% Similarity=0.508 Sum_probs=45.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
++..+|+|+|.||+||||++|+|..... .++..+|+|..+.. +.+ +..+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe--V~L--dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE--VKL--DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh--eec--cCCceeccCCce
Confidence 4567899999999999999999988775 55667888876643 333 457999999995
No 451
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.07 E-value=0.0051 Score=50.75 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcceEEEEec--ccccceeccCccccccCcEEEeeeCCCCCC
Q psy4665 329 GPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKINPF 406 (673)
Q Consensus 329 ~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~ 406 (673)
.|....|+..+.-.... +..+.|..|++++|..+ -|..-++|++|. ++++++|.+|+- |++. ++....
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-~G~~iG~I~sIe~~~k~v~~A~~G~e------Vai~--Ieg~~~ 72 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-DGRKIGRIKSIEDNGKNVDEAKKGDE------VAIS--IEGPTQ 72 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-CSSCEEEEEEEEETTEEESEEETT-E------EEEE--EET--T
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-CCEEEEEEEEeEECCcCccccCCCCE------EEEE--EeCCcc
Confidence 35566677777767777 66669999999999999 777789999998 889999999999 8832 222235
Q ss_pred CCCCCeEe
Q psy4665 407 CPSGDVDG 414 (673)
Q Consensus 407 ~~~Gd~l~ 414 (673)
+..||+|.
T Consensus 73 i~eGDiLy 80 (81)
T PF14578_consen 73 IKEGDILY 80 (81)
T ss_dssp B-TT-EEE
T ss_pred CCCCCEEe
Confidence 66899885
No 452
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0013 Score=70.51 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------c--cccc-cc--ce--------eeeEEEEEEEe-----------c--
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------V--VKSE-FG--GI--------TQHIGAFVVTL-----------K-- 160 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------~--~~~~-~~--g~--------T~~~~~~~v~~-----------~-- 160 (673)
.++.+|+++|++|+||||++..|...- + ...+ .+ .. ...+....... .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 356799999999999999999985311 1 0000 00 00 00000000000 0
Q ss_pred CCeEEEEEeCCCCCcchhh----hhhc--cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNM----RSRG--AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER 234 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~----~~~~--~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~ 234 (673)
.+..+.|+||||....... ..+. ....+-++||+|++.+. ....+.++.....++ -=++++|+|-.. ..-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 1357899999996443221 1111 23457789999987432 122344444443332 456789999854 3334
Q ss_pred HHHHHHHc
Q psy4665 235 TKNMLLAQ 242 (673)
Q Consensus 235 ~~~~l~~~ 242 (673)
+...+...
T Consensus 396 iLni~~~~ 403 (436)
T PRK11889 396 LLKIPAVS 403 (436)
T ss_pred HHHHHHHH
Confidence 44444443
No 453
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0032 Score=67.09 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccc
Q psy4665 544 IYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKH 623 (673)
Q Consensus 544 IY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~ 623 (673)
-+.|++.+- ..-+|.......=+..|++++.++. -.....| +|..|.+++|.++.+...+. .|+++|+..
T Consensus 211 GpTLleaLd----~~~~p~~~~d~Plr~pI~~v~~i~~--~gtv~vG-rVEsG~i~~g~~v~~~p~~~---~~evksie~ 280 (428)
T COG5256 211 GPTLLEALD----QLEPPERPLDKPLRLPIQDVYSISG--IGTVPVG-RVESGVIKPGQKVTFMPAGV---VGEVKSIEM 280 (428)
T ss_pred CChHHHHHh----ccCCCCCCCCCCeEeEeeeEEEecC--CceEEEE-EEeeeeeccCCEEEEecCcc---eEEEeeeee
Confidence 566777555 3334444455566788999999772 1224567 99999999999999999884 489999999
Q ss_pred cccccccccccceeEEEEcCCC-CCCCCCCEEEEEEEE
Q psy4665 624 LKEEVTSIKKELECGLRLEDPS-IEFEPGDTIVCFVKN 660 (673)
Q Consensus 624 ~k~~v~~~~~g~ecgi~~~~~~-~~~~~gD~i~~~~~~ 660 (673)
+++++..+..|+.||+.+.+-. .|++.||++-..++.
T Consensus 281 ~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 281 HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred cccccccCCCCCeEEEEecCCchhccCCccEeccCCCC
Confidence 9999999999999999999733 289999999876543
No 454
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.95 E-value=0.024 Score=62.42 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=112.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---CChhhHHHHhhcC--CeEEEEcCC-C-CHh--------HHhHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---VSATDVELATLFN--AIIYTFNTT-L-HPA--------AKTSAE 532 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---it~~Dv~lA~~~~--a~I~~Fnv~-~-~~~--------~~~~a~ 532 (673)
-|+-|.-+=+...+.......+-+=|+++.-|. -|..-+.++...+ .+|+..|=- . +.+ +.++.+
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~ 164 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK 164 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh
Confidence 688887666666666665556777788887653 2233344444443 256666631 1 111 111122
Q ss_pred Hc---CCeEEEec-----hhhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecC-CC----CcCcEEeEEEeeCee
Q psy4665 533 EL---GVTVKQFN-----VIYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITD-GK----KKVPVAGCRCSKGVL 598 (673)
Q Consensus 533 ~~---~V~i~~~~-----iIY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~-~~----~~~~iaG~~V~~G~~ 598 (673)
.. ++.++.-+ -|..|++. +...++ |.......-++.|..+|.+.. |. ..+.|+..+|.+|.+
T Consensus 165 ~~~~~~~~ii~vSA~~g~gi~~L~e~----L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i 240 (406)
T TIGR03680 165 GTVAENAPIIPVSALHNANIDALLEA----IEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKL 240 (406)
T ss_pred hcccCCCeEEEEECCCCCChHHHHHH----HHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEE
Confidence 21 44554332 44445544 444333 221122234567888887752 11 134688889999999
Q ss_pred eeCCeEEEeeCCEE------EE---EEeeecccccccccccccccceeEEEEc---CCC-CCCCCCCEEEE
Q psy4665 599 KKNALFKLVRRNEV------LF---EGKLESMKHLKEEVTSIKKELECGLRLE---DPS-IEFEPGDTIVC 656 (673)
Q Consensus 599 ~~~~~~~v~r~~~~------i~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~---~~~-~~~~~gD~i~~ 656 (673)
++|..+.+...++. .+ ..+|.||+.+.+++.++.+|+.+||.++ +-+ .|+..||++-.
