Query psy4665
Match_columns 673
No_of_seqs 555 out of 4340
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:39:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izy_P Translation initiation 100.0 1.6E-96 6E-101 820.7 16.0 495 113-658 2-537 (537)
2 1zo1_I IF2, translation initia 100.0 1.9E-94 6.4E-99 797.8 11.2 495 113-665 2-501 (501)
3 1g7s_A Translation initiation 100.0 3.9E-82 1.3E-86 716.3 30.2 494 113-667 3-559 (594)
4 2crv_A IF-2MT, translation ini 100.0 5E-37 1.7E-41 266.3 10.4 113 560-673 2-114 (120)
5 3vqt_A RF-3, peptide chain rel 100.0 7.1E-35 2.4E-39 327.9 27.6 372 113-539 29-480 (548)
6 2rdo_7 EF-G, elongation factor 100.0 7.8E-33 2.7E-37 320.2 32.2 350 113-503 8-466 (704)
7 2ywe_A GTP-binding protein LEP 100.0 6.5E-33 2.2E-37 312.7 28.3 423 113-645 4-481 (600)
8 3tr5_A RF-3, peptide chain rel 100.0 4.3E-33 1.5E-37 311.8 25.7 377 113-545 11-467 (528)
9 1dar_A EF-G, elongation factor 100.0 3E-33 1E-37 323.3 24.4 347 113-503 10-459 (691)
10 4fn5_A EF-G 1, elongation fact 100.0 3E-33 1E-37 325.0 19.9 297 113-419 11-406 (709)
11 3cb4_D GTP-binding protein LEP 100.0 3.4E-32 1.1E-36 307.6 27.7 420 114-645 3-476 (599)
12 3j2k_7 ERF3, eukaryotic polype 100.0 6.5E-33 2.2E-37 305.0 20.8 275 113-432 15-342 (439)
13 2xex_A Elongation factor G; GT 100.0 3.8E-32 1.3E-36 314.2 24.7 290 113-418 8-394 (693)
14 3j25_A Tetracycline resistance 100.0 1E-34 3.5E-39 333.1 1.1 290 114-417 1-330 (638)
15 2h5e_A Peptide chain release f 100.0 3.8E-31 1.3E-35 296.3 26.1 371 113-543 11-466 (529)
16 1d1n_A Initiation factor 2; be 100.0 5.4E-33 1.8E-37 233.2 7.7 98 564-665 2-99 (99)
17 3p26_A Elongation factor 1 alp 100.0 2.3E-31 8E-36 296.6 23.4 273 113-418 31-363 (483)
18 2dy1_A Elongation factor G; tr 100.0 4.6E-31 1.6E-35 304.1 22.9 343 113-503 7-433 (665)
19 1zun_B Sulfate adenylate trans 100.0 2E-30 6.8E-35 285.3 24.7 264 114-421 23-330 (434)
20 2c78_A Elongation factor TU-A; 100.0 2.4E-30 8.1E-35 282.4 21.8 268 114-418 10-309 (405)
21 3izq_1 HBS1P, elongation facto 100.0 1.6E-30 5.3E-35 296.2 20.9 273 113-418 165-497 (611)
22 1d2e_A Elongation factor TU (E 100.0 4.4E-30 1.5E-34 279.4 21.8 258 115-418 3-291 (397)
23 1jny_A EF-1-alpha, elongation 100.0 3E-30 1E-34 283.9 20.6 263 114-419 5-319 (435)
24 1r5b_A Eukaryotic peptide chai 100.0 2.2E-30 7.4E-35 287.1 18.3 266 113-422 41-361 (467)
25 1f60_A Elongation factor EEF1A 100.0 4.7E-30 1.6E-34 283.7 19.4 273 114-418 6-329 (458)
26 3mca_A HBS1, elongation factor 100.0 2.5E-30 8.5E-35 293.7 17.2 268 113-419 175-491 (592)
27 2elf_A Protein translation elo 100.0 2.5E-29 8.4E-34 270.0 23.6 238 117-415 23-275 (370)
28 1s0u_A EIF-2-gamma, translatio 100.0 4.3E-29 1.5E-33 272.6 23.4 258 113-421 6-318 (408)
29 1kk1_A EIF2gamma; initiation o 100.0 5.7E-29 1.9E-33 271.9 24.1 257 114-421 9-320 (410)
30 1wb1_A Translation elongation 100.0 4.1E-30 1.4E-34 285.7 14.3 256 113-418 17-285 (482)
31 3avx_A Elongation factor TS, e 100.0 1.5E-28 5.3E-33 288.0 21.2 259 113-418 294-582 (1289)
32 1z9b_A Translation initiation 100.0 3.9E-30 1.3E-34 230.1 4.2 101 455-555 35-135 (135)
33 3sjy_A Translation initiation 100.0 8.7E-28 3E-32 261.8 23.4 265 113-428 6-319 (403)
34 1n0u_A EF-2, elongation factor 99.9 1.2E-26 3.9E-31 273.6 17.8 293 114-417 18-473 (842)
35 2hjg_A GTP-binding protein ENG 99.9 6.3E-26 2.2E-30 249.7 12.9 265 4-280 37-350 (436)
36 4dcu_A GTP-binding protein ENG 99.9 4E-25 1.4E-29 244.7 11.7 265 4-280 57-370 (456)
37 2lkc_A Translation initiation 99.9 5.6E-24 1.9E-28 203.7 16.0 168 111-279 4-171 (178)
38 1mky_A Probable GTP-binding pr 99.9 3.2E-23 1.1E-27 228.2 18.1 266 4-280 35-356 (439)
39 2qtf_A Protein HFLX, GTP-bindi 99.9 9.5E-22 3.3E-26 210.4 10.4 243 27-279 82-354 (364)
40 3iev_A GTP-binding protein ERA 99.8 3.5E-20 1.2E-24 194.4 21.1 209 113-341 8-230 (308)
41 1ega_A Protein (GTP-binding pr 99.8 4.8E-20 1.6E-24 192.7 19.7 238 114-375 7-257 (301)
42 1wf3_A GTP-binding protein; GT 99.8 5.7E-20 2E-24 191.9 19.9 154 114-276 6-170 (301)
43 4bas_A ADP-ribosylation factor 99.8 5.3E-20 1.8E-24 179.3 18.0 163 112-280 14-190 (199)
44 2hxs_A RAB-26, RAS-related pro 99.8 3.1E-20 1.1E-24 177.4 15.6 155 114-277 5-171 (178)
45 4dkx_A RAS-related protein RAB 99.8 5E-20 1.7E-24 183.0 17.5 155 114-277 12-174 (216)
46 2bme_A RAB4A, RAS-related prot 99.8 8.7E-20 3E-24 175.8 18.3 160 113-281 8-175 (186)
47 3tw8_B RAS-related protein RAB 99.8 5.3E-20 1.8E-24 176.0 16.7 158 113-280 7-172 (181)
48 3tkl_A RAS-related protein RAB 99.8 8.6E-20 2.9E-24 177.4 17.6 158 114-281 15-181 (196)
49 3clv_A RAB5 protein, putative; 99.8 1.6E-19 5.4E-24 176.0 19.5 157 114-279 6-204 (208)
50 1upt_A ARL1, ADP-ribosylation 99.8 1.4E-19 4.8E-24 171.5 18.6 158 112-277 4-167 (171)
51 2efe_B Small GTP-binding prote 99.8 1E-19 3.5E-24 174.3 17.1 155 113-276 10-172 (181)
52 2hup_A RAS-related protein RAB 99.8 9.7E-20 3.3E-24 178.7 17.2 157 113-279 27-193 (201)
53 2fu5_C RAS-related protein RAB 99.8 5.9E-20 2E-24 176.6 14.9 157 114-280 7-172 (183)
54 2gf9_A RAS-related protein RAB 99.8 2.1E-19 7.1E-24 174.1 18.9 158 113-279 20-185 (189)
55 2dyk_A GTP-binding protein; GT 99.8 4.4E-20 1.5E-24 173.2 13.5 150 116-276 2-159 (161)
56 2gco_A H9, RHO-related GTP-bin 99.8 9.4E-20 3.2E-24 178.7 16.2 166 108-277 18-198 (201)
57 1wms_A RAB-9, RAB9, RAS-relate 99.8 2.6E-19 8.9E-24 170.8 18.8 155 114-277 6-172 (177)
58 4dhe_A Probable GTP-binding pr 99.8 3.3E-20 1.1E-24 184.6 13.0 163 113-278 27-210 (223)
59 1zbd_A Rabphilin-3A; G protein 99.8 2.4E-19 8.3E-24 175.6 19.0 161 114-283 7-175 (203)
60 2ew1_A RAS-related protein RAB 99.8 1.4E-19 4.7E-24 177.9 17.1 157 114-280 25-190 (201)
61 1g16_A RAS-related protein SEC 99.8 5.1E-20 1.7E-24 174.3 13.5 155 115-278 3-164 (170)
62 2g6b_A RAS-related protein RAB 99.8 2.1E-19 7.3E-24 171.9 18.0 156 113-278 8-173 (180)
63 2h57_A ADP-ribosylation factor 99.8 1.6E-19 5.3E-24 175.1 17.1 160 112-278 18-186 (190)
64 2a5j_A RAS-related protein RAB 99.8 1.8E-19 6.1E-24 175.0 17.5 160 113-281 19-186 (191)
65 3kkq_A RAS-related protein M-R 99.8 1.5E-19 5.3E-24 173.7 16.8 154 113-277 16-180 (183)
66 3iby_A Ferrous iron transport 99.8 6E-20 2E-24 187.4 14.5 150 116-276 2-164 (256)
67 1r2q_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 171.4 15.6 154 114-276 5-166 (170)
68 1z2a_A RAS-related protein RAB 99.8 1E-19 3.4E-24 171.9 14.9 155 114-277 4-165 (168)
69 2h17_A ADP-ribosylation factor 99.8 1E-19 3.4E-24 175.2 15.1 158 110-275 16-179 (181)
70 2il1_A RAB12; G-protein, GDP, 99.8 9.9E-20 3.4E-24 177.1 15.1 157 113-277 24-188 (192)
71 1c1y_A RAS-related protein RAP 99.8 1.8E-19 6.1E-24 170.0 16.4 154 115-277 3-165 (167)
72 2wji_A Ferrous iron transport 99.8 1.5E-19 5.3E-24 171.3 15.9 150 115-276 3-162 (165)
73 3bc1_A RAS-related protein RAB 99.8 3.1E-19 1.1E-23 172.6 18.4 158 114-280 10-186 (195)
74 1z08_A RAS-related protein RAB 99.8 1.7E-19 6E-24 170.7 16.1 155 114-277 5-167 (170)
75 1z0f_A RAB14, member RAS oncog 99.8 1.8E-19 6.3E-24 171.9 16.2 156 113-277 13-176 (179)
76 1u8z_A RAS-related protein RAL 99.8 1.9E-19 6.7E-24 169.5 16.1 154 114-277 3-165 (168)
77 1ky3_A GTP-binding protein YPT 99.8 2.2E-19 7.6E-24 171.8 16.6 158 113-278 6-177 (182)
78 2fn4_A P23, RAS-related protei 99.8 2E-19 6.9E-24 171.9 16.2 158 113-281 7-174 (181)
79 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.3E-19 4.4E-24 174.3 14.8 160 114-277 4-178 (186)
80 1zd9_A ADP-ribosylation factor 99.8 2.3E-19 7.7E-24 173.9 16.6 158 112-276 19-182 (188)
81 2bcg_Y Protein YP2, GTP-bindin 99.8 2.3E-19 8E-24 176.2 16.8 158 114-280 7-172 (206)
82 1ksh_A ARF-like protein 2; sma 99.8 3.4E-19 1.2E-23 171.9 17.6 158 113-278 16-179 (186)
83 3reg_A RHO-like small GTPase; 99.8 1.8E-19 6.3E-24 175.2 15.3 155 113-277 21-186 (194)
84 4dsu_A GTPase KRAS, isoform 2B 99.8 3.2E-19 1.1E-23 171.9 16.8 156 114-280 3-167 (189)
85 3cph_A RAS-related protein SEC 99.8 3.8E-19 1.3E-23 175.3 17.6 159 113-281 18-184 (213)
86 1m2o_B GTP-binding protein SAR 99.8 4.7E-19 1.6E-23 172.2 17.8 160 112-275 20-188 (190)
87 2y8e_A RAB-protein 6, GH09086P 99.8 4.2E-19 1.4E-23 169.4 17.2 154 114-276 13-174 (179)
88 1r8s_A ADP-ribosylation factor 99.8 4E-19 1.4E-23 167.3 16.6 154 116-277 1-160 (164)
89 3t5g_A GTP-binding protein RHE 99.8 1.6E-19 5.3E-24 173.4 14.0 155 114-279 5-169 (181)
90 1f6b_A SAR1; gtpases, N-termin 99.8 3.1E-19 1E-23 174.8 16.3 159 113-275 23-195 (198)
91 1kao_A RAP2A; GTP-binding prot 99.8 1.9E-19 6.6E-24 169.4 14.3 153 115-278 3-165 (167)
92 1zj6_A ADP-ribosylation factor 99.8 4.5E-19 1.5E-23 171.4 17.2 157 113-277 14-176 (187)
93 2fg5_A RAB-22B, RAS-related pr 99.8 3.2E-19 1.1E-23 173.4 16.2 155 113-276 21-183 (192)
94 1ek0_A Protein (GTP-binding pr 99.8 5.9E-19 2E-23 166.7 17.6 152 115-275 3-165 (170)
95 1mky_A Probable GTP-binding pr 99.8 3.1E-19 1.1E-23 196.5 18.0 190 116-316 2-202 (439)
96 1vg8_A RAS-related protein RAB 99.8 3.8E-19 1.3E-23 174.5 16.7 158 113-278 6-174 (207)
97 2atx_A Small GTP binding prote 99.8 5.1E-19 1.7E-23 172.0 17.2 155 114-277 17-191 (194)
98 2p5s_A RAS and EF-hand domain 99.8 4.5E-19 1.5E-23 173.4 16.8 157 112-277 25-195 (199)
99 4gzl_A RAS-related C3 botulinu 99.8 2.4E-19 8E-24 176.4 14.8 159 113-275 28-201 (204)
100 2oil_A CATX-8, RAS-related pro 99.8 4.9E-19 1.7E-23 171.9 16.9 158 113-279 23-188 (193)
101 2q3h_A RAS homolog gene family 99.8 5.1E-19 1.7E-23 173.0 16.9 158 112-279 17-195 (201)
102 3t1o_A Gliding protein MGLA; G 99.8 3.5E-19 1.2E-23 172.9 15.6 158 114-280 13-193 (198)
103 3q3j_B RHO-related GTP-binding 99.8 2.9E-19 1E-23 177.2 15.4 156 113-278 25-202 (214)
104 2a9k_A RAS-related protein RAL 99.8 5.1E-19 1.7E-23 170.1 16.7 155 113-278 16-180 (187)
105 2fv8_A H6, RHO-related GTP-bin 99.8 3.4E-19 1.2E-23 175.5 15.8 164 110-277 20-198 (207)
106 3bwd_D RAC-like GTP-binding pr 99.8 1.2E-19 4E-24 174.1 12.1 155 113-276 6-178 (182)
107 1x3s_A RAS-related protein RAB 99.8 4.8E-19 1.7E-23 171.7 16.5 156 114-278 14-177 (195)
108 2bov_A RAla, RAS-related prote 99.8 7.1E-19 2.4E-23 172.3 17.7 156 113-279 12-177 (206)
109 2erx_A GTP-binding protein DI- 99.8 5.5E-19 1.9E-23 167.2 16.4 152 115-276 3-164 (172)
110 1z0j_A RAB-22, RAS-related pro 99.8 5.4E-19 1.9E-23 167.1 16.2 154 114-276 5-166 (170)
111 2o52_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 174.5 15.3 159 113-281 23-190 (200)
112 3a1s_A Iron(II) transport prot 99.8 4.5E-19 1.5E-23 181.1 16.5 153 114-278 4-166 (258)
113 2j0v_A RAC-like GTP-binding pr 99.8 2.8E-19 9.5E-24 176.5 14.4 156 114-278 8-179 (212)
114 2qu8_A Putative nucleolar GTP- 99.8 1.1E-18 3.8E-23 174.6 18.9 163 111-278 25-204 (228)
115 2nzj_A GTP-binding protein REM 99.8 1.2E-18 4.2E-23 165.6 18.3 155 114-279 3-169 (175)
116 1z06_A RAS-related protein RAB 99.8 3E-19 1E-23 173.0 14.2 155 113-276 18-185 (189)
117 2f7s_A C25KG, RAS-related prot 99.8 2.7E-19 9.1E-24 177.3 14.1 160 113-281 23-201 (217)
118 3con_A GTPase NRAS; structural 99.8 7.8E-19 2.7E-23 170.0 17.1 155 114-279 20-183 (190)
119 3i8s_A Ferrous iron transport 99.8 1.2E-19 4.1E-24 187.1 11.9 151 114-276 2-166 (274)
120 1fzq_A ADP-ribosylation factor 99.8 1.3E-18 4.3E-23 167.7 18.4 156 113-276 14-175 (181)
121 1svi_A GTP-binding protein YSX 99.8 5.6E-19 1.9E-23 171.5 15.9 156 113-277 21-193 (195)
122 3q85_A GTP-binding protein REM 99.8 8.6E-19 2.9E-23 165.9 16.7 153 116-277 3-165 (169)
123 2ce2_X GTPase HRAS; signaling 99.8 1.1E-18 3.9E-23 163.7 17.4 153 115-277 3-163 (166)
124 2b6h_A ADP-ribosylation factor 99.8 9.5E-19 3.2E-23 170.3 17.4 157 112-276 26-188 (192)
125 3oes_A GTPase rhebl1; small GT 99.8 6.3E-19 2.2E-23 172.6 16.0 157 113-279 22-187 (201)
126 2x77_A ADP-ribosylation factor 99.8 6E-19 2.1E-23 170.7 15.7 158 113-278 20-183 (189)
127 1moz_A ARL1, ADP-ribosylation 99.8 5.3E-19 1.8E-23 169.8 14.9 158 113-278 16-179 (183)
128 3k53_A Ferrous iron transport 99.8 6.3E-19 2.2E-23 181.5 16.4 152 114-278 2-165 (271)
129 3q72_A GTP-binding protein RAD 99.8 1.1E-18 3.9E-23 164.5 16.9 152 115-278 2-163 (166)
130 2j1l_A RHO-related GTP-binding 99.8 6.5E-19 2.2E-23 174.6 15.5 156 113-277 32-207 (214)
131 3dz8_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 172.9 13.3 159 113-280 21-187 (191)
132 2gf0_A GTP-binding protein DI- 99.8 9.5E-19 3.2E-23 170.4 16.4 154 113-276 6-168 (199)
133 4djt_A GTP-binding nuclear pro 99.8 3.2E-19 1.1E-23 176.9 13.1 161 113-279 9-175 (218)
134 2yc2_C IFT27, small RAB-relate 99.8 2.2E-19 7.6E-24 176.0 11.9 158 113-279 18-192 (208)
135 2fh5_B SR-beta, signal recogni 99.8 7E-19 2.4E-23 173.9 15.5 161 113-276 5-213 (214)
136 3cpj_B GTP-binding protein YPT 99.8 6.4E-19 2.2E-23 175.7 15.3 155 114-278 12-175 (223)
137 2gj8_A MNME, tRNA modification 99.8 1.3E-19 4.5E-24 173.3 9.8 149 115-277 4-164 (172)
138 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-18 3.7E-23 168.5 15.9 153 114-278 6-168 (188)
139 1m7b_A RND3/RHOE small GTP-bin 99.8 6.5E-19 2.2E-23 169.9 14.0 156 113-277 5-181 (184)
140 3cbq_A GTP-binding protein REM 99.8 1.7E-18 5.8E-23 169.1 16.8 155 113-277 21-186 (195)
141 3pqc_A Probable GTP-binding pr 99.8 1.7E-18 5.7E-23 167.8 16.4 157 113-277 21-192 (195)
142 3c5c_A RAS-like protein 12; GD 99.8 1.8E-18 6.1E-23 167.6 14.8 154 113-277 19-184 (187)
143 2atv_A RERG, RAS-like estrogen 99.8 3.7E-18 1.3E-22 166.4 17.1 155 113-278 26-190 (196)
144 3qq5_A Small GTP-binding prote 99.8 2.3E-19 7.8E-24 195.0 9.2 156 113-278 32-195 (423)
145 3o47_A ADP-ribosylation factor 99.8 1.7E-18 5.8E-23 183.2 15.7 158 112-277 162-325 (329)
146 3b1v_A Ferrous iron uptake tra 99.8 9E-19 3.1E-23 180.1 13.0 149 115-276 3-161 (272)
147 3ihw_A Centg3; RAS, centaurin, 99.8 3.8E-18 1.3E-22 164.9 16.6 151 112-278 17-179 (184)
148 1gwn_A RHO-related GTP-binding 99.8 1.5E-18 5.2E-23 170.9 14.0 156 113-277 26-202 (205)
149 3gee_A MNME, tRNA modification 99.8 1E-18 3.6E-23 193.0 13.6 153 114-278 232-397 (476)
150 3llu_A RAS-related GTP-binding 99.8 2.3E-18 8E-23 168.0 14.5 165 110-276 15-194 (196)
151 3l0i_B RAS-related protein RAB 99.8 6.4E-20 2.2E-24 179.5 3.2 154 113-276 31-193 (199)
152 2iwr_A Centaurin gamma 1; ANK 99.8 6E-18 2E-22 161.8 16.6 150 114-279 6-169 (178)
153 2cxx_A Probable GTP-binding pr 99.8 1.9E-18 6.5E-23 166.8 13.2 156 116-278 2-183 (190)
154 3gj0_A GTP-binding nuclear pro 99.8 5.5E-19 1.9E-23 175.8 9.6 154 113-277 13-173 (221)
155 2hjg_A GTP-binding protein ENG 99.8 1.4E-18 4.9E-23 190.9 12.9 186 115-316 3-197 (436)
156 2xtp_A GTPase IMAP family memb 99.8 3E-18 1E-22 175.1 12.7 161 113-279 20-208 (260)
157 1xzp_A Probable tRNA modificat 99.7 2.6E-18 9E-23 189.9 12.3 152 114-278 242-404 (482)
158 3geh_A MNME, tRNA modification 99.7 2.8E-18 9.5E-23 188.9 10.7 152 114-278 223-383 (462)
159 3lvq_E ARF-GAP with SH3 domain 99.7 2E-17 7E-22 185.0 16.5 160 113-280 320-485 (497)
160 3r7w_A Gtpase1, GTP-binding pr 99.7 2.3E-17 7.8E-22 172.9 15.7 157 115-275 3-177 (307)
161 2g3y_A GTP-binding protein GEM 99.7 7.1E-17 2.4E-21 159.7 17.5 155 114-278 36-202 (211)
162 3th5_A RAS-related C3 botulinu 99.6 2.9E-19 1E-23 175.3 0.0 163 113-276 28-202 (204)
163 4dcu_A GTP-binding protein ENG 99.7 4.3E-18 1.5E-22 188.2 9.1 187 113-315 21-216 (456)
164 3lxw_A GTPase IMAP family memb 99.7 1.3E-17 4.4E-22 169.2 11.6 165 113-279 19-208 (247)
165 2wkq_A NPH1-1, RAS-related C3 99.7 7.1E-17 2.4E-21 170.3 16.1 156 112-277 152-328 (332)
166 2cjw_A GTP-binding protein GEM 99.7 1.9E-16 6.3E-21 154.2 16.8 155 114-278 5-171 (192)
167 1lnz_A SPO0B-associated GTP-bi 99.7 1.3E-17 4.6E-22 176.5 9.2 156 115-278 158-329 (342)
168 2e87_A Hypothetical protein PH 99.7 3.8E-16 1.3E-20 167.1 19.4 157 113-279 165-336 (357)
169 2zej_A Dardarin, leucine-rich 99.7 6.7E-17 2.3E-21 155.9 11.9 159 116-277 3-176 (184)
170 2aka_B Dynamin-1; fusion prote 99.7 1.7E-16 5.7E-21 165.3 14.9 167 113-282 24-256 (299)
171 1nrj_B SR-beta, signal recogni 99.7 6.4E-17 2.2E-21 160.2 10.9 189 112-316 9-216 (218)
172 2f9l_A RAB11B, member RAS onco 99.7 8.6E-16 2.9E-20 150.0 17.9 157 115-281 5-170 (199)
173 3dpu_A RAB family protein; roc 99.6 2E-16 6.8E-21 178.4 10.2 155 113-278 39-207 (535)
174 3c5h_A Glucocorticoid receptor 99.6 2.5E-16 8.5E-21 160.5 8.7 159 112-277 16-253 (255)
175 3lxx_A GTPase IMAP family memb 99.6 1.6E-15 5.5E-20 152.8 13.7 115 113-229 27-159 (239)
176 3t5d_A Septin-7; GTP-binding p 99.6 7.5E-16 2.6E-20 158.7 11.4 155 115-276 8-201 (274)
177 1oix_A RAS-related protein RAB 99.6 6.8E-15 2.3E-19 142.8 17.1 152 115-276 29-189 (191)
178 1jwy_B Dynamin A GTPase domain 99.6 3E-15 1E-19 157.0 12.7 161 113-277 22-260 (315)
179 3r7w_B Gtpase2, GTP-binding pr 99.6 4.9E-15 1.7E-19 154.3 13.4 155 117-275 1-170 (331)
180 1pui_A ENGB, probable GTP-bind 99.6 1.6E-14 5.6E-19 141.8 14.1 157 114-277 25-197 (210)
181 3def_A T7I23.11 protein; chlor 99.6 1E-14 3.5E-19 149.2 12.2 115 114-229 35-165 (262)
182 2x2e_A Dynamin-1; nitration, h 99.6 9.8E-15 3.4E-19 155.9 11.7 168 113-283 29-262 (353)
183 2ged_A SR-beta, signal recogni 99.5 1.6E-14 5.5E-19 139.8 9.5 119 113-239 46-181 (193)
184 2j69_A Bacterial dynamin-like 99.5 7.6E-14 2.6E-18 161.3 13.9 165 113-277 67-323 (695)
185 1udx_A The GTP-binding protein 99.5 1.8E-13 6.3E-18 148.1 15.5 156 115-278 157-324 (416)
186 3zvr_A Dynamin-1; hydrolase, D 99.5 1.4E-13 4.8E-18 158.1 14.3 165 113-280 49-279 (772)
187 1wxq_A GTP-binding protein; st 99.5 7.3E-14 2.5E-18 150.9 11.1 84 116-199 1-114 (397)
188 1h65_A Chloroplast outer envel 99.5 1.2E-13 4.2E-18 141.7 12.1 115 114-229 38-168 (270)
189 3t34_A Dynamin-related protein 99.5 7.4E-14 2.5E-18 149.5 10.2 157 112-274 31-256 (360)
190 4a9a_A Ribosome-interacting GT 99.5 1.2E-13 4.2E-18 147.2 11.2 115 112-228 69-195 (376)
191 2qag_A Septin-2, protein NEDD5 99.4 1.3E-13 4.5E-18 147.4 8.4 156 114-277 36-231 (361)
192 2wsm_A Hydrogenase expression/ 99.4 1.5E-13 5.1E-18 136.2 7.6 153 113-279 28-214 (221)
193 3p32_A Probable GTPase RV1496/ 99.4 2.7E-13 9.2E-18 144.8 8.6 113 161-280 170-285 (355)
194 1jal_A YCHF protein; nucleotid 99.4 3.9E-13 1.3E-17 142.5 9.5 83 116-198 3-108 (363)
195 2p67_A LAO/AO transport system 99.4 3.6E-13 1.2E-17 143.0 9.0 111 161-280 147-262 (341)
196 2qpt_A EH domain-containing pr 99.4 1.2E-12 4E-17 147.4 12.6 117 113-229 63-232 (550)
197 2dby_A GTP-binding protein; GD 99.4 7.7E-13 2.6E-17 141.1 10.2 83 116-198 2-111 (368)
198 2www_A Methylmalonic aciduria 99.4 1.6E-12 5.6E-17 138.2 12.1 161 113-280 72-280 (349)
199 1yrb_A ATP(GTP)binding protein 99.3 2.4E-12 8.3E-17 131.0 6.6 115 163-278 109-256 (262)
200 2hf9_A Probable hydrogenase ni 99.2 2.4E-11 8.3E-16 120.6 10.8 152 113-278 36-223 (226)
201 2qnr_A Septin-2, protein NEDD5 99.2 3.1E-11 1.1E-15 125.7 8.7 157 114-277 17-212 (301)
202 4fid_A G protein alpha subunit 99.1 2.8E-10 9.7E-15 119.5 12.4 130 149-279 148-328 (340)
203 2qag_C Septin-7; cell cycle, c 99.1 1.8E-10 6.2E-15 124.7 10.0 152 114-275 30-223 (418)
204 2qm8_A GTPase/ATPase; G protei 99.0 4.4E-10 1.5E-14 118.8 10.6 113 161-280 146-262 (337)
205 1cip_A Protein (guanine nucleo 99.0 7.8E-10 2.7E-14 117.3 10.6 129 149-278 180-343 (353)
206 1u0l_A Probable GTPase ENGC; p 99.0 8.2E-10 2.8E-14 115.0 8.4 156 130-316 32-191 (301)
207 1xe1_A Hypothetical protein PF 98.9 1.6E-09 5.3E-14 93.6 8.1 84 566-658 32-115 (116)
208 1zcb_A G alpha I/13; GTP-bindi 98.9 2.2E-09 7.6E-14 114.2 11.1 154 124-278 156-352 (362)
209 2j37_W Signal recognition part 98.9 7.4E-10 2.5E-14 122.4 6.9 160 113-276 99-310 (504)
210 2ohf_A Protein OLA1, GTP-bindi 98.9 1.4E-09 4.8E-14 116.3 8.0 85 114-198 21-128 (396)
211 3ec1_A YQEH GTPase; atnos1, at 98.8 2.3E-10 7.9E-15 122.5 -2.8 111 115-229 162-288 (369)
212 3ohm_A Guanine nucleotide-bind 98.8 2.4E-08 8.1E-13 104.5 10.6 130 148-278 153-317 (327)
213 3h2y_A GTPase family protein; 98.7 3.4E-10 1.2E-14 121.1 -4.0 123 115-241 160-300 (368)
214 1azs_C GS-alpha; complex (lyas 98.7 2.8E-08 9.5E-13 106.7 9.5 129 149-278 204-384 (402)
215 2xtz_A Guanine nucleotide-bind 98.7 4.4E-08 1.5E-12 103.8 10.0 155 124-278 132-344 (354)
216 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 5.9E-08 2E-12 104.0 9.1 86 113-198 18-127 (392)
217 2yv5_A YJEQ protein; hydrolase 98.6 1.6E-07 5.4E-12 97.6 10.2 115 173-315 66-186 (302)
218 2qag_B Septin-6, protein NEDD5 98.5 4.2E-07 1.4E-11 98.0 11.4 112 116-229 43-190 (427)
219 2v3c_C SRP54, signal recogniti 98.5 6.1E-08 2.1E-12 105.5 4.9 113 114-229 98-252 (432)
220 3l82_B F-box only protein 4; T 98.4 6.5E-07 2.2E-11 86.4 10.0 160 111-275 12-219 (227)
221 1tq4_A IIGP1, interferon-induc 98.4 1E-06 3.5E-11 95.0 12.3 159 114-276 68-250 (413)
222 3sop_A Neuronal-specific septi 98.4 6.5E-07 2.2E-11 91.3 9.6 112 116-229 3-154 (270)
223 1f5n_A Interferon-induced guan 98.3 2.8E-07 9.5E-12 103.6 4.5 98 113-213 36-147 (592)
224 1puj_A YLQF, conserved hypothe 98.3 2E-06 6.9E-11 88.3 10.0 134 167-315 3-141 (282)
225 3dm5_A SRP54, signal recogniti 98.3 4.9E-06 1.7E-10 90.2 12.7 142 114-269 99-281 (443)
226 3ec1_A YQEH GTPase; atnos1, at 98.2 1.4E-06 4.8E-11 93.0 7.3 133 164-317 50-185 (369)
227 1puj_A YLQF, conserved hypothe 98.2 8.8E-07 3E-11 91.0 5.2 58 113-174 118-176 (282)
228 3l2o_B F-box only protein 4; s 98.2 4.7E-06 1.6E-10 84.3 9.9 101 171-276 195-305 (312)
229 3e1y_E Eukaryotic peptide chai 98.1 8.6E-06 2.9E-10 79.3 10.0 94 327-429 3-101 (204)
230 3kl4_A SRP54, signal recogniti 98.1 3.2E-06 1.1E-10 91.5 6.6 142 114-269 96-280 (433)
231 3h2y_A GTPase family protein; 98.0 3.5E-06 1.2E-10 89.9 6.2 132 165-317 49-183 (368)
232 1j8m_F SRP54, signal recogniti 98.0 3.8E-05 1.3E-09 79.3 13.0 141 114-269 97-281 (297)
233 3cnl_A YLQF, putative uncharac 97.8 7.1E-06 2.4E-10 83.3 3.3 57 116-176 100-157 (262)
234 2elf_A Protein translation elo 97.8 0.0001 3.4E-09 78.6 11.1 182 468-656 65-275 (370)
235 3szr_A Interferon-induced GTP- 97.8 5E-05 1.7E-09 86.3 9.3 68 163-230 147-229 (608)
236 2c78_A Elongation factor TU-A; 97.8 0.00018 6.1E-09 77.7 13.2 184 468-655 80-305 (405)
237 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.7E-10 81.9 2.9 115 170-315 4-120 (262)
238 1d2e_A Elongation factor TU (E 97.7 0.00045 1.5E-08 74.3 15.7 184 468-655 71-287 (397)
239 1xe1_A Hypothetical protein PF 97.7 0.00054 1.8E-08 59.1 12.0 78 328-415 32-113 (116)
240 3j2k_7 ERF3, eukaryotic polype 97.6 0.00055 1.9E-08 74.6 14.8 180 468-656 100-325 (439)
241 3e70_C DPA, signal recognition 97.5 0.00019 6.4E-09 75.1 8.9 143 113-269 127-310 (328)
242 2xxa_A Signal recognition part 97.5 0.00013 4.4E-09 79.3 7.5 113 113-228 98-253 (433)
243 1jny_A EF-1-alpha, elongation 97.4 0.00045 1.5E-08 75.2 10.4 183 468-656 89-315 (435)
244 3avx_A Elongation factor TS, e 97.4 0.0018 6.1E-08 77.3 15.5 184 468-655 364-578 (1289)
245 1r5b_A Eukaryotic peptide chai 97.3 0.00065 2.2E-08 74.7 10.5 180 468-656 126-354 (467)
246 3q5d_A Atlastin-1; G protein, 97.3 0.00022 7.4E-09 77.5 6.2 26 113-138 65-90 (447)
247 1zun_B Sulfate adenylate trans 97.3 0.0004 1.4E-08 75.7 8.4 182 468-656 109-324 (434)
248 3e1y_E Eukaryotic peptide chai 97.2 0.00088 3E-08 65.0 8.8 78 571-656 9-87 (204)
249 4dzz_A Plasmid partitioning pr 97.2 0.0013 4.4E-08 63.3 9.4 80 161-243 74-158 (206)
250 1f60_A Elongation factor EEF1A 97.1 0.001 3.5E-08 72.9 9.2 101 546-656 225-326 (458)
251 1t9h_A YLOQ, probable GTPase E 97.1 0.0005 1.7E-08 71.0 5.9 110 182-316 82-195 (307)
252 1s0u_A EIF-2-gamma, translatio 97.0 0.0079 2.7E-07 64.7 15.3 185 468-655 86-311 (408)
253 3p26_A Elongation factor 1 alp 97.0 0.004 1.4E-07 68.6 12.5 185 468-656 116-360 (483)
254 3mca_A HBS1, elongation factor 97.0 0.0016 5.4E-08 73.6 9.1 100 546-656 386-487 (592)
255 2yhs_A FTSY, cell division pro 96.8 0.0024 8.4E-08 69.8 8.6 126 113-242 291-464 (503)
256 2rcn_A Probable GTPase ENGC; Y 96.7 0.0035 1.2E-07 66.0 9.1 108 183-316 127-237 (358)
257 1zu4_A FTSY; GTPase, signal re 96.7 0.0023 7.9E-08 66.6 7.3 78 161-242 190-280 (320)
258 3izq_1 HBS1P, elongation facto 96.7 0.0068 2.3E-07 68.7 11.3 186 468-656 250-494 (611)
259 2px0_A Flagellar biosynthesis 96.7 0.00089 3E-08 68.9 3.7 126 113-242 103-265 (296)
260 3cwq_A Para family chromosome 96.6 0.0021 7.1E-08 62.5 6.0 80 161-242 66-148 (209)
261 1kk1_A EIF2gamma; initiation o 96.6 0.0058 2E-07 65.8 10.2 108 545-655 188-313 (410)
262 3sjy_A Translation initiation 96.6 0.0035 1.2E-07 67.4 8.2 109 544-656 179-306 (403)
263 1wb1_A Translation elongation 96.6 0.0018 6.1E-08 71.4 5.7 179 468-654 78-280 (482)
264 2ffh_A Protein (FFH); SRP54, s 96.6 0.0012 4.3E-08 71.1 4.2 65 161-228 179-250 (425)
265 1vma_A Cell division protein F 96.5 0.0032 1.1E-07 65.0 6.5 24 114-137 103-126 (306)
266 1rj9_A FTSY, signal recognitio 96.5 0.0044 1.5E-07 64.0 7.4 24 114-137 101-124 (304)
267 3end_A Light-independent proto 96.1 0.0094 3.2E-07 61.3 7.8 65 162-227 156-225 (307)
268 2yv5_A YJEQ protein; hydrolase 95.9 0.0049 1.7E-07 63.5 4.4 22 115-136 165-186 (302)
269 1ls1_A Signal recognition part 95.9 0.0072 2.4E-07 62.1 5.3 77 162-242 180-263 (295)
270 2rcn_A Probable GTPase ENGC; Y 95.6 0.0057 2E-07 64.4 3.5 25 115-139 215-239 (358)
271 1t9h_A YLOQ, probable GTPase E 95.6 0.0032 1.1E-07 65.0 1.3 25 115-139 173-197 (307)
272 1bif_A 6-phosphofructo-2-kinas 95.3 0.0025 8.6E-08 70.0 -0.6 110 113-226 37-160 (469)
273 1lvg_A Guanylate kinase, GMP k 94.8 0.012 3.9E-07 56.6 2.7 24 115-138 4-27 (198)