T Consensus 241 ~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~ 311 (406)
T TIGR03680 241 KVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGK 311 (406)
T ss_pred eCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEc
Confidence 99999999986532 11 2489999999999999999999999884 211 17888887643
No 455
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.90 E-value=0.03 Score=65.34 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=111.8
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC--CCChhhHHHHhhcC--CeEEEEcCC--C--CHh----H----HhHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG--QVSATDVELATLFN--AIIYTFNTT--L--HPA----A----KTSA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG--~it~~Dv~lA~~~~--a~I~~Fnv~--~--~~~----~----~~~a 531 (673)
-|+-|--+=+...+..+....+-+-|+.+.-| +-|.....++...+ .+|+..|=- + +++ + .++.
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~ 188 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFA 188 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHH
Confidence 68888654444555555556677778887554 44556667776654 356666631 1 121 1 1112
Q ss_pred HHcCC---eEEEec-----hh---------hHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEe
Q psy4665 532 EELGV---TVKQFN-----VI---------YKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCS 594 (673)
Q Consensus 532 ~~~~V---~i~~~~-----iI---------Y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~ 594 (673)
++.+. .++.-+ -| |+- ..+.+.+....+|.....-.-++.|..+|..+.+ ...+|-+|.
T Consensus 189 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g-~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~---~~g~~G~v~ 264 (632)
T PRK05506 189 AKLGLHDVTFIPISALKGDNVVTRSARMPWYEG-PSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLD---FRGFAGTVA 264 (632)
T ss_pred HHcCCCCccEEEEecccCCCccccccCCCcccH-hHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCC---ceEEEEEEe
Confidence 23332 233222 11 211 2344455544333322222334556666653211 112456899
Q ss_pred eCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEE
Q psy4665 595 KGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVC 656 (673)
Q Consensus 595 ~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~ 656 (673)
.|.++.|..+.+...|+. .+|+||+.++++++++..|+.|||.+.+.. +++.||+|-.
T Consensus 265 ~G~l~~gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~l~~~~-~i~rG~vL~~ 322 (632)
T PRK05506 265 SGVVRPGDEVVVLPSGKT---SRVKRIVTPDGDLDEAFAGQAVTLTLADEI-DISRGDMLAR 322 (632)
T ss_pred cceeecCCEEEEcCCCce---EEEEEEEECCceeCEEcCCCeEEEEecCcc-ccCCccEEec
Confidence 999999999999998864 699999999999999999999999999866 9999999864
No 456
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.003 Score=67.54 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+...++++|++|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998853
No 457
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.87 E-value=0.006 Score=58.93 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLL 240 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~ 240 (673)
..+.+.++|||+.... .....+..+|.+++++.++........+.++.+...+.|+.+++||+|.......+..+.+.
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~ 168 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCE 168 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 3567999999975432 23345688999999999987666667778888888899999999999976544445555555
Q ss_pred HcC
Q psy4665 241 AQG 243 (673)
Q Consensus 241 ~~~ 243 (673)
+.+
T Consensus 169 ~~~ 171 (179)
T cd03110 169 EEG 171 (179)
T ss_pred HcC
Confidence 443
No 458
>KOG2423|consensus
Probab=96.85 E-value=0.00035 Score=73.05 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=42.0
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~ 173 (673)
+....-|+++|+||+||||++|.|+...+. +...+|-|--... +.+ -++|.|||+||.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY--ItL--mkrIfLIDcPGv 362 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY--ITL--MKRIFLIDCPGV 362 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH--HHH--HhceeEecCCCc
Confidence 456788999999999999999999988753 3445565532211 111 357999999996
No 459
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0057 Score=65.54 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc---ccccccceeeeEEEE-----------------EEEe-----------cCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAF-----------------VVTL-----------KSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~---~~~~~~g~T~~~~~~-----------------~v~~-----------~~~ 162 (673)
...+|+++|++|+||||-+-.|..... .....+-+|.|.... .+.. -..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 378999999999999999988854322 011112233332110 0000 034
Q ss_pred eEEEEEeCCCCCcchhhhhh----cc--ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMRSR----GA--HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~----~~--~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~ 236 (673)
+.+.|+||.|...+..+... .+ ....-..||++++.. .....+.+......++. =+++||+|-.. ..-...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~-s~G~~~ 358 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT-SLGNLF 358 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC-chhHHH
Confidence 57999999997555433221 11 223455677887752 22334555555544444 44589999754 344444
Q ss_pred HHHHHc
Q psy4665 237 NMLLAQ 242 (673)
Q Consensus 237 ~~l~~~ 242 (673)
..+.+.
T Consensus 359 s~~~e~ 364 (407)
T COG1419 359 SLMYET 364 (407)
T ss_pred HHHHHh
Confidence 444444
No 460
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.84 E-value=0.01 Score=62.74 Aligned_cols=136 Identities=25% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcc------ccccccceeee-------EEEEEEEecC--------------------
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSV------VKSEFGGITQH-------IGAFVVTLKS-------------------- 161 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~------~~~~~~g~T~~-------~~~~~v~~~~-------------------- 161 (673)
.|+..|-|.=|||||||++.|+.... ...+.+-+.++ .....+++.+
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 36778999999999999999986532 12222212222 1111122222
Q ss_pred ---CeEEEEEeCCCCCcchhhhh--------hccccCCeEEEEEECCCCChHhh---HHHHHHHHHcCCCEEEEEecCCC
Q psy4665 162 ---GEQVTFLDTPGHAAFSNMRS--------RGAHCTDIVVLVVAADDGVMEQT---VESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 162 ---~~~i~liDTpG~~~f~~~~~--------~~~~~aD~~vlVvda~~g~~~q~---~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
+....+|.|-|...=..... +..-..|.++-|||+.+...... .....++ ...=++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEEecccC
Confidence 22467889998643322211 22344688999999987443322 1222222 2345899999999
Q ss_pred CCCc-HHHHHHHHHHcCccccccCCceeEEEeec
Q psy4665 228 PAAD-IERTKNMLLAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 228 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA 260 (673)
.+.. .+.....+++.. ...+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~ln-------p~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKLN-------PRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHhC-------CCCeEEEccc
Confidence 8654 233344444432 2467777666
No 461
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.83 E-value=0.0099 Score=57.07 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=48.5
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCC
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAA 230 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~ 230 (673)
.+.++|||+..... ....+..+|.++++++++..........++.+...+.+ ..+++|++|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccccc
Confidence 68999999864432 33456889999999999876666666777777766665 6789999987543
No 462
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.82 E-value=0.0072 Score=58.18 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=34.1
Q ss_pred CeEEEEEECCCCChHhhHHHHHH--HHHcCCCEEEEEecCCCCC
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRM--AREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~--~~~~~iP~IvviNK~Dl~~ 229 (673)
|++++|+|+.++......+..+. +...+.|+|+++||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999999777766666666 4456789999999999963
No 463
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.76 E-value=0.0044 Score=68.09 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=37.7
Q ss_pred CeEEEEEeCCCCCcchhhhh------hccccCCeEEEEEECCCCChHhhHHHHHHHHH-cCCCEEEEEecCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRS------RGAHCTDIVVLVVAADDGVMEQTVESIRMARE-AKVPIIVAINKIDKP 228 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~------~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~-~~iP~IvviNK~Dl~ 228 (673)
++.+.|+||||......... ......|.++||+|+..+ ............ .++ .=+++||+|-.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccCc
Confidence 45689999999543322111 123457889999999754 233333333332 233 45669999963
No 464
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.75 E-value=0.019 Score=61.59 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=77.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc----------------cccccceeeeEE--------EEEEEecCC--eEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV----------------KSEFGGITQHIG--------AFVVTLKSG--EQVT 166 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~----------------~~~~~g~T~~~~--------~~~v~~~~~--~~i~ 166 (673)
..-.-++++|++-+||||++.++...-+. +....|-|+..+ +..+.+.++ .++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34577999999999999999998542110 011122222211 123334333 3688
Q ss_pred EEeCCCC--------Cc-----------------chhhhhh----cc--ccCCeEEEEEECCCCC------hHhhHHHHH
Q psy4665 167 FLDTPGH--------AA-----------------FSNMRSR----GA--HCTDIVVLVVAADDGV------MEQTVESIR 209 (673)
Q Consensus 167 liDTpG~--------~~-----------------f~~~~~~----~~--~~aD~~vlVvda~~g~------~~q~~~~l~ 209 (673)
|+||.|+ .+ |....+- -+ +..=++++--|.+-+. .+...+.++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999993 11 1111111 11 2222444444554322 123456778
Q ss_pred HHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 210 MAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 210 ~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
.++..++|+++++|=.+=......+..+.+.+. -+++++++++.
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ek--------Y~vpVlpvnc~ 218 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEK--------YDVPVLPVNCE 218 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHH--------hCCcEEEeehH
Confidence 888999999999998764332333334444332 14678887764
No 465
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.73 E-value=0.0039 Score=60.37 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=42.9
Q ss_pred eEEEEEeCCCCCcchhhh--h---hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMR--S---RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERT 235 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~--~---~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~ 235 (673)
....|+-|.|..+-.... . ...-..+.++.|+|+..-........ .........=++++||+|+.+.+ .+++
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADvIvlnK~D~~~~~~~i~~~ 163 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPE-LLREQIAFADVIVLNKIDLVSDEQKIERV 163 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SEEEEE-GGGHHHH--HHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchh-hhhhcchhcCEEEEeccccCChhhHHHHH
Confidence 357889999965544441 1 12244688999999976311111111 11122234458999999997544 2455
Q ss_pred HHHHHHc
Q psy4665 236 KNMLLAQ 242 (673)
Q Consensus 236 ~~~l~~~ 242 (673)
.+.+++.
T Consensus 164 ~~~ir~l 170 (178)
T PF02492_consen 164 REMIREL 170 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 466
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.73 E-value=0.0067 Score=62.70 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=73.7
Q ss_pred cccCCeEEEEEECCCCChH--hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 184 AHCTDIVVLVVAADDGVME--QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~--q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
....|-+++|+++.++... ...+.+-.+...++..++++||+|+.+.......+.+..+. . ..++++.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~----~--~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYE----D--IGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHH----h--CCeeEEEecCc
Confidence 3457788888888875443 34566777778899999999999997643333222222211 1 14689999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
++.++++|.+.+... +-++ -.-+|.|-..|++.|..
T Consensus 151 ~~~~~~~l~~~l~~~-----------------~svl--~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 151 NGDGLEELAELLAGK-----------------ITVL--LGQSGVGKSTLINALLP 186 (301)
T ss_pred CcccHHHHHHHhcCC-----------------eEEE--ECCCCCcHHHHHHhhCc
Confidence 999999998876432 2222 34578999999998864
No 467
>PRK10867 signal recognition particle protein; Provisional
Probab=96.69 E-value=0.0064 Score=66.87 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=36.8
Q ss_pred CeEEEEEeCCCCCcchhh-h---h--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNM-R---S--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKP 228 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~-~---~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~ 228 (673)
++.+.|+||||.-..... . . ......+-+++|+|+..+ ....+..+.... .++ .-+++||+|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 456899999995433211 1 1 112356788999998753 223333333332 233 45677999963
No 468
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.66 E-value=0.049 Score=62.77 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=111.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcCC-eEEEEcCCCCH---h----HHhHHHHcCCe
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFNA-IIYTFNTTLHP---A----AKTSAEELGVT 537 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~a-~I~~Fnv~~~~---~----~~~~a~~~~V~ 537 (673)
-|+-|..+-.......+...++-+-|+++.-|. -|...+..+...+- +|+..| |.+. + ..++++..+..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViN-KiDl~~~~~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVIN-KIDLPSADPERVKKEIEEVIGLD 153 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEE-CcCCCccCHHHHHHHHHHHhCCC
Confidence 588888775555555555556677777765552 23333444544444 444444 4432 1 13444545542
Q ss_pred ---E-----EEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeC
Q psy4665 538 ---V-----KQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRR 609 (673)
Q Consensus 538 ---i-----~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~ 609 (673)
+ .+..-|-+|++.+.+.+- +|.....-.-.|.|.++|... ..+.++-++|.+|+++.|..+.+++.
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp---~p~~~~~~pl~~~V~~~~~d~---~~G~v~~~rV~sG~lk~Gd~v~~~~~ 227 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVP---PPKGDPDAPLKALIFDSHYDN---YRGVVALVRVFEGTIKPGDKIRFMST 227 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCC---CCCCCCCCCeEEEEEEEEEeC---CCcEEEEEEEECCEEecCCEEEEecC
Confidence 2 223345566666554432 232222233456777777654 34679999999999999999999998
Q ss_pred CEEEEEEeeecccccccccccccccceeEEEEcC---CCCCCCCCCEEEE
Q psy4665 610 NEVLFEGKLESMKHLKEEVTSIKKELECGLRLED---PSIEFEPGDTIVC 656 (673)
Q Consensus 610 ~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~---~~~~~~~gD~i~~ 656 (673)
|+.--.+.|..+...+.+|.++..|+ +|..+.+ .. +++.||+|-.
T Consensus 228 ~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~-~~~~Gdtl~~ 275 (595)
T TIGR01393 228 GKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVS-DVRVGDTITH 275 (595)
T ss_pred CCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccC-ccCCCCEEEC
Confidence 86544456665555568999999999 8877754 45 8999999954
No 469
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.011 Score=64.13 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC----------ccc--cc-c--------------ccceeeeEEEEEE--------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT----------SVV--KS-E--------------FGGITQHIGAFVV-------- 157 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~----------~~~--~~-~--------------~~g~T~~~~~~~v-------- 157 (673)
.++..|+++|++|+||||.+..|... .+. .. . ..++. +.....