274 1u0l_A Probable GTPase ENGC; p 94.7 0.011 3.8E-07 60.8 2.4 25 115-139 169-193 (301)
275 4ido_A Atlastin-1; GTPase, GTP 94.7 0.038 1.3E-06 59.6 6.4 97 114-212 66-194 (457)
276 3tau_A Guanylate kinase, GMP k 94.5 0.022 7.4E-07 55.0 3.7 28 112-139 5-32 (208)
277 1kgd_A CASK, peripheral plasma 94.4 0.022 7.4E-07 53.7 3.5 24 115-138 5-28 (180)
278 3tr0_A Guanylate kinase, GMP k 94.4 0.022 7.5E-07 54.4 3.6 25 114-138 6-30 (205)
279 1ye8_A Protein THEP1, hypothet 94.4 0.02 6.8E-07 54.0 3.2 23 116-138 1-23 (178)
280 3zvl_A Bifunctional polynucleo 94.3 0.068 2.3E-06 57.5 7.5 89 112-226 255-346 (416)
281 3cb4_D GTP-binding protein LEP 94.3 0.22 7.6E-06 56.0 11.9 183 469-658 77-278 (599)
282 1d1n_A Initiation factor 2; be 94.2 0.06 2E-06 45.1 5.1 78 332-417 8-92 (99)
283 3a00_A Guanylate kinase, GMP k 94.1 0.022 7.4E-07 53.9 2.7 23 116-138 2-24 (186)
284 1s96_A Guanylate kinase, GMP k 94.0 0.028 9.5E-07 54.9 3.4 28 112-139 13-40 (219)
285 2rdo_7 EF-G, elongation factor 93.9 0.18 6.2E-06 58.0 10.4 81 570-656 318-399 (704)
286 1np6_A Molybdopterin-guanine d 93.9 0.033 1.1E-06 52.4 3.4 25 114-138 5-29 (174)
287 3ney_A 55 kDa erythrocyte memb 93.8 0.036 1.2E-06 53.2 3.6 56 114-172 18-75 (197)
288 2h5e_A Peptide chain release f 93.7 0.11 3.7E-06 57.8 7.9 76 575-656 299-381 (529)
289 1kag_A SKI, shikimate kinase I 93.7 0.031 1.1E-06 51.8 3.0 24 115-138 4-27 (173)
290 1znw_A Guanylate kinase, GMP k 93.7 0.03 1E-06 53.9 3.0 25 114-138 19-43 (207)
291 3c8u_A Fructokinase; YP_612366 93.7 0.029 1E-06 54.0 2.9 25 114-138 21-45 (208)
292 1zp6_A Hypothetical protein AT 93.7 0.035 1.2E-06 52.3 3.3 24 115-138 9-32 (191)
293 1cke_A CK, MSSA, protein (cyti 93.7 0.037 1.3E-06 53.8 3.5 24 114-137 4-27 (227)
294 2bbw_A Adenylate kinase 4, AK4 93.6 0.04 1.4E-06 54.6 3.6 24 113-136 25-48 (246)
295 2qor_A Guanylate kinase; phosp 93.4 0.043 1.5E-06 52.7 3.4 27 112-138 9-35 (204)
296 2xex_A Elongation factor G; GT 93.3 0.19 6.5E-06 57.7 9.3 80 571-656 311-391 (693)
297 1z6g_A Guanylate kinase; struc 93.3 0.038 1.3E-06 53.8 3.0 26 114-139 22-47 (218)
298 1dar_A EF-G, elongation factor 93.3 0.22 7.5E-06 57.2 9.8 81 570-656 310-391 (691)
299 2j41_A Guanylate kinase; GMP, 93.2 0.049 1.7E-06 52.0 3.5 26 114-139 5-30 (207)
300 3asz_A Uridine kinase; cytidin 93.2 0.042 1.4E-06 52.8 3.0 25 114-138 5-29 (211)
301 3t61_A Gluconokinase; PSI-biol 93.2 0.043 1.5E-06 52.4 3.1 24 114-137 17-40 (202)
302 2ph1_A Nucleotide-binding prot 93.2 0.17 5.9E-06 50.4 7.7 67 161-227 127-194 (262)
303 2ywe_A GTP-binding protein LEP 93.1 0.71 2.4E-05 51.8 13.3 183 468-657 78-279 (600)
304 4gp7_A Metallophosphoesterase; 93.1 0.043 1.5E-06 51.2 2.9 23 115-137 9-31 (171)
305 2crv_A IF-2MT, translation ini 93.1 0.25 8.6E-06 42.8 7.4 79 331-417 11-100 (120)
306 1xjc_A MOBB protein homolog; s 93.1 0.052 1.8E-06 50.7 3.3 25 114-138 3-27 (169)
307 3tif_A Uncharacterized ABC tra 93.1 0.044 1.5E-06 54.1 3.0 26 114-139 30-55 (235)
308 2pcj_A ABC transporter, lipopr 93.0 0.048 1.6E-06 53.4 3.2 26 114-139 29-54 (224)
309 1htw_A HI0065; nucleotide-bind 92.9 0.051 1.7E-06 50.2 3.0 24 116-139 34-57 (158)
310 4eun_A Thermoresistant glucoki 92.9 0.058 2E-06 51.5 3.4 24 114-137 28-51 (200)
311 3lw7_A Adenylate kinase relate 92.7 0.058 2E-06 49.5 3.2 20 116-135 2-21 (179)
312 2onk_A Molybdate/tungstate ABC 92.7 0.058 2E-06 53.5 3.2 24 116-139 25-48 (240)
313 2rhm_A Putative kinase; P-loop 92.5 0.065 2.2E-06 50.4 3.3 24 114-137 4-27 (193)
314 3b85_A Phosphate starvation-in 92.5 0.056 1.9E-06 52.3 2.8 23 116-138 23-45 (208)
315 2cbz_A Multidrug resistance-as 92.5 0.06 2E-06 53.2 3.0 26 114-139 30-55 (237)
316 1b0u_A Histidine permease; ABC 92.4 0.061 2.1E-06 54.0 3.1 26 114-139 31-56 (262)
317 2pze_A Cystic fibrosis transme 92.4 0.063 2.1E-06 52.8 3.1 26 114-139 33-58 (229)
318 2f1r_A Molybdopterin-guanine d 92.4 0.036 1.2E-06 51.9 1.2 23 116-138 3-25 (171)
319 3kb2_A SPBC2 prophage-derived 92.4 0.067 2.3E-06 49.2 3.1 22 116-137 2-23 (173)
320 1g6h_A High-affinity branched- 92.4 0.062 2.1E-06 53.8 3.0 26 114-139 32-57 (257)
321 1mv5_A LMRA, multidrug resista 92.4 0.064 2.2E-06 53.2 3.1 25 115-139 28-52 (243)
322 3gfo_A Cobalt import ATP-bindi 92.4 0.063 2.2E-06 54.3 3.1 26 114-139 33-58 (275)
323 4g1u_C Hemin import ATP-bindin 92.3 0.064 2.2E-06 54.0 3.1 26 114-139 36-61 (266)
324 2c95_A Adenylate kinase 1; tra 92.3 0.073 2.5E-06 50.2 3.3 26 112-137 6-31 (196)
325 2ff7_A Alpha-hemolysin translo 92.3 0.065 2.2E-06 53.3 3.0 26 114-139 34-59 (247)
326 2wwf_A Thymidilate kinase, put 92.2 0.1 3.5E-06 49.9 4.3 26 112-137 7-32 (212)
327 1uf9_A TT1252 protein; P-loop, 92.2 0.071 2.4E-06 50.6 3.1 28 111-138 4-31 (203)
328 1g7s_A Translation initiation 92.2 0.46 1.6E-05 53.4 10.2 109 544-659 205-329 (594)
329 1sgw_A Putative ABC transporte 92.2 0.061 2.1E-06 52.3 2.7 24 115-138 35-58 (214)
330 2v54_A DTMP kinase, thymidylat 92.2 0.091 3.1E-06 49.9 3.9 25 114-138 3-27 (204)
331 1ji0_A ABC transporter; ATP bi 92.2 0.068 2.3E-06 52.9 3.0 26 114-139 31-56 (240)
332 3trf_A Shikimate kinase, SK; a 92.2 0.078 2.7E-06 49.6 3.3 23 115-137 5-27 (185)
333 1nn5_A Similar to deoxythymidy 92.2 0.089 3.1E-06 50.4 3.8 26 112-137 6-31 (215)
334 2bdt_A BH3686; alpha-beta prot 92.1 0.071 2.4E-06 50.2 3.0 21 117-137 4-24 (189)
335 2d2e_A SUFC protein; ABC-ATPas 92.1 0.073 2.5E-06 53.0 3.2 25 114-138 28-52 (250)
336 2olj_A Amino acid ABC transpor 92.1 0.071 2.4E-06 53.6 3.1 25 114-138 49-73 (263)
337 1nij_A Hypothetical protein YJ 92.1 0.054 1.9E-06 56.0 2.3 26 113-138 2-27 (318)
338 3vaa_A Shikimate kinase, SK; s 92.1 0.083 2.8E-06 50.3 3.4 25 113-137 23-47 (199)
339 2ghi_A Transport protein; mult 92.0 0.071 2.4E-06 53.4 3.0 25 114-138 45-69 (260)
340 1vpl_A ABC transporter, ATP-bi 92.0 0.074 2.5E-06 53.2 3.1 26 114-139 40-65 (256)
341 1ly1_A Polynucleotide kinase; 92.0 0.075 2.6E-06 49.3 3.0 22 116-137 3-24 (181)
342 3uie_A Adenylyl-sulfate kinase 92.0 0.077 2.6E-06 50.6 3.0 26 113-138 23-48 (200)
343 1knq_A Gluconate kinase; ALFA/ 92.0 0.078 2.7E-06 49.2 3.0 23 115-137 8-30 (175)
344 3aez_A Pantothenate kinase; tr 92.0 0.073 2.5E-06 54.9 3.0 26 113-138 88-113 (312)
345 2qi9_C Vitamin B12 import ATP- 91.9 0.076 2.6E-06 52.9 3.1 25 114-138 25-49 (249)
346 3tr5_A RF-3, peptide chain rel 91.9 0.33 1.1E-05 53.8 8.4 69 585-656 311-380 (528)
347 2eyu_A Twitching motility prot 91.9 0.076 2.6E-06 53.3 3.0 24 115-138 25-48 (261)
348 2orw_A Thymidine kinase; TMTK, 91.9 0.71 2.4E-05 43.4 9.7 43 188-230 76-118 (184)
349 2zu0_C Probable ATP-dependent 91.8 0.083 2.8E-06 53.2 3.2 25 114-138 45-69 (267)
350 1y63_A LMAJ004144AAA protein; 91.8 0.1 3.5E-06 49.1 3.7 26 113-138 8-33 (184)
351 1ukz_A Uridylate kinase; trans 91.8 0.099 3.4E-06 49.8 3.6 26 112-137 12-37 (203)
352 2ihy_A ABC transporter, ATP-bi 91.8 0.081 2.8E-06 53.6 3.1 26 114-139 46-71 (279)
353 2ixe_A Antigen peptide transpo 91.8 0.08 2.7E-06 53.4 3.0 26 114-139 44-69 (271)
354 1ex7_A Guanylate kinase; subst 91.7 0.085 2.9E-06 50.1 3.0 21 118-138 4-24 (186)
355 3lnc_A Guanylate kinase, GMP k 91.7 0.069 2.4E-06 52.2 2.4 25 114-138 26-51 (231)
356 2v9p_A Replication protein E1; 91.7 0.092 3.2E-06 53.9 3.4 25 114-138 125-149 (305)
357 2if2_A Dephospho-COA kinase; a 91.7 0.097 3.3E-06 49.9 3.4 22 116-137 2-23 (204)
358 2yz2_A Putative ABC transporte 91.7 0.083 2.8E-06 53.1 3.0 25 114-138 32-56 (266)
359 2nq2_C Hypothetical ABC transp 91.6 0.085 2.9E-06 52.7 3.0 26 114-139 30-55 (253)
360 2i3b_A HCR-ntpase, human cance 91.6 0.078 2.7E-06 50.5 2.5 22 117-138 3-24 (189)
361 2qt1_A Nicotinamide riboside k 91.5 0.1 3.4E-06 50.0 3.3 25 114-138 20-44 (207)
362 1qhx_A CPT, protein (chloramph 91.5 0.12 3.9E-06 48.0 3.6 23 115-137 3-25 (178)
363 4e22_A Cytidylate kinase; P-lo 91.4 0.12 4E-06 51.5 3.9 24 113-136 25-48 (252)
364 3tqc_A Pantothenate kinase; bi 91.4 0.094 3.2E-06 54.3 3.2 25 113-137 90-114 (321)
365 3cm0_A Adenylate kinase; ATP-b 91.4 0.083 2.9E-06 49.4 2.6 24 114-137 3-26 (186)
366 2plr_A DTMP kinase, probable t 91.3 0.1 3.6E-06 49.7 3.2 24 114-137 3-26 (213)
367 3iij_A Coilin-interacting nucl 91.3 0.11 3.9E-06 48.3 3.4 24 114-137 10-33 (180)
368 3umf_A Adenylate kinase; rossm 91.3 0.11 3.9E-06 50.5 3.5 26 112-137 26-51 (217)
369 1jjv_A Dephospho-COA kinase; P 91.3 0.098 3.3E-06 50.0 3.0 22 116-137 3-24 (206)
370 2jeo_A Uridine-cytidine kinase 91.2 0.098 3.4E-06 51.7 3.0 24 114-137 24-47 (245)
371 4a74_A DNA repair and recombin 91.2 0.1 3.6E-06 50.4 3.1 24 115-138 25-48 (231)
372 1vht_A Dephospho-COA kinase; s 91.1 0.11 3.6E-06 50.3 3.1 24 114-137 3-26 (218)
373 1kht_A Adenylate kinase; phosp 91.1 0.12 4.3E-06 48.2 3.5 23 115-137 3-25 (192)
374 2pjz_A Hypothetical protein ST 91.1 0.11 3.6E-06 52.3 3.1 25 115-139 30-54 (263)
375 3r20_A Cytidylate kinase; stru 91.1 0.12 4.1E-06 50.9 3.4 27 111-137 5-31 (233)
376 1rz3_A Hypothetical protein rb 91.0 0.11 3.9E-06 49.5 3.2 24 114-137 21-44 (201)
377 1odf_A YGR205W, hypothetical 3 91.0 0.11 3.7E-06 53.1 3.1 25 113-137 29-53 (290)
378 2yvu_A Probable adenylyl-sulfa 91.0 0.12 4.3E-06 48.4 3.4 25 113-137 11-35 (186)
379 2dy1_A Elongation factor G; tr 91.0 0.21 7.3E-06 57.0 5.9 99 544-656 261-364 (665)
380 3a4m_A L-seryl-tRNA(SEC) kinas 91.0 0.11 3.7E-06 52.0 3.0 24 114-137 3-26 (260)
381 2ehv_A Hypothetical protein PH 90.9 0.11 3.9E-06 50.8 3.2 24 114-137 29-52 (251)
382 2jaq_A Deoxyguanosine kinase; 90.9 0.12 4E-06 49.0 3.1 21 117-137 2-22 (205)
383 1zd8_A GTP:AMP phosphotransfer 90.9 0.13 4.6E-06 49.9 3.6 25 113-137 5-29 (227)
384 3ec2_A DNA replication protein 90.9 0.095 3.3E-06 48.9 2.4 24 115-138 38-61 (180)
385 2bbs_A Cystic fibrosis transme 90.8 0.12 3.9E-06 52.8 3.1 26 114-139 63-88 (290)
386 1nks_A Adenylate kinase; therm 90.8 0.12 4.1E-06 48.4 3.0 22 116-137 2-23 (194)
387 2cdn_A Adenylate kinase; phosp 90.8 0.16 5.3E-06 48.4 3.9 26 112-137 17-42 (201)
388 1aky_A Adenylate kinase; ATP:A 90.8 0.14 4.8E-06 49.5 3.6 24 114-137 3-26 (220)
389 1tev_A UMP-CMP kinase; ploop, 90.7 0.12 4.1E-06 48.5 3.0 23 115-137 3-25 (196)
390 3fvq_A Fe(3+) IONS import ATP- 90.7 0.13 4.3E-06 54.1 3.3 25 115-139 30-54 (359)
391 2vli_A Antibiotic resistance p 90.6 0.12 3.9E-06 48.2 2.7 24 114-137 4-27 (183)
392 3nh6_A ATP-binding cassette SU 90.6 0.081 2.8E-06 54.4 1.7 25 114-138 79-103 (306)
393 1via_A Shikimate kinase; struc 90.6 0.12 4.1E-06 48.0 2.7 22 116-137 5-26 (175)
394 2kjq_A DNAA-related protein; s 90.6 0.13 4.5E-06 46.7 3.0 25 114-138 35-59 (149)
395 3tui_C Methionine import ATP-b 90.5 0.13 4.5E-06 54.1 3.2 26 114-139 53-78 (366)
396 1zak_A Adenylate kinase; ATP:A 90.5 0.14 4.8E-06 49.6 3.3 24 114-137 4-27 (222)
397 3tlx_A Adenylate kinase 2; str 90.4 0.14 4.9E-06 50.5 3.4 25 113-137 27-51 (243)
398 3bfv_A CAPA1, CAPB2, membrane 90.4 0.39 1.3E-05 48.3 6.6 64 164-228 193-257 (271)
399 1ak2_A Adenylate kinase isoenz 90.4 0.17 5.7E-06 49.6 3.8 27 111-137 12-38 (233)
400 1sq5_A Pantothenate kinase; P- 90.4 0.14 4.7E-06 52.6 3.3 24 114-137 79-102 (308)
401 1z47_A CYSA, putative ABC-tran 90.3 0.14 4.7E-06 53.8 3.2 26 114-139 40-65 (355)
402 2f6r_A COA synthase, bifunctio 90.3 0.2 6.8E-06 50.7 4.3 26 111-136 71-96 (281)
403 2yyz_A Sugar ABC transporter, 90.2 0.14 4.9E-06 53.8 3.2 26 114-139 28-53 (359)
404 2it1_A 362AA long hypothetical 90.1 0.15 5.1E-06 53.7 3.2 26 114-139 28-53 (362)
405 2pt7_A CAG-ALFA; ATPase, prote 90.0 0.13 4.4E-06 53.5 2.7 25 115-139 171-195 (330)
406 3rlf_A Maltose/maltodextrin im 90.0 0.15 5.2E-06 53.9 3.2 26 114-139 28-53 (381)
407 2gza_A Type IV secretion syste 89.9 0.14 4.7E-06 54.0 2.8 24 115-138 175-198 (361)
408 1g29_1 MALK, maltose transport 89.9 0.15 5.3E-06 53.8 3.2 26 114-139 28-53 (372)
409 2bwj_A Adenylate kinase 5; pho 89.9 0.19 6.4E-06 47.4 3.5 24 114-137 11-34 (199)
410 1v43_A Sugar-binding transport 89.9 0.16 5.4E-06 53.7 3.2 26 114-139 36-61 (372)
411 3jvv_A Twitching mobility prot 89.8 0.15 5E-06 53.6 2.9 23 116-138 124-146 (356)
412 1sxj_A Activator 1 95 kDa subu 89.4 1 3.4E-05 49.7 9.5 25 114-138 76-100 (516)
413 2iyv_A Shikimate kinase, SK; t 89.3 0.17 5.8E-06 47.3 2.7 22 116-137 3-24 (184)
414 3fb4_A Adenylate kinase; psych 89.3 0.19 6.5E-06 48.3 3.2 21 117-137 2-22 (216)
415 3kta_A Chromosome segregation 89.3 0.22 7.6E-06 46.3 3.5 23 115-137 26-48 (182)
416 1qf9_A UMP/CMP kinase, protein 89.2 0.22 7.4E-06 46.6 3.4 23 115-137 6-28 (194)
417 1wcv_1 SOJ, segregation protei 89.2 0.93 3.2E-05 44.8 8.3 78 162-241 111-195 (257)
418 1zo1_I IF2, translation initia 89.2 0.98 3.3E-05 49.5 9.0 104 307-418 384-495 (501)
419 1uj2_A Uridine-cytidine kinase 89.1 0.19 6.3E-06 49.9 2.9 25 113-137 20-44 (252)
420 2ewv_A Twitching motility prot 89.1 0.18 6E-06 53.4 2.9 24 115-138 136-159 (372)
421 3b9q_A Chloroplast SRP recepto 89.1 0.19 6.4E-06 51.6 3.0 125 114-242 99-272 (302)
422 1lw7_A Transcriptional regulat 89.1 0.15 5.2E-06 53.6 2.4 24 115-138 170-193 (365)
423 1gvn_B Zeta; postsegregational 89.0 0.2 6.9E-06 50.9 3.2 24 114-137 32-55 (287)
424 2vp4_A Deoxynucleoside kinase; 89.0 0.19 6.6E-06 49.0 3.0 26 113-138 18-43 (230)
425 3gd7_A Fusion complex of cysti 89.0 0.2 6.9E-06 53.2 3.3 25 114-138 46-70 (390)
426 3dl0_A Adenylate kinase; phosp 89.0 0.21 7.1E-06 48.0 3.2 21 117-137 2-22 (216)
427 3d31_A Sulfate/molybdate ABC t 89.0 0.14 4.8E-06 53.6 2.0 25 115-139 26-50 (348)
428 3cio_A ETK, tyrosine-protein k 88.8 0.85 2.9E-05 46.5 7.7 64 164-228 215-279 (299)
429 1gtv_A TMK, thymidylate kinase 88.7 0.11 3.7E-06 49.8 0.9 21 117-137 2-22 (214)
430 2b8t_A Thymidine kinase; deoxy 88.7 0.13 4.5E-06 50.2 1.5 42 188-229 89-130 (223)
431 2pez_A Bifunctional 3'-phospho 88.7 0.22 7.5E-06 46.3 3.0 23 115-137 5-27 (179)
432 2oap_1 GSPE-2, type II secreti 88.6 0.19 6.6E-06 55.4 2.9 24 115-138 260-283 (511)
433 1e6c_A Shikimate kinase; phosp 88.5 0.22 7.7E-06 45.7 2.9 22 116-137 3-24 (173)
434 2pt5_A Shikimate kinase, SK; a 88.5 0.25 8.4E-06 45.2 3.1 21 117-137 2-22 (168)
435 3vqt_A RF-3, peptide chain rel 88.4 0.87 3E-05 50.6 8.1 68 585-655 329-397 (548)
436 2ze6_A Isopentenyl transferase 88.4 0.21 7.3E-06 49.6 2.8 22 116-137 2-23 (253)
437 1a7j_A Phosphoribulokinase; tr 88.2 0.2 6.9E-06 51.0 2.6 25 113-137 3-27 (290)
438 1ixz_A ATP-dependent metallopr 88.2 0.25 8.7E-06 48.8 3.3 22 117-138 51-72 (254)
439 1jbk_A CLPB protein; beta barr 88.2 0.29 9.9E-06 45.2 3.5 25 114-138 42-66 (195)
440 3be4_A Adenylate kinase; malar 88.2 0.27 9.1E-06 47.5 3.3 23 115-137 5-27 (217)
441 1oxx_K GLCV, glucose, ABC tran 88.1 0.14 4.7E-06 53.8 1.2 26 114-139 30-55 (353)
442 2pbr_A DTMP kinase, thymidylat 88.1 0.26 8.9E-06 46.1 3.1 21 117-137 2-22 (195)
443 3la6_A Tyrosine-protein kinase 88.1 1.3 4.4E-05 44.8 8.5 65 164-229 203-268 (286)
444 1p9r_A General secretion pathw 88.1 0.23 7.7E-06 53.4 2.9 23 116-138 168-190 (418)
445 2x8a_A Nuclear valosin-contain 88.1 0.25 8.6E-06 49.8 3.1 22 117-138 46-67 (274)
446 2p5t_B PEZT; postsegregational 88.0 0.18 6.2E-06 50.0 2.1 24 114-137 31-54 (253)
447 1e4v_A Adenylate kinase; trans 88.0 0.29 9.8E-06 47.1 3.4 21 117-137 2-22 (214)
448 2npi_A Protein CLP1; CLP1-PCF1 87.7 0.26 8.9E-06 53.6 3.2 26 114-139 137-162 (460)
449 2w0m_A SSO2452; RECA, SSPF, un 87.6 0.27 9.2E-06 47.4 3.0 24 115-138 23-46 (235)
450 1f2t_A RAD50 ABC-ATPase; DNA d 87.4 0.3 1E-05 44.3 2.9 22 115-136 23-44 (149)
451 3sr0_A Adenylate kinase; phosp 87.4 0.3 1E-05 47.0 3.1 21 117-137 2-22 (206)
452 4a1f_A DNAB helicase, replicat 87.4 1.2 4.1E-05 46.2 7.9 22 116-137 47-68 (338)
453 2og2_A Putative signal recogni 87.4 0.27 9.3E-06 51.6 3.0 24 114-137 156-179 (359)
454 2z0h_A DTMP kinase, thymidylat 87.3 0.33 1.1E-05 45.6 3.3 21 117-137 2-22 (197)
455 1m7g_A Adenylylsulfate kinase; 87.3 0.29 1E-05 46.9 3.0 25 113-137 23-47 (211)
456 1in4_A RUVB, holliday junction 87.3 0.28 9.7E-06 50.8 3.1 24 115-138 51-74 (334)
457 4eaq_A DTMP kinase, thymidylat 87.1 0.32 1.1E-05 47.6 3.2 25 114-138 25-49 (229)
458 3k9g_A PF-32 protein; ssgcid, 87.0 1.1 3.9E-05 44.3 7.3 76 162-240 144-221 (267)
459 1iy2_A ATP-dependent metallopr 86.9 0.34 1.2E-05 48.7 3.3 22 117-138 75-96 (278)
460 1hyq_A MIND, cell division inh 86.8 0.91 3.1E-05 44.8 6.4 65 162-228 110-175 (263)
461 1xx6_A Thymidine kinase; NESG, 86.8 1.2 4.2E-05 42.1 6.9 41 189-229 82-122 (191)
462 3nwj_A ATSK2; P loop, shikimat 86.7 0.32 1.1E-05 48.4 2.9 23 115-137 48-70 (250)
463 1cr0_A DNA primase/helicase; R 86.5 0.33 1.1E-05 49.2 3.1 24 115-138 35-58 (296)
464 3kjh_A CO dehydrogenase/acetyl 86.5 0.57 1.9E-05 45.7 4.7 65 161-227 130-195 (254)
465 1zuh_A Shikimate kinase; alpha 86.5 0.36 1.2E-05 44.3 3.0 24 114-137 6-29 (168)
466 3euj_A Chromosome partition pr 86.4 0.32 1.1E-05 53.0 3.0 22 116-137 30-51 (483)
467 1svm_A Large T antigen; AAA+ f 86.3 0.39 1.3E-05 50.7 3.5 25 113-137 167-191 (377)
468 2xb4_A Adenylate kinase; ATP-b 86.3 0.4 1.4E-05 46.5 3.3 21 117-137 2-22 (223)
469 1p5z_B DCK, deoxycytidine kina 86.3 0.24 8.2E-06 49.4 1.8 28 111-138 20-47 (263)
470 3e2i_A Thymidine kinase; Zn-bi 86.1 1.7 5.6E-05 42.0 7.5 46 189-234 102-147 (219)
471 2obl_A ESCN; ATPase, hydrolase 86.1 0.37 1.3E-05 50.4 3.1 26 114-139 70-95 (347)
472 2cvh_A DNA repair and recombin 86.0 0.44 1.5E-05 45.5 3.4 24 114-137 19-42 (220)
473 1q3t_A Cytidylate kinase; nucl 86.0 0.45 1.5E-05 46.5 3.5 25 113-137 14-38 (236)
474 2w58_A DNAI, primosome compone 85.9 0.42 1.4E-05 45.2 3.3 23 116-138 55-77 (202)
475 1yqt_A RNAse L inhibitor; ATP- 85.9 0.37 1.3E-05 53.5 3.2 26 114-139 46-71 (538)
476 3izy_P Translation initiation 85.9 3 0.0001 46.1 10.4 101 307-415 423-535 (537)
477 1lv7_A FTSH; alpha/beta domain 85.9 0.41 1.4E-05 47.3 3.3 24 115-138 45-68 (257)
478 3ake_A Cytidylate kinase; CMP 85.8 0.42 1.4E-05 45.2 3.2 22 116-137 3-24 (208)
479 2p65_A Hypothetical protein PF 85.7 0.35 1.2E-05 44.5 2.5 25 114-138 42-66 (187)
480 3bos_A Putative DNA replicatio 85.6 0.44 1.5E-05 46.0 3.3 25 114-138 51-75 (242)
481 1n0w_A DNA repair protein RAD5 85.6 0.41 1.4E-05 46.6 3.0 25 114-138 23-47 (243)
482 3b60_A Lipid A export ATP-bind 85.5 0.39 1.3E-05 53.9 3.2 26 114-139 368-393 (582)
483 3ozx_A RNAse L inhibitor; ATP 85.4 0.39 1.3E-05 53.3 3.1 23 116-138 26-48 (538)
484 1g3q_A MIND ATPase, cell divis 85.2 0.85 2.9E-05 44.2 5.2 66 162-229 111-177 (237)
485 3j16_B RLI1P; ribosome recycli 84.9 0.44 1.5E-05 53.7 3.2 24 115-138 103-126 (608)
486 3b5x_A Lipid A export ATP-bind 84.9 0.42 1.4E-05 53.7 3.1 26 114-139 368-393 (582)
487 2yl4_A ATP-binding cassette SU 84.8 0.39 1.3E-05 54.1 2.8 26 114-139 369-394 (595)
488 3qf7_A RAD50; ABC-ATPase, ATPa 84.7 0.44 1.5E-05 50.1 3.0 21 116-136 24-44 (365)
489 1ltq_A Polynucleotide kinase; 84.6 0.46 1.6E-05 48.1 3.0 22 116-137 3-24 (301)
490 2dpy_A FLII, flagellum-specifi 84.6 0.46 1.6E-05 51.3 3.1 25 114-138 156-180 (438)
491 3qf4_B Uncharacterized ABC tra 84.5 0.42 1.4E-05 53.8 2.9 26 114-139 380-405 (598)
492 2oze_A ORF delta'; para, walke 84.3 1.3 4.6E-05 44.6 6.4 66 162-229 154-226 (298)
493 3q9l_A Septum site-determining 84.2 0.79 2.7E-05 45.1 4.4 64 162-227 113-185 (260)
494 3exa_A TRNA delta(2)-isopenten 84.2 0.51 1.8E-05 48.4 3.1 24 115-138 3-26 (322)
495 2vhj_A Ntpase P4, P4; non- hyd 84.0 0.88 3E-05 46.8 4.7 23 116-138 124-146 (331)
496 3pfi_A Holliday junction ATP-d 84.0 2.5 8.5E-05 43.3 8.4 25 114-138 54-78 (338)
497 2grj_A Dephospho-COA kinase; T 84.0 0.55 1.9E-05 44.6 3.0 24 114-137 11-34 (192)
498 3bk7_A ABC transporter ATP-bin 83.9 0.49 1.7E-05 53.3 3.1 25 114-138 116-140 (607)
499 3ozx_A RNAse L inhibitor; ATP 83.9 0.5 1.7E-05 52.5 3.1 24 116-139 295-318 (538)
500 1yqt_A RNAse L inhibitor; ATP- 83.6 0.55 1.9E-05 52.2 3.2 24 116-139 313-336 (538)
No 1
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.6e-96 Score=820.68 Aligned_cols=495 Identities=49% Similarity=0.764 Sum_probs=426.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+++|+|+++||+|||||||+++|++..+...+.+++|+++....+.++++.+++|||||||++|..++.++++.+|+++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46899999999999999999999999888888899999998887777667789999999999999999999999999999
Q ss_pred EEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 193 VVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
|+|++++.++|+.+++.++...++|+++++||+|+++++.+.....+...+...+.+++.++++
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv---------------- 145 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAV---------------- 145 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEEC----------------
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEE----------------
Confidence 9999999999999999999999999999999999987666555555555555555555556666
Q ss_pred HHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEe
Q psy4665 273 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALV 352 (673)
Q Consensus 273 i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V 352 (673)
++||++|.|+++|++.|..+.+.+++..+++.|+.+.|++++.+++.|++++++|
T Consensus 146 -------------------------~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V 200 (537)
T 3izy_P 146 -------------------------HVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAII 200 (537)
T ss_dssp -------------------------CCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEE
T ss_pred -------------------------EEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEE
Confidence 5555555566666666666555556667788999999999999999999999999
Q ss_pred eecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHH--HHH
Q psy4665 353 QRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFD--TYT 427 (673)
Q Consensus 353 ~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~--~~~ 427 (673)
.+|+|++||.+++|..+++||+|+ ++++++|.||++ |+ ++|+++.|. +||+|+.+++++.+.+ .|+
T Consensus 201 ~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~~------V~-i~g~~~~~~--~Gd~l~~~~~~~~a~~~~~~r 271 (537)
T 3izy_P 201 QRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMP------VG-IIGWRDLPS--AGDEILEVESEPRAREVVDWR 271 (537)
T ss_dssp EEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCSTT------CC-CCSSEEEEE--EESSCCSCCSSCCCCCCSCCS
T ss_pred ecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCCE------EE-EECCCCCCC--CCCEEEecCChHHHHHHHHHH
Confidence 999999999999999999999998 578999999999 98 889998877 9999999988854421 122
Q ss_pred HHHHH---hhh----hhc---------------------cccchhHHhhhcc---c---CCCCCCCceeeEEEEeCCCcc
Q psy4665 428 SALCR---LDI----VHY---------------------GVTSTDQWRRYWT---C---STPTRESKHGRIYLIGDVDGS 473 (673)
Q Consensus 428 ~~~~~---~~~----~~~---------------------~~~~~~~~~~~~~---~---~~~~~~~~~~~~iikad~~Gs 473 (673)
..... +.. ++. +++....|++.+. . ...+.+.+.+|+|||||++||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs 351 (537)
T 3izy_P 272 KYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGS 351 (537)
T ss_dssp SSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCCCCCCCBEEEBCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhhhhhhhccchhhcccccceeeEEEEeCCcch
Confidence 11111 100 000 0001112221110 0 023456789999999999999
Q ss_pred HHHHHHHHhhcCC-CceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHH
Q psy4665 474 VEALLDVFDTYTS-ALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVK 552 (673)
Q Consensus 474 leAi~~~l~~~~~-~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~ 552 (673)
+|||.++|.+|++ ++|+++|+|++||+||++||.+|.++||+|+||||+++++++++|++.||+|++|+|||+|+||++
T Consensus 352 ~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~ 431 (537)
T 3izy_P 352 VEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDLQ 431 (537)
T ss_dssp HHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEESSCCBCHHHHHHHHHHTCCCBCSCSSCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHH
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccccccccccc
Q psy4665 553 EEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIK 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~ 632 (673)
+.|+++|+|.++++++|+|+|+++|.++.|+|.++||||+|++|++++|+++||+|+|++||+|+|.||||+|++|+||+
T Consensus 432 ~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~ 511 (537)
T 3izy_P 432 EELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVK 511 (537)
T ss_dssp HHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEE
T ss_pred HHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEc
Confidence 99999999999999999999999999997667899999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcC-CCCCCCCCCEEEEEE
Q psy4665 633 KELECGLRLED-PSIEFEPGDTIVCFV 658 (673)
Q Consensus 633 ~g~ecgi~~~~-~~~~~~~gD~i~~~~ 658 (673)
+|+||||.|+| |+ ||++||+||||+
T Consensus 512 ~g~ecgi~~~~~~~-~~~~gd~ie~~~ 537 (537)
T 3izy_P 512 TGMDCGLSLDEEKI-EFKVGDAIICYE 537 (537)
T ss_dssp TTCEEEEESSSSCS-SCSCCCEEEEEC
T ss_pred CCCEEEEEEcCccc-CCCCCCEEEEeC
Confidence 99999999999 99 999999999996
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.9e-94 Score=797.84 Aligned_cols=495 Identities=40% Similarity=0.621 Sum_probs=415.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+|+|+|+++||+|||||||+++|++..+...+.+|+|+++....+.+ ++..++|||||||++|..++.++++.+|+++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 57899999999999999999999988877777889999988777766 56789999999999999999999999999999
Q ss_pred EEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 193 VVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
|+|+++|.++|+.+++.++...++|+++++||+|+++++.+++.+.+.+.+...+.+++.++++++||++|.