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~~~~~~~l~~~L 249 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKAIESFKDLKEEI 249 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEeeCcHHHHHHHH
Confidence 35678999999999999999887531 110 00 0 01111 100000
Q ss_pred EecCCeEEEEEeCCCCCcchhh----hhhccc--cCC-eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC
Q psy4665 158 TLKSGEQVTFLDTPGHAAFSNM----RSRGAH--CTD-IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 158 ~~~~~~~i~liDTpG~~~f~~~----~~~~~~--~aD-~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~ 230 (673)
....+..+.|+||||......+ ....+. ..+ -.+||+|++.+... ..+.++.....+ +-=+++||.|-..
T Consensus 250 ~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~-~~~~I~TKlDet~- 326 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFS-YKTVIFTKLDETT- 326 (388)
T ss_pred HHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeccCCC-
Confidence 0013567999999996443221 111222 123 58899999986322 223333332222 3567799999743
Q ss_pred cHHHHHHHHHHc
Q psy4665 231 DIERTKNMLLAQ 242 (673)
Q Consensus 231 ~~~~~~~~l~~~ 242 (673)
..-.+...+...
T Consensus 327 ~~G~~l~~~~~~ 338 (388)
T PRK12723 327 CVGNLISLIYEM 338 (388)
T ss_pred cchHHHHHHHHH
Confidence 333444444443
No 470
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.63 E-value=0.011 Score=63.41 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.|...+.|.-|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999999754
No 471
>KOG3887|consensus
Probab=96.60 E-value=0.011 Score=58.22 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcccc-----ccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh---hhhccccC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM---RSRGAHCT 187 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~-----~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~---~~~~~~~a 187 (673)
|+|.+||+--+||||+-....+.-.+. .....+|++.... .=..+.+||.||+.+|..- .+.-.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~-----sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN-----SFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh-----hhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 559999999999999987766543211 1111222221110 1135789999998665322 23345788
Q ss_pred CeEEEEEECCCCChHhhHHHH-HHHHHc----CCCEEEEEecCCCCC
Q psy4665 188 DIVVLVVAADDGVMEQTVESI-RMAREA----KVPIIVAINKIDKPA 229 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l-~~~~~~----~iP~IvviNK~Dl~~ 229 (673)
.++++|+|+.+...+...... -..+.. ++.+=+++.|.|-..
T Consensus 103 gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 103 GALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred CeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 999999999885544333222 222333 455888999999643
No 472
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.59 E-value=0.014 Score=53.93 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=62.0
Q ss_pred EEEeCCCCChhHHHHHHhcCcccccc-ccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC
Q psy4665 119 TIMGHVDHGKTTLLDTLRNTSVVKSE-FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD 197 (673)
Q Consensus 119 ~ivG~~n~GKSTLl~~L~~~~~~~~~-~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~ 197 (673)
..-|.+|+||||+.-.+...-..... ..-+..|..... -.+.+.++|||+... ......+..+|.+++|++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----LDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----CCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence 34578899999998777443111000 000000000000 015789999998543 22334678899999999998
Q ss_pred CCChHhhHHHHHHHHHc--CCCEEEEEecCCC
Q psy4665 198 DGVMEQTVESIRMAREA--KVPIIVAINKIDK 227 (673)
Q Consensus 198 ~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl 227 (673)
......+...++.+... ..++.+++|+++.
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 65555556666555432 3468899999975
No 473
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.014 Score=63.79 Aligned_cols=127 Identities=18% Similarity=0.202 Sum_probs=66.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc----------ccc---------------ccceeeeEEEEE-------EEec
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV----------KSE---------------FGGITQHIGAFV-------VTLK 160 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~----------~~~---------------~~g~T~~~~~~~-------v~~~ 160 (673)
....+++++|++|+||||++..|.+.... ..+ ..++........ ..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 45678999999999999999988542100 000 001110000000 001
Q ss_pred CCeEEEEEeCCCCCcchhhhh------hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRS------RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER 234 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~------~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~ 234 (673)
.+..+.++||+|......... ......+-.+||+|++.+.. ...+.+......+ +-=+++||.|-.. ..-.
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~-~~~~I~TKlDEt~-~~G~ 344 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHG-IHGCIITKVDEAA-SLGI 344 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCC-CCEEEEEeeeCCC-CccH
Confidence 345689999999654322211 11223456789999985322 1122333332222 2456789999753 3444
Q ss_pred HHHHHHHcC
Q psy4665 235 TKNMLLAQG 243 (673)
Q Consensus 235 ~~~~l~~~~ 243 (673)
+...+...+
T Consensus 345 ~l~~~~~~~ 353 (420)
T PRK14721 345 ALDAVIRRK 353 (420)
T ss_pred HHHHHHHhC
Confidence 455554443
No 474
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0044 Score=74.98 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=66.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcccccccc--ceeeeEEEEEEEecCCeEEEEEeCCC----CC--cch--hhh---
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG--GITQHIGAFVVTLKSGEQVTFLDTPG----HA--AFS--NMR--- 180 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~--g~T~~~~~~~v~~~~~~~i~liDTpG----~~--~f~--~~~--- 180 (673)
..|=-.|+|++|+||||++..--. ++...+.. ..+...+..++.|.-+..-.+|||.| |+ +.. ..+
T Consensus 124 eLPWy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred cCCceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 456678999999999999875422 12111110 00111112334444456788999999 21 111 112
Q ss_pred ------hhccccCCeEEEEEECCCCC--hHhhH-HHHH-------HH---HHcCCCEEEEEecCCCCC
Q psy4665 181 ------SRGAHCTDIVVLVVAADDGV--MEQTV-ESIR-------MA---REAKVPIIVAINKIDKPA 229 (673)
Q Consensus 181 ------~~~~~~aD~~vlVvda~~g~--~~q~~-~~l~-------~~---~~~~iP~IvviNK~Dl~~ 229 (673)
.|..+-.+++|+.+|+++-. ..+.. .+.. .+ .....|+.+++||+|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 24457789999999998722 12111 1111 11 224689999999999953
No 475
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.53 E-value=0.065 Score=61.85 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=110.2
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcCC-eEEEEcCCCCH---h----HHhHHHHcCCe
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFNA-IIYTFNTTLHP---A----AKTSAEELGVT 537 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~a-~I~~Fnv~~~~---~----~~~~a~~~~V~ 537 (673)
-|+-|..+-.......+..-+.-+-|+++.-|. -|...+.++...+- +|+..| |++. + ..++.+..+..
T Consensus 79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViN-KiDl~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLN-KIDLPAADPERVKQEIEDVIGID 157 (600)
T ss_pred EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCcccHHHHHHHHHHHhCCC
Confidence 388888776655555555556677778776552 23333444544443 455555 3331 1 12343444443
Q ss_pred ---EEE-----echhhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEee
Q psy4665 538 ---VKQ-----FNVIYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVR 608 (673)
Q Consensus 538 ---i~~-----~~iIY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r 608 (673)
++. ..-|.+|++.+.+. +| |.....-.-.|.|.+.+.-. ..+.++-++|.+|.++.|..+.+++
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~----lp~P~~~~~~pl~~~Vfd~~~d~---~~G~v~~~rV~sG~Lk~Gd~i~~~~ 230 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVER----IPPPKGDPDAPLKALIFDSWYDN---YRGVVVLVRVVDGTLKKGDKIKMMS 230 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHh----CccccCCCCCCceEEEEEEEecC---CCceEEEEEEEcCEEecCCEEEEec
Confidence 322 23355666655443 34 32222222345555555433 3467999999999999999999999
Q ss_pred CCEEEEEEeeecccccccccccccccceeEEEEc---CCCCCCCCCCEEEEEE
Q psy4665 609 RNEVLFEGKLESMKHLKEEVTSIKKELECGLRLE---DPSIEFEPGDTIVCFV 658 (673)
Q Consensus 609 ~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~---~~~~~~~~gD~i~~~~ 658 (673)
.|+.-..+.|..+.-...++.++.+|+ +|..+. +.. +++.||+|-.-.
T Consensus 231 ~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~-~~~~Gdtl~~~~ 281 (600)
T PRK05433 231 TGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVR-DARVGDTITLAK 281 (600)
T ss_pred CCceEEEEEeeccCCCceECcEEcCCC-EEEEeccccccc-ccCCCCEEECCC
Confidence 887654466665555678999999999 776654 445 899999995443
No 476
>PRK13695 putative NTPase; Provisional
Probab=96.50 E-value=0.015 Score=55.90 Aligned_cols=41 Identities=10% Similarity=0.266 Sum_probs=30.9
Q ss_pred ccccCCeEEEEEE---CCCCChHhhHHHHHHHHHcCCCEEEEEecC
Q psy4665 183 GAHCTDIVVLVVA---ADDGVMEQTVESIRMAREAKVPIIVAINKI 225 (673)
Q Consensus 183 ~~~~aD~~vlVvd---a~~g~~~q~~~~l~~~~~~~iP~IvviNK~ 225 (673)
.+..+|+ +++| ..+....+..+.+..+.+.+.|++++.||.
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 3455666 6888 555556677788888878899999999985
No 477
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.47 E-value=0.0093 Score=51.97 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=50.0
Q ss_pred EEEEe-CCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 118 VTIMG-HVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 118 V~ivG-~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
|+++| ..|+||||+.-.|...-.. . +. ....+..+....+.++|||+..... ....+..+|.+++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~---~~----~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R---GK----RVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C---CC----cEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 6799999998887543321 1 11 0111222222578999999865332 22467889999999988
Q ss_pred CCCChHhhHHHHH
Q psy4665 197 DDGVMEQTVESIR 209 (673)
Q Consensus 197 ~~g~~~q~~~~l~ 209 (673)
+........+.++
T Consensus 72 ~~~s~~~~~~~~~ 84 (104)
T cd02042 72 SPLDLDGLEKLLE 84 (104)
T ss_pred CHHHHHHHHHHHH
Confidence 7644444444433
No 478
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=96.46 E-value=0.021 Score=47.73 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=59.2
Q ss_pred eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc-ccccccccccccceeEEEEcCCCCCCCCCCE
Q psy4665 575 QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK-HLKEEVTSIKKELECGLRLEDPSIEFEPGDT 653 (673)
Q Consensus 575 ~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~ 653 (673)
.+|++......+.++=|||.+|++++|..+.+.+.++..-.++|-.+. ..+.+++++.+|+=|+| .+.+ ++..||.
T Consensus 4 ~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~-~~~~Gdt 80 (83)
T cd04092 4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLK-QTRTGDT 80 (83)
T ss_pred EEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECCC-CcccCCE
Confidence 355554222345688899999999999999988877544345666664 47789999999998886 5667 8999998
Q ss_pred EE
Q psy4665 654 IV 655 (673)
Q Consensus 654 i~ 655 (673)
|-
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 73
No 479
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.0079 Score=65.34 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=65.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc-------c--cccc---------------ccceeeeEEE--E----EEEecCCe
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS-------V--VKSE---------------FGGITQHIGA--F----VVTLKSGE 163 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~-------~--~~~~---------------~~g~T~~~~~--~----~v~~~~~~ 163 (673)
++..++++|++|+||||++..|.... + ...+ ..+....... . .+. ..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~ 300 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGS 300 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCC
Confidence 34579999999999999999986421 1 0000 0111100000 0 000 1356
Q ss_pred EEEEEeCCCCCcchh-h---hhhccc-----cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH
Q psy4665 164 QVTFLDTPGHAAFSN-M---RSRGAH-----CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER 234 (673)
Q Consensus 164 ~i~liDTpG~~~f~~-~---~~~~~~-----~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~ 234 (673)
.+.|+||||...... . +...+. ...-.+||+|++.+... ..+.++.....++ -=++++|.|-.. ..-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~~-~glIlTKLDEt~-~~G~ 377 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLNY-RRILLTKLDEAD-FLGS 377 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 789999999753221 1 111111 23467899999875322 2333333332332 466789999753 3334
Q ss_pred HHHHHHHc
Q psy4665 235 TKNMLLAQ 242 (673)
Q Consensus 235 ~~~~l~~~ 242 (673)
+.......