T Consensus 81 VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~-------- 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT-------- 152 (501)
T ss_dssp EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT--------
T ss_pred EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc--------
Confidence 999999999999999999999999999999999998765443333222222222333334556655555554
Q ss_pred HHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEe
Q psy4665 273 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALV 352 (673)
Q Consensus 273 i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V 352 (673)
|+++|++.|....+..++..+++.|+.+.|++++.+++.|++++++|
T Consensus 153 ---------------------------------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V 199 (501)
T 1zo1_I 153 ---------------------------------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLV 199 (501)
T ss_dssp ---------------------------------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEE
T ss_pred ---------------------------------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEE
Confidence 45555554443322334455677889999999999999999999999
Q ss_pred eecEEeeCCEEEeCCcceEEEEec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHH--HHH
Q psy4665 353 QRGTLKKGAIVVAGQAWAKVRSIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFD--TYT 427 (673)
Q Consensus 353 ~~G~Lk~g~~v~~g~~~~kvr~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~--~~~ 427 (673)
.+|+|++||.+++++.+++||+|+ +.++++|.||++ |. +.|+.+.+. +||+++..++++++.+ .|+
T Consensus 200 ~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~~------V~-i~gl~~~~~--~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 200 REGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIP------VE-ILGLSGVPA--AGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSSC------SS-SEEECSCCC--TTEEEEEECSSCTTBCSSCBT
T ss_pred EeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCCc------EE-EeCCCCCCC--CCCEEEecCCHHHHHHHHHHH
Confidence 999999999999999999999987 678999999999 88 789988776 9999999888644311 222
Q ss_pred HHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHH
Q psy4665 428 SALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVE 507 (673)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~ 507 (673)
++..+...+..... ....+ ......+.+.+.+|+|||||++||+|||.++|.++++++++++|++++||+||++||.
T Consensus 271 ~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~ 347 (501)
T 1zo1_I 271 QGKFREVKLARQQK--SKLEN-MFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDAT 347 (501)
T ss_dssp TCCCCSHHHHHHHH--HHHSS-TTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCSSSSSSHHHHST
T ss_pred HHHHHHHHHhhhhh--hcHHH-HHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEEEeccCCCCHHHHH
Confidence 21110000000000 00000 0011234467789999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCeEEEEcCCCCHhHHhHHHHcCCeEEEechhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCc
Q psy4665 508 LATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVP 587 (673)
Q Consensus 508 lA~~~~a~I~~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~ 587 (673)
+|++++|+||||||+++++++++|++.||+|++|||||||+||++++|+++++|.++++++|.|+|+++|+++ +.++
T Consensus 348 ~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~---~~~~ 424 (501)
T 1zo1_I 348 LAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSP---KFGA 424 (501)
T ss_dssp TTCGGGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCC---CSSC
T ss_pred HHHhcCCEEEEecCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecC---CCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 5689
Q ss_pred EEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEEEEEEeeccc
Q psy4665 588 VAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQF 665 (673)
Q Consensus 588 iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~~~~~~~~~~ 665 (673)
||||+|++|++++|+++||+|+|++||+|+|.||||+|++|+||++|+||||.|++|+ ||++||+||||+..+++|+
T Consensus 425 iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~~-~~~~gd~~~~~~~~~~~~~ 501 (501)
T 1zo1_I 425 IAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN-DVRTGDVIEVFEIIEIQRT 501 (501)
T ss_dssp EEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCCT-TCCTTCEEEECCCTTTSCC
T ss_pred EEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEEEEcCcC-CCCCCCEEEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999988874
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.9e-82 Score=716.31 Aligned_cols=494 Identities=26% Similarity=0.384 Sum_probs=404.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec----------C-------CeEEEEEeCCCCCc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK----------S-------GEQVTFLDTPGHAA 175 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~----------~-------~~~i~liDTpG~~~ 175 (673)
.++|+|+++||+|||||||+++|++..+...+.+++|++++...+.+. + ...++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 478999999999999999999999877655555688887766665532 1 12599999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeE
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|..++.++++.+|++|+|+|+++|+++|+.+.|.++...++|+++++||+|+...... ....++
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~----------------~~~~~~ 146 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRV----------------HEGRPF 146 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCC----------------CTTCCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccccccc----------------ccCCch
Confidence 9999999999999999999999999999999999999999999999999999642100 002345
Q ss_pred EEeeccCCCChhhHHH-HHHHHHHHHHhCCCCcccc------cCCceeeeeccccCCCcchhHHHHHHHHHhh---hccc
Q psy4665 256 VPISALTGTNVDNLTE-AIERTKNMLLAQGITVEDL------GGDIQAVPISALTGTNVDNLTEAIVAQAEIM---HLKA 325 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~-~i~~~~~~~~~~~~~~ee~------~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~---~~~~ 325 (673)
++.|+.++.++.+.+. .+.+....+.+.++..+.. ...++++++||++|.|+++|++.|..+.+.+ .+..
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~ 226 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKI 226 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEE
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhcc
Confidence 5667777776655443 3445556666666654422 3456889999999999999999999876532 3455
Q ss_pred CCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcce----EEEEec--------------ccccceec--c
Q psy4665 326 DYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWA----KVRSIS--------------RKTLINTA--L 385 (673)
Q Consensus 326 ~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~----kvr~i~--------------~~~v~~a~--~ 385 (673)
+++.|+.+.|++++.+++.|++++++|++|+|++||.+++++.++ +|+.|+ +.++++|. +
T Consensus 227 ~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~a 306 (594)
T 1g7s_A 227 EEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAA 306 (594)
T ss_dssp CTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSE
T ss_pred ccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCC
Confidence 678999999999999999999999999999999999999887655 777775 23466676 5
Q ss_pred CccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEE
Q psy4665 386 GTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIY 465 (673)
Q Consensus 386 G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 465 (673)
|+. +. +.||++. .+||+|+..+++.++.+....++. + ...+.+.+|+|
T Consensus 307 G~~------v~-~~~l~~~---~~Gd~l~~~~~~~~~~~~~~~~~~----------------~------~~~~~~~~~~~ 354 (594)
T 1g7s_A 307 GIK------IV-APGIDDV---MAGSPLRVVTDPEKVREEILSEIE----------------D------IKIDTDEAGVV 354 (594)
T ss_dssp EEE------EE-CSSCTTB---CTTCEEEECSSHHHHHHHHHHHHH----------------T------TSCBCSSSCCE
T ss_pred CcE------EE-EcccCCC---CCCCEEEecCCHHHHHHHHHHHHH----------------h------cccccccccEE
Confidence 665 55 6677765 379999999987333322111111 0 01235689999
Q ss_pred EEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhc------CCeEEEEcCCCCHhHHhHHHHcCCeEE
Q psy4665 466 LIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLF------NAIIYTFNTTLHPAAKTSAEELGVTVK 539 (673)
Q Consensus 466 ikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~------~a~I~~Fnv~~~~~~~~~a~~~~V~i~ 539 (673)
||||++||+|||.++|.++ +++|++++||+||++||.+|+++ +|+|+||||+++++++++|++.||+|+
T Consensus 355 vkad~~gs~eal~~~l~~~-----~~~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~ 429 (594)
T 1g7s_A 355 VKADTLGSLEAVVKILRDM-----YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLF 429 (594)
T ss_dssp EEESSHHHHHHHHHHHHHT-----TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEE
T ss_pred EEeCCCCCHHHHHHHHHhC-----CCcEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHHHHHHHHcCCeEE
Confidence 9999999999999999996 68999999999999999999999 999999999999999999999999999
Q ss_pred EechhhHHHHHHHHHHhccCCceeEE---EEe--EEEEEe--eeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEE
Q psy4665 540 QFNVIYKLVEDVKEEINAMLPHTYAE---EVL--GEANVL--QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEV 612 (673)
Q Consensus 540 ~~~iIY~l~~~~~~~~~~~~~~~~~~---~~~--g~a~v~--~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~ 612 (673)
+|+|||||+|+++++|+++++|.+++ +++ |++.|+ ++|..+ +++||||+|++|++++|+++|+ |+|.
T Consensus 430 ~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f~~~----~~~i~g~~v~~G~~~~~~~~~~-~~~~- 503 (594)
T 1g7s_A 430 QGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQS----KPAIGGVEVLTGVIRQGYPLMN-DDGE- 503 (594)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEEECS----SSEEEEEEEEEEEEETTCEEEC-TTSC-
T ss_pred ECCHHHHHHHHHHHHhhhccchhhhhhhheeeeeEEEEEecceEEcCC----CCeEEEEEEecCEEecCCeEEe-cCCc-
Confidence 99999999999999999999987543 344 666777 577654 3799999999999999999998 9995
Q ss_pred EEEEeeecccccccccccccccceeEEEEcCC---CCCCCCCCEEEEEEEEeeccccc
Q psy4665 613 LFEGKLESMKHLKEEVTSIKKELECGLRLEDP---SIEFEPGDTIVCFVKNKVPQFTD 667 (673)
Q Consensus 613 i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~---~~~~~~gD~i~~~~~~~~~~~~~ 667 (673)
|+|+|.||||+|++|+||++|+||||.|+|| + ||++||+||+|...+..+.++
T Consensus 504 -~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~-~~~~~d~~~~~~~~~~~~~l~ 559 (594)
T 1g7s_A 504 -TVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK-TIHEGDTLYVDIPENHYHILK 559 (594)
T ss_dssp -EEEEEEEEEETTEEESEEETTCCEEEEEETCCBTT-TBCTTCEEEECCCHHHHHTTT
T ss_pred -EEEEEehhcccCccccccCCCCEEEEEEeCcccCC-CCCCCCEEEEEEEhHHHHHHH
Confidence 9999999999999999999999999999997 7 999999999999988888776
No 4
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=5e-37 Score=266.29 Aligned_cols=113 Identities=44% Similarity=0.930 Sum_probs=106.1
Q ss_pred CceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEE
Q psy4665 560 PHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGL 639 (673)
Q Consensus 560 ~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi 639 (673)
.|.++|+++|+|+|+|+|.+++.++..+||||+|++|++++++++||+|||++||+|+|.||||+|+||+||++|.||||
T Consensus 2 ~~~~~E~v~G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 2 SSGSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGL 81 (120)
T ss_dssp CCSCSSCEEEEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEE
T ss_pred CCCcEEEEEEEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEE
Confidence 36778999999999999999842233459999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCEEEEEEEEeecccccCCCCCC
Q psy4665 640 RLEDPSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673 (673)
Q Consensus 640 ~~~~~~~~~~~gD~i~~~~~~~~~~~~~~~~~~~ 673 (673)
.|++||.||++||+||||+.++++|+++| ||||
T Consensus 82 ~l~~fniDik~GDiIE~ye~~ev~r~l~w-dPgf 114 (120)
T 2crv_A 82 SLDEEKVEFKPGDQVICYEENKVPTKTSW-DPGF 114 (120)
T ss_dssp ECSCTTSCCCTTEEEEEECCSCCCCCCCC-CCCC
T ss_pred EEccCCCCCCCCCEEEEEEEEEEeeEecc-CCCc
Confidence 99999999999999999999999999999 8899
No 5
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=7.1e-35 Score=327.87 Aligned_cols=372 Identities=19% Similarity=0.186 Sum_probs=248.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc----------------------cccccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS----------------------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~----------------------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.|.+||+|+||++||||||+++|+... ...+..+|+|+......+.| +++.++|+||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence 478999999999999999999996311 11234589999988889998 7899999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcC-cccc--
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQG-ITVE-- 247 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~-~~~~-- 247 (673)
|||.+|...+.++++.+|++|+|+||.+|++.||..+|+++.+.++|.++++||||++++++.++.+++.+.. ....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEES
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999998888877641 1110
Q ss_pred --------ccCCce-----eEEEeeccC-----------CCChhhHHHHHHH-------HHHHHHhCC--CCcccc--cC
Q psy4665 248 --------DLGGDI-----QAVPISALT-----------GTNVDNLTEAIER-------TKNMLLAQG--ITVEDL--GG 292 (673)
Q Consensus 248 --------~~~~~~-----~~v~iSA~~-----------g~gv~~l~~~i~~-------~~~~~~~~~--~~~ee~--~~ 292 (673)
.+.+.+ .....++.. ...-..+.+.+.. ....+.+.+ ...+.. ..
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 000000 000000000 0000111111111 111111111 112221 23
Q ss_pred CceeeeeccccCCCcchhHHHHHHHHHhhhcc-------cCCCCCeEEEEEEEEee---cCCcEEEEEEeeecEEeeCCE
Q psy4665 293 DIQAVPISALTGTNVDNLTEAIVAQAEIMHLK-------ADYGGPVEAMIVESKFD---THRGKLATALVQRGTLKKGAI 362 (673)
Q Consensus 293 ~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~-------~~~~~~~~~~V~e~~~~---~~~G~v~~~~V~~G~Lk~g~~ 362 (673)
..|++++||.+|.|+..||+++..+.+.+... .+.+.|+.++||++..+ ++.|+++++||++|+|++|+.
T Consensus 268 ~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~ 347 (548)
T 3vqt_A 268 LTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMR 347 (548)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCE
T ss_pred cceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCE
Confidence 45789999999999999999999986543221 12357899999999877 789999999999999999999
Q ss_pred EEeCCcceEEEE-----ec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhh
Q psy4665 363 VVAGQAWAKVRS-----IS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLD 434 (673)
Q Consensus 363 v~~g~~~~kvr~-----i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~ 434 (673)
|++.....++|. ++ ..++++|.|||+ |+ +.|++++. .||||++.++.....
T Consensus 348 v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdI------va-i~gl~~~~---~GDTl~~~~~~~~~~----------- 406 (548)
T 3vqt_A 348 LKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDI------IG-IPNHGTIK---IGDTFTESKEVLKFV----------- 406 (548)
T ss_dssp EEETTTTEEEECTTCEECCCSSCCSSCEECTTCE------EE-EECSSCCC---TTCEEESSSSCCCBC-----------
T ss_pred EEeeccccccccchhhhhccccccccCEEecCCE------EE-ecCCccCc---cCCEecCCCCccccC-----------
Confidence 998877766664 22 567999999999 88 88988765 599999765421000
Q ss_pred hhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCC
Q psy4665 435 IVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNA 514 (673)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a 514 (673)
......+.+.+-|.+...+..+.+.++|.++..+. .+.+.... .++.
T Consensus 407 -------------------~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed-~~~v~~~~-------------et~e 453 (548)
T 3vqt_A 407 -------------------GIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEG-AVQLFRPL-------------VNND 453 (548)
T ss_dssp -------------------CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTT-SSEEEEES-------------SSCC
T ss_pred -------------------CCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcC-ceeEEEEC-------------CCCc
Confidence 00012356667777777888888888888775432 23332211 2244
Q ss_pred eEEEEcCCCCHhH--HhHHHHcCCeEE
Q psy4665 515 IIYTFNTTLHPAA--KTSAEELGVTVK 539 (673)
Q Consensus 515 ~I~~Fnv~~~~~~--~~~a~~~~V~i~ 539 (673)
.|+++-=.+.-++ .++.++.||.++
T Consensus 454 ~il~g~GeLHLeI~~erL~~ey~vev~ 480 (548)
T 3vqt_A 454 YILGAVGVLQFDVIVARLADEYGVDAV 480 (548)
T ss_dssp CEEEESSTHHHHHHHHHHHHHHCCCEE
T ss_pred EEEEEECHHHHHHHHHHHHHHhCCCEE
Confidence 5555533333333 455666777654
No 6
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=7.8e-33 Score=320.23 Aligned_cols=350 Identities=22% Similarity=0.255 Sum_probs=252.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--cc----------------cccccceeeeEEEEEEEecCC-------eEEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--VV----------------KSEFGGITQHIGAFVVTLKSG-------EQVTF 167 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~~----------------~~~~~g~T~~~~~~~v~~~~~-------~~i~l 167 (673)
.+.++|+|+||+|||||||+++|+... +. ....+++|.......+.+ ++ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 467899999999999999999997531 10 011467788777777776 34 78999
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcC-ccc
Q psy4665 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQG-ITV 246 (673)
Q Consensus 168 iDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~-~~~ 246 (673)
||||||.+|...+.++++.+|++|+|+|++++...++...|+.+...++|+++++||+|+..++..++.+.+.... ...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANP 166 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888877777766541 100
Q ss_pred ----------cccCCceeEEEeecc------CCC-----C------------hhhHHHHHHHHH----HHHHhC-CCCcc
Q psy4665 247 ----------EDLGGDIQAVPISAL------TGT-----N------------VDNLTEAIERTK----NMLLAQ-GITVE 288 (673)
Q Consensus 247 ----------~~~~~~~~~v~iSA~------~g~-----g------------v~~l~~~i~~~~----~~~~~~-~~~~e 288 (673)
..|.+.++.+...+. .|. . ..++++.+.+.. +.++++ .++.+
T Consensus 167 ~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~ 246 (704)
T 2rdo_7 167 VPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246 (704)
T ss_pred eeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Confidence 001011111110000 010 0 123344443332 333332 24444
Q ss_pred ccc----------CCceeeeeccccCCCcchhHHHHHHHHHhhh------------------cccCCCCCeEEEEEEEEe
Q psy4665 289 DLG----------GDIQAVPISALTGTNVDNLTEAIVAQAEIMH------------------LKADYGGPVEAMIVESKF 340 (673)
Q Consensus 289 e~~----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~------------------~~~~~~~~~~~~V~e~~~ 340 (673)
++. ..+|++++||++|.|++.||++|..+.+.+. ..+++++|+.++||+++.
T Consensus 247 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~ 326 (704)
T 2rdo_7 247 EIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIAT 326 (704)
T ss_pred HHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEE
Confidence 432 3357899999999999999999998865332 122467899999999999
Q ss_pred ecCCcEEEEEEeeecEEeeCCEEEeCCcce--EEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCe
Q psy4665 341 DTHRGKLATALVQRGTLKKGAIVVAGQAWA--KVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDV 412 (673)
Q Consensus 341 ~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~--kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~ 412 (673)
+++.|+++++||++|+|++|+.|++.+... +|..++ ..++++|.||++ ++ +.|++++. .|||
T Consensus 327 d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------v~-i~gl~~~~---~GdT 396 (704)
T 2rdo_7 327 DPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDI------AA-AIGLKDVT---TGDT 396 (704)
T ss_pred cCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCE------EE-EeCcccCc---cCCE
Confidence 999999999999999999999999876543 333333 568999999999 88 78988763 6999
Q ss_pred EeecCChhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEee
Q psy4665 413 DGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLD 492 (673)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~ 492 (673)
|+..++.. .. . ......+.+.+.|.+...+..+.|.++|.++..+...+.
T Consensus 397 l~~~~~~~-~l-------~----------------------~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~ 446 (704)
T 2rdo_7 397 LCDPDAPI-IL-------E----------------------RMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFR 446 (704)
T ss_pred EeCCCccc-cc-------C----------------------CCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEE
Confidence 99654310 00 0 001234788899999999999999999999877554443
Q ss_pred ---------EEeeecCCCCh
Q psy4665 493 ---------IVHYGVGQVSA 503 (673)
Q Consensus 493 ---------iv~~~vG~it~ 503 (673)
.+-+|.|.+.-
T Consensus 447 v~~~~etge~il~g~GelhL 466 (704)
T 2rdo_7 447 VWTDEESNQTIIAGMGELHL 466 (704)
T ss_pred EEEcCCCCcEEEEeCCHHHH
Confidence 44577887764
No 7
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=6.5e-33 Score=312.72 Aligned_cols=423 Identities=23% Similarity=0.266 Sum_probs=290.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--c-------------ccccccceeeeEEEEEEEec--C--CeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--V-------------VKSEFGGITQHIGAFVVTLK--S--GEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~-------------~~~~~~g~T~~~~~~~v~~~--~--~~~i~liDTpG~ 173 (673)
.+.++|+++||+|||||||+++|+... + ..+..+|+|.......+.+. + ...++|||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 356899999999999999999997631 1 11224677776655555553 2 257899999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCc
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGD 252 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~ 252 (673)
.+|...+.++++.+|++++|+|+++|.+.|+.++|..+...++|+++|+||+|+++++.++..+.+.+. +.. .
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------P 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC------G
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC------c
Confidence 999999999999999999999999999999999999999999999999999999988777666655543 110 1
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeE
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~ 332 (673)
.+++ ++||++|.|+.+|++.|.... +.+..+++.|+.
T Consensus 158 ~~vi-----------------------------------------~vSAktg~GI~~Lle~I~~~l--p~p~~~~~~pl~ 194 (600)
T 2ywe_A 158 EEAI-----------------------------------------LASAKEGIGIEEILEAIVNRI--PPPKGDPQKPLK 194 (600)
T ss_dssp GGCE-----------------------------------------ECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCE
T ss_pred ccEE-----------------------------------------EEEeecCCCchHHHHHHHHhc--ccccccccCCcc
Confidence 1244 555555555555666555442 223345678999
Q ss_pred EEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcceEE--EEec-----ccccceeccCccccccCcEEEeeeCCCCC
Q psy4665 333 AMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKV--RSIS-----RKTLINTALGTVQRTSGTVKISLGFKINP 405 (673)
Q Consensus 333 ~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~kv--r~i~-----~~~v~~a~~G~~~~~~g~v~~i~gl~~~~ 405 (673)
+.|++++.+++.|++++++|.+|++++||.|.+.++..+. +.+. ..+++++.||++ +.++.|++.+.
T Consensus 195 ~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi------~~v~~gi~~~~ 268 (600)
T 2ywe_A 195 ALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDV------GYIAASIKDVR 268 (600)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCE------EEEESSCCCTT
T ss_pred eeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCce------eeeeccccchh
Confidence 9999999999999999999999999999999887664433 3332 457899999999 77556887777
Q ss_pred CCCCCCeEeecCChhh-HHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhc
Q psy4665 406 FCPSGDVDGSVEALLD-VFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTY 484 (673)
Q Consensus 406 ~~~~Gd~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~ 484 (673)
.++.||+++..+++.. .. . ......+.+...+.....+..+.|.++|.++
T Consensus 269 ~~~~GDtl~~~~~~~~~~l--------------------~---------~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL 319 (600)
T 2ywe_A 269 DIRIGDTITHAKNPTKEPV--------------------P---------GFQPAKPMVYAGIYPAEDTTYEELRDALEKY 319 (600)
T ss_dssp SSCTTCEEEESSSCCSSCC--------------------S---------CCCCCCCCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred hccCCCEEEeCCCcccccc--------------------C---------CCCCCCcEEEEEeeccccccHHHHHHHHHHH
Confidence 7788999998765310 00 0 0112346788888888899999999999999
Q ss_pred CCCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhH------HhHHHHcCCeEEEec--hhhHHH-H-HHHHH
Q psy4665 485 TSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAA------KTSAEELGVTVKQFN--VIYKLV-E-DVKEE 554 (673)
Q Consensus 485 ~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~------~~~a~~~~V~i~~~~--iIY~l~-~-~~~~~ 554 (673)
..+...+.+- ..++.+++.||.+...-.. ..+.++.|+.+.... |+|+-- . +-+ +
T Consensus 320 ~~eD~sl~~~--------------~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~yreti~~~g~-~ 384 (600)
T 2ywe_A 320 AINDAAIVYE--------------PESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDE-V 384 (600)
T ss_dssp HTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECEEEEETTCSS-C
T ss_pred hhhCCEEEEE--------------ECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEEEEEecCCCc-E
Confidence 8766666553 1455678888887654443 344455699998877 899741 1 000 0
Q ss_pred H----hccCCce-----eEEEEeEEEEE--eeeeEec---C-CCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeee
Q psy4665 555 I----NAMLPHT-----YAEEVLGEANV--LQMFLIT---D-GKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLE 619 (673)
Q Consensus 555 ~----~~~~~~~-----~~~~~~g~a~v--~~~f~~~---~-~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~ 619 (673)
+ -..+|.. ...+++=+++| -+-|.=. . +++.+.+.|+....| + .. .+.|+-...