T Consensus 378 il~i~~~~ 385 (432)
T PRK12724 378 FLELADTY 385 (432)
T ss_pred HHHHHHHH
Confidence 44444444
No 480
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.46 E-value=0.013 Score=64.76 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-cc--ccccceeeeE------------------EEEEEEe----------cCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VK--SEFGGITQHI------------------GAFVVTL----------KSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~--~~~~g~T~~~------------------~~~~v~~----------~~~ 162 (673)
...+++++|++|+||||++-.|..... .. ....-++.|. ....... ..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 346899999999999998887743211 00 0000011110 0000000 024
Q ss_pred eEEEEEeCCCCCcchh----hhhhccc---cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 163 EQVTFLDTPGHAAFSN----MRSRGAH---CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~----~~~~~~~---~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
..+.|+||||...+.. .....+. ...-..+|++++.+. ....+.+......++ -=+++||+|... ....+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet~-~~G~i 376 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDETS-SLGSI 376 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEecccccc-cccHH
Confidence 5789999999754431 1111112 234668888887532 223333444443332 358899999843 34455
Q ss_pred HHHHHHcCc
Q psy4665 236 KNMLLAQGI 244 (673)
Q Consensus 236 ~~~l~~~~~ 244 (673)
...+...++
T Consensus 377 ~~~~~~~~l 385 (424)
T PRK05703 377 LSLLIESGL 385 (424)
T ss_pred HHHHHHHCC
Confidence 555555443
No 481
>KOG1534|consensus
Probab=96.41 E-value=0.0063 Score=58.93 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCc-ch-----hhhhhcccc---CCeEEEEEECCC-----CChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 164 QVTFLDTPGHAA-FS-----NMRSRGAHC---TDIVVLVVAADD-----GVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 164 ~i~liDTpG~~~-f~-----~~~~~~~~~---aD~~vlVvda~~-----g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
.+.++|+||+-. |. ....+.+.+ --++++++|+.- .........+.......+|.|=+++|||+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 488999999632 22 111122221 225667777643 1122233444455567899999999999964
No 482
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=96.38 E-value=0.027 Score=47.05 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=58.0
Q ss_pred eeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccc-ccccccccccceeEEEEcCCCCCCCCCCEE
Q psy4665 576 MFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL-KEEVTSIKKELECGLRLEDPSIEFEPGDTI 654 (673)
Q Consensus 576 ~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~-k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i 654 (673)
+|++...+..+.++=+||.+|++++|..+++++.++..-..+|--++-. +.+++++..|+=|+| .+.+ ++.+||.|
T Consensus 5 Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~-~~~~Gdtl 81 (83)
T cd04088 5 VFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLK-DTATGDTL 81 (83)
T ss_pred EEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCC-CCccCCEe
Confidence 4554322334679999999999999999999987654333455555554 789999999999988 5666 89999987
Q ss_pred E
Q psy4665 655 V 655 (673)
Q Consensus 655 ~ 655 (673)
-
T Consensus 82 ~ 82 (83)
T cd04088 82 C 82 (83)
T ss_pred e
Confidence 3
No 483
>KOG3859|consensus
Probab=96.36 E-value=0.0079 Score=60.46 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=68.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccc----cceeeeEEEEEEEecCCe--EEEEEeCCCCC-------cchh--
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF----GGITQHIGAFVVTLKSGE--QVTFLDTPGHA-------AFSN-- 178 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~----~g~T~~~~~~~v~~~~~~--~i~liDTpG~~-------~f~~-- 178 (673)
-.++|.-+|.+|-|||||++.|.+..+...+. ++.......+.+.- ++. +++++||.|+- .|..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEEEeecccccccCcccccchHH
Confidence 35789999999999999999999988765443 33333332222222 222 68899999952 1211
Q ss_pred ---------hhh------hcc-----ccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 179 ---------MRS------RGA-----HCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 179 ---------~~~------~~~-----~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
... +.+ ...+++++.|+.+- +...-+.-.++.+ ..++.+|-++-|.|...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~L-dskVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKL-DSKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHH-hhhhhhHHHHHHhhhhh
Confidence 111 111 34567888887663 3333333333332 23566777888999754
No 484
>KOG0460|consensus
Probab=96.35 E-value=0.0049 Score=63.68 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeec
Q psy4665 542 NVIYKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLES 620 (673)
Q Consensus 542 ~iIY~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~s 620 (673)
+.|++|+|.+-.++ | |.......=-.-|-.+|.++ | .++|+=-++..|++++|..+-++-.++.+ ...+.-
T Consensus 231 ~aI~kLldavDsyi----p~P~R~~~~pFl~pie~vfsI~-G--RGTVvtGrlERG~lKkG~e~eivG~~~~l-kttvtg 302 (449)
T KOG0460|consen 231 EAIEKLLDAVDSYI----PTPERDLDKPFLLPIEDVFSIP-G--RGTVVTGRLERGVLKKGDEVEIVGHNKTL-KTTVTG 302 (449)
T ss_pred HHHHHHHHHHhccC----CCcccccCCCceeehhheeeec-C--CceEEEEEEeecccccCCEEEEeccCcce-eeEeeh
Confidence 67899998766544 3 44444444445577899998 3 46899999999999999999999988875 668999
Q ss_pred ccccccccccccccceeEEEEcCCCC-CCCCCC
Q psy4665 621 MKHLKEEVTSIKKELECGLRLEDPSI-EFEPGD 652 (673)
Q Consensus 621 l~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD 652 (673)
++.|++.++++.+|++||+-+.+-.. |++-|-
T Consensus 303 iemF~K~ld~a~AGDn~G~LlRGik~~dvkRGm 335 (449)
T KOG0460|consen 303 IEMFRKSLDEAQAGDNLGALLRGIKREDVKRGM 335 (449)
T ss_pred HHHHHHHHHhcccccceehhhhcCCHHHHhccc
Confidence 99999999999999999987776442 444443
No 485
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.30 E-value=0.028 Score=61.58 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=79.9
Q ss_pred ceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC--------C---hHhhHHHHHHHHH--
Q psy4665 147 GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG--------V---MEQTVESIRMARE-- 213 (673)
Q Consensus 147 g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g--------~---~~q~~~~l~~~~~-- 213 (673)
..|..+....+.+.++..+.++|++|+..-+.-|...+..++++|+|++.++- . ..+.+..++.+..
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 34555555566654678999999999988888888888999999999998751 1 1233444444443
Q ss_pred --cCCCEEEEEecCCCC---------------C------CcHHHHHHHHHHcCccccccC---CceeEEEeeccCCCChh
Q psy4665 214 --AKVPIIVAINKIDKP---------------A------ADIERTKNMLLAQGITVEDLG---GDIQAVPISALTGTNVD 267 (673)
Q Consensus 214 --~~iP~IvviNK~Dl~---------------~------~~~~~~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~ 267 (673)
.+.|+|+++||+|+. + .+.+.+...+........... ..+-+..++|.+..++.
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 368999999999961 0 123334444433321111111 23455577888777777
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
.+++.+.+.
T Consensus 380 ~v~~~v~~~ 388 (389)
T PF00503_consen 380 KVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhcCc
Confidence 777776553
No 486
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.26 E-value=0.022 Score=50.05 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=59.9
Q ss_pred EeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC
Q psy4665 121 MGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV 200 (673)
Q Consensus 121 vG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~ 200 (673)
-+..|+||||+.-.|...-.... |...-. .......+..+.++|||+..... ....+..+|.++++++.+...