T Consensus 385 ~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~----~-~~------~i~~~~P~~ 453 (600)
T 2ywe_A 385 IEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP----N-TV------YLEYEMPLS 453 (600)
T ss_dssp EEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET----T-EE------EEEEEEEHH
T ss_pred EEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC----C-EE------EEEEEEcHH
Confidence 0 0011211 23333333332 2222100 0 245678888887554 1 11 344667888
Q ss_pred cc-cccccccccccccc-eeEEEEcCCC
Q psy4665 620 SM-KHLKEEVTSIKKEL-ECGLRLEDPS 645 (673)
Q Consensus 620 sl-~~~k~~v~~~~~g~-ecgi~~~~~~ 645 (673)
.| ..+..+.+++.+|. .+-..|.+|.
T Consensus 454 e~~~~~~~~L~s~T~G~g~~~~~f~~y~ 481 (600)
T 2ywe_A 454 EIIVDFHDKIKSISRGFASYDYEFIGYR 481 (600)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred HHHhhHHHhhhhcCCCeEEEEEEeccce
Confidence 88 89999999999998 4777777766
No 8
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4.3e-33 Score=311.76 Aligned_cols=377 Identities=18% Similarity=0.139 Sum_probs=256.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------------------c----ccccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------------------V----VKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------------------~----~~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.+.++|+|+||+|||||||+++|+... . .....+|+|.......+.+ .+..++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence 456899999999999999999996211 1 1122367888777777877 6889999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Cccccc-
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVED- 248 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~- 248 (673)
|||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+++..+..+.+.+. +.....
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 999999999999999999999999999999999999999999999999999999999887776665555432 221100
Q ss_pred ---------cCCce-----eEEEeeccCC-----------CChhhHHHHHHHHHHHHHhCC---------CCccc--ccC
Q psy4665 249 ---------LGGDI-----QAVPISALTG-----------TNVDNLTEAIERTKNMLLAQG---------ITVED--LGG 292 (673)
Q Consensus 249 ---------~~~~~-----~~v~iSA~~g-----------~gv~~l~~~i~~~~~~~~~~~---------~~~ee--~~~ 292 (673)
|.+-+ ..+......+ ..-..+.+.+.+..+.++++. +..+. -..
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 00000 0000000000 011123333333333333221 11111 123
Q ss_pred CceeeeeccccCCCcchhHHHHHHHHHhhhccc-------CCCCCeEEEEEEEEe--ec-CCcEEEEEEeeecEEeeCCE
Q psy4665 293 DIQAVPISALTGTNVDNLTEAIVAQAEIMHLKA-------DYGGPVEAMIVESKF--DT-HRGKLATALVQRGTLKKGAI 362 (673)
Q Consensus 293 ~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~-------~~~~~~~~~V~e~~~--~~-~~G~v~~~~V~~G~Lk~g~~ 362 (673)
.+|+|++||++|.|+++|+++|..+.+.+.... ..+.|+.++||++.. |+ ++|+++++||++|+|++|+.
T Consensus 250 ~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~ 329 (528)
T 3tr5_A 250 LTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMK 329 (528)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEE
T ss_pred eeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCE
Confidence 347899999999999999999998865332211 125799999999985 78 99999999999999999999
Q ss_pred EEeCCcceEEEE--ec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhh
Q psy4665 363 VVAGQAWAKVRS--IS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLD 434 (673)
Q Consensus 363 v~~g~~~~kvr~--i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~ 434 (673)
+++.+...++|. ++ ..++++|.|||+ ++ +.+++++. .||||+..+.. . |
T Consensus 330 v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI------~~-~~~l~~~~---~GDtl~~~~~~-~----~-------- 386 (528)
T 3tr5_A 330 AYHVRLKKEIQINNALTFMAGKRENAEEAWPGDI------IG-LHNHGTIQ---IGDTFTQGERF-K----F-------- 386 (528)
T ss_dssp EEETTTTEEEEESSCBCCBTTCSSCCSEECTTCE------EE-EEESSSCC---TTCEEESSCCC-C----B--------
T ss_pred EEecCCCceEEEeeeEEEeCCCeeECCEECCCCE------EE-EcCCCCCc---cCCEEcCCCCc-c----c--------
Confidence 999887766655 32 567999999999 88 88887755 59999973221 0 0
Q ss_pred hhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCC
Q psy4665 435 IVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNA 514 (673)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a 514 (673)
.. .....+.+..-|.....+..+.+.++|.++..+.. ..+..- ..++.
T Consensus 387 ----~~--------------~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~-~~~~~~-------------~~~~~ 434 (528)
T 3tr5_A 387 ----TG--------------IPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGA-TQLFRP-------------LDSNE 434 (528)
T ss_dssp ----CC--------------CEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-CEEEEE-------------TTCCC
T ss_pred ----CC--------------CCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCC-eEEEEc-------------CCCCC
Confidence 00 00112456666777888888889999988876442 333321 12366
Q ss_pred eEEEEcCCCCHhH--HhHHHHcCCeEEEechhh
Q psy4665 515 IIYTFNTTLHPAA--KTSAEELGVTVKQFNVIY 545 (673)
Q Consensus 515 ~I~~Fnv~~~~~~--~~~a~~~~V~i~~~~iIY 545 (673)
+|+++==.+.-++ ..+.++.||.+.....-|
T Consensus 435 ~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v 467 (528)
T 3tr5_A 435 LILGAVGLLQFDVVAYRLENEYNVKCVYESVNV 467 (528)
T ss_dssp EEEEESSTHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred EEEEEEcHHHHHHHHHHHHHHhCcEEEEecCce
Confidence 7777654444444 345556677776654433
No 9
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3e-33 Score=323.31 Aligned_cols=347 Identities=23% Similarity=0.233 Sum_probs=223.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc--------c----------cccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV--------V----------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~--------~----------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|||||||+++|+.... . ....+++|+......+.+ ++..++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCcc
Confidence 4578999999999999999999984210 0 011457787777777777 67899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCcee
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+++++||+|+..++..+..+.+.+..-. .....
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~----~~~~~ 164 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGA----RPVVM 164 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC----CEEEC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCC----Cccce
Confidence 99999999999999999999999999999999999999999999999999999988887777777664210 00123
Q ss_pred EEEeeccC--------------------CCC---------h--------hhHHHHHH----HHHHHHHhC-CCCccccc-
Q psy4665 255 AVPISALT--------------------GTN---------V--------DNLTEAIE----RTKNMLLAQ-GITVEDLG- 291 (673)
Q Consensus 255 ~v~iSA~~--------------------g~g---------v--------~~l~~~i~----~~~~~~~~~-~~~~ee~~- 291 (673)
.+|+|+.. |.. + +++++.+. +..+.++++ .++.+++.
T Consensus 165 ~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~ 244 (691)
T 1dar_A 165 QLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA 244 (691)
T ss_dssp EEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred eccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHH
Confidence 44555411 110 0 12222221 122333332 34444432
Q ss_pred ---------CCceeeeeccccCCCcchhHHHHHHHHHhhhc----------------ccCCCCCeEEEEEEEEeecCCcE
Q psy4665 292 ---------GDIQAVPISALTGTNVDNLTEAIVAQAEIMHL----------------KADYGGPVEAMIVESKFDTHRGK 346 (673)
Q Consensus 292 ---------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~----------------~~~~~~~~~~~V~e~~~~~~~G~ 346 (673)
..+|++++||++|.|++.||++|..+.+.+.. .+++++|+.++||++..+++.|+
T Consensus 245 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 245 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 23578999999999999999999998654321 12467899999999999999999
Q ss_pred EEEEEeeecEEeeCCEEEeCCcceEEE-----Eec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCC
Q psy4665 347 LATALVQRGTLKKGAIVVAGQAWAKVR-----SIS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 347 v~~~~V~~G~Lk~g~~v~~g~~~~kvr-----~i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
++++||++|+|++|+.|++.+...+.+ .++ ..++++|.||++ ++ +.|++++. .||||+..++
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~Gdtl~~~~~ 394 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDL------GA-VVGLKETI---TGDTLVGEDA 394 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCE------EE-EECCSSCC---TTCEEEETTC
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCE------EE-EeCcccCc---cCCEEecCCC
Confidence 999999999999999999876543333 344 568999999999 88 78998765 5999997554
Q ss_pred hhhHHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEe-------
Q psy4665 419 LLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRL------- 491 (673)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i------- 491 (673)
.......+ ....+.+.+.|.+...+..+.|.++|.++..+...+
T Consensus 395 ~~~~l~~~-----------------------------~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~e 445 (691)
T 1dar_A 395 PRVILESI-----------------------------EVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPE 445 (691)
T ss_dssp CCCBCC-------------------------------------------------------------CCCCSCEEEC---
T ss_pred cccccCCC-----------------------------CCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCC
Confidence 20000000 011256666677777777778888887776643322
Q ss_pred --eEEeeecCCCCh
Q psy4665 492 --DIVHYGVGQVSA 503 (673)
Q Consensus 492 --~iv~~~vG~it~ 503 (673)
+.+-+|.|.+.-
T Consensus 446 t~e~i~~g~Gelhl 459 (691)
T 1dar_A 446 TGQTIISGMGELHL 459 (691)
T ss_dssp --CEEEEESCCC--
T ss_pred CCcEEEEeCCHHHH
Confidence 345567777763
No 10
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3e-33 Score=325.00 Aligned_cols=297 Identities=26% Similarity=0.286 Sum_probs=212.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--------c----------ccccccceeeeEEEEEEEec------CCeEEEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--------V----------VKSEFGGITQHIGAFVVTLK------SGEQVTFL 168 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--------~----------~~~~~~g~T~~~~~~~v~~~------~~~~i~li 168 (673)
.+.+||+|+||.+||||||+++|+... + ..+..+|+|+......+.|. +++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 467899999999999999999996321 1 12345899998888888874 25789999
Q ss_pred eCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Ccccc
Q psy4665 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVE 247 (673)
Q Consensus 169 DTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~ 247 (673)
|||||.+|.....++++.+|++|+|||+.+|++.||..+|+++...++|.++++||||+..++.....+++... +....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPV 170 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEE
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999988888777653 11100
Q ss_pred ----------ccCC------ceeEEEeeccCCCC------hhhHH-----------HHHH----HHHHHHHhC-CCCccc
Q psy4665 248 ----------DLGG------DIQAVPISALTGTN------VDNLT-----------EAIE----RTKNMLLAQ-GITVED 289 (673)
Q Consensus 248 ----------~~~~------~~~~v~iSA~~g~g------v~~l~-----------~~i~----~~~~~~~~~-~~~~ee 289 (673)
.+.+ ...+..-+...|.. -.++. +.+. ...+.++++ .++.++
T Consensus 171 ~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~ 250 (709)
T 4fn5_A 171 PVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAE 250 (709)
T ss_dssp ESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHH
T ss_pred eeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHH
Confidence 0000 00111111111111 11111 1111 122233332 244333
Q ss_pred c----------cCCceeeeeccccCCCcchhHHHHHHHHHhhh------------------cccCCCCCeEEEEEEEEee
Q psy4665 290 L----------GGDIQAVPISALTGTNVDNLTEAIVAQAEIMH------------------LKADYGGPVEAMIVESKFD 341 (673)
Q Consensus 290 ~----------~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~------------------~~~~~~~~~~~~V~e~~~~ 341 (673)
+ ....|++++||.++.|+..||+++..+.+.+. ..+++++|+.++||++..+
T Consensus 251 ~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d 330 (709)
T 4fn5_A 251 IKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATD 330 (709)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCB
T ss_pred HHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecc
Confidence 2 23457889999999999999999999865331 1356778999999999999
Q ss_pred cCCcEEEEEEeeecEEeeCCEEEeCCcceE--EEE---ec---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeE
Q psy4665 342 THRGKLATALVQRGTLKKGAIVVAGQAWAK--VRS---IS---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVD 413 (673)
Q Consensus 342 ~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~k--vr~---i~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l 413 (673)
++.|+++++||++|+|++|+.|++.....+ +.. ++ ..++++|.||++ |+ +.|++++. .|||+
T Consensus 331 ~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------v~-i~Gl~~~~---~gdTl 400 (709)
T 4fn5_A 331 PFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDI------AA-LIGMKDVT---TGDTL 400 (709)
T ss_dssp TTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCE------EE-ECSCSSCC---TTCEE
T ss_pred cCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCe------ee-ecCCCcCc---cCCEe
Confidence 999999999999999999999987654333 222 33 568999999999 88 88988654 69999
Q ss_pred eecCCh
Q psy4665 414 GSVEAL 419 (673)
Q Consensus 414 ~~~~~~ 419 (673)
+..+++
T Consensus 401 ~~~~~~ 406 (709)
T 4fn5_A 401 CSIEKP 406 (709)
T ss_dssp ECSSSC
T ss_pred cCCCcc
Confidence 976553
No 11
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.4e-32 Score=307.59 Aligned_cols=420 Identities=23% Similarity=0.259 Sum_probs=278.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc--c-------------ccccccceeeeEEEEEEEec--C--CeEEEEEeCCCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS--V-------------VKSEFGGITQHIGAFVVTLK--S--GEQVTFLDTPGHA 174 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~--~-------------~~~~~~g~T~~~~~~~v~~~--~--~~~i~liDTpG~~ 174 (673)
+.++|+|+||+|||||||+++|+... + .....+|+|.......+.+. + +..++|||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999997632 1 11224678887766666663 2 3689999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCce
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGDI 253 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~ 253 (673)
+|...+.++++.+|++++|+|+++|...|+.+.|..+...++|+++|+||+|+++++.++..+.+.+. +.. ..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------AT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC------CT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999999999999999999999999988776665555443 110 01
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEE
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEA 333 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~ 333 (673)
+++ ++||++|.|+++|++.|.... +.+..+++.|+.+
T Consensus 157 ~vi-----------------------------------------~vSAktg~GI~~Ll~~I~~~l--p~p~~~~~~p~~a 193 (599)
T 3cb4_D 157 DAV-----------------------------------------RCSAKTGVGVQDVLERLVRDI--PPPEGDPEGPLQA 193 (599)
T ss_dssp TCE-----------------------------------------EECTTTCTTHHHHHHHHHHHS--CCCCCCTTSCCEE
T ss_pred eEE-----------------------------------------EeecccCCCchhHHHHHhhcC--CCccccccCCcee
Confidence 244 555555555555555555442 2233456789999
Q ss_pred EEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCcce--EEEEec-----ccccceeccCccccccCcEEEeeeCCCCCC
Q psy4665 334 MIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWA--KVRSIS-----RKTLINTALGTVQRTSGTVKISLGFKINPF 406 (673)
Q Consensus 334 ~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~~~--kvr~i~-----~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~ 406 (673)
.|++++.+++.|++++++|.+|+|++||.+.+.++.. ++..+. +.+++++.||++ +.++.|++.+..
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi------~~~~~gi~~~~~ 267 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEV------GWLVCAIKDIHG 267 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCE------EEEECCCSSGGG
T ss_pred eeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCe------eEeecccccccc
Confidence 9999999999999999999999999999998766543 333332 467899999999 775568776666
Q ss_pred CCCCCeEeecCChhh-HHHHHHHHHHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcC
Q psy4665 407 CPSGDVDGSVEALLD-VFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYT 485 (673)
Q Consensus 407 ~~~Gd~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~ 485 (673)
+..||+++..+++.. .. .. -....+.+...+.....+..+.+.++|.++.
T Consensus 268 ~~~GDtl~~~~~~~~~~l--------------------~~---------~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~ 318 (599)
T 3cb4_D 268 APVGDTLTLARNPAEKAL--------------------PG---------FKKVKPQVYAGLFPVSSDDYEAFRDALGKLS 318 (599)
T ss_dssp SCTTCEEEESSSCCSSCC--------------------TT---------CCCCCCCEEEEEEESSGGGHHHHHHHHHHHH
T ss_pred CccCCEeeecCCcccccc--------------------cc---------ccCCCcceEEEEEecCccCHHHHHHHHHHHH
Confidence 778999998765310 00 00 0123456667777777788999999999998
Q ss_pred CCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhH-----H-hHHHHcCCeEEEec--hhhHHHHHHHHH--H
Q psy4665 486 SALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAA-----K-TSAEELGVTVKQFN--VIYKLVEDVKEE--I 555 (673)
Q Consensus 486 ~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~-----~-~~a~~~~V~i~~~~--iIY~l~~~~~~~--~ 555 (673)
.+...+.+- ..++.+++.+|.+..--.. . .+-++.|+.+.... |+|+-- +++- +
T Consensus 319 ~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yret--i~~g~~~ 382 (599)
T 3cb4_D 319 LNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVE--TTSREVI 382 (599)
T ss_dssp TTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEEE--ESSSCEE
T ss_pred hhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEEE--ecCCceE
Confidence 766665543 2455678888887654442 2 34445588888876 888631 0000 0
Q ss_pred ----hccCCce----eEEEEeEEEE--EeeeeEec----CCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecc
Q psy4665 556 ----NAMLPHT----YAEEVLGEAN--VLQMFLIT----DGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESM 621 (673)
Q Consensus 556 ----~~~~~~~----~~~~~~g~a~--v~~~f~~~----~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl 621 (673)
-..+|+. ...+++-+++ |-+-|.=. -+++.+.+.|..-..|. . .+.|+-....|
T Consensus 383 ~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~------~------~i~~~~P~~e~ 450 (599)
T 3cb4_D 383 YVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQ------V------ALTYEIPMAEV 450 (599)
T ss_dssp EESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTE------E------EEEEEEEHHHH
T ss_pred EecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCe------E------EEEEEecHHHH
Confidence 0012221 2333333332 33322100 02356677777654321 1 23355577788
Q ss_pred -cccccccccccccc-eeEEEEcCCC
Q psy4665 622 -KHLKEEVTSIKKEL-ECGLRLEDPS 645 (673)
Q Consensus 622 -~~~k~~v~~~~~g~-ecgi~~~~~~ 645 (673)
..+..+.+++.+|. ..-..|.+|.
T Consensus 451 ~~~~~~~l~s~T~G~~~~~~~~~~y~ 476 (599)
T 3cb4_D 451 VLDFFDRLKSTSRGYASLDYNFKRFQ 476 (599)
T ss_dssp HTTTHHHHHHHTTSCCEEEEEEEEEE
T ss_pred HHHHHHhhhhcCCcEEEEEEEecCce
Confidence 78889999999887 4556666655
No 12
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.5e-33 Score=305.00 Aligned_cols=275 Identities=26% Similarity=0.325 Sum_probs=207.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~ 161 (673)
...++|+++||+|+|||||+++|++.. ......+|+|.+.....+.+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 456899999999999999999995431 11223478999998888887 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCCCCcH-
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKPAADI- 232 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~- 232 (673)
+..++|||||||++|...+..+++.+|+++||+|+++|.+ .|+.+++..+...++| +|+++||||+...+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 7899999999999999999999999999999999999886 6999999999999999 999999999965432
Q ss_pred -H---HHHHHHHHcCccccccC----CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccC
Q psy4665 233 -E---RTKNMLLAQGITVEDLG----GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTG 304 (673)
Q Consensus 233 -~---~~~~~l~~~~~~~~~~~----~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g 304 (673)
. ...+.+... +..++ ..++++++||++|.|++++.+ ...|++|
T Consensus 174 ~~~~~~i~~~~~~~---l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--------------------------~~~w~~g 224 (439)
T 3j2k_7 174 NERYEECKEKLVPF---LKKVGFNPKKDIHFMPCSGLTGANLKEQSD--------------------------FCPWYIG 224 (439)
T ss_pred HHHHHHHHHHHHHH---HHHhcccccCCeeEEEeeccCCcccccccc--------------------------cccccCc
Confidence 2 222222211 11111 147899999999999988754 2234454
Q ss_pred CCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--cccc
Q psy4665 305 TNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTL 380 (673)
Q Consensus 305 ~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v 380 (673)
. .|++.|... +......+.|++..|.+++. +.|+++.++|.+|++++||.|++++. ..+|++|+ +.++
T Consensus 225 ~---~L~~~l~~i---~~~~~~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~ 296 (439)
T 3j2k_7 225 L---PFIPYLDNL---PNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTET 296 (439)
T ss_pred h---HHHHHHHhC---CCCccCCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEc
Confidence 3 344444332 22344567899999999875 67999999999999999999987765 46788877 8899
Q ss_pred ceeccCccccccCcEEE-eeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHH
Q psy4665 381 INTALGTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCR 432 (673)
Q Consensus 381 ~~a~~G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~ 432 (673)
++|.||+. |++ +.|++ ...+++||+++..++++.....|.+++..
T Consensus 297 ~~a~aG~~------v~~~l~gi~-~~~i~rG~vl~~~~~~~~~~~~f~a~v~~ 342 (439)
T 3j2k_7 297 DFVAPGEN------LKIRLKGIE-EEEILPGFILCDPSNLCHSGRTFDVQIVI 342 (439)
T ss_pred CEecCCCc------ceEEEeccc-hhhcCCcEEecCCCCCCceeeEEEEEEEE
Confidence 99999999 874 33444 24567899999987765554455554443
No 13
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.8e-32 Score=314.20 Aligned_cols=290 Identities=26% Similarity=0.304 Sum_probs=214.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC--ccc----------------cccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT--SVV----------------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~--~~~----------------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|||||||+++|+.. .+. ....+++|.......+.+ ++..++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 45689999999999999999999842 110 011357777776677777 67899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-CccccccCCce
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDLGGDI 253 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~~ 253 (673)
+|...+.++++.+|++++|+|++++...++...|..+...++|+++|+||+|+..++..+..+.+... +.. ...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~-----~~~ 161 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQAN-----AAP 161 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCC-----EEE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCC-----cee
Confidence 99999999999999999999999999999999999999999999999999999988777766666553 111 012
Q ss_pred eEEEeeccCC-----------------C-C-------h------------hhHHHHHHH----HHHHHHhC-CCCccccc
Q psy4665 254 QAVPISALTG-----------------T-N-------V------------DNLTEAIER----TKNMLLAQ-GITVEDLG 291 (673)
Q Consensus 254 ~~v~iSA~~g-----------------~-g-------v------------~~l~~~i~~----~~~~~~~~-~~~~ee~~ 291 (673)
..+|+|+..+ . + + +++++.+.+ ..+.++++ .++.+++.
T Consensus 162 ~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 162 IQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp SEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred EEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 3455554110 0 0 0 122222221 23333432 34544432
Q ss_pred ----------CCceeeeeccccCCCcchhHHHHHHHHHhhhc------------------ccCCCCCeEEEEEEEEeecC
Q psy4665 292 ----------GDIQAVPISALTGTNVDNLTEAIVAQAEIMHL------------------KADYGGPVEAMIVESKFDTH 343 (673)
Q Consensus 292 ----------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~------------------~~~~~~~~~~~V~e~~~~~~ 343 (673)
..+|++++||++|.|++.||++|..+.+.+.. .+++++|+.++||++..+++
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~ 321 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPY 321 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETT
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCC
Confidence 23578999999999999999999998754422 12467899999999999999
Q ss_pred CcEEEEEEeeecEEeeCCEEEeCCcceEEEE--e---c---ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEee
Q psy4665 344 RGKLATALVQRGTLKKGAIVVAGQAWAKVRS--I---S---RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGS 415 (673)
Q Consensus 344 ~G~v~~~~V~~G~Lk~g~~v~~g~~~~kvr~--i---~---~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~ 415 (673)
.|+++++||++|+|++|+.|++.....+.+. + + ..++++|.||++ ++ +.|++++. .||||+.
T Consensus 322 ~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI------~~-i~gl~~~~---~GdTl~~ 391 (693)
T 2xex_A 322 VGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI------AA-AVGLKDTG---TGDTLCG 391 (693)
T ss_dssp TEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCE------EE-EESCSSCC---TTCEEEE
T ss_pred CceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCE------EE-EeCcccCc---cCCEEec
Confidence 9999999999999999999998765544333 3 3 467999999999 88 78988754 5999997
Q ss_pred cCC
Q psy4665 416 VEA 418 (673)
Q Consensus 416 ~~~ 418 (673)
.++
T Consensus 392 ~~~ 394 (693)
T 2xex_A 392 EKN 394 (693)
T ss_dssp TTC
T ss_pred CCC
Confidence 553
No 14
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1e-34 Score=333.06 Aligned_cols=290 Identities=21% Similarity=0.226 Sum_probs=214.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc--------c----------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS--------V----------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~--------~----------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~ 175 (673)
|.+||+|+||++||||||+++|+... + ..+..+|+|+......+.| ++++++|+|||||.+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~D 79 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHH
Confidence 57899999999999999999996421 1 1123479999888888888 688999999999999
Q ss_pred chhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeE
Q psy4665 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQA 255 (673)
Q Consensus 176 f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (673)
|...+.++++.+|++|+|+||.+|++.||..+|+++...++|.|+++||||++.++.....+++.+......-+......
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEe
Confidence 99999999999999999999999999999999999999999999999999999999988888877642110000011111
Q ss_pred EEeeccCCCChhhHHHHHHHH----HHHHHhCC-CCcccc----------cCCceeeeeccccCCCcchhHHHHHHHHHh
Q psy4665 256 VPISALTGTNVDNLTEAIERT----KNMLLAQG-ITVEDL----------GGDIQAVPISALTGTNVDNLTEAIVAQAEI 320 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~----~~~~~~~~-~~~ee~----------~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~ 320 (673)
++-.+.....-.+..+.+.+. .+.++++. ++..++ ....|++++||++|.|++.||+++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p- 238 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY- 238 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC-
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc-
Confidence 111122222223444444443 34444332 333322 23457889999999999999999987643
Q ss_pred hhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-ceEEEEec------ccccceeccCccccccC
Q psy4665 321 MHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-WAKVRSIS------RKTLINTALGTVQRTSG 393 (673)
Q Consensus 321 ~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-~~kvr~i~------~~~v~~a~~G~~~~~~g 393 (673)
.+..+.+.|+.+.||++..+++.|+++++||++|+|++|+.+.+... ..++..++ ..++++|.||++
T Consensus 239 -~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdI----- 312 (638)
T 3j25_A 239 -SSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEI----- 312 (638)
T ss_dssp -CSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCC-----
T ss_pred -CcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceE-----
Confidence 33445678899999999999999999999999999999999865443 23333333 457899999999
Q ss_pred cEEEeeeCCCCCCCCCCCeEeecC
Q psy4665 394 TVKISLGFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 394 ~v~~i~gl~~~~~~~~Gd~l~~~~ 417 (673)
++ +.| ..+ ..|+++++..
T Consensus 313 -v~-i~g-~~~---~~~~tl~d~~ 330 (638)
T 3j25_A 313 -VI-LQN-EFL---KLNSVLGDTK 330 (638)
T ss_dssp -SC-CCS-SSC---SSEECSSSSS
T ss_pred -EE-Eec-ccc---ccCceecCCC
Confidence 77 555 222 2466665443
No 15
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.98 E-value=3.8e-31 Score=296.30 Aligned_cols=371 Identities=18% Similarity=0.139 Sum_probs=241.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc----------------------cccccceeeeEEEEEEEecCCeEEEEEeC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV----------------------KSEFGGITQHIGAFVVTLKSGEQVTFLDT 170 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~----------------------~~~~~g~T~~~~~~~v~~~~~~~i~liDT 170 (673)
.+.++|+++||+|||||||+++|+..... ....+|+|.......+.+ ++..++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 35689999999999999999999863210 012356666666666766 6889999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHc-Ccccccc
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ-GITVEDL 249 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~-~~~~~~~ 249 (673)
|||++|...+.++++.+|++|+|+|++++...++.+++..+...++|+++++||+|+.+++..+..+.+.+. +.....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~- 168 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAP- 168 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEE-
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccc-
Confidence 999999999999999999999999999999999999999998899999999999999887765555555443 221100
Q ss_pred CCceeEEEeeccCCCChhhHH------------------------------HHHHH-HHHHHHhC---------CCCccc
Q psy4665 250 GGDIQAVPISALTGTNVDNLT------------------------------EAIER-TKNMLLAQ---------GITVED 289 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~------------------------------~~i~~-~~~~~~~~---------~~~~ee 289 (673)
..+...|+.++.|+.+++ +.+.+ ..+.+.++ ....+.
T Consensus 169 ---~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~ 245 (529)
T 2h5e_A 169 ---ITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKEL 245 (529)
T ss_dssp ---SEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ---eecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHH
Confidence 111113555444443321 11111 11111111 111111
Q ss_pred c--cCCceeeeeccccCCCcchhHHHHHHHHHhhhccc------C-CCCCeEEEEEEEEe---ecCCcEEEEEEeeecEE
Q psy4665 290 L--GGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKA------D-YGGPVEAMIVESKF---DTHRGKLATALVQRGTL 357 (673)
Q Consensus 290 ~--~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~------~-~~~~~~~~V~e~~~---~~~~G~v~~~~V~~G~L 357 (673)
. ....|++++||++|.|++.||++|..+.+.+.... . .++|+.++||++.. .+++|+++++||++|+|
T Consensus 246 ~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l 325 (529)
T 2h5e_A 246 FLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKY 325 (529)
T ss_dssp HHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCE
T ss_pred HHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeE
Confidence 1 23457899999999999999999999865432211 1 14789999999976 46789999999999999
Q ss_pred eeCCEEEeCCcceEEE--Eec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHH
Q psy4665 358 KKGAIVVAGQAWAKVR--SIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSA 429 (673)
Q Consensus 358 k~g~~v~~g~~~~kvr--~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~ 429 (673)
++|+.+++.+...++| .++ ++++++|.|||+ |+ +.|++++. .||||+..+.. . |
T Consensus 326 ~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdi------v~-i~~l~~~~---~Gdtl~~~~~~--~---~--- 387 (529)
T 2h5e_A 326 EKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDI------LG-LHNHGTIQ---IGDTFTQGEMM--K---F--- 387 (529)
T ss_dssp ETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCE------EE-ECCSSCCC---TTCEEESSCCC--C---B---
T ss_pred cCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCE------EE-EeccCCCc---cCCEeecCCcc--c---c---
Confidence 9999999877655444 333 568999999999 88 88887655 59999975421 0 0
Q ss_pred HHHhhhhhccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHH
Q psy4665 430 LCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELA 509 (673)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA 509 (673)
.. .....+.+..-|.+...+..+.+.+.|.++..+. .+.+....
T Consensus 388 ---------~~--------------~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed-~~~~~~~~------------ 431 (529)
T 2h5e_A 388 ---------TG--------------IPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEG-AVQVFRPI------------ 431 (529)
T ss_dssp ---------CC--------------CEEECCSEEEEEEESCC---CTHHHHHHHHHHTT-SCEEEEET------------
T ss_pred ---------CC--------------CCCCCccEEEEEEECChHHHHHHHHHHHHHHhhC-CEEEEEeC------------
Confidence 00 0012356666677777777777777777765433 24433221
Q ss_pred hhcCCeEEEEcCCCCHhH--HhHHHHcCCeEEEech
Q psy4665 510 TLFNAIIYTFNTTLHPAA--KTSAEELGVTVKQFNV 543 (673)
Q Consensus 510 ~~~~a~I~~Fnv~~~~~~--~~~a~~~~V~i~~~~i 543 (673)
.++..|+++==.+.-++ ..+.++.||.+.....
T Consensus 432 -~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 432 -SNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp -TSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred -CCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 12355555533333333 3444555666665543
No 16
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=99.97 E-value=5.4e-33 Score=233.16 Aligned_cols=98 Identities=31% Similarity=0.658 Sum_probs=93.6
Q ss_pred EEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcC
Q psy4665 564 AEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLED 643 (673)
Q Consensus 564 ~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~ 643 (673)
+|+++|+|+|+++|.++ |.++||||+|++|++++|+++||+|||++||+|+|.||||+|+||+||++|.||||.|++
T Consensus 2 ~E~~~G~AeVr~vF~is---k~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~ 78 (99)
T 1d1n_A 2 EEKVIGQAEVRQTFKVS---KVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN 78 (99)
T ss_dssp CCCEEEEEEECCCCCCS---SSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT
T ss_pred eEEEEEEEEEEEEEEcC---CceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC
Confidence 57899999999999987 567999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEEEEeeccc
Q psy4665 644 PSIEFEPGDTIVCFVKNKVPQF 665 (673)
Q Consensus 644 ~~~~~~~gD~i~~~~~~~~~~~ 665 (673)
|| ||++||+||||+..+++|+
T Consensus 79 ~~-dik~GD~Ie~ye~~ev~r~ 99 (99)
T 1d1n_A 79 FN-DIKEGDVIEAYVMQEVARA 99 (99)
T ss_dssp CS-SCSSCSEEEEECCSCCCC-
T ss_pred cC-CCCCCCEEEEEEEEEEcCC
Confidence 99 9999999999999998874
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.97 E-value=2.3e-31 Score=296.58 Aligned_cols=273 Identities=23% Similarity=0.271 Sum_probs=205.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~ 161 (673)
....+|+++|++|+|||||+++|++.. ......+|+|.+.....+.. .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence 345799999999999999999997541 11223468898888888877 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-------ChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-------VMEQTVESIRMAREAKVP-IIVAINKIDKPAADIE 233 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-------~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~ 233 (673)
+..++|||||||++|...+..+++.+|++++|+|++++ ...|+.+++..+...++| +|+|+||+|+.+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 78999999999999999999999999999999999997 567999999999988865 9999999999875433
Q ss_pred H---HHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCc
Q psy4665 234 R---TKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 307 (673)
Q Consensus 234 ~---~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl 307 (673)
. ..+.+... +..++ ..++++++||++|.|++++.+.+. ..+|++|..+
T Consensus 190 ~~~~i~~~~~~~---l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~-----------------------~~~wy~g~~L 243 (483)
T 3p26_A 190 RFEEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDE-----------------------VRQWYNGPNL 243 (483)
T ss_dssp HHHHHHHHHHHH---HHHHTCCGGGEEEEECCSSSCTTSSSSCCCHH-----------------------HHHHCCSCCH
T ss_pred HHHHHHHHHHHH---HHHcCCCcccceEEEEeeecCCCccccCcccc-----------------------cccccCCCCH
Confidence 3 22222221 11111 147899999999999988643221 1345667777
Q ss_pred chhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeec---CCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--c---
Q psy4665 308 DNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDT---HRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--R--- 377 (673)
Q Consensus 308 ~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~---~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~--- 377 (673)
.++|+.+....+...+....+.|++..|.+++..+ +.|+++.++|.+|+|++||.|.+++. ..+|++|. .
T Consensus 244 ~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~ 323 (483)
T 3p26_A 244 MSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323 (483)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-
T ss_pred HHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccc
Confidence 77777775543332234456789999999999876 58999999999999999999987764 46788876 3
Q ss_pred -----cccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCC
Q psy4665 378 -----KTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 378 -----~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
.++++|.||+. |++.++-.+...+++||+++..++
T Consensus 324 ~~~~~~~~~~a~aG~~------v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 324 QSTNHEETDVAIKGDF------VTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ----CCEESCEETTCE------EEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccccEECCCCE------EEEEEEecccccCCceEEEEcCCC
Confidence 68999999999 885444333455778999998877
No 18
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=4.6e-31 Score=304.11 Aligned_cols=343 Identities=20% Similarity=0.169 Sum_probs=248.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc------------------ccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK------------------SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~------------------~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+.++|+|+||+|||||||+++|++..... ...+++|.......+.+ .+..++|||||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 356789999999999999999998432110 01246677666666666 67899999999999
Q ss_pred cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCcee
Q psy4665 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 175 ~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|...+.++++.+|++++|+|++++...++.++++.+...++|+++++||+|+. ....+..+.+....... ...
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~-----~~~ 159 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPI-----LPI 159 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSE-----EEC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCc-----ceE
Confidence 999999999999999999999999999999999999999999999999999998 77666666655431111 234
Q ss_pred EEEeeccCCCCh------------------------------------hhHHHHHHH----HHHHHHhC-CCCccccc--
Q psy4665 255 AVPISALTGTNV------------------------------------DNLTEAIER----TKNMLLAQ-GITVEDLG-- 291 (673)
Q Consensus 255 ~v~iSA~~g~gv------------------------------------~~l~~~i~~----~~~~~~~~-~~~~ee~~-- 291 (673)
.+|+|+ +.++ +++++.+.+ ..+.++++ .++.+++.
T Consensus 160 ~~Pi~~--~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~ 237 (665)
T 2dy1_A 160 DLPLYE--GGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA 237 (665)
T ss_dssp EEEEEE--TTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred EeeecC--CCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 566666 2221 122333221 22333432 24444432
Q ss_pred --------CCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEE
Q psy4665 292 --------GDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIV 363 (673)
Q Consensus 292 --------~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v 363 (673)
..+|++++||++|.|++.|+++|..+.+.+.. ..+++|+.++|++++.+++.|+++++||++|+|++||.|
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~-~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v 316 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE-RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSL 316 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHH-HHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEE
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccc-cCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEE
Confidence 23578999999999999999999987542221 116789999999999999999999999999999999999
Q ss_pred EeCCcceEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCChhhHHHHHHHHHHHhhhhh
Q psy4665 364 VAGQAWAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVH 437 (673)
Q Consensus 364 ~~g~~~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~ 437 (673)
++.+...+|..++ ..++++|.||++ ++ +.|++++. .||||+..+++... .+
T Consensus 317 ~~~~~~~~v~~l~~~~g~~~~~v~~a~aG~i------v~-i~gl~~~~---~Gdtl~~~~~~~~~---------~l---- 373 (665)
T 2dy1_A 317 QSEAGQVRLPHLYVPMGKDLLEVEEAEAGFV------LG-VPKAEGLH---RGMVLWQGEKPESE---------EV---- 373 (665)
T ss_dssp BCTTSCEEESSEEEEETTEEEEESCEETTCE------EE-ESSCTTCC---TTCEEESSSCCCGG---------GS----
T ss_pred EcCCCeEEEeEEEEEeCCCeeECCEECCCCE------EE-EeCCccCc---cCCEEecCCCcccc---------cc----
Confidence 8876445665544 457999999999 88 78988654 69999976542100 00
Q ss_pred ccccchhHHhhhcccCCCCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEe---------eEEeeecCCCCh
Q psy4665 438 YGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRL---------DIVHYGVGQVSA 503 (673)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i---------~iv~~~vG~it~ 503 (673)
. ......+.+.+-|.+...+..+.+.+.|.++..+...+ +.+-+|.|.+.-
T Consensus 374 ---------~------~~~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhl 433 (665)
T 2dy1_A 374 ---------P------FARLPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHL 433 (665)
T ss_dssp ---------C------CCCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHH
T ss_pred ---------C------CCCCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHH
Confidence 0 01123478888889988888988888888875422222 344566776654
No 19
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=2e-30 Score=285.32 Aligned_cols=264 Identities=23% Similarity=0.242 Sum_probs=199.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc---------------------------------cccccceeeeEEEEEEEec
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV---------------------------------KSEFGGITQHIGAFVVTLK 160 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~---------------------------------~~~~~g~T~~~~~~~v~~~ 160 (673)
..++|+++||+|||||||+++|++.... .+..+|+|++.....+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 3578999999999999999999754310 011257788877666666
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHHH---H
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIERT---K 236 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~~---~ 236 (673)
++.+++|||||||++|...+..+++.+|++++|+|++++..+|+.+++..+...++| +++|+||+|+.+++.+.. .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999888885 899999999987554332 2
Q ss_pred HHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHH
Q psy4665 237 NMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 313 (673)
Q Consensus 237 ~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~ 313 (673)
+.+.+. +..++ ...+++++||++|.|++++++ ...|+.|..+.++++.
T Consensus 182 ~~~~~~---~~~~g~~~~~~~~i~vSA~~g~gi~~~~~--------------------------~~~w~~g~~L~~~l~~ 232 (434)
T 1zun_B 182 ADYLKF---AEGIAFKPTTMAFVPMSALKGDNVVNKSE--------------------------RSPWYAGQSLMEILET 232 (434)
T ss_dssp HHHHHH---HHTTTCCCSEEEEEECCTTTCTTTSSCCT--------------------------TCTTCCSCCTTHHHHH
T ss_pred HHHHHH---HHHhCCCccCceEEEEeccCCCCcccccc--------------------------cCccccCchHHHHHhc
Confidence 222221 11222 247899999999999988754 2345555545554443
Q ss_pred HHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccc
Q psy4665 314 IVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQ 389 (673)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~ 389 (673)
+ +....+...|+...|..++...+.|+...++|.+|+|++||.|.+++. ..+|++|. +.++++|.||++
T Consensus 233 i------~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~- 305 (434)
T 1zun_B 233 V------EIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQA- 305 (434)
T ss_dssp S------CCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCE-
T ss_pred C------CCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCE-
Confidence 3 222334567899999888876667778889999999999999988764 57899987 778999999999
Q ss_pred cccCcEEEeeeCCCCCCCCCCCeEeecCChhh
Q psy4665 390 RTSGTVKISLGFKINPFCPSGDVDGSVEALLD 421 (673)
Q Consensus 390 ~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~~~~ 421 (673)
|+ +.. ++...+++||+++..++++.
T Consensus 306 -----v~-~~l-~~~~~i~~G~~l~~~~~~~~ 330 (434)
T 1zun_B 306 -----VT-LTM-EDEIDISRGDLLVHADNVPQ 330 (434)
T ss_dssp -----EE-EEE-SSCCCCCTTCEEEETTSCCC
T ss_pred -----EE-EEe-CCccccCCccEEECCCCCCC
Confidence 88 433 33345679999998877533
No 20
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=2.4e-30 Score=282.36 Aligned_cols=268 Identities=27% Similarity=0.288 Sum_probs=196.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC--------ccc---------cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT--------SVV---------KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~--------~~~---------~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
..++|+++||+|+|||||+++|++. .+. ....+|+|.+.....+.. .+..++|||||||++|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence 4578999999999999999999873 111 112468888876666655 5689999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHHH----HHcCcccccc
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNML----LAQGITVEDL 249 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~l----~~~~~~~~~~ 249 (673)
...+.++++.+|++++|+|++++..+|+.+++..+...++| +++++||+|+.+.. .+...+.+ ...+..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~---- 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---- 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc----
Confidence 99999999999999999999999999999999999999999 89999999997521 11122222 222210
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCC
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~ 329 (673)
....+++++||++|.|+.+-. ..+. .. ..++. .++.+|++.|..+.+ .+..+.+.
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~------------~~~~-----~~----~~~~~--~~i~~Ll~~l~~~lp--~p~~~~~~ 219 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRN------------PKTR-----RG----ENEWV--DKIWELLDAIDEYIP--TPVRDVDK 219 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHC------------TTCC-----TT----SCHHH--HHHHHHHHHHHHHSC--CCCCCCSS
T ss_pred ccCCCEEEccHHHhhhhhccc------------cccc-----cC----CCccc--ccHHHHHHHHHhhcC--CCCCCCCC
Confidence 124689999999887642200 0000 00 00111 136677777766532 23345578
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec--ccccceeccCccccccCcEEEe-eeC
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS--RKTLINTALGTVQRTSGTVKIS-LGF 401 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i-~gl 401 (673)
|+.+.|.+++.++++|++++++|.+|+|++||.+.+.+. ..+|++++ +.++++|.|||. |++. .|+
T Consensus 220 p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~------v~~~l~g~ 293 (405)
T 2c78_A 220 PFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDN------VGVLLRGV 293 (405)
T ss_dssp CCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCE------EEEEESSC
T ss_pred CcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCE------EEEEECCC
Confidence 999999999999999999999999999999999965443 46788876 889999999999 8832 244
Q ss_pred CCCCCCCCCCeEeecCC
Q psy4665 402 KINPFCPSGDVDGSVEA 418 (673)
Q Consensus 402 ~~~~~~~~Gd~l~~~~~ 418 (673)
+ ...+++||+++...+
T Consensus 294 ~-~~~i~~G~~l~~~~~ 309 (405)
T 2c78_A 294 S-REEVERGQVLAKPGS 309 (405)
T ss_dssp C-TTTCCTTCEEESTTS
T ss_pred c-HhhcCceEEEEcCCC
Confidence 3 345678999997654
No 21
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=296.15 Aligned_cols=273 Identities=23% Similarity=0.268 Sum_probs=204.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccc-------------------------------cccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-------------------------------EFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~-------------------------------~~~g~T~~~~~~~v~~~~ 161 (673)
....+|+++|++|+|||||+++|++...... ..+|+|.+.....+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 4467999999999999999999986532111 1368899888888877 6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-------ChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-------VMEQTVESIRMAREAKVP-IIVAINKIDKPAADIE 233 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-------~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~ 233 (673)
+.+++|||||||++|...+..+++.+|++|+|+|+++| ...|+.+++..+...++| +|+|+||+|+.+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 78999999999999999999999999999999999986 457999999999988877 9999999999875433
Q ss_pred HH---HHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCc
Q psy4665 234 RT---KNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 307 (673)
Q Consensus 234 ~~---~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl 307 (673)
.. .+.+... +..++ ..++++++||++|.|++++..... ..+|++|..+
T Consensus 324 ~~~ei~~~l~~~---l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~-----------------------~~~Wy~g~~L 377 (611)
T 3izq_1 324 RFEEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDE-----------------------VRQWYNGPNL 377 (611)
T ss_dssp HHHHHHHHHHHH---HHHHTCCGGGCEEEECCTTTCTTTSSCTTSCT-----------------------TCCSCCSCCH
T ss_pred HHHHHHHHHHHH---HHhhcccccCccEEeeecccCCCccccCcccc-----------------------ccccccCCcH
Confidence 22 2222221 11111 146899999999999987532100 1567777665
Q ss_pred chhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeec---CCcEEEEEEeeecEEeeCCEEEeCCcc--eEEEEec-c----
Q psy4665 308 DNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDT---HRGKLATALVQRGTLKKGAIVVAGQAW--AKVRSIS-R---- 377 (673)
Q Consensus 308 ~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~---~~G~v~~~~V~~G~Lk~g~~v~~g~~~--~kvr~i~-~---- 377 (673)
.++|+.+....+...+....+.|++..|.+++..+ +.|+++.|+|.+|++++||.|++++.. .+|++|+ .
T Consensus 378 ~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~ 457 (611)
T 3izq_1 378 MSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 457 (611)
T ss_dssp HHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCS
T ss_pred HHHHHHHhhcccccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEccccc
Confidence 55555442111101122345789999999999887 589999999999999999999987754 5688876 3
Q ss_pred -----cccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCC
Q psy4665 378 -----KTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 378 -----~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
.++++|.||++ |++.+.-.+...+++||+++..++
T Consensus 458 ~~~~~~~v~~A~aGd~------v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 458 QSTNHEETDVAIKGDF------VTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CSSSCCCCCCEETTCE------EEEEESSCCTTSCCTTCEEBCSTT
T ss_pred ccccccccceecCCCc------ceEEeeeccHhhCcceEEccCCCC
Confidence 68999999999 884333223456779999998876
No 22
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=4.4e-30 Score=279.37 Aligned_cols=258 Identities=28% Similarity=0.314 Sum_probs=193.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc-------c---------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS-------V---------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN 178 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~-------~---------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~ 178 (673)
..+|+++||+|||||||+++|++.. + .....+|+|.+.....+.. ++..++|||||||++|..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHHHH
Confidence 3689999999999999999998741 1 0122568888876655655 568999999999999999
Q ss_pred hhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHH----HHHHcCccccccCC
Q psy4665 179 MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKN----MLLAQGITVEDLGG 251 (673)
Q Consensus 179 ~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~----~l~~~~~~~~~~~~ 251 (673)
.+.++++.+|++++|+|++++...|+.+++..+...++| +++++||+|+.+.. .+...+ .+...+.. ..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK----GE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC----TT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC----cc
Confidence 999999999999999999999999999999999999999 78999999997521 111222 22222210 12
Q ss_pred ceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCC-cchhHHHHHHHHHhhhcccCCCCC
Q psy4665 252 DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN-VDNLTEAIVAQAEIMHLKADYGGP 330 (673)
Q Consensus 252 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~g-l~~Ll~~i~~~~~~~~~~~~~~~~ 330 (673)
.++++++||++|.|.+. ..+ +.| +.+|+++|..+.+ .+..+.+.|
T Consensus 158 ~~~~i~~SA~~g~n~~~------------------------------~~~--~~g~i~~Ll~~l~~~~p--~p~~~~~~p 203 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRD------------------------------PEL--GLKSVQKLLDAVDTYIP--VPTRDLEKP 203 (397)
T ss_dssp TSCEEECCHHHHHTTCC------------------------------TTT--THHHHHHHHHHHHHHSC--CCCCCTTSC
T ss_pred cCcEEEeehhhcccccC------------------------------CCc--cCCcHHHHHHHHHHhCC--CCCCCCCCc
Confidence 46788888887655210 011 123 6778887766532 233455789
Q ss_pred eEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEe-CC---cceEEEEec--ccccceeccCccccccCcEEEe-eeCCC
Q psy4665 331 VEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVA-GQ---AWAKVRSIS--RKTLINTALGTVQRTSGTVKIS-LGFKI 403 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~-g~---~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i-~gl~~ 403 (673)
+.+.|++++.++++|++++++|.+|+|++||.|.+ +. ...+|++|. ++++++|.||+. |++. .|++
T Consensus 204 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~------v~~~l~~i~- 276 (397)
T 1d2e_A 204 FLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDN------LGALVRGLK- 276 (397)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCE------EEEEESSCC-
T ss_pred EEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCc------eEEEecccc-
Confidence 99999999999999999999999999999999964 32 356888876 889999999999 8832 2443
Q ss_pred CCCCCCCCeEeecCC
Q psy4665 404 NPFCPSGDVDGSVEA 418 (673)
Q Consensus 404 ~~~~~~Gd~l~~~~~ 418 (673)
...+++||+++...+
T Consensus 277 ~~~i~~G~~l~~~~~ 291 (397)
T 1d2e_A 277 REDLRRGLVMAKPGS 291 (397)
T ss_dssp GGGCCTTCEEESTTS
T ss_pred hhccCceeEEeCCCC
Confidence 245668999997654
No 23
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=3e-30 Score=283.89 Aligned_cols=263 Identities=26% Similarity=0.328 Sum_probs=191.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC--ccc-----------------------------cccccceeeeEEEEEEEecCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT--SVV-----------------------------KSEFGGITQHIGAFVVTLKSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~--~~~-----------------------------~~~~~g~T~~~~~~~v~~~~~ 162 (673)
..++|+++||+|+|||||+++|++. .+. .+..+|+|++.....+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 4578999999999999999999864 111 112468888887777776 57
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-------ChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--H
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-------VMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--I 232 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-------~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~ 232 (673)
.+++|||||||++|...+.++++.+|++++|+|++++ ...|+.+++..+...++| +++++||+|+.+.+ .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 8999999999999999999999999999999999998 677999999999988875 99999999998732 2
Q ss_pred H---HHHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCC
Q psy4665 233 E---RTKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 306 (673)
Q Consensus 233 ~---~~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~g 306 (673)
+ ...+.+.+. +..++ ..++++++||++|.|+.++++. ..++.|
T Consensus 164 ~~~~~~~~~i~~~---~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~--------------------------~~~~~g-- 212 (435)
T 1jny_A 164 KRYKEIVDQVSKF---MRSYGFNTNKVRFVPVVAPSGDNITHKSEN--------------------------MKWYNG-- 212 (435)
T ss_dssp HHHHHHHHHHHHH---HHHTTCCCTTCEEEECBTTTTBTTTBCCSS--------------------------CTTCCS--
T ss_pred HHHHHHHHHHHHH---HHHcCCCcCCceEEEeecccCccccccccc--------------------------cccccc--
Confidence 2 222333222 11111 1478999999999999775421 123333
Q ss_pred cchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccce
Q psy4665 307 VDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLIN 382 (673)
Q Consensus 307 l~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~ 382 (673)
..|+++|... +.+....+.|+...|.+++..++.|++++++|.+|+|++||.+++.+. ..+|++|+ ++++++
T Consensus 213 -~~Ll~~l~~~---~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~ 288 (435)
T 1jny_A 213 -PTLEEYLDQL---ELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDK 288 (435)
T ss_dssp -CCHHHHHTTC---CCCCCGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESE
T ss_pred -hhHHHHHhcc---CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeE
Confidence 4677776442 112223457888899999999999999999999999999999987654 57788877 889999
Q ss_pred eccCccccccCcEEE-eeeCCCCCCCCCCCeEeecCCh
Q psy4665 383 TALGTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 383 a~~G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~ 419 (673)
|.||++ |++ +.|++ ...+++||+++..+++
T Consensus 289 a~aG~~------v~~~l~g~~-~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 289 AEPGDN------IGFNVRGVE-KKDIKRGDVVGHPNNP 319 (435)
T ss_dssp ECTTCE------EEEEEESSC-GGGCCTTCEEECTTSC
T ss_pred EcCCCE------EEEEEecCC-HHHcCCccEecCCCCC
Confidence 999999 884 33443 2345689999976543
No 24
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.97 E-value=2.2e-30 Score=287.14 Aligned_cols=266 Identities=26% Similarity=0.354 Sum_probs=180.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--c-----------------------------ccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--V-----------------------------VKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~-----------------------------~~~~~~g~T~~~~~~~v~~~~ 161 (673)
...++|+++||+|||||||+++|+... + .....+|+|++.....+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 345789999999999999999997421 1 0122468888887777777 5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCCh-------HhhHHHHHHHHHcCCC-EEEEEecCCCCCC--c
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-------EQTVESIRMAREAKVP-IIVAINKIDKPAA--D 231 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~-------~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~--~ 231 (673)
+.+++|||||||++|...+.++++.+|++|||+|+++|.. .|+.+++..+...++| +|+++||+|+.+. +
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 7899999999999999999999999999999999999874 6999999999999998 9999999999653 2
Q ss_pred HHHH---HHHH----HHc-CccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeecccc
Q psy4665 232 IERT---KNML----LAQ-GITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALT 303 (673)
Q Consensus 232 ~~~~---~~~l----~~~-~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~ 303 (673)
.++. ...+ ... ++.. ...++++++||++|.|+.++++.- ...|+.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~---~~~~~~i~vSA~~g~~i~~l~~~~------------------------~~~w~~ 252 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNS---KTDVKYMPVSAYTGQNVKDRVDSS------------------------VCPWYQ 252 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCH---HHHEEEEECBTTTTBTTSSCCCTT------------------------TCSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc---cCCceEEecccccccccccccccc------------------------cCcccc
Confidence 2222 2222 221 2110 014789999999999998765210 234555
Q ss_pred CCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec---cc
Q psy4665 304 GTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS---RK 378 (673)
Q Consensus 304 g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~---~~ 378 (673)
|. .|++.|... +.+..+.+.|+++.|.+++. +.|++++++|.+|+|++||.|.+++. ..+|++|+ ++
T Consensus 253 g~---~L~~~l~~i---~~~~~~~~~p~~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~ 324 (467)
T 1r5b_A 253 GP---SLLEYLDSM---THLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE 324 (467)
T ss_dssp SC---CHHHHHHHC---CCCHHHHTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCC
T ss_pred ch---hHHHHHHhC---CCCcCCCCCCcEEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCc
Confidence 54 355555432 22233457889999999876 47899999999999999999987553 56888876 57
Q ss_pred ccceeccCccccccCcEEEe-eeCCCCCCCCCCCeEeecCChhhH
Q psy4665 379 TLINTALGTVQRTSGTVKIS-LGFKINPFCPSGDVDGSVEALLDV 422 (673)
Q Consensus 379 ~v~~a~~G~~~~~~g~v~~i-~gl~~~~~~~~Gd~l~~~~~~~~~ 422 (673)
++++|.||+. |++. .| +...+++||+++..+++...
T Consensus 325 ~~~~a~aG~~------v~i~l~g--~~~~i~rG~vl~~~~~~~~~ 361 (467)
T 1r5b_A 325 EISSSICGDQ------VRLRVRG--DDSDVQTGYVLTSTKNPVHA 361 (467)
T ss_dssp EESEEETTCE------EEEEEES--CCTTCCTTCEEECSSSCCCE
T ss_pred EeeEEcCCCE------EEEEEec--cHhhCCceEEEeCCCCCCcc
Confidence 8999999999 8843 34 44556799999987654333
No 25
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.97 E-value=4.7e-30 Score=283.73 Aligned_cols=273 Identities=26% Similarity=0.300 Sum_probs=201.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc--cc-----------------------------cccccceeeeEEEEEEEecCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS--VV-----------------------------KSEFGGITQHIGAFVVTLKSG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~--~~-----------------------------~~~~~g~T~~~~~~~v~~~~~ 162 (673)
..++|+++||+|||||||+++|++.. +. .+..+|+|++.....+.. ++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34789999999999999999998641 10 112368898887777776 67
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChH-------hhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHH
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME-------QTVESIRMAREAKVP-IIVAINKIDKPAADIER 234 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~-------q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~ 234 (673)
..++|||||||++|...+..+++.+|+++||+|++++..+ |+.+++..+...++| +|+++||+|+.+++.++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence 8999999999999999999999999999999999998776 899999988889997 99999999998544332
Q ss_pred ---HHHHHHHcCccccccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCC-Cc
Q psy4665 235 ---TKNMLLAQGITVEDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGT-NV 307 (673)
Q Consensus 235 ---~~~~l~~~~~~~~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~-gl 307 (673)
..+.+... +..++ ..++++++||++|.|+.++.+. ..|..++ ..+..+|. ..
T Consensus 165 ~~~i~~~~~~~---l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~------~~~~~~~------------~~~~~tg~~~~ 223 (458)
T 1f60_A 165 FQEIVKETSNF---IKKVGYNPKTVPFVPISGWNGDNMIEATTN------APWYKGW------------EKETKAGVVKG 223 (458)
T ss_dssp HHHHHHHHHHH---HHHHTCCGGGCCEEECCTTTCBTTTBCCSS------CTTCCCE------------EEECSSSEEEE
T ss_pred HHHHHHHHHHH---HHHcCCCccCceEEEeecccCcCccccccc------Cchhhcc------------cccccccccch
Confidence 22222221 11111 1368999999999999765321 1111111 11112221 02
Q ss_pred chhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--cccccee
Q psy4665 308 DNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINT 383 (673)
Q Consensus 308 ~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a 383 (673)
..|+++|... ..+....+.|++..|.+++..++.|++++++|.+|++++||.|.+.+. ..+|++|. +.++.+|
T Consensus 224 ~~Ll~~l~~~---~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a 300 (458)
T 1f60_A 224 KTLLEAIDAI---EQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG 300 (458)
T ss_dssp SSHHHHHHTS---CCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCB
T ss_pred HHHHHHhhcc---CCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEE
Confidence 4677776532 233344578999999999999999999999999999999999977653 57888877 7789999
Q ss_pred ccCccccccCcEEEee-eCCCCCCCCCCCeEeecCC
Q psy4665 384 ALGTVQRTSGTVKISL-GFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 384 ~~G~~~~~~g~v~~i~-gl~~~~~~~~Gd~l~~~~~ 418 (673)
.||+. |++.+ |++ ...+++||+++...+
T Consensus 301 ~aG~~------v~i~l~gi~-~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 301 VPGDN------VGFNVKNVS-VKEIRRGNVCGDAKN 329 (458)
T ss_dssp CTTCE------EEEEESSCC-TTTSCTTCEEEETTS
T ss_pred cCCCE------EEEEEcCCc-ccccCceeEEecCCC
Confidence 99999 88433 553 234568999998764
No 26
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-30 Score=293.70 Aligned_cols=268 Identities=22% Similarity=0.254 Sum_probs=178.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------------------------------cccccccceeeeEEEEEEEecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------------------------------VVKSEFGGITQHIGAFVVTLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------------------------------~~~~~~~g~T~~~~~~~v~~~~ 161 (673)
...++|+++||+|||||||+++|++.. ......+|+|++.....+.+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 345689999999999999999996421 11123578999988888877 5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC-------hHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-------MEQTVESIRMAREAKVP-IIVAINKIDKPAADIE 233 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-------~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~ 233 (673)
+..++|||||||++|...+..++..+|++|||+|+++|. ..|+.+++..+...++| +|+|+||||+.+++.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 789999999999999999999999999999999999864 88999999999999998 9999999999875544
Q ss_pred HHHHHHHHcCccc-cccC---CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcch
Q psy4665 234 RTKNMLLAQGITV-EDLG---GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 309 (673)
Q Consensus 234 ~~~~~l~~~~~~~-~~~~---~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~ 309 (673)
.......+....+ ..++ ..++++++||++|.|+.+..+.. ...|++| ..
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~------------------------~~~w~~g---~~ 386 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSD------------------------LYKWYKG---PT 386 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCG------------------------GGGTCCS---CC
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccc------------------------cccccch---HH
Confidence 4332222211111 1111 24689999999999987532100 1334444 35
Q ss_pred hHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccc-eec
Q psy4665 310 LTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLI-NTA 384 (673)
Q Consensus 310 Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~-~a~ 384 (673)
|++.|.... .+....+.|+...|.+++.. +.|++++++|.+|+|++||.|.+.+. ..+|++|. +.+++ +|.
T Consensus 387 Lle~l~~~~---pp~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~ 462 (592)
T 3mca_A 387 LLSALDQLV---PPEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAV 462 (592)
T ss_dssp HHHHHHTSC---CCSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEE
T ss_pred HHHHHHhhc---cccccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceec
Confidence 777765432 23445678999999999999 99999999999999999999988664 46888877 88999 999
Q ss_pred cCccccccCcEEE-eeeCCCCCCCCCCCeEeecCCh
Q psy4665 385 LGTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEAL 419 (673)
Q Consensus 385 ~G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~~ 419 (673)
||++ |++ +.|++ ...+++||+++..+++
T Consensus 463 aG~~------v~~~l~~i~-~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 463 AGDT------VTLQLADIE-VNQLRPGDILSNYENP 491 (592)
T ss_dssp TTCE------EEEEESSSC-GGGCCTTCEEECSSSC
T ss_pred CCCE------EEEEEcccc-ccccceEEEeccCCCC
Confidence 9999 884 33443 3346789999987664
No 27
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.97 E-value=2.5e-29 Score=270.00 Aligned_cols=238 Identities=18% Similarity=0.168 Sum_probs=181.3
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+|+++||+|+|||||+++|+ .+++|++.....+.+ ++.+++|||||||++|...+.++++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 468888888777776 56789999999999999998889999999999999
Q ss_pred CCCChHhhHHHHHHHHHcCCCE-EEEEe-cCCCCCCcH-HHHHHHHHHcCccccccC-CceeEEE--eeccC---CCChh
Q psy4665 197 DDGVMEQTVESIRMAREAKVPI-IVAIN-KIDKPAADI-ERTKNMLLAQGITVEDLG-GDIQAVP--ISALT---GTNVD 267 (673)
Q Consensus 197 ~~g~~~q~~~~l~~~~~~~iP~-IvviN-K~Dl~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~v~--iSA~~---g~gv~ 267 (673)
+++..+|+.+++..+...++|. ++++| |+|+ +.+. +...+.+.+.. ..++ ..+++++ +||++ +.|++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l---~~~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT---SGTVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT---TTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH---HhcCCCceEEEecccccccCcCCCCHH
Confidence 9999999999999999999998 99999 9999 4322 22223333321 1111 2367787 77777 77777
Q ss_pred hHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccC-CCCCeEEEEEEEEeecCCcE
Q psy4665 268 NLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKAD-YGGPVEAMIVESKFDTHRGK 346 (673)
Q Consensus 268 ~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~-~~~~~~~~V~e~~~~~~~G~ 346 (673)
+|++.+.+...... ..... ...|++.+|.+++..++.|+
T Consensus 169 ~L~~~l~~~~~~~~----------------------------------------~~~~~~~~~p~r~~v~~vf~~~~~G~ 208 (370)
T 2elf_A 169 ELKARINEVAEKIE----------------------------------------AENAELNSLPARIFIDHAFNVTGKGC 208 (370)
T ss_dssp HHHHHHHHHHHHHH----------------------------------------HHHHHGGGSCCEEEEEEEECCC---C
T ss_pred HHHHHHHhhccccc----------------------------------------cCCcccccccccccceeEEEcCCCce
Confidence 76666544322110 00111 34567888999999999999
Q ss_pred EEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEEe-eeCCCCCCCCCCCeEee
Q psy4665 347 LATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKIS-LGFKINPFCPSGDVDGS 415 (673)
Q Consensus 347 v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i-~gl~~~~~~~~Gd~l~~ 415 (673)
+++++|.+|++++||.+++.+. ..+|++|. ++++++|.||++ |++. .|++ ...+++||+++.
T Consensus 209 v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~------v~i~l~gv~-~~~i~~Gdvl~~ 275 (370)
T 2elf_A 209 VVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTR------VGMRLKNVQ-AKDIERGFIISD 275 (370)
T ss_dssp EEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCE------EEEEEESCC-GGGCCTTCEEES
T ss_pred EEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCc------ceEEEeccC-HHHcCCceEEEC
Confidence 9999999999999999987664 56788876 889999999999 8843 3442 234568999997
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=4.3e-29 Score=272.60 Aligned_cols=258 Identities=23% Similarity=0.274 Sum_probs=177.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc---cccccccceeeeEEEEEEEec--------------C--------CeEEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAFVVTLK--------------S--------GEQVTF 167 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~---~~~~~~~g~T~~~~~~~v~~~--------------~--------~~~i~l 167 (673)
...++|+++||+|||||||+++|++.. +.....+|+|++.......+. . ...++|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 345799999999999999999998543 344556788887664443321 0 167999
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEEECCCCC-hHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcH-HHHHHHHHHcCc
Q psy4665 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKV-PIIVAINKIDKPAADI-ERTKNMLLAQGI 244 (673)
Q Consensus 168 iDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~-~~~~~~l~~~~~ 244 (673)
||||||++|...+.+++..+|++++|+|++++. ..|+.+++..+...+. |+++++||+|+.+.+. ....+.+.+...
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999997 8999999998888776 7999999999976432 111122221100
Q ss_pred cccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcc
Q psy4665 245 TVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLK 324 (673)
Q Consensus 245 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~ 324 (673)
..+...++++++||++|.|++ +|++.|.... ..+.