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~---~~~~~l--~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA---GRRVLL--VDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPS 78 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC---CCcEEE--EECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHH
Confidence 45689999998887743321110 111111 01111122378999999865432 334678899999999998766
Q ss_pred hHhhHHHHHHHHHcCC----CEEEEEec
Q psy4665 201 MEQTVESIRMAREAKV----PIIVAINK 224 (673)
Q Consensus 201 ~~q~~~~l~~~~~~~i----P~IvviNK 224 (673)
.....+.++.++..+. .+.+++|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 79 IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6666777777766554 46677875
No 487
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.22 E-value=0.12 Score=59.54 Aligned_cols=179 Identities=15% Similarity=0.103 Sum_probs=105.9
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhh--HHHHhhcCC-eEEEEcCCCCH------hHH----hHH----
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATD--VELATLFNA-IIYTFNTTLHP------AAK----TSA---- 531 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~D--v~lA~~~~a-~I~~Fnv~~~~------~~~----~~a---- 531 (673)
|+-|..+-..+....+.....-+=|+++.-|+..++- +..|...+- +|+..| |++. .+. ++.
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviN-KiD~~~a~~~~v~~ei~~l~~~~g 148 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVIN-KIDRPSARPDEVVDEVFDLFAELG 148 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEE-CCCCCCcCHHHHHHHHHHHHHhhc
Confidence 7777766444444445555566777777666543322 334444443 344444 4332 111 111
Q ss_pred ---HHcCCeEEEec---------------hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEE
Q psy4665 532 ---EELGVTVKQFN---------------VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRC 593 (673)
Q Consensus 532 ---~~~~V~i~~~~---------------iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V 593 (673)
++..+.+...+ -|-.|++.+-+.+- +|.....-.-.+.|.+++... -.+.++-++|
T Consensus 149 ~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP---~P~~~~~~pl~~~V~~i~~d~---~~Grv~~gRV 222 (594)
T TIGR01394 149 ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP---APKGDLDEPLQMLVTNLDYDE---YLGRIAIGRV 222 (594)
T ss_pred cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC---CCCCCCCCCEEEEEEEEEeeC---CCceEEEEEE
Confidence 11233343211 24556555544432 122111122345666666544 3456899999
Q ss_pred eeCeeeeCCeEEEeeCCEEEEEEeeeccccc----ccccccccccceeEEEEcCCCCCCCCCCEEEEE
Q psy4665 594 SKGVLKKNALFKLVRRNEVLFEGKLESMKHL----KEEVTSIKKELECGLRLEDPSIEFEPGDTIVCF 657 (673)
Q Consensus 594 ~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~----k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~ 657 (673)
.+|+++.|..+.+.+.+.....++|.+|..+ +.+|.++.+|+-|+|. +.+ +++.||+|-.-
T Consensus 223 ~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl~-~i~~Gdtl~~~ 287 (594)
T TIGR01394 223 HRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GLE-DINIGETIADP 287 (594)
T ss_pred EeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CCc-ccCCCCEEeCC
Confidence 9999999999999985333335688888754 7899999999999876 677 99999999543
No 488
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.16 E-value=0.019 Score=48.62 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=50.3
Q ss_pred EEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-hhhccccCCeEEEEEEC
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM-RSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~-~~~~~~~aD~~vlVvda 196 (673)
+++.|..|+||||+...|...-.. .+. ..... + .+.++|+|+....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----~g~------~v~~~-~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----RGK------RVLLI-D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCC------eEEEE-C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999988654321 111 11111 1 6889999986544432 12356788999999998
Q ss_pred CCCChHhhHHH
Q psy4665 197 DDGVMEQTVES 207 (673)
Q Consensus 197 ~~g~~~q~~~~ 207 (673)
+..........
T Consensus 69 ~~~~~~~~~~~ 79 (99)
T cd01983 69 EALAVLGARRL 79 (99)
T ss_pred chhhHHHHHHH
Confidence 87555444443
No 489
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.15 E-value=0.031 Score=48.93 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=56.2
Q ss_pred EEEEeeeeEecC-CC----CcCcEEeEEEeeCeeeeCCeEEEee------CCEEEE---EEeeecccccccccccccccc
Q psy4665 570 EANVLQMFLITD-GK----KKVPVAGCRCSKGVLKKNALFKLVR------RNEVLF---EGKLESMKHLKEEVTSIKKEL 635 (673)
Q Consensus 570 ~a~v~~~f~~~~-~~----~~~~iaG~~V~~G~~~~~~~~~v~r------~~~~i~---~g~i~sl~~~k~~v~~~~~g~ 635 (673)
.+.|...|.+++ |. -++.|+|-++..|.++.|..+.+.. +|++-| .-+|.||+.++++++++.+|.
T Consensus 7 ~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~a~pGg 86 (113)
T cd03688 7 RMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQEAVPGG 86 (113)
T ss_pred eEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccEEeCCC
Confidence 466788899873 21 2467999999999999999997552 233332 459999999999999999999
Q ss_pred eeEEE
Q psy4665 636 ECGLR 640 (673)
Q Consensus 636 ecgi~ 640 (673)
-+|+.
T Consensus 87 liGvg 91 (113)
T cd03688 87 LIGVG 91 (113)
T ss_pred eEEEc
Confidence 99994
No 490
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.14 E-value=0.032 Score=57.59 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc------c--ccc-cc----------cceeeeEEEEEEEe-----------c--C
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS------V--VKS-EF----------GGITQHIGAFVVTL-----------K--S 161 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~------~--~~~-~~----------~g~T~~~~~~~v~~-----------~--~ 161 (673)
+..+++++|++|+|||||+..|...- . ... .. ..-...+....... . .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 56899999999999999998874321 0 000 00 00001111111000 0 2
Q ss_pred CeEEEEEeCCCCCcchhh----hhh--ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNM----RSR--GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~----~~~--~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+..+.|+||||....... +.. .....|-.+||+|++... .+..+.++.....+ +-=++++|.|-.. ..-.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet~-~~G~~ 230 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDETA-SSGEL 230 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCCC-CccHH
Confidence 457899999997543221 111 123457789999987532 22233334333322 2466789999854 33344
Q ss_pred HHHHHHc
Q psy4665 236 KNMLLAQ 242 (673)
Q Consensus 236 ~~~l~~~ 242 (673)
.......