T Consensus 166 --~~~~~~~~~i~vSA~~g~gi~-----------------------------------------~L~~~l~~~i--~~~~ 200 (408)
T 1s0u_A 166 --GTIAENAPIIPISAHHEANID-----------------------------------------VLLKAIQDFI--PTPK 200 (408)
T ss_dssp --TSTTTTCCEEEC------CHH-----------------------------------------HHHHHHHHHS--CCCC
T ss_pred --hcCCCCCeEEEeeCCCCCCHH-----------------------------------------HHHHHHHHhC--CCCc
Confidence 001123456655555555554 4444444321 1223
Q ss_pred cCCCCCeEEEEEEEEeec--------CCcEEEEEEeeecEEeeCCEEEeCCc--------------ceEEEEec--cccc
Q psy4665 325 ADYGGPVEAMIVESKFDT--------HRGKLATALVQRGTLKKGAIVVAGQA--------------WAKVRSIS--RKTL 380 (673)
Q Consensus 325 ~~~~~~~~~~V~e~~~~~--------~~G~v~~~~V~~G~Lk~g~~v~~g~~--------------~~kvr~i~--~~~v 380 (673)
.+.+.|+.+.|.+++... ++|.++.++|.+|+|++||.+.+.+. ..+|++|+ ++++
T Consensus 201 ~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 280 (408)
T 1s0u_A 201 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTIL 280 (408)
T ss_dssp CCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEE
T ss_pred ccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEc
Confidence 345678899999988653 37889999999999999999976542 46788887 8899
Q ss_pred ceeccCccccccCcEEEeeeCC-C--CCCCCCCCeEeecCChhh
Q psy4665 381 INTALGTVQRTSGTVKISLGFK-I--NPFCPSGDVDGSVEALLD 421 (673)
Q Consensus 381 ~~a~~G~~~~~~g~v~~i~gl~-~--~~~~~~Gd~l~~~~~~~~ 421 (673)
++|.||+. |++.++++ . ...+++||+++...+.+.
T Consensus 281 ~~a~~G~~------v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~ 318 (408)
T 1s0u_A 281 RKAHPGGL------IGVGTTLDPYLTKSDALTGSVVGLPGTLPP 318 (408)
T ss_dssp SEECSSSC------EEEECSSCGGGTGGGTTTTCEEESTTCSCC
T ss_pred CEEeCCCe------EEEEeccCcccchhhccceeEEECCCCCCc
Confidence 99999999 88544332 1 134568999998766543
No 29
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=5.7e-29 Score=271.88 Aligned_cols=257 Identities=26% Similarity=0.291 Sum_probs=183.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC---ccccccccceeeeEEEEEEEecC----------------------CeEEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAFVVTLKS----------------------GEQVTFL 168 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~---~~~~~~~~g~T~~~~~~~v~~~~----------------------~~~i~li 168 (673)
..++|+++||+|||||||+++|++. .......+|+|++.......+.. ...++||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4578999999999999999999854 33445567888876655443310 1679999
Q ss_pred eCCCCCcchhhhhhccccCCeEEEEEECCCCC-hHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcH-HHHHHHHHHcCcc
Q psy4665 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKV-PIIVAINKIDKPAADI-ERTKNMLLAQGIT 245 (673)
Q Consensus 169 DTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~-~~~~~~l~~~~~~ 245 (673)
|||||++|...+.+++..+|+++||+|++++. ..|+.+++..+...++ |+++++||+|+.+.+. ....+.+.+...
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~- 167 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE- 167 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT-
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999997 8999999998887776 6999999999976432 111222221100
Q ss_pred ccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhccc
Q psy4665 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKA 325 (673)
Q Consensus 246 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~ 325 (673)
......++++++ ||++|.|+++|++.|.... +.+..
T Consensus 168 -~~~~~~~~~i~v-----------------------------------------SA~~g~gi~~L~~~l~~~~--~~p~~ 203 (410)
T 1kk1_A 168 -GTVAENAPIIPI-----------------------------------------SALHGANIDVLVKAIEDFI--PTPKR 203 (410)
T ss_dssp -TSTTTTCCEEEC-----------------------------------------BTTTTBSHHHHHHHHHHHS--CCCCC
T ss_pred -hcCcCCCeEEEe-----------------------------------------eCCCCCCHHHHHHHHHHhC--CCCcc
Confidence 001123455544 4555555555555554432 12233
Q ss_pred CCCCCeEEEEEEEEee--------cCCcEEEEEEeeecEEeeCCEEEeCCc--------------ceEEEEec--ccccc
Q psy4665 326 DYGGPVEAMIVESKFD--------THRGKLATALVQRGTLKKGAIVVAGQA--------------WAKVRSIS--RKTLI 381 (673)
Q Consensus 326 ~~~~~~~~~V~e~~~~--------~~~G~v~~~~V~~G~Lk~g~~v~~g~~--------------~~kvr~i~--~~~v~ 381 (673)
+.+.|+.+.|.+++.. +++|++++++|.+|+|++||.+.+.+. .++|++|+ +.+++
T Consensus 204 ~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~ 283 (410)
T 1kk1_A 204 DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVE 283 (410)
T ss_dssp CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEES
T ss_pred ccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEec
Confidence 4467888999888754 457889999999999999999976542 46888887 88899
Q ss_pred eeccCccccccCcEEEeeeCC-C--CCCCCCCCeEeecCChhh
Q psy4665 382 NTALGTVQRTSGTVKISLGFK-I--NPFCPSGDVDGSVEALLD 421 (673)
Q Consensus 382 ~a~~G~~~~~~g~v~~i~gl~-~--~~~~~~Gd~l~~~~~~~~ 421 (673)
+|.||+. |++.++++ . ...+.+||+++...+.+.
T Consensus 284 ~a~aG~~------v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~ 320 (410)
T 1kk1_A 284 EAYPGGL------VGVGTKLDPYLTKGDLMAGNVVGKPGKLPP 320 (410)
T ss_dssp EECSSSC------EEEEESSCGGGTGGGTTTTCEEECTTCSCC
T ss_pred EEcCCCE------EEEEEecCcccchhhccceeEEecCCCCCc
Confidence 9999999 88555543 1 134568999998766543
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.96 E-value=4.1e-30 Score=285.66 Aligned_cols=256 Identities=27% Similarity=0.365 Sum_probs=182.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAH 185 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~ 185 (673)
.+.++|+++||+|+|||||+++|++.. ...+..+|+|++.....+.+ ++..++|||||||++|...+..++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHHHHHHHHHHh
Confidence 346799999999999999999999876 34556788999888777777 6789999999999999999999999
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
.+|++++|+|+++|..+|+.+++..+...++|.++++||+|+.+.+ .+...+.+.+.......+ ...+++++||++|.
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~ 174 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGF 174 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCT
T ss_pred hCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCC
Confidence 9999999999999999999999999999999999999999997522 222222222210000000 13456655555555
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecCC
Q psy4665 265 NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHR 344 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~~ 344 (673)
|++ +|++.|....+.+.+..+.+.|+...|.+++..++.
T Consensus 175 gI~-----------------------------------------~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~ 213 (482)
T 1wb1_A 175 GVD-----------------------------------------ELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGA 213 (482)
T ss_dssp THH-----------------------------------------HHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSC
T ss_pred CHH-----------------------------------------HHHHHHHHhhcCccccccccccccccceeEEEecCC
Confidence 554 455544444332322344556777888888888999
Q ss_pred cEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEE-eeeCCCCCCCCCCCeEeecCC
Q psy4665 345 GKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 345 G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
|++++++|.+|++++||.+...+. ..+|++|. ++++++|.||+. |++ +.|++ ...+.+||+++..++
T Consensus 214 G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~------v~~~l~~~~-~~~i~~Gdvl~~~~~ 285 (482)
T 1wb1_A 214 GTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDR------VGMAIQGVD-AKQIYRGXILTSKDT 285 (482)
T ss_dssp CCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCC------CCEECSSCC-SSCCCSSCBCCCTTC
T ss_pred ceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCE------EEEEecCCC-HhhccccceEecCCC
Confidence 999999999999999999987653 46888877 889999999999 773 23553 234568999943333
No 31
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.96 E-value=1.5e-28 Score=287.98 Aligned_cols=259 Identities=29% Similarity=0.305 Sum_probs=187.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc----------------ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV----------------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~----------------~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
...++|+++||+|+|||||+++|++... .....+|+|.+.....+.. ++..++|||||||++|
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHH
Confidence 3457899999999999999999986410 1123467887776555554 5689999999999999
Q ss_pred hhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCc--HHHHHHH----HHHcCcccccc
Q psy4665 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNM----LLAQGITVEDL 249 (673)
Q Consensus 177 ~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~--~~~~~~~----l~~~~~~~~~~ 249 (673)
...+.++++.+|++|+|+|++++.++|+.+++..+...++| +|+++||+|+.+.. .+.+.++ +...+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~---- 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---- 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc----
Confidence 99999999999999999999999999999999999989999 79999999997521 1112222 2222210
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCC
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~ 329 (673)
+..++++++||++|.+-. .+ | . .|+.+|++.|....+ .+..+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~--~~---------w--------------------~--eGI~eLleaL~~~Ip--~P~r~~d~ 493 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGD--AE---------W--------------------E--AKILELAGFLDSYIP--EPERAIDK 493 (1289)
T ss_dssp TTTCCEEECCSTTTTTCC--HH---------H--------------------H--HHHHHHHHHHHHTSC--CCCCGGGS
T ss_pred ccceeEEEEEeccCCCCC--cc---------c--------------------c--ccchhhHhHHhhhcC--CCcccccc
Confidence 124678888888874310 00 0 0 245667777665322 22334568
Q ss_pred CeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc----ceEEEEec--ccccceeccCccccccCcEEE-eeeCC
Q psy4665 330 PVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA----WAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGFK 402 (673)
Q Consensus 330 ~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl~ 402 (673)
|+.+.|.+++.++++|++++++|.+|+|++||.|.+.+. ..+|++|. +.++++|.|||. |++ +.|++
T Consensus 494 Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~------Vgl~L~GI~ 567 (1289)
T 3avx_A 494 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGEN------VGVLLRGIK 567 (1289)
T ss_dssp CCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCE------EEEEESSCC
T ss_pred ceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCc------ceeEeeecc
Confidence 899999999999999999999999999999999975543 36888877 889999999999 884 23443
Q ss_pred CCCCCCCCCeEeecCC
Q psy4665 403 INPFCPSGDVDGSVEA 418 (673)
Q Consensus 403 ~~~~~~~Gd~l~~~~~ 418 (673)
...+++||+++...+
T Consensus 568 -~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 568 -REEIERGQVLAKPGT 582 (1289)
T ss_dssp -GGGCCTTCEEESTTS
T ss_pred -hhcCCcccEEecCCC
Confidence 345668999997654
No 32
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=99.96 E-value=3.9e-30 Score=230.10 Aligned_cols=101 Identities=32% Similarity=0.495 Sum_probs=96.1
Q ss_pred CCCCCceeeEEEEeCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhHHHHhhcCCeEEEEcCCCCHhHHhHHHHc
Q psy4665 455 PTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSAEEL 534 (673)
Q Consensus 455 ~~~~~~~~~~iikad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv~lA~~~~a~I~~Fnv~~~~~~~~~a~~~ 534 (673)
.+++.+.+|+|||||++||+|||.++|.++++++|+++|+|+|||+||++||.+|.+++|+|+||||+++++++++|++.
T Consensus 35 ~~~~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~a~~~A~~~ 114 (135)
T 1z9b_A 35 KQGEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANAKRAAESE 114 (135)
T ss_dssp CCCSSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEEEEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTTHHHHHHTT
T ss_pred hccCcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEEEEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEechhhHHHHHHHHHH
Q psy4665 535 GVTVKQFNVIYKLVEDVKEEI 555 (673)
Q Consensus 535 ~V~i~~~~iIY~l~~~~~~~~ 555 (673)
||+|++|+|||+|+||+++.|
T Consensus 115 gV~I~~~~IIY~liddv~~~m 135 (135)
T 1z9b_A 115 KVDIRLHRIIYNVIEEIEAAM 135 (135)
T ss_dssp TCCCEECTTCCCCSCCCSCC-
T ss_pred CCeEEEeChHHHHHHHHHHhC
Confidence 999999999999999987643
No 33
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.96 E-value=8.7e-28 Score=261.85 Aligned_cols=265 Identities=21% Similarity=0.218 Sum_probs=180.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccc---------------ccceeeeEEEEEEEe----cCCeEEEEEeCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---------------FGGITQHIGAFVVTL----KSGEQVTFLDTPGH 173 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~---------------~~g~T~~~~~~~v~~----~~~~~i~liDTpG~ 173 (673)
...++|+++|++|||||||+++|++....... ..+++.+.......+ .....++|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45689999999999999999999874321100 011111100000000 01268999999999
Q ss_pred CcchhhhhhccccCCeEEEEEECCCCC-hHhhHHHHHHHHHcCC-CEEEEEecCCCCCCcH-HHHHHHHHHcCccccccC
Q psy4665 174 AAFSNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKV-PIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 174 ~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~~~~l~~~~~~~i-P~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~ 250 (673)
++|...+..++..+|++++|+|++++. ..|+.+++..+...+. |+++|+||+|+.+.+. ....+.+.+... ....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~--~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK--GTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT--TSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH--hhCC
Confidence 999999999999999999999999987 8999999999888776 8999999999975431 122222222100 0011
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCC
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGP 330 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~ 330 (673)
..++++++||++|.|+++ |++.|.... +....+.+.|
T Consensus 164 ~~~~ii~vSA~~g~gi~~-----------------------------------------L~~~l~~~l--~~~~~~~~~~ 200 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDS-----------------------------------------LIEGIEEYI--KTPYRDLSQK 200 (403)
T ss_dssp TTCCEEECBTTTTBSHHH-----------------------------------------HHHHHHHHS--CCCCCCTTSC
T ss_pred CCCEEEEEECCCCcChHH-----------------------------------------HHHHHHHhC--CCCCCCCCCC
Confidence 234566555555555544 444444321 2233445678
Q ss_pred eEEEEEEEEeecC--------CcEEEEEEeeecEEeeCCEEEeCCcc--------------eEEEEec--ccccceeccC
Q psy4665 331 VEAMIVESKFDTH--------RGKLATALVQRGTLKKGAIVVAGQAW--------------AKVRSIS--RKTLINTALG 386 (673)
Q Consensus 331 ~~~~V~e~~~~~~--------~G~v~~~~V~~G~Lk~g~~v~~g~~~--------------~kvr~i~--~~~v~~a~~G 386 (673)
+...|.+++...+ +|++++++|.+|++++||.+.+++.. .+|++|+ ++++++|.||
T Consensus 201 ~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G 280 (403)
T 3sjy_A 201 PVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPG 280 (403)
T ss_dssp CEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSS
T ss_pred cEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCC
Confidence 9999999886443 89999999999999999999875543 5888887 8899999999
Q ss_pred ccccccCcEEEeeeCCC---CCCCCCCCeEeecCChhhHHHHHHH
Q psy4665 387 TVQRTSGTVKISLGFKI---NPFCPSGDVDGSVEALLDVFDTYTS 428 (673)
Q Consensus 387 ~~~~~~g~v~~i~gl~~---~~~~~~Gd~l~~~~~~~~~~~~~~~ 428 (673)
+. |++.++++. ...+.+||+++...+.+.+...|.+
T Consensus 281 ~~------v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a 319 (403)
T 3sjy_A 281 GL------VAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRI 319 (403)
T ss_dssp SC------EEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEE
T ss_pred CE------EEEEeccccccchhhhccccEEeCCCCCCcceeEEEE
Confidence 99 884343221 1345689999998876554323333
No 34
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.94 E-value=1.2e-26 Score=273.59 Aligned_cols=293 Identities=21% Similarity=0.240 Sum_probs=189.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc------------cc----cccccceeeeEEEEEEEec---------------CC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS------------VV----KSEFGGITQHIGAFVVTLK---------------SG 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~------------~~----~~~~~g~T~~~~~~~v~~~---------------~~ 162 (673)
+.++|+|+||+|||||||+++|+... +. ....+++|+......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 56799999999999999999998642 11 1124567766555555552 25
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC----CcHHHH---
Q psy4665 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA----ADIERT--- 235 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~----~~~~~~--- 235 (673)
..++|||||||.+|...+.++++.+|++|+|+|++++...|+...|.++...++|+++++||+|+.. .+.++.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999889999999999999862 223222
Q ss_pred ----HHHHHHcCcc-----ccc--cC-CceeEEEeeccCCCChh--hHHHH--------HHHHHHHHH------------
Q psy4665 236 ----KNMLLAQGIT-----VED--LG-GDIQAVPISALTGTNVD--NLTEA--------IERTKNMLL------------ 281 (673)
Q Consensus 236 ----~~~l~~~~~~-----~~~--~~-~~~~~v~iSA~~g~gv~--~l~~~--------i~~~~~~~~------------ 281 (673)
.+.+...-.. ... +. ...++...||++|.++. .+.+. +......+|
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 2222211000 000 00 01256677888775531 11100 111111112
Q ss_pred -------------------------------------------hC---CCCccccc---CCce-eeeeccccCCCcchhH
Q psy4665 282 -------------------------------------------AQ---GITVEDLG---GDIQ-AVPISALTGTNVDNLT 311 (673)
Q Consensus 282 -------------------------------------------~~---~~~~ee~~---~~~~-v~~~Sa~~g~gl~~Ll 311 (673)
++ .++.+++. +.+. .+..++. . -+..||
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~-p-v~~~LL 335 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFL-P-AADALL 335 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHS-B-HHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhcc-c-hHHHHH
Confidence 10 11222211 0000 0000000 0 037888
Q ss_pred HHHHHHHHhhh-----------------------cccCCCCCeEEEEEEEEeecCCcE-EEEEEeeecEEeeCCEEE-eC
Q psy4665 312 EAIVAQAEIMH-----------------------LKADYGGPVEAMIVESKFDTHRGK-LATALVQRGTLKKGAIVV-AG 366 (673)
Q Consensus 312 ~~i~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~~~G~-v~~~~V~~G~Lk~g~~v~-~g 366 (673)
+++..+.+.+. ..+++++|+.++||++..+++.|+ ++++||++|+|++|+.|. .+
T Consensus 336 d~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~ 415 (842)
T 1n0u_A 336 EMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 415 (842)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEEC
T ss_pred HHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecc
Confidence 88888754221 124678899999999999999995 999999999999999994 22
Q ss_pred Cc----------ceEEEEec------ccccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecC
Q psy4665 367 QA----------WAKVRSIS------RKTLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVE 417 (673)
Q Consensus 367 ~~----------~~kvr~i~------~~~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~ 417 (673)
+. ..+|..++ ..++++|.||++ ++ +.|+++... ..+|++..+
T Consensus 416 ~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI------~a-i~gl~~~~~--~t~Tl~~~~ 473 (842)
T 1n0u_A 416 PNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNI------IG-LVGIDQFLL--KTGTLTTSE 473 (842)
T ss_dssp TTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCE------EE-EESCTTTCC--SSEEEESCT
T ss_pred ccccCCCCcccceEEeeeeEeeccCcccccceeCCCCE------EE-EEcccccee--cceeecCCC
Confidence 21 13444443 568999999999 88 899987643 225998643
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=6.3e-26 Score=249.69 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=176.2
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.++|.+++ ||+...+.. ....+..+......+++.+++++|...+++..+ .++.+++++
T Consensus 37 ~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~-~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d------~~~~~~l~~ 109 (436)
T 2hjg_A 37 VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP-FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD------EEVAKILYR 109 (436)
T ss_dssp ----CEEEECTTCSSCCEEEC---------C-HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH------HHHHHHHTT
T ss_pred CccceEEEEEEECCceEEEEECCCCCCcchh-HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH------HHHHHHHHH
Confidence 7999999999999988 888642222 222344455556777888888999776665444 577888888
Q ss_pred hCCeeEEEc-cCCCcccCcCCcccc--------------------------cCCCCCC-ccccCCCCEEEEEeCCCCChh
Q psy4665 78 SGMKYMVIN-PTNSVADDSNGKDVE--------------------------RRPPADP-SVLMKRPPVVTIMGHVDHGKT 129 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~~~~~--------------------------~~~~~~~-~~~~~~~~~V~ivG~~n~GKS 129 (673)
.+.++.++. |.|.........+.. +..+..+ .......++|+++|++|||||
T Consensus 110 ~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKS 189 (436)
T 2hjg_A 110 TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKS 189 (436)
T ss_dssp CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHH
T ss_pred cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHH
Confidence 899988877 887543211110000 0001000 011235689999999999999
Q ss_pred HHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCC----------Ccchhhhh-hccccCCeEEEEEECC
Q psy4665 130 TLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AAFSNMRS-RGAHCTDIVVLVVAAD 197 (673)
Q Consensus 130 TLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~----------~~f~~~~~-~~~~~aD~~vlVvda~ 197 (673)
||+|+|++.... .+..+++|.+.....+.+ ++..++||||||+ +.|..++. .+++.+|++++|+|++
T Consensus 190 SLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 190 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp HHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 999999988754 667789999887777777 6788999999998 55655544 4778899999999999
Q ss_pred CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH---HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHH
Q psy4665 198 DGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI---ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274 (673)
Q Consensus 198 ~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~---~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 274 (673)
++...++.+++..+...++|+++|+||||+.+.+. ++..+.+.+... +...++++++||++|.|++++++.+.
T Consensus 269 ~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 269 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----GGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----cCCCCCEEEEecccCCCHHHHHHHHH
Confidence 99999999998888889999999999999976432 334333333211 11246899999999999999999998
Q ss_pred HHHHHH
Q psy4665 275 RTKNML 280 (673)
Q Consensus 275 ~~~~~~ 280 (673)
+....+
T Consensus 345 ~~~~~~ 350 (436)
T 2hjg_A 345 KASENH 350 (436)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876543
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=4e-25 Score=244.66 Aligned_cols=265 Identities=17% Similarity=0.228 Sum_probs=183.0
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.++|.++. +|+.. .......+...+......+++.+++++|...+++..+ .++.+++++
T Consensus 57 ~t~~~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d------~~l~~~l~~ 129 (456)
T 4dcu_A 57 VTRDRIYSSAEWLNYDFNLIDTGGIDI-GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD------EEVAKILYR 129 (456)
T ss_dssp ----CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH------HHHHHHHTT
T ss_pred cceeEEEEEEEECCceEEEEECCCCCC-cchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH------HHHHHHHHH
Confidence 7999999999999988 88864 3333344555566667778888888999666665544 688888888
Q ss_pred hCCeeEEEc-cCCCcccCcCCcc--------------------------cccCCCC-CCccccCCCCEEEEEeCCCCChh
Q psy4665 78 SGMKYMVIN-PTNSVADDSNGKD--------------------------VERRPPA-DPSVLMKRPPVVTIMGHVDHGKT 129 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~~~~~~~--------------------------~~~~~~~-~~~~~~~~~~~V~ivG~~n~GKS 129 (673)
.+.++.++. |.|.........+ .....+. .........++|+++|++|+|||
T Consensus 130 ~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKS 209 (456)
T 4dcu_A 130 TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKS 209 (456)
T ss_dssp CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHH
T ss_pred cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHH
Confidence 999988877 8775432111000 0000000 00112345689999999999999
Q ss_pred HHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCC----------CCcchhhhh-hccccCCeEEEEEECC
Q psy4665 130 TLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG----------HAAFSNMRS-RGAHCTDIVVLVVAAD 197 (673)
Q Consensus 130 TLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG----------~~~f~~~~~-~~~~~aD~~vlVvda~ 197 (673)
||+++|++.. ......+++|.+.....+.+ ++.+++|||||| ++.|..++. .++..+|++++|+|++
T Consensus 210 slin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~ 288 (456)
T 4dcu_A 210 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 288 (456)
T ss_dssp HHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 9999999775 55677788998877677777 678999999999 677777655 4778999999999999
Q ss_pred CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHH
Q psy4665 198 DGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274 (673)
Q Consensus 198 ~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 274 (673)
++...++..++..+...++|+++|+||||+.+.+ .++..+.+.+.... ...++++++||++|.|++++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 289 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF----LDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG----GTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc----CCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999997543 34444444443211 1247899999999999999999998
Q ss_pred HHHHHH
Q psy4665 275 RTKNML 280 (673)
Q Consensus 275 ~~~~~~ 280 (673)
+.....
T Consensus 365 ~~~~~~ 370 (456)
T 4dcu_A 365 KASENH 370 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876554
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=5.6e-24 Score=203.66 Aligned_cols=168 Identities=58% Similarity=0.876 Sum_probs=141.5
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
+..+.++|+++|++|+|||||+++|++..+...+.+++|.+.....+.+ ++..+.+|||||++.|..++.+++..+|++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 3467899999999999999999999998887777777877777666777 678999999999999999998899999999
Q ss_pred EEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHH
Q psy4665 191 VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLT 270 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 270 (673)
++|+|++++...++.+.+..+...++|+++|+||+|+...+.++....+.........++..++++++||++|.|+++++
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 99999999888888888888888899999999999998766556555554443333444445799999999999999999
Q ss_pred HHHHHHHHH
Q psy4665 271 EAIERTKNM 279 (673)
Q Consensus 271 ~~i~~~~~~ 279 (673)
+++.+....
T Consensus 163 ~~l~~~~~~ 171 (178)
T 2lkc_A 163 EMILLVSEM 171 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 999876654
No 38
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3.2e-23 Score=228.24 Aligned_cols=266 Identities=17% Similarity=0.214 Sum_probs=180.6
Q ss_pred ecccceeeEEEEeecc------ccccCCCcccccHHHHHHHhhcchhHHHHHhhhcccccccCCccccccHHHHHHHHHH
Q psy4665 4 ITDDHLYEVMMYVDNS------VNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK 77 (673)
Q Consensus 4 ~trd~~~~~~~~~~~~------gg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vd~~~~~~~~~~~l~~~~~~~~~~~~ 77 (673)
+|||+.|+.++|.|+. ||+...........+..+......+++.+++++|...+++..+ .++..++++
T Consensus 35 ~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d------~~i~~~l~~ 108 (439)
T 1mky_A 35 VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED------ESLADFLRK 108 (439)
T ss_dssp ---CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH------HHHHHHHHH
T ss_pred CccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH------HHHHHHHHH
Confidence 7999999999999988 9987533333344556666777888999999999766655443 578888888
Q ss_pred hCCeeEEEc-cCCCccc-CcCC-cccc--------------------------cCCCCCC-c--c--ccCCCCEEEEEeC
Q psy4665 78 SGMKYMVIN-PTNSVAD-DSNG-KDVE--------------------------RRPPADP-S--V--LMKRPPVVTIMGH 123 (673)
Q Consensus 78 ~g~~~~~~~-~~~~~~~-~~~~-~~~~--------------------------~~~~~~~-~--~--~~~~~~~V~ivG~ 123 (673)
.+.++.++. |.|.... .... .+.. +..+... . . .....++|+++|+
T Consensus 109 ~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~ 188 (439)
T 1mky_A 109 STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGR 188 (439)
T ss_dssp HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECS
T ss_pred cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECC
Confidence 899988877 8875321 0000 0000 0000000 0 0 1234579999999
Q ss_pred CCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-----------h-hhccccCCeE
Q psy4665 124 VDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM-----------R-SRGAHCTDIV 190 (673)
Q Consensus 124 ~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~-----------~-~~~~~~aD~~ 190 (673)
+|+|||||+|+|++... ..+..+|+|.+.....+.+ +|..+.+|||||+..+... + ..++..+|++
T Consensus 189 ~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~v 267 (439)
T 1mky_A 189 PNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVV 267 (439)
T ss_dssp TTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEE
Confidence 99999999999998764 4667788998887777777 6889999999998544322 1 2356789999
Q ss_pred EEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 191 VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 191 vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
++|+|++++...+....+..+...++|+++++||||+...+ .++..+.+..... +....+++++||++|.|++
T Consensus 268 llv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 268 VIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY----FIDYSPLIFTSADKGWNID 343 (439)
T ss_dssp EEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG----GGTTSCEEECBTTTTBSHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc----cCCCCcEEEEECCCCCCHH
Confidence 99999999888888777788888899999999999997543 2333333332211 1124689999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy4665 268 NLTEAIERTKNML 280 (673)
Q Consensus 268 ~l~~~i~~~~~~~ 280 (673)
++++.+.+....+
T Consensus 344 ~l~~~i~~~~~~~ 356 (439)
T 1mky_A 344 RMIDAMNLAYASY 356 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876544
No 39
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=9.5e-22 Score=210.39 Aligned_cols=243 Identities=21% Similarity=0.279 Sum_probs=143.0
Q ss_pred cccccHHHHHHHhhcchhHHHHHhhhccc-ccccCCccccccHHHHHHHHHHhCCeeEEEccCCCcccC-----------
Q psy4665 27 SVIYDFQVIIDIIQKSDHLYEVMMYVDNS-VNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADD----------- 94 (673)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------- 94 (673)
+++||+.+|++||++++.+.++.+|++++ +.|..++ +. .|......+-|..+.-.. +..++..
T Consensus 82 ~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~r--l~--~~~~l~~~~~~i~~~g~g-e~~~e~~~~~~~~~i~~l 156 (364)
T 2qtf_A 82 EVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPI--IK--ETYTKSKIGEQQGPLGAG-TYGVESTIKFYKRRINKL 156 (364)
T ss_dssp EEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HH--HC----------------------CHHHHHHHHHHHH
T ss_pred ceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchh--hh--hhhHHHHhcCCCCcCCcC-HHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999988 7788776 22 232221111111111000 0000000
Q ss_pred cCCcccccC--CCCCCccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCC
Q psy4665 95 SNGKDVERR--PPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172 (673)
Q Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG 172 (673)
...+....+ ............+.|+++|++|+|||||+|+|++..+.....+++|.++....+.+ ++..+.++||||
T Consensus 157 ~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G 235 (364)
T 2qtf_A 157 MKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVG 235 (364)
T ss_dssp HHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCEEEEEEeCCC
Confidence 000110000 01111122334567999999999999999999998876677788998888888888 568999999999
Q ss_pred C---------CcchhhhhhccccCCeEEEEEECCCCC--hHhhH-HHHHHHHH---cCCCEEEEEecCCCCCCcHHHHHH
Q psy4665 173 H---------AAFSNMRSRGAHCTDIVVLVVAADDGV--MEQTV-ESIRMARE---AKVPIIVAINKIDKPAADIERTKN 237 (673)
Q Consensus 173 ~---------~~f~~~~~~~~~~aD~~vlVvda~~g~--~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~~~~~~~~ 237 (673)
+ +.|...+. .+..+|++++|+|++++. ..... .+...+.. .+.|+++|.||+|+.+........
T Consensus 236 ~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 314 (364)
T 2qtf_A 236 FIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD 314 (364)
T ss_dssp BCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHH
T ss_pred chhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHH
Confidence 7 22444443 678899999999998865 22222 22233333 478999999999997644322122
Q ss_pred HHHHcCcccccc-CCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 238 MLLAQGITVEDL-GGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 238 ~l~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
.+.... ..+ ....+++++||+++.|++++++++.+....
T Consensus 315 ~~~~l~---~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 315 LVEKLS---KELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHH---HHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 221100 011 123578999999999999999999876544
No 40
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=3.5e-20 Score=194.35 Aligned_cols=209 Identities=26% Similarity=0.340 Sum_probs=147.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch----------hhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS----------NMRS 181 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~----------~~~~ 181 (673)
+.+..|+++|++|||||||+|+|++..+. .+..+++|.+.....+....+.++.||||||+.++. ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34568999999999999999999998865 456677888776666666338899999999996654 4555
Q ss_pred hccccCCeEEEEEECCCCChHhhHHH-HHHHHHcCCCEEEEEecCCCC-CC-cHHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVES-IRMAREAKVPIIVAINKIDKP-AA-DIERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~-l~~~~~~~iP~IvviNK~Dl~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
.++..+|++++|+|++++...++... +..+...++|+++|+||+|+. +. ......+.+.+. ++...+++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~------~~~~~~i~~v 161 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK------HPELTEIVPI 161 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH------CTTCCCEEEC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh------ccCCCeEEEE
Confidence 67899999999999999988888887 777777899999999999997 32 233333333332 1224689999
Q ss_pred eccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEE
Q psy4665 259 SALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVES 338 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~ 338 (673)
||++|.|++++++++.+... ++ ...++....+......+...+.+..-...+..+.+... +.+.+.
T Consensus 162 SA~~g~gv~~L~~~l~~~l~----~~---------~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~-~v~i~~ 227 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP----EG---------EPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSI-AVKINE 227 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC----BC---------CCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHC-EEEEEE
T ss_pred eCCCCCCHHHHHHHHHHhCc----cC---------CCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCee-EEEeEE
Confidence 99999999999999876532 11 11123344555556666666666544333333333333 444454
Q ss_pred Eee
Q psy4665 339 KFD 341 (673)
Q Consensus 339 ~~~ 341 (673)
+..
T Consensus 228 ~~~ 230 (308)
T 3iev_A 228 IKP 230 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=4.8e-20 Score=192.68 Aligned_cols=238 Identities=24% Similarity=0.311 Sum_probs=154.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCC---------cchhhhhhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA---------AFSNMRSRG 183 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~---------~f~~~~~~~ 183 (673)
+..+|+|+|++|||||||+|+|++..+. .+..+++|.+.....+.. ++.+++|+||||+. .|......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 4568999999999999999999998764 345566776655555555 67899999999997 233344567
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+..+|++++|+|+++ ...++...++.+...+.|+++++||+|+.. +.....+.+.+... .+ +...++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~---~~-~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLAS---QM-NFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHHT---TS-CCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHHH---hc-CcCceEEEECCCC
Confidence 889999999999988 888888888888878999999999999975 22333333332211 11 1247899999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHHHHhhhcccCCCCCeEEEEEEEEeecC
Q psy4665 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTH 343 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~~~~~~~~~~~~~~~~~~V~e~~~~~~ 343 (673)
.|++++++.+.+... ++. ..++....++..-..+...+.+..-...+..+.+.. .+++++.+.+..
T Consensus 160 ~~v~~l~~~i~~~l~----~~~---------~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~-~~v~i~~~~~~~ 225 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP----EAT---------HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYS-VTVEIERFVSNE 225 (301)
T ss_dssp TTHHHHHHHHHTTCC----BCC---------CSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTT-EEEEEEEEECCS
T ss_pred CCHHHHHHHHHHhCC----cCC---------CCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEEEEEEecC
Confidence 999999998865321 110 011112223333233333333333222222222333 577777777655
Q ss_pred CcEE---EEEEeeecEEeeCCEEEeCCcceEEEEe
Q psy4665 344 RGKL---ATALVQRGTLKKGAIVVAGQAWAKVRSI 375 (673)
Q Consensus 344 ~G~v---~~~~V~~G~Lk~g~~v~~g~~~~kvr~i 375 (673)
.|.+ +.+.|.+++.| .+++|..+.++|.+
T Consensus 226 ~~~~~i~~~i~v~~~~~k---~i~ig~~G~~~k~i 257 (301)
T 1ega_A 226 RGGYDINGLILVEREGQK---KMVIGNKGAKIKTI 257 (301)
T ss_dssp SCSEEEEEEEEESSHHHH---HHHHCGGGHHHHHH
T ss_pred CCeEEEEEEEEEEECCce---EEEECCCcHHHHHH
Confidence 5655 66667666665 25556555555544
No 42
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=5.7e-20 Score=191.87 Aligned_cols=154 Identities=24% Similarity=0.222 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCc--------chhhhhhcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA--------FSNMRSRGA 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~--------f~~~~~~~~ 184 (673)
+..+|+++|++|+|||||+|+|++..+. .+..+++|.+.....+.. ++.+++||||||+.+ |......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4567999999999999999999998765 355667777655444554 678999999999876 455566788
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+.+|++++|+|++++....+...++.+... ++|+++|+||+|+.+.... ..+.+... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEeCCC
Confidence 999999999999998888777777778777 8999999999999754331 33333332 1235799999999
Q ss_pred CCChhhHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERT 276 (673)
Q Consensus 263 g~gv~~l~~~i~~~ 276 (673)
|.|++++++.+.+.
T Consensus 157 g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 157 ERQVAELKADLLAL 170 (301)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
No 43
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=5.3e-20 Score=179.32 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccc-ccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
....++|+++|++|+|||||+++|++..+.. ...+++. .....+.. .+..+.||||||++.|..++..+++.+|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEK-GRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4566799999999999999999999988766 4444333 33444554 678999999999999999999999999999
Q ss_pred EEEEECCCCChHh-hHHHHHHHHHc-----------CCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 191 VLVVAADDGVMEQ-TVESIRMAREA-----------KVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 191 vlVvda~~g~~~q-~~~~l~~~~~~-----------~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
++|+|++++.... ..+.+..+... ++|+++|+||+|+.+.. .+++.+.+..... .. ...+++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~ 167 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-MG--DHPFVIFA 167 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-HT--TSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-cc--CCeeEEEE
Confidence 9999999875433 33444444433 89999999999997642 2333333221100 01 12468999
Q ss_pred eeccCCCChhhHHHHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
+||++|.|++++++++.+.....
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999998876543
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=3.1e-20 Score=177.44 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=117.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.++++ ..+.+|||||++.|...+..+++.+|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 4578999999999999999999988776555566666666667777432 68999999999999999988999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH-----cCCC-EEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE-----AKVP-IIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~-----~~iP-~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+|+|++++...+.. .++..+.. .+.| +++|+||+|+.+. ..++..+..... .++++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~ 155 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN---------GFSSHFVSAK 155 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCEEEEECTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc---------CCcEEEEeCC
Confidence 99999986544333 33333333 2667 7999999999642 233333333332 2578999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++++++.+..
T Consensus 156 ~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 156 TGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987653
No 45
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.83 E-value=5e-20 Score=183.05 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|.+|+|||||+++|....+...+.+++..++....+...+ ..++.||||+|++.|..++..+++.+|++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 457899999999999999999999998887777777777666666532 2367899999999999999999999999999
Q ss_pred EEECCCCChHhhH-HHHHHHH---HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMAR---EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~---~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|.++....+.. .++..+. ..++|+++|+||+|+.+. +.++..+...+. .++++++||++|.|
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~---------~~~~~e~SAktg~n 162 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL---------NVMFIETSAKAGYN 162 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEEEBTTTTBS
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh---------CCeeEEEeCCCCcC
Confidence 9999985544332 3333333 357899999999999642 344554444444 35799999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++|+.+.+.+
T Consensus 163 V~e~F~~i~~~i 174 (216)
T 4dkx_A 163 VKQLFRRVAAAL 174 (216)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=8.7e-20 Score=175.79 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=122.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++. ..+.||||||++.|...+...++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 34579999999999999999999998877777777777776666666322 47899999999999999998999999999
Q ss_pred EEEECCCCChHhhHH-HHHHHH---HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTVE-SIRMAR---EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~~-~l~~~~---~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+... ++..+. ..++|+++|+||+|+... ...+..+..... .++++++||++|.
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 158 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN---------ELMFLETSALTGE 158 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEecCCCCC
Confidence 999999865544333 222222 357899999999999532 233333333332 3589999999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNMLL 281 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~ 281 (673)
|++++++++.+......
T Consensus 159 gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 159 NVEEAFVQCARKILNKI 175 (186)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999987765444
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=175.98 Aligned_cols=158 Identities=21% Similarity=0.194 Sum_probs=121.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
...++|+++|++|+|||||+++|.+..+.....++++.+.....+.+ ++ ..+.+|||||++.|...+..++..+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34578999999999999999999998887777788888877777777 45 5789999999999999998899999999
Q ss_pred EEEEECCCCChHhhHH-HHHHHHH--cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 191 VLVVAADDGVMEQTVE-SIRMARE--AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 191 vlVvda~~g~~~q~~~-~l~~~~~--~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
++|+|++++...+... ++..+.. .++|+++|+||+|+.+. ............ .++++++||++|.
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM---------GIQLFETSAKENV 156 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 9999999865444432 3333333 25899999999998643 223333333332 2579999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
|++++++++.+.....
T Consensus 157 gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 157 NVEEMFNCITELVLRA 172 (181)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998776544
No 48
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=8.6e-20 Score=177.37 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=123.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..++|+++|++|+|||||+++|++..+.....++++.+.....+.+ ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4578999999999999999999998887777788887777777777 44 47899999999999999998999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.+.. .....+..... .++++++||++|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKNAT 164 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEEECTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCcEEEEeCCCCC
Confidence 9999998544333 233333333 378999999999996542 23333333332 3579999999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNMLL 281 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~ 281 (673)
|++++++++.+......
T Consensus 165 gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999988776554
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=1.6e-19 Score=175.99 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=120.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-------------------------------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG------------------------------- 162 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~------------------------------- 162 (673)
...+|+++|++|+|||||+++|++..+.....++++.++....+.+.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4678999999999999999999998876666666666665555555321
Q ss_pred -------eEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhH-HHHHHHHH-cCCCEEEEEecCCCCC--Cc
Q psy4665 163 -------EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTV-ESIRMARE-AKVPIIVAINKIDKPA--AD 231 (673)
Q Consensus 163 -------~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~-~~l~~~~~-~~iP~IvviNK~Dl~~--~~ 231 (673)
..+.||||||++.|...+...++.+|++++|+|++++...+.. .++..+.. .+.|+++|+||+|+.. ..
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD 165 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCC
Confidence 6799999999999999988899999999999999987554443 33344433 5689999999999532 23
Q ss_pred HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
.++..+.+... .++++++||++|.|++++++++.+....
T Consensus 166 ~~~~~~~~~~~---------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 166 ILEVQKYAQDN---------NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHHHHT---------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 44555444443 3589999999999999999999876544
No 50
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.83 E-value=1.4e-19 Score=171.52 Aligned_cols=158 Identities=25% Similarity=0.185 Sum_probs=116.7
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+.+.++|+++|++|+|||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||++.|...+..+++.+|+++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIP--TIGFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC--CSSEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCC--cCccceEEEEE-CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 3456899999999999999999998877642 222 33444455666 5789999999999999999988999999999
Q ss_pred EEEECCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|++++.... ....+..+.. .++|+++|+||+|+.+.. ..++...+..... . ...++++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL--K--DRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--T--TSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc--c--CCceEEEECcCCCCcC
Confidence 999999864332 2333443332 478999999999997642 3333333321111 1 1245899999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 156 i~~l~~~l~~~i 167 (171)
T 1upt_A 156 LDEAMEWLVETL 167 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997764
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=1e-19 Score=174.34 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=118.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|++..+.....++++.+.....+.+.+ ...+.||||||++.|...+...++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 3457899999999999999999999887766666666666555565532 347999999999999999988999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHHc---CCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMAREA---KVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~~---~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+. ..++..+... ++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN---------GLFFMETSAKTAT 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCSSSCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc---------CCEEEEEECCCCC
Confidence 9999998654333 3444444443 7889999999999643 233444433332 3579999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
|++++++++.+.
T Consensus 161 gi~~l~~~l~~~ 172 (181)
T 2efe_B 161 NVKEIFYEIARR 172 (181)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 52
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.83 E-value=9.7e-20 Score=178.69 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=114.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+..+|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45679999999999999999999988876655566566666666666 34 4899999999999999999899999999
Q ss_pred EEEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCce-eEEEeeccC
Q psy4665 191 VLVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDI-QAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~-~~v~iSA~~ 262 (673)
++|+|+++....+. ..++..+.. .++|+++|+||+|+.+. ..++..+..... .+ +++++||++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~ 176 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY---------DILCAIETSAKD 176 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCSEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHc---------CCCEEEEEeCCC
Confidence 99999998544333 233444443 46899999999999642 334444444333 23 799999999
Q ss_pred CCChhhHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNM 279 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~ 279 (673)
|.|++++++++.+....
T Consensus 177 g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 177 SSNVEEAFLRVATELIM 193 (201)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876543
No 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=5.9e-20 Score=176.64 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=94.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
...+|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|...+...++.+|+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 3578999999999999999999988777666677777776666666 44 57899999999999998888899999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+. ..++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY---------GIKFMETSAKANI 156 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH---------TCEEEECCC---C
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc---------CCeEEEEeCCCCC
Confidence 9999998544333 334444443 37899999999999653 234444443333 2579999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
|++++++++.+.....
T Consensus 157 ~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 157 NVENAFFTLARDIKAK 172 (183)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998766543
No 54
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=2.1e-19 Score=174.09 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=119.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|++..+.....++++.+.....+.... ...+.||||||++.|...+...+..+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 3457999999999999999999999887665555555555545555422 347899999999999999998999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+. ..++..+.. .++|+++|+||+|+.+. ..+...+..... .++++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL---------GFEFFEASAKENI 170 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 9999998544433 334444544 37899999999999642 233333333332 2579999999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNM 279 (673)
Q Consensus 265 gv~~l~~~i~~~~~~ 279 (673)
|++++++++.+....
T Consensus 171 gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 171 NVKQVFERLVDVICE 185 (189)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876544
No 55
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=4.4e-20 Score=173.24 Aligned_cols=150 Identities=22% Similarity=0.315 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCc-------chhhhhhccccC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-------FSNMRSRGAHCT 187 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-------f~~~~~~~~~~a 187 (673)
++|+++|++|+|||||+++|.+..+. ....+++|.+.....+.. ++..+.+|||||+.. +...+...++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 68999999999999999999988753 445567777777677776 677999999999987 344455677899
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
|++++|+|++++...........+...++|+++|+||+|+.+.. +. +. .+..++ ..+++++||++|.|++
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~----~~----~~~~~~-~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-LY----LG----PLYGLG-FGDPIPTSSEHARGLE 150 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-GG----CG----GGGGGS-SCSCEECBTTTTBSHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-Hh----HH----HHHhCC-CCCeEEEecccCCChH
Confidence 99999999999877766667777777899999999999997531 11 11 111121 2368999999999999
Q ss_pred hHHHHHHHH
Q psy4665 268 NLTEAIERT 276 (673)
Q Consensus 268 ~l~~~i~~~ 276 (673)
++++++.+.
T Consensus 151 ~l~~~l~~~ 159 (161)
T 2dyk_A 151 ELLEAIWER 159 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 56
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=9.4e-20 Score=178.65 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=115.4
Q ss_pred CccccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccc
Q psy4665 108 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAH 185 (673)
Q Consensus 108 ~~~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~ 185 (673)
...+.....+|+++|++|+|||||+++|.+..+.....++++..... .+.+ ++ ..+.||||||++.|..++..++.
T Consensus 18 ~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 95 (201)
T 2gco_A 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYP 95 (201)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred CCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcC
Confidence 33445566799999999999999999999988766655655555432 3444 33 47889999999999999988999
Q ss_pred cCCeEEEEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHc---Cc------cccccCCc
Q psy4665 186 CTDIVVLVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQ---GI------TVEDLGGD 252 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~---~~------~~~~~~~~ 252 (673)
.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+...... .+.+... .. .+....+.
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHT--RRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHH--HHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccc--hhhhcccccCcCCHHHHHHHHHhCCC
Confidence 99999999999985443332 334444444 8999999999999754211 1111100 00 00000112
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
.+++++||++|.|++++++++.+..
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999987654
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=2.6e-19 Score=170.83 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=116.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+.++|+++|++|+|||||+++|++..+.....++++.+.....+.+ ++ ..+.||||||++.|...+...++.+|+++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4578999999999999999999998877666666666666666666 34 47899999999999999998999999999
Q ss_pred EEEECCCCChHhhHH-HHHHHH---H----cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 192 LVVAADDGVMEQTVE-SIRMAR---E----AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 192 lVvda~~g~~~q~~~-~l~~~~---~----~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+|+|++++...+... ++..+. . .++|+++|+||+|+... ..++..+..... ...+++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~ 156 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN--------GDYPYFETSAK 156 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT--------TCCCEEECCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc--------CCceEEEEeCC
Confidence 999999865443322 222222 2 57899999999999632 333443333321 13679999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++++++.+..
T Consensus 157 ~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 157 DATNVAAAFEEAVRRV 172 (177)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 58
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=3.3e-20 Score=184.56 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=121.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc--cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----------chhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS--VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----------FSNMR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~--~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----------f~~~~ 180 (673)
.+.++|+++|++|+|||||+++|++.. ......+++|.+.....+...++..+.||||||+.. |..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356899999999999999999999886 245566778887766665534567899999999633 34444
Q ss_pred hhcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCcccccc-----CC
Q psy4665 181 SRGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDL-----GG 251 (673)
Q Consensus 181 ~~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~-----~~ 251 (673)
..++ ..+|++++|+|++++.......++..+...++|+++|+||+|+..... ....+.+.+. +..+ ..
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 183 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKS---LDAYRDAGYAG 183 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHH---HHHHHHHTCCS
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHH---HHhhhhcccCC
Confidence 3344 448889999999998888888888888888999999999999975321 1122222111 1111 23
Q ss_pred ceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 252 DIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 252 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
..+++++||++|.|++++++++.+...
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 578999999999999999999987653
No 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=2.4e-19 Score=175.57 Aligned_cols=161 Identities=13% Similarity=0.096 Sum_probs=121.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..++|+++|++|+|||||+++|++..+.....++++.+.....+.... ...+.||||||++.|...+...++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 457899999999999999999999887665555555555545555532 3478999999999999999989999999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+. ..++..+.. .++|+++|+||+|+.+. ..+...+..... .++++++||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL---------GFEFFEASAKDNIN 157 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH---------TCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC---------CCeEEEEECCCCCC
Confidence 999998654333 233344443 47899999999999653 233333333332 24799999999999
Q ss_pred hhhHHHHHHHHHHHHHhC
Q psy4665 266 VDNLTEAIERTKNMLLAQ 283 (673)
Q Consensus 266 v~~l~~~i~~~~~~~~~~ 283 (673)
++++++++.+.....+.+
T Consensus 158 i~~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 158 VKQTFERLVDVICEKMSE 175 (203)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998877655543
No 60
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.4e-19 Score=177.89 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+.++|+++|++|+|||||+++|++..+.....++++.+.....+.+ ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999998877666677777776666766 34 47899999999999999998999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ---------DMYYLETSAKESD 174 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCCEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999986543332 23333332 47899999999999632 233333333222 3579999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
|++++++++.+.....
T Consensus 175 gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 175 NVEKLFLDLACRLISE 190 (201)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998766443
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.82 E-value=5.1e-20 Score=174.25 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|++..+.....++++.+.....+.+++ ...+.||||||++.|..++...++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 46899999999999999999999887766667777777666666632 24789999999999998888889999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChh
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 267 (673)
+|++++...+.. .++..+.. .++|+++|+||+|+... ..+...+..... .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL---------GIPFIESSAKNDDNVN 153 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH---------TCCEEECBTTTTBSHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc---------CCeEEEEECCCCCCHH
Confidence 999986543332 33333433 37899999999999542 233333333332 2479999999999999
Q ss_pred hHHHHHHHHHH
Q psy4665 268 NLTEAIERTKN 278 (673)
Q Consensus 268 ~l~~~i~~~~~ 278 (673)
++++++.+...
T Consensus 154 ~l~~~l~~~~~ 164 (170)
T 1g16_A 154 EIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 62
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.1e-19 Score=171.93 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=110.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc-ccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
.+..+|+++|++|+|||||+++|.+..+.. ...++++.+.....+.. ++ ..+.+|||||++.|..++...+..+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456789999999999999999999888743 44566666666555555 44 378999999999999998889999999
Q ss_pred EEEEEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 190 VVLVVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+++|+|++++...+.. .++..+.. .++|+++|+||+|+... ..+...+..... .++++++||++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 157 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY---------GLPFMETSAKT 157 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH---------TCCEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc---------CCeEEEEeCCC
Confidence 9999999986544332 33334433 57899999999999753 233333333332 25799999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
|.|++++++++.+...
T Consensus 158 ~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999977653
No 63
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=175.14 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=116.3
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+.++|+++|++|+|||||+++|.+.. +..... .|.......+.+ ++..+.||||||++.|...+...+..+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEEC-SSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999877 333332 344455556666 578999999999999999998899999999
Q ss_pred EEEEECCCCChHh-hHHHHHHHHH------cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 191 VLVVAADDGVMEQ-TVESIRMARE------AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q-~~~~l~~~~~------~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
++|+|++++...+ ....+..+.. .++|+++|+||+|+.+. +.++..+.+....+ . ...++++++||++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI--K--DKPWHICASDAIK 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC--C--SSCEEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc--c--CCceEEEEccCCC
Confidence 9999999854332 2334444333 47899999999999754 33444433321111 0 1246899999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
|.|++++++++.+...
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987643
No 64
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.82 E-value=1.8e-19 Score=174.97 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=118.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ...+.||||||++.|..++...++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4457899999999999999999999887766666666666666666632 247899999999999998888999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH---------GLIFMETSAKTAC 169 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 9999998554433 233444443 37899999999999642 233333333332 3579999999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNMLL 281 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~ 281 (673)
|++++++++.+......
T Consensus 170 gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKI 186 (191)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999987665443
No 65
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=1.5e-19 Score=173.69 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=115.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+.. ++. .+.+|||||++.|..++..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 4567899999999999999999998877666656555544 344444 444 466799999999999998899999999
Q ss_pred EEEEECCCCChHhhH-HHHHHH----HHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc-
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMA----REAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL- 261 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~----~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~- 261 (673)
++|+|++++...+.. .++..+ ...++|+++|+||+|+.+. ..++..+..... .++++++||+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 164 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY---------NIPYIETSAKD 164 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH---------TCCEEEEBCSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh---------CCeEEEeccCC
Confidence 999999986433332 222222 2357899999999999642 333444444333 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++++++.+..
T Consensus 165 ~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SCBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987754
No 66
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=6e-20 Score=187.36 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=118.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh----------hhhhcc-
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN----------MRSRGA- 184 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~----------~~~~~~- 184 (673)
|+|+++|++|+|||||+|+|++.....+..+++|.+.....+.+ ++..+.||||||+.+|.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 68999999999999999999999888888899999888888887 678999999999988864 233344
Q ss_pred -ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 185 -HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 185 -~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
..+|++++|+|+++ .........++...++|+++|+||+|+.... .....+.+.+. + .++++++||++
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~------l--g~~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL------L--GCSVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH------H--CSCEEECBGGG
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH------c--CCCEEEEECCC
Confidence 78999999999997 4455666777778899999999999984321 00001112111 1 36899999999
Q ss_pred CCChhhHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERT 276 (673)
Q Consensus 263 g~gv~~l~~~i~~~ 276 (673)
|.|++++++++.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 67
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=1.2e-19 Score=171.44 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=115.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|++..+.....+.++.+.....+.... +..+.+|||||++.|...+...++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 457899999999999999999998877655555555555444555532 4578999999999999998888999999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+. ..++..+.. .++|+++|+||+|+.+. +.++..+..... ..+++++||++|.|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN---------SLLFMETSAKTSMN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 999998654333 333344443 36889999999998542 233333333332 35799999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 156 i~~l~~~i~~~ 166 (170)
T 1r2q_A 156 VNEIFMAIAKK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 68
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.82 E-value=1e-19 Score=171.88 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ...+.+|||||++.|..++...++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 457899999999999999999999877666666666666666666632 3478999999999999888888999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH--cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE--AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~--~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++....+.. .++..+.. .+.|+++|+||+|+.+. ..++..+..... .++++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL---------KLRFYRTSVKEDLNV 154 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCEEEECBTTTTBSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------CCeEEEEecCCCCCH
Confidence 9999985433332 33333333 48999999999998642 233333333332 257999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T 1z2a_A 155 SEVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=1e-19 Score=175.19 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=112.3
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
....+..+|+++|++|+|||||+++|.+..+. ...+ |.......+.+ ++..+.+|||||++.|..++...+..+|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCE-EEEC--CSSSSCEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCC--cCceeeEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 33456789999999999999999999988762 2222 22222344555 67899999999999999999889999999
Q ss_pred EEEEEECCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 190 VVLVVAADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 190 ~vlVvda~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+++|+|+++....+ ....+..+.. .++|+++|+||+|+.+. +.+++.+.+..... ....++++++||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI----KDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc----cCCceEEEEccCCCC
Confidence 99999999864433 3344444432 57899999999999753 23333332211100 112468999999999
Q ss_pred CChhhHHHHHHH
Q psy4665 264 TNVDNLTEAIER 275 (673)
Q Consensus 264 ~gv~~l~~~i~~ 275 (673)
.|++++++++.+
T Consensus 168 ~gi~~l~~~l~~ 179 (181)
T 2h17_A 168 EGLCQGLEWMMS 179 (181)
T ss_dssp BTHHHHHHHHHT
T ss_pred cCHHHHHHHHHh
Confidence 999999998864
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=177.13 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=113.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
...++|+++|++|+|||||+++|.+..+.....++++.+.....+.+.+ ...+.||||||++.|..++...++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3457899999999999999999999887666666666666666666632 247899999999999999888999999999
Q ss_pred EEEECCCCChHhhHHH-HHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTVES-IRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~~~-l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+.... +..+.. .++|+++|+||+|+.+. ..++..+..... ...+++++||++|.
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQI--------TGMRFCEASAKDNF 175 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS--------TTCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhc--------CCCeEEEEeCCCCC
Confidence 9999998655544332 233333 47899999999999642 222332222211 13689999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|++++++++.+..
T Consensus 176 gi~~l~~~l~~~i 188 (192)
T 2il1_A 176 NVDEIFLKLVDDI 188 (192)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987654
No 71
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=1.8e-19 Score=169.98 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|.+..+.....+++..... ..+... ....+.+|||||++.|..++...++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999988766555454443332 334442 234788999999999999998899999999999
Q ss_pred EECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+++....+. ..++..+.. .++|+++++||+|+.+. ..++..+..... ...+++++||++|.|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--------CNCAFLESSAKSKIN 153 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--------TSCEEEECBTTTTBS
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc--------cCCcEEEecCCCCCC
Confidence 99998543332 223333322 47899999999999642 233333333222 136899999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 154 i~~l~~~l~~~i 165 (167)
T 1c1y_A 154 VNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=1.5e-19 Score=171.32 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=107.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh------hhhhcc--cc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN------MRSRGA--HC 186 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~------~~~~~~--~~ 186 (673)
.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.+ ++..+.+|||||++.|.. +...++ ..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 468999999999999999999988766666777777766666766 578999999999988752 223333 37
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-H-HHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-I-ERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|++++|+|+++. .....++..+...++|+++|+||+|+.... . ....+..... ..+++++||++|.
T Consensus 82 ~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~SA~~~~ 150 (165)
T 2wji_A 82 PDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL---------GVKVVPLSAAKKM 150 (165)
T ss_dssp CSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBGGGTB
T ss_pred CCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHh---------CCCEEEEEcCCCC
Confidence 9999999999872 333445566666789999999999984211 0 0111111221 2578999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
|++++++++.+.
T Consensus 151 ~v~~l~~~l~~~ 162 (165)
T 2wji_A 151 GIEELKKAISIA 162 (165)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=3.1e-19 Score=172.60 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=119.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEE-EEEEEecC----------CeEEEEEeCCCCCcchhhhhh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG-AFVVTLKS----------GEQVTFLDTPGHAAFSNMRSR 182 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~-~~~v~~~~----------~~~i~liDTpG~~~f~~~~~~ 182 (673)
+.++|+++|++|+|||||+++|.+..+.....++++.+.. ...+...+ ...+.||||||++.|...+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4578999999999999999999988776555555555554 34454432 248999999999999999998
Q ss_pred ccccCCeEEEEEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCcee
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
.++.+|++++|+|++++...+. ..++..+.. .++|+++|+||+|+.+. ..+...+..... .++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~ 160 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY---------GIP 160 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCC
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCC
Confidence 9999999999999998655444 333444443 57899999999999642 233333333332 257
Q ss_pred EEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 255 AVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
++++||++|.|++++++++.+.....
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998776543
No 74
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=1.7e-19 Score=170.71 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|++..+.....++++.+.....+...+ ...+.+|||||++.|..++...++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 357899999999999999999998887666666666666656666532 2368899999999999998888999999999
Q ss_pred EEECCCCChHhhH-HHHHHHH---HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMAR---EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~---~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+.. .++..+. ..++|+++++||+|+.+. ..++..+..... ..+++++||++|.|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV---------GAKHYHTSAKQNKG 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEEBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecCCCCCC
Confidence 9999985543332 2333333 357899999999999642 233444433332 25789999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 156 i~~l~~~l~~~~ 167 (170)
T 1z08_A 156 IEELFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 75
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=1.8e-19 Score=171.92 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=117.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.... ...+.||||||++.|...+...++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 3467999999999999999999999887665555555555555555532 347899999999999999988999999999
Q ss_pred EEEECCCCChHhhHH-HHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTVE-SIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~~-~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+... ++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN---------GLLFLEASAKTGE 163 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCT
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 999999865444332 2333332 57899999999999542 233444444332 3589999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|++++++++.+..
T Consensus 164 gi~~l~~~l~~~i 176 (179)
T 1z0f_A 164 NVEDAFLEAAKKI 176 (179)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987653
No 76
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.82 E-value=1.9e-19 Score=169.53 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....+.+.... ...+...+ ...+.||||||++.|..++...++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 357899999999999999999998876554444433332 23344422 2478999999999999999989999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++....... .++..+.. .++|+++++||+|+.+. ..++..+..... .++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW---------NVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc---------CCeEEEeCCCCCC
Confidence 9999985443322 22233332 37899999999999642 234444444332 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTK 277 (673)
Q Consensus 265 gv~~l~~~i~~~~ 277 (673)
|++++++++.+..
T Consensus 153 gi~~l~~~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFFDLMREI 165 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987654
No 77
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.81 E-value=2.2e-19 Score=171.83 Aligned_cols=158 Identities=23% Similarity=0.220 Sum_probs=107.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC--CeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS--GEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~--~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|++..+.....++++.+.....+.+.+ ...+.+|||||++.|...+...++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 3567899999999999999999999887766666666666666666532 35789999999999999988899999999
Q ss_pred EEEEECCCCChHhhHH-HHHHHHH-------cCCCEEEEEecCCCCCC----cHHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 191 VLVVAADDGVMEQTVE-SIRMARE-------AKVPIIVAINKIDKPAA----DIERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 191 vlVvda~~g~~~q~~~-~l~~~~~-------~~iP~IvviNK~Dl~~~----~~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
++|+|++++...+... ++..+.. .++|+++++||+|+... ..++..+..... ...+++++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~--------~~~~~~~~ 157 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL--------GDIPLFLT 157 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT--------TSCCEEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc--------CCCeEEEE
Confidence 9999999865443332 2233322 57899999999999542 223333222211 24679999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~~ 278 (673)
||++|.|++++++++.+...
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 158 SAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999977653
No 78
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.81 E-value=2e-19 Score=171.95 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=116.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|++..+.....+++..... ..+.. ++ ..+.||||||++.|..++...+..+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999998766555554444443 44455 33 4788999999999999888889999999
Q ss_pred EEEEECCCCChHhh-HHHHHHH----HHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 191 VLVVAADDGVMEQT-VESIRMA----REAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~-~~~l~~~----~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
++|+|+++...... ..++..+ ...++|+++|+||+|+.+. ..+......... .++++++||++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 155 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH---------HVAYFEASAKL 155 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecCCC
Confidence 99999998543322 2222222 2357899999999999642 223332222222 35899999999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~~~ 281 (673)
|.|++++++++.+......
T Consensus 156 ~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999988765543
No 79
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=1.3e-19 Score=174.28 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+|+++|++|+|||||+++|.+..+.....+.+.... ...+.. ++ ..+.+|||||++.|..++...++.+|+++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 356899999999999999999998876555444333222 233444 33 35779999999999999888899999999
Q ss_pred EEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHc---Cc------cccccCCceeEEEe
Q psy4665 192 LVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQ---GI------TVEDLGGDIQAVPI 258 (673)
Q Consensus 192 lVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~---~~------~~~~~~~~~~~v~i 258 (673)
+|+|++++...+.. .++..+... ++|+++|+||+|+..... ..+.+... .. .+....+..+++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch--hhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 99999986544443 244444443 899999999999965321 11111110 00 00000112489999
Q ss_pred eccCCCChhhHHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~ 277 (673)
||++|.|++++++++.+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHH
Confidence 9999999999999987653
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=2.3e-19 Score=173.89 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=116.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..+..+|+++|++|+|||||+++|.+..+.....+++..+. ..+.. .+..+.||||||++.|..++..++..+|+++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEe-CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 34568999999999999999999998877654444443333 34554 6789999999999999999988899999999
Q ss_pred EEEECCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|+++....+ ....+..+.. .++|+++|+||+|+.+. +.+++.+.+ +.... .....+++++||++|.|
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM---NLSAI-QDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT---TGGGC-CSSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHh---Chhhh-ccCCeeEEEEECCCCCC
Confidence 999999854333 2334444432 57899999999999764 233332222 11110 11346899999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 172 v~~l~~~l~~~ 182 (188)
T 1zd9_A 172 IDITLQWLIQH 182 (188)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 81
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.81 E-value=2.3e-19 Score=176.24 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=121.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ...+.||||||++.|...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 457899999999999999999999888777777777777666666632 2379999999999999998889999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+.. .++..+.. .++|+++|+||+|+.+. ..+...+..... .++++++||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN---------KMPFLETSALDSTN 157 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 9999986544433 23334433 46899999999999653 223333333222 25799999999999
Q ss_pred hhhHHHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKNML 280 (673)
Q Consensus 266 v~~l~~~i~~~~~~~ 280 (673)
++++++++.+.....
T Consensus 158 i~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 158 VEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776543
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.81 E-value=3.4e-19 Score=171.90 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=116.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|++|+|||||+++|.+.. .....+ |.......+.+ ++..+.+|||||++.|...+...++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456899999999999999999999877 333333 33344455666 67899999999999999999889999999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|++++...+. ...+..+.. .++|+++|+||+|+.+. +.++..+.+..... ....++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI----RSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc----cCCceEEEEeeCCCCCCH
Confidence 999998654333 334444433 47899999999999764 23333322211100 012468999999999999
Q ss_pred hhHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKN 278 (673)
Q Consensus 267 ~~l~~~i~~~~~ 278 (673)
+++++++.+...