T Consensus 231 l~~~~~~ 237 (270)
T PRK06731 231 LKIPAVS 237 (270)
T ss_pred HHHHHHH
Confidence 4444443
No 491
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.068 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...+|.+-|+||+|||||+..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 356899999999999999988753
No 492
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.037 Score=64.64 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcccc----------c--cc-------------cceeeeEEEE--E----EEecCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK----------S--EF-------------GGITQHIGAF--V----VTLKSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~----------~--~~-------------~g~T~~~~~~--~----v~~~~~ 162 (673)
+...++++|++|+||||++..|....... . +. .++....... . +.--.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 34689999999999999999886432100 0 00 1111100000 0 000034
Q ss_pred eEEEEEeCCCCCcchhh-hh-----hccccCCeEEEEEECCCCChHhhHHHHHHHHHc-CC-CEEEEEecCCCCCCcHHH
Q psy4665 163 EQVTFLDTPGHAAFSNM-RS-----RGAHCTDIVVLVVAADDGVMEQTVESIRMAREA-KV-PIIVAINKIDKPAADIER 234 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~-~~-----~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~-~i-P~IvviNK~Dl~~~~~~~ 234 (673)
+.+.||||||....... .. ......+-.+||+|++.+.. ...+.++..... .. +-=+++||.|-.. ..-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt~-~~G~ 341 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEAT-HLGP 341 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCCC-CccH
Confidence 57999999994322211 11 11234567899999985321 112233333322 11 3456799999753 3344
Q ss_pred HHHHHHHcC
Q psy4665 235 TKNMLLAQG 243 (673)
Q Consensus 235 ~~~~l~~~~ 243 (673)
+.......+
T Consensus 342 iL~i~~~~~ 350 (767)
T PRK14723 342 ALDTVIRHR 350 (767)
T ss_pred HHHHHHHHC
Confidence 444444443
No 493
>PRK01889 GTPase RsgA; Reviewed
Probab=95.94 E-value=0.0076 Score=65.03 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.+++++|.+|+|||||+|.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 589999999999999999998643
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.017 Score=64.30 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc--------cc--cccc---------------cceeeeEEEE-------EEEecC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS--------VV--KSEF---------------GGITQHIGAF-------VVTLKS 161 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~--------~~--~~~~---------------~g~T~~~~~~-------~v~~~~ 161 (673)
+...++++|++|+||||++..|.... +. ..+. .++....... ...+ .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L-~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL-R 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc-c
Confidence 45789999999999999999886421 10 0000 0111000000 0011 2
Q ss_pred CeEEEEEeCCCCCcchhhhh---hccc---cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRS---RGAH---CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~---~~~~---~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+..+.++||+|......... ..+. ...-.+||+|++.+. ....+.++.....+ .--+++||+|-.. ..-.+
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~-~~g~IlTKlDet~-~~G~~ 410 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPG-LAGCILTKLDEAA-SLGGA 410 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCC-CCEEEEeCCCCcc-cchHH
Confidence 44688999999433221111 1111 122368999998643 12223333333333 3455689999753 34445
Q ss_pred HHHHHHcC
Q psy4665 236 KNMLLAQG 243 (673)
Q Consensus 236 ~~~l~~~~ 243 (673)
...+...+
T Consensus 411 l~i~~~~~ 418 (484)
T PRK06995 411 LDVVIRYK 418 (484)
T ss_pred HHHHHHHC
Confidence 55554443
No 495
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.91 E-value=0.039 Score=58.71 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=88.0
Q ss_pred EEeCCCCC-cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcc
Q psy4665 167 FLDTPGHA-AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGIT 245 (673)
Q Consensus 167 liDTpG~~-~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~ 245 (673)
+-+-|||. ++.......+..+|+++.|+||.++........-+... +.|.++++||+|+.... ...++.......
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~--~~~~W~~~~~~~ 89 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKE--VTKKWKKYFKKE 89 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHH--HHHHHHHHHHhc
Confidence 44568984 56677777889999999999999987776666555554 45669999999997532 233333222110
Q ss_pred ccccCCceeEEEeeccCCCChhhHHHHHHHHH----HHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTK----NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 246 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~----~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
. ....+.+|+..+.+...+..++.... +.+...+.... ... +.+=...+.|-..|++.|...
T Consensus 90 ----~-~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----~~~-v~vvG~PNVGKSslIN~L~~k 155 (322)
T COG1161 90 ----E-GIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKR----KIR-VGVVGYPNVGKSTLINRLLGK 155 (322)
T ss_pred ----C-CCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCcc----ceE-EEEEcCCCCcHHHHHHHHhcc
Confidence 0 24568899999998888876655443 23332222111 111 234457789999999988653
No 496
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.84 E-value=0.033 Score=57.77 Aligned_cols=100 Identities=19% Similarity=0.318 Sum_probs=61.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc---c------------
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA---F------------ 176 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~---f------------ 176 (673)
..|+|++.|+|++|.||||+++++........+... ...++..+.+|.-.+ |
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 357899999999999999999999876643222110 123566666665211 1
Q ss_pred ---------hhhhhhccccCCeEEEEEECCC----CChHhhHHHHHHHH----HcCCCEEEEEec
Q psy4665 177 ---------SNMRSRGAHCTDIVVLVVAADD----GVMEQTVESIRMAR----EAKVPIIVAINK 224 (673)
Q Consensus 177 ---------~~~~~~~~~~aD~~vlVvda~~----g~~~q~~~~l~~~~----~~~iP~IvviNK 224 (673)
.......++...+=++|||=-+ |...+..+.++.++ +.++|+|.++++
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1111133456667789998655 44444445554444 357899988864
No 497
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.81 E-value=0.023 Score=43.56 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=24.5
Q ss_pred ccCCeEEEEEECCC--CChH-hhHHHHHHHHH-c-CCCEEEEEecCC
Q psy4665 185 HCTDIVVLVVAADD--GVME-QTVESIRMARE-A-KVPIIVAINKID 226 (673)
Q Consensus 185 ~~aD~~vlVvda~~--g~~~-q~~~~l~~~~~-~-~iP~IvviNK~D 226 (673)
+..+++++++|.+. |... +....++.++. + +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 66899999999997 3322 22344444544 3 899999999998
No 498
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.66 E-value=0.047 Score=52.41 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+++.++|+|++|+|||||+++|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35778999999999999999999754
No 499
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=95.56 E-value=0.093 Score=43.61 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=56.7
Q ss_pred eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccc-ccccccccccceeEEEEcCCCCCCCCCCE
Q psy4665 575 QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL-KEEVTSIKKELECGLRLEDPSIEFEPGDT 653 (673)
Q Consensus 575 ~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~-k~~v~~~~~g~ecgi~~~~~~~~~~~gD~ 653 (673)
.+|++....+ +.++=+||.+|.+++|..+...+.++..-.++|-.+.-. +.+++++..|+=|++ .+. ++.+||.
T Consensus 4 ~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~~~~Gdt 78 (81)
T cd04091 4 LAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--DCASGDT 78 (81)
T ss_pred EEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--CcccCCE
Confidence 5677653333 778999999999999999999887764333566666644 789999999998774 442 4789998
Q ss_pred E
Q psy4665 654 I 654 (673)
Q Consensus 654 i 654 (673)
|
T Consensus 79 l 79 (81)
T cd04091 79 F 79 (81)
T ss_pred e
Confidence 7
No 500
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.45 E-value=0.058 Score=51.55 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=49.0
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCE-EEEEecCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI-IVAINKIDK 227 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~-IvviNK~Dl 227 (673)
.++.+.++|||+.-.-.......+..+|.+++|+.+.........+.++.+...+.|+ -+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 3567999999986321111111136789999999888777777888888888888885 578999985
Done!