T Consensus 168 ~~l~~~l~~~i~ 179 (186)
T 1ksh_A 168 LPGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 83
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=1.8e-19 Score=175.22 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=115.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+..+|+++|++|+|||||+++|.+..+.....+++...... .+.. ++. .+.||||||++.|..++..+++.+|++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 345789999999999999999999988765555555444432 3444 343 568999999999999999999999999
Q ss_pred EEEEECCCCChHhh--HHHHHHHHHc--CCCEEEEEecCCCCCC-----cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 191 VLVVAADDGVMEQT--VESIRMAREA--KVPIIVAINKIDKPAA-----DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 191 vlVvda~~g~~~q~--~~~l~~~~~~--~iP~IvviNK~Dl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
++|+|+++...... ..++..+... ++|+++|+||+|+... ..++..+.....+. ..++++||+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 170 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC--------VAYIEASSV 170 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC--------SCEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC--------CEEEEeecC
Confidence 99999998654443 2233344433 6899999999999642 23344444433321 239999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++++++.+..
T Consensus 171 ~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCI 186 (194)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987754
No 84
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.81 E-value=3.2e-19 Score=171.95 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+|+++|++|+|||||+++|.+..+.....+.+ .+.....+.. ++. .+.||||||++.|..++..++..+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35689999999999999999999887655544433 3333344445 344 4778999999999999998999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+.. .+......... ..+++++||++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY---------GIPFIETSAKTRQ 151 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH---------TCCEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc---------CCeEEEEeCCCCC
Confidence 99999985443332 23333332 478999999999997532 33333333332 2579999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
|++++++++.+.....
T Consensus 152 gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 152 GVDDAFYTLVREIRKH 167 (189)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998776543
No 85
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=3.8e-19 Score=175.33 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
...++|+++|++|+|||||+++|++..+.....++++.+.....+.+ ++ ..+.||||||++.|..++..++..+|++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999988877666777777777667776 44 5789999999999998888889999999
Q ss_pred EEEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 191 VLVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 191 vlVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
++|+|++++...+. ..++..+.. .++|+++|+||+|+... ..+...+..... .++++++||++|.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL---------GIPFIESSAKNDD 167 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH---------TCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999998544333 233334433 37899999999999532 223333333332 2479999999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNMLL 281 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~ 281 (673)
|++++++++.+......
T Consensus 168 gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 168 NVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999988765544
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=4.7e-19 Score=172.18 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=112.7
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..+..+|+++|++|+|||||+++|.+..+.. . ..|.......+.+ ++..+.+|||||++.|..++..+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-L--QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCC-C--CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCc-c--ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3456799999999999999999999877542 2 2233334455666 5789999999999999998888899999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCcccc---ccCCceeEEEeeccC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVE---DLGGDIQAVPISALT 262 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~---~~~~~~~~v~iSA~~ 262 (673)
+|+|++++...+. ...+..+.. .++|+++|+||+|+.+. +.++..+.+......-. .....++++++||++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 9999998654332 333343332 57899999999999763 23333332221110000 011346899999999
Q ss_pred CCChhhHHHHHHH
Q psy4665 263 GTNVDNLTEAIER 275 (673)
Q Consensus 263 g~gv~~l~~~i~~ 275 (673)
|.|++++++++.+
T Consensus 176 g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 176 RNGYLEAFQWLSQ 188 (190)
T ss_dssp TBSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 87
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.81 E-value=4.2e-19 Score=169.39 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=118.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC-eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG-EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~-~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|++..+.....++++.+.....+.+.+. ..+.+|||||++.|...+...+..+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3478999999999999999999988877777777777777666766322 478999999999999998888999999999
Q ss_pred EEECCCCChHhh-HHHHHHHH---HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMAR---EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~---~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+. ..++..+. ..++|+++|+||+|+.+. ...+........ .++++++||++|.|
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL---------NVMFIETSAKAGYN 163 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEEEBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 999998544332 23333333 247899999999999642 233333333332 35899999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 164 i~~l~~~l~~~ 174 (179)
T 2y8e_A 164 VKQLFRRVAAA 174 (179)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=4e-19 Score=167.29 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=111.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA 195 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvd 195 (673)
.+|+++|++|+|||||+++|.+..+.. ..+ |.......+.. ++..+.+|||||++.|..++...++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEE-CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 379999999999999999998876543 233 33344445555 57899999999999999998888999999999999
Q ss_pred CCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 196 ADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 196 a~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
++++.... ....+..+.. .+.|+++|+||+|+.+.. ..++...+ +..... ...++++++||++|.|++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSLR-HRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT---TGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHh---Cccccc-CccEEEEEcccCCCcCHHHH
Confidence 99864333 2334444433 378999999999997642 23332222 211100 12467999999999999999
Q ss_pred HHHHHHHH
Q psy4665 270 TEAIERTK 277 (673)
Q Consensus 270 ~~~i~~~~ 277 (673)
++++.+..
T Consensus 153 ~~~l~~~i 160 (164)
T 1r8s_A 153 LDWLSNQL 160 (164)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99987653
No 89
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.81 E-value=1.6e-19 Score=173.35 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+.++|+++|++|+|||||+++|.+..+.....+.+.... ...+.. ++ ..+.||||||++.|..++...++.+|+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 457899999999999999999998776655555444443 344444 44 46789999999999988888889999999
Q ss_pred EEEECCCCChHhhHH-HHHHH----HHcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 192 LVVAADDGVMEQTVE-SIRMA----REAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 192 lVvda~~g~~~q~~~-~l~~~----~~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+|+++....+... ++..+ ...++|+++|+||+|+... ..++..+..... .++++++||++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW---------NAAFLESSAKEN 153 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCTTSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh---------CCcEEEEecCCC
Confidence 999999854433322 22222 2347899999999999643 233444433333 357999999999
Q ss_pred CChhhHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNM 279 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~ 279 (673)
.|++++++++.+....
T Consensus 154 ~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 154 QTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876543
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=3.1e-19 Score=174.77 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=108.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|++|||||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||++.|..++..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTI-AGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEE-TTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEE-CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 456789999999999999999999876532 222 22223345566 56899999999999999998888999999999
Q ss_pred EEECCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCcc-------cc-ccCCceeEEEe
Q psy4665 193 VVAADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGIT-------VE-DLGGDIQAVPI 258 (673)
Q Consensus 193 Vvda~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~-------~~-~~~~~~~~v~i 258 (673)
|+|++++...+ ....+..+.. .++|+++|+||+|+.+. +.++..+.+...... +. ......+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 99999864333 2333444332 47899999999999753 344444433321100 00 01134789999
Q ss_pred eccCCCChhhHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIER 275 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~ 275 (673)
||++|.|++++++++.+
T Consensus 179 SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp BTTTTBSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999864
No 91
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.81 E-value=1.9e-19 Score=169.38 Aligned_cols=153 Identities=21% Similarity=0.170 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|++|+|||||+++|.+..+.....+.++.. ....+.. ++ ..+.||||||++.|..++...+..+|++++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999887665544444322 2344444 33 358899999999999999888999999999
Q ss_pred EEECCCCChHhh-HHHHHHHH----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMAR----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++....+. ...+..+. ..++|+++|+||+|+... ......+..... .++++++||++|.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 151 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW---------GCPFMETSAKSKT 151 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TSCEEEECTTCHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh---------CCCEEEecCCCCc
Confidence 999998544332 22333332 247899999999998542 223333333332 2479999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 152 gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 152 MVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999977653
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=4.5e-19 Score=171.41 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=112.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|++|+|||||+++|.+..+. ...+ |.......+.+ ++..+.+|||||++.|..++...+..+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999987765 2223 23333344555 57899999999999999998888999999999
Q ss_pred EEECCCCChH-hhHHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVME-QTVESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~-q~~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|++++... .....+..+.. .++|+++|+||+|+.+. +.+++.+.+..... . ...++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI--K--DHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--C--SSCEEEEECBTTTTBTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh--c--CCCcEEEEccCCCCcCH
Confidence 9999986433 33344444443 47899999999999753 23343333322101 1 12468999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 166 ~~l~~~l~~~~ 176 (187)
T 1zj6_A 166 CQGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 93
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.2e-19 Score=173.43 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=115.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|++..+.....+.+..+.....+... ....+.||||||++.|...+...+..+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 456799999999999999999999887654444444444444444443 3457999999999999999988999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++|.
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI---------GAIVVETSAKNAI 171 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT---------TCEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCc
Confidence 99999986554433 33344443 37899999999999642 233343333322 3589999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
|++++++++.+.
T Consensus 172 gi~~l~~~l~~~ 183 (192)
T 2fg5_A 172 NIEELFQGISRQ 183 (192)
T ss_dssp SHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 94
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=5.9e-19 Score=166.73 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ...+.+|||||++.|...+...++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 36799999999999999999998887666666666665555555532 24789999999999999998899999999999
Q ss_pred EECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC------cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 194 VAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA------DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 194 vda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~------~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|++++...+.. .++..+.. .++|+++++||+|+... ..+...+..... .++++++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK---------GLLFFETSAKTG 153 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH---------TCEEEECCTTTC
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 999986444333 33333332 37899999999999543 122222222222 357999999999
Q ss_pred CChhhHHHHHHH
Q psy4665 264 TNVDNLTEAIER 275 (673)
Q Consensus 264 ~gv~~l~~~i~~ 275 (673)
.|++++++++.+
T Consensus 154 ~gi~~l~~~l~~ 165 (170)
T 1ek0_A 154 ENVNDVFLGIGE 165 (170)
T ss_dssp TTHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 999999998864
No 95
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=3.1e-19 Score=196.45 Aligned_cols=190 Identities=21% Similarity=0.230 Sum_probs=128.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc---------hhhhhhccc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF---------SNMRSRGAH 185 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f---------~~~~~~~~~ 185 (673)
|+|+++|++|+|||||+|+|++.+.. ....+|+|.+.....+.+ ++..+.+|||||++.+ ...+..++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999988753 567789999988888888 6889999999998652 334456789
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHH-HHcCccccccCCceeEEEeeccCCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNML-LAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l-~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
.||++++|+|++++...........++..++|+++|+||+|+... ..... .+. ..++ ..+++++||++|.
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~~----~~lg-~~~~~~iSA~~g~ 151 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPEL----YSLG-FGEPIPVSAEHNI 151 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHH----GGGS-SCSCEECBTTTTB
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHHH----HhcC-CCCEEEEeccCCC
Confidence 999999999999998887777777777789999999999998531 01111 111 1111 1257899999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 265 NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
|++++++++.+....... ....+.......-+.+-...|.|-..|+..|..
T Consensus 152 gv~~L~~~i~~~l~~~~~-~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGL-DLESKPEITDAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SHHHHHHHHHHHHHHTTC-CSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcccccc-cchhccccccCceEEEECCCCCCHHHHHHHHhC
Confidence 999999999776542110 100100011122234456678999999998864
No 96
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=3.8e-19 Score=174.51 Aligned_cols=158 Identities=22% Similarity=0.197 Sum_probs=119.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|++..+.....++++.+.....+...+ ...+.||||||++.|..++...++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 3467899999999999999999999887766667777777666666633 247899999999999998888899999999
Q ss_pred EEEECCCCChHhhHHH-HHHHHH-------cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 192 LVVAADDGVMEQTVES-IRMARE-------AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 192 lVvda~~g~~~q~~~~-l~~~~~-------~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+|+|++++...+.... +..+.. .++|+++|+||+|+... ..+......... ...+++++||+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~ 157 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK--------NNIPYFETSAK 157 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT--------TSCCEEECBTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhc--------CCceEEEEeCC
Confidence 9999998654433332 222221 47899999999999743 223333322211 24679999999
Q ss_pred CCCChhhHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKN 278 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~ 278 (673)
+|.|++++++++.+...
T Consensus 158 ~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 158 EAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999977653
No 97
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=5.1e-19 Score=172.00 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=113.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+.+.+ ...+.||||||++.|..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 457899999999999999999998876555444443333 33444422 2578899999999999999889999999999
Q ss_pred EEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCc---------------HHHHHHHHHHcCccccccCCce
Q psy4665 193 VVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAAD---------------IERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 193 Vvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~---------------~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
|+|+++....+.. .++..+... ++|+++|+||+|+.+.. .++..+.....+ ..
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~ 167 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--------AC 167 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--------CS
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC--------Cc
Confidence 9999986544333 344555554 89999999999997532 122222222221 23
Q ss_pred eEEEeeccCCCChhhHHHHHHHHH
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+++++||++|.|++++++++.+..
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999987653
No 98
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=173.41 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=107.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
..+.++|+++|++|+|||||+++|++..+.....+.++.+.....+.+++ ...+.||||||++.|..++...++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34568999999999999999999998876555445444444445555532 24689999999999999998889999999
Q ss_pred EEEEECCCCChHhhHH-HHHHHHH---cCCCEEEEEecCCCCCC---------cHHHHHHHHHHcCccccccCCceeEEE
Q psy4665 191 VLVVAADDGVMEQTVE-SIRMARE---AKVPIIVAINKIDKPAA---------DIERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 191 vlVvda~~g~~~q~~~-~l~~~~~---~~iP~IvviNK~Dl~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
++|+|++++...+... ++..+.. .++|+++|+||+|+.+. ..+...+..... .+++++
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~ 175 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY---------GALFCE 175 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH---------TCEEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc---------CCeEEE
Confidence 9999999865544433 3333333 37899999999998521 112222222222 357999
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||++|.|++++++++.+..
T Consensus 176 ~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987653
No 99
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=2.4e-19 Score=176.38 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=111.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+..+|+++|++|+|||||+++|++..+.....+.+ .+.....+.. ++. .+.||||||++.|...+..+++.+|++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-EEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-cceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 456899999999999999999999887765544433 3333344444 343 566999999999999999899999999
Q ss_pred EEEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHcC---c------cccccCCceeEEE
Q psy4665 191 VLVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQG---I------TVEDLGGDIQAVP 257 (673)
Q Consensus 191 vlVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~~---~------~~~~~~~~~~~v~ 257 (673)
++|+|++++...+.. .++..+... ++|+++|+||+|+.+.... .+.+.+.. . .+....+..++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT--IEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHH--HHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhh--hhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 999999986655443 344455544 8999999999999653221 11111100 0 0011112357999
Q ss_pred eeccCCCChhhHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIER 275 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~ 275 (673)
+||++|.|++++++++.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHH
Confidence 999999999999999865
No 100
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=171.92 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=117.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+.++|+++|++|+|||||+++|++..+.....++++.+.....+... .+..+.||||||++.|..++...++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 345799999999999999999999988765555555555544444442 2357899999999999999888999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++..... ..++..+.. .++|+++|+||+|+... ..+......... .++++++||++|.
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN---------GLLFLETSALDST 173 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 9999998654333 333444443 37899999999999642 233333333322 3579999999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNM 279 (673)
Q Consensus 265 gv~~l~~~i~~~~~~ 279 (673)
|++++++++.+....
T Consensus 174 gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 174 NVELAFETVLKEIFA 188 (193)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998776543
No 101
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=173.00 Aligned_cols=158 Identities=22% Similarity=0.176 Sum_probs=108.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
..+..+|+++|++|+|||||+++|.+..+.....+++. +.....+.. ++. .+.||||||++.|..++...+..+|+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 45678999999999999999999998876544444332 332334444 443 67799999999999998888999999
Q ss_pred EEEEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCc---------------HHHHHHHHHHcCccccccC
Q psy4665 190 VVLVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAAD---------------IERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~---------------~~~~~~~l~~~~~~~~~~~ 250 (673)
+++|+|+++....... .++..+... ++|+++|+||+|+.... .++........
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 166 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI-------- 166 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc--------
Confidence 9999999986544443 233444433 88999999999996421 11222222221
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
+..+++++||++|.|++++++++.+....
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 12379999999999999999999876543
No 102
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=3.5e-19 Score=172.88 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=111.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccc--------cceeeeEEEEE--E-Eec-CCeEEEEEeCCCCCcchhhhh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--------GGITQHIGAFV--V-TLK-SGEQVTFLDTPGHAAFSNMRS 181 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~--------~g~T~~~~~~~--v-~~~-~~~~i~liDTpG~~~f~~~~~ 181 (673)
+..+|+++|++|+|||||++.+.+........ ...|....... + ... ....+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 45789999999999999997776543222110 11122222111 1 111 234789999999999999999
Q ss_pred hccccCCeEEEEEECCCCChHhhHHHHHHHHH---------cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCC
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVESIRMARE---------AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGG 251 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~---------~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~ 251 (673)
.+++.+|++++|+|++++...+..+.+..+.. .++|+++|+||+|+.+. ..++..+.+...
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--------- 163 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE--------- 163 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT---------
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc---------
Confidence 99999999999999997766655554443332 47899999999999764 334444333222
Q ss_pred ce-eEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 252 DI-QAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 252 ~~-~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.+ +++++||++|.|++++++++.+.....
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 24 799999999999999999998766543
No 103
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.80 E-value=2.9e-19 Score=177.16 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=116.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|.+|+|||||+++|.+..+.....+++..... ..+... ....+.||||||++.|..++...++.+|+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 45679999999999999999999998877665565554442 233332 2357899999999999999998999999999
Q ss_pred EEEECCCCChHhh--HHHHHHHHHc--CCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCc
Q psy4665 192 LVVAADDGVMEQT--VESIRMAREA--KVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGD 252 (673)
Q Consensus 192 lVvda~~g~~~q~--~~~l~~~~~~--~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~ 252 (673)
+|+|+++...... ..++..+... ++|+++|+||+|+.+. ..++..+..... .
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~ 174 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL---------G 174 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH---------T
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc---------C
Confidence 9999998655443 2344445443 7899999999999642 223333333332 2
Q ss_pred e-eEEEeeccCCCC-hhhHHHHHHHHHH
Q psy4665 253 I-QAVPISALTGTN-VDNLTEAIERTKN 278 (673)
Q Consensus 253 ~-~~v~iSA~~g~g-v~~l~~~i~~~~~ 278 (673)
+ +++++||++|.| ++++++++.+...
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 4 799999999998 9999999987653
No 104
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.80 E-value=5.1e-19 Score=170.06 Aligned_cols=155 Identities=21% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|.+..+.....+.+.... ...+.. ++ ..+.||||||++.|..++...+..+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 3457899999999999999999998876554444433332 333444 33 3788999999999999999899999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
++|+|+++....+.. .++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 164 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW---------NVNYVETSAKT 164 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCeEEEeCCCC
Confidence 999999985433222 22233322 37899999999999642 233444444332 35799999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
|.|++++++++.+...
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 165 RANVDKVFFDLMREIR 180 (187)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 105
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.4e-19 Score=175.46 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=111.2
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccC
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCT 187 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~a 187 (673)
.+....++|+++|++|+|||||+++|.+..+.....++++.... ..+.. ++ ..+.||||||++.|..++..++..+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 33445679999999999999999999998876555454444433 23444 33 4788999999999999988899999
Q ss_pred CeEEEEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHHHHcC---cc------ccccCCcee
Q psy4665 188 DIVVLVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADIERTKNMLLAQG---IT------VEDLGGDIQ 254 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l~~~~---~~------~~~~~~~~~ 254 (673)
|++++|+|+++....+.. .++..+... ++|+++|+||+|+..... ..+.+.... .. +....+..+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH--VRTELARMKQEPVRTDDGRAMAVRIQAYD 175 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH--HHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc--chhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence 999999999985433332 334444443 899999999999965321 111111110 00 000011237
Q ss_pred EEEeeccCCCChhhHHHHHHHHH
Q psy4665 255 AVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
++++||++|.|++++++++.+..
T Consensus 176 ~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 176 YLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997754
No 106
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=1.2e-19 Score=174.05 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=103.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|.+..+.....+++..... ..+... ....+.+|||||++.|...+...++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45689999999999999999999988765444333322211 112221 2345679999999999999998999999999
Q ss_pred EEEECCCCChHhhHH--HHHHHHH--cCCCEEEEEecCCCCCCcH-------------HHHHHHHHHcCccccccCCcee
Q psy4665 192 LVVAADDGVMEQTVE--SIRMARE--AKVPIIVAINKIDKPAADI-------------ERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 192 lVvda~~g~~~q~~~--~l~~~~~--~~iP~IvviNK~Dl~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|+|+++....+... ++..+.. .++|+++|+||+|+.+... ++..+.....+ ..+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~ 156 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG--------APA 156 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT--------CSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC--------CCE
Confidence 999999865444432 3444444 2789999999999865322 12222222221 247
Q ss_pred EEEeeccCCCChhhHHHHHHHH
Q psy4665 255 AVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
++++||++|.|++++++++.+.
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999998765
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.8e-19 Score=171.74 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=118.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+.. ...+.||||||++.|..++...++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999999887666666666666555555532 3578999999999999998889999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...... .++..+.. .++|+++|+||+|+.... .+...+..... .++++++||++|.|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH---------SMLFIEASAKTCDG 164 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT---------TCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc---------CCEEEEecCCCCCC
Confidence 9999986544433 33344443 368999999999995432 33333333332 35799999999999
Q ss_pred hhhHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKN 278 (673)
Q Consensus 266 v~~l~~~i~~~~~ 278 (673)
++++++++.+...
T Consensus 165 i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 165 VQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877653
No 108
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=172.27 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=115.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|.+..+.....+.+.... ...+.+ ++ ..+.||||||++.|..++..++..+|++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3567999999999999999999998876554444433332 344455 33 3788999999999999998889999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
++|+|+++....... .++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 160 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW---------NVNYVETSAKT 160 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEEECTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh---------CCeEEEEeCCC
Confidence 999999985443332 23333332 37899999999999642 234444444333 25799999999
Q ss_pred CCChhhHHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKNM 279 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~~ 279 (673)
|.|++++++++.+....
T Consensus 161 g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 161 RANVDKVFFDLMREIRA 177 (206)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876543
No 109
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=5.5e-19 Score=167.24 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=109.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|.+..+.....+++..... ..+... ....+.+|||||+++|..++...+..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 468999999999999999999988765444443333222 223332 224689999999999999988889999999999
Q ss_pred EECCCCChHh-hHHHHHHHHH-----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 194 VAADDGVMEQ-TVESIRMARE-----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 194 vda~~g~~~q-~~~~l~~~~~-----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+++..... ...++..+.. .++|+++|+||+|+... ............ .++++++||++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 152 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW---------KCAFMETSAKLNH 152 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEECBTTTTB
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEecCCCCc
Confidence 9999854332 2334444433 37899999999998542 122222222222 3579999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
|++++++++.+.
T Consensus 153 gi~~l~~~l~~~ 164 (172)
T 2erx_A 153 NVKELFQELLNL 164 (172)
T ss_dssp SHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 110
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=5.4e-19 Score=167.14 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=114.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....+.+..+.....+.+.. ...+.+|||||++.|...+...++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 357899999999999999999999886555445444444444455432 3578999999999999998888999999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|++++...+.. .++..+.. .++|+++|+||+|+.+. ..+......... ..+++++||++|.|
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI---------HAIFVETSAKNAIN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCcC
Confidence 9999986554443 33344443 36789999999999642 122333222222 35799999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 156 i~~l~~~i~~~ 166 (170)
T 1z0j_A 156 INELFIEISRR 166 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 111
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=174.50 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=112.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|++..+.....++++.+.....+.. ++ ..+.||||||++.|..++...++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 34679999999999999999999998877666677776666666666 34 5799999999999988888889999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
++|+|++++...+.. .++..+.. .++|+++|+||+|+... ...+..+..... .++++++||++|
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~SA~~g 172 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN---------ELMFLETSALTG 172 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 999999986544433 33333332 47899999999999532 233333333332 358999999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~ 281 (673)
.|++++++++.+......
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 173 ENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999987765443
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=4.5e-19 Score=181.14 Aligned_cols=153 Identities=23% Similarity=0.273 Sum_probs=118.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh------hhhcc--c
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM------RSRGA--H 185 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~------~~~~~--~ 185 (673)
+.++|+++|++|+|||||+|+|++..+.....+|+|.+.....+.. ++..+.||||||+..|... ....+ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 3578999999999999999999998887888889999888777776 6789999999999888642 22233 5
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
.+|++++|+|+++. .....++..+...++|+++|+||+|+..... ....+..... .++++++||++|
T Consensus 83 ~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---------g~~vi~~SA~~g 151 (258)
T 3a1s_A 83 DADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL---------GIPVVFTSSVTG 151 (258)
T ss_dssp CCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH---------CSCEEECCTTTC
T ss_pred CCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc---------CCCEEEEEeeCC
Confidence 79999999999974 3445566777788999999999999842110 0111222222 258999999999
Q ss_pred CChhhHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKN 278 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~ 278 (673)
.|++++++++.+...
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999987643
No 113
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.80 E-value=2.8e-19 Score=176.50 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+...+ ...+.||||||++.|..++..+++.+|++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 457899999999999999999998877555444443332 23344422 2478999999999999999889999999999
Q ss_pred EEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCc-----------HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 193 VVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAAD-----------IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 193 Vvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
|+|+++....+.. .++..+... ++|+++|+||+|+.+.. .++..+.....+ ..++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~ 158 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG--------AAAYIE 158 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT--------CSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC--------CceEEE
Confidence 9999986544333 344444443 89999999999996532 222222222222 247999
Q ss_pred eeccCCCChhhHHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~ 278 (673)
+||++|.|++++++++.+...
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999877653
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=1.1e-18 Score=174.63 Aligned_cols=163 Identities=15% Similarity=0.249 Sum_probs=113.2
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCC------c----chhhh
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA------A----FSNMR 180 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~------~----f~~~~ 180 (673)
...+.++|+++|.+|+|||||+++|++..+.....+++|.+.....+.. ++..+.||||||+. . |....
T Consensus 25 ~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 25 INPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 3456789999999999999999999998877666677787777666666 57899999999993 3 22222
Q ss_pred hhccccCCeEEEEEECCCCCh---HhhHHHHHHHHHc--CCCEEEEEecCCCCCCc-H-HHHHHHHHHcCccccccCCce
Q psy4665 181 SRGAHCTDIVVLVVAADDGVM---EQTVESIRMAREA--KVPIIVAINKIDKPAAD-I-ERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 181 ~~~~~~aD~~vlVvda~~g~~---~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~-~-~~~~~~l~~~~~~~~~~~~~~ 253 (673)
.....+|++++|+|+++... ..+...+..+... ++|+++|+||+|+.+.. . ......+.... ...+...
T Consensus 104 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~ 179 (228)
T 2qu8_A 104 -ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQIL---DNVKNPI 179 (228)
T ss_dssp -HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHH---HHCCSCE
T ss_pred -HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHH---HhcCCCc
Confidence 24677899999999998644 2344556666655 89999999999996531 1 11111111110 0111126
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
+++++||++|.|++++++++.+...
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 115
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=165.63 Aligned_cols=155 Identities=21% Similarity=0.163 Sum_probs=102.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcccccc-ccceeeeEEEEEEEecC-CeEEEEEeCCCCCc--chhhhhhccccCCe
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGITQHIGAFVVTLKS-GEQVTFLDTPGHAA--FSNMRSRGAHCTDI 189 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~-~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~--f~~~~~~~~~~aD~ 189 (673)
+.++|+++|++|+|||||+++|.+..+.... ..+.+ .....+.+++ ...+.+|||||++. +..+....++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4578999999999999999999988754332 23333 3334455532 23688999999988 55666667788999
Q ss_pred EEEEEECCCCChHhhH-HHHHHHHHc----CCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 190 VVLVVAADDGVMEQTV-ESIRMAREA----KVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~-~~l~~~~~~----~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++|+|+++....+.. .++..+... ++|+++|+||+|+.+. ..++........ .++++++||+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 151 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF---------DCKFIETSAT 151 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH---------TSEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc---------CCeEEEEecC
Confidence 9999999985443333 334444443 7899999999999653 223322222222 2579999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~~ 279 (673)
+|.|++++++++.+....
T Consensus 152 ~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 152 LQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999876543
No 116
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=3e-19 Score=172.98 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=115.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcch-hhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFS-NMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~-~~~~~~~~~aD~~ 190 (673)
.+.++|+++|++|+|||||+++|++..+.....++++.+.....+.+.+ ...+.||||||++.|. .++...++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4568999999999999999999999887766666666666666666632 2478999999999998 7777788999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHH----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMAR----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
++|+|+++....+.. .++..+. ..++|+++|+||+|+.+. ..+......... .++++++||++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 168 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH---------SMPLFETSAKN 168 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCCEEECCSSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc---------CCEEEEEeCCc
Confidence 999999985443332 2233332 347899999999999643 223333322222 35799999999
Q ss_pred C---CChhhHHHHHHHH
Q psy4665 263 G---TNVDNLTEAIERT 276 (673)
Q Consensus 263 g---~gv~~l~~~i~~~ 276 (673)
| .|++++++++.+.
T Consensus 169 ~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp GGGGSCHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHH
Confidence 9 9999999988654
No 117
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=2.7e-19 Score=177.30 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=119.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-----------CeEEEEEeCCCCCcchhhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-----------GEQVTFLDTPGHAAFSNMRS 181 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-----------~~~i~liDTpG~~~f~~~~~ 181 (673)
.+..+|+++|++|+|||||+++|++..+.....++++.++....+.+.+ ...+.||||||++.|...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 3457899999999999999999999887655555555555555555532 35799999999999999988
Q ss_pred hccccCCeEEEEEECCCCChHhhHH-HHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCce
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQTVE-SIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDI 253 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~~~-~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~ 253 (673)
..++.+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.+. ..+...+..... .+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~---------~~ 173 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY---------GI 173 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC---------CC
Confidence 8999999999999999855444333 2222222 46899999999999642 233333333332 25
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHH
Q psy4665 254 QAVPISALTGTNVDNLTEAIERTKNMLL 281 (673)
Q Consensus 254 ~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 281 (673)
+++++||++|.|++++++++.+......
T Consensus 174 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 174 PYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999987765443
No 118
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=7.8e-19 Score=169.96 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+|+++|++|+|||||+++|++..+.....+.++.. ....+.. ++ ..+.||||||++.|..++...+..+|+++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEE-TTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 45799999999999999999999887655444433322 2334444 33 35889999999999999888999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+... ..++..+..... .++++++||++|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 168 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY---------GIPFIETSAKTRQ 168 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH---------TCCEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc---------CCeEEEEeCCCCC
Confidence 99999986543333 22333332 37899999999998652 334444443333 2479999999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNM 279 (673)
Q Consensus 265 gv~~l~~~i~~~~~~ 279 (673)
|++++++++.+....
T Consensus 169 gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 169 GVEDAFYTLVREIRQ 183 (190)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876644
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=1.2e-19 Score=187.15 Aligned_cols=151 Identities=22% Similarity=0.343 Sum_probs=117.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh----------hhhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM----------RSRG 183 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~----------~~~~ 183 (673)
+.++|+++|++|+|||||+|+|++.....++.+|+|.+.....+.+ .+..+.||||||+.+|... ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3578999999999999999999999888888899999888888877 5678999999999887732 1112
Q ss_pred --cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEEee
Q psy4665 184 --AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 184 --~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
...+|++++|+|+++ .........++...++|+++|+||+|+..... .......... .++++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---------g~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL---------GCPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH---------TSCEEECC
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc---------CCCEEEEE
Confidence 268999999999987 34556667777788999999999999853210 0111111111 35899999
Q ss_pred ccCCCChhhHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERT 276 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~ 276 (673)
|++|.|++++++++.+.
T Consensus 150 A~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRY 166 (274)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999999988653
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=1.3e-18 Score=167.71 Aligned_cols=156 Identities=21% Similarity=0.193 Sum_probs=112.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+.++|+++|++|+|||||+++|.+..+.. . ..|.......+.+ ++..+.+|||||++.|...+..++..+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~--~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-I--TPTQGFNIKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-E--EEETTEEEEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-c--cCcCCeEEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 456899999999999999999999875432 1 1223333445556 57899999999999999998888999999999
Q ss_pred EEECCCCChHhh-HHHHHHHH----HcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQT-VESIRMAR----EAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~----~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++...... ...+..+. ..++|+++++||+|+.+.. .+++.+.+ +.... ....++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL---NLHTI-RDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT---TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHh---Cchhc-cCCceEEEEccCCCCCCH
Confidence 999998644332 23333332 2478999999999997643 22322222 11100 112468999999999999
Q ss_pred hhHHHHHHHH
Q psy4665 267 DNLTEAIERT 276 (673)
Q Consensus 267 ~~l~~~i~~~ 276 (673)
+++++++.+.
T Consensus 166 ~~l~~~l~~~ 175 (181)
T 1fzq_A 166 QDGMNWVCKN 175 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.80 E-value=5.6e-19 Score=171.55 Aligned_cols=156 Identities=21% Similarity=0.312 Sum_probs=111.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc--cccccceeeeEEEEEEEecCCeEEEEEeCCC----------CCcchhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQHIGAFVVTLKSGEQVTFLDTPG----------HAAFSNMR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~--~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG----------~~~f~~~~ 180 (673)
.+.++|+++|++|+|||||+++|++..+. ....++.|...... .. +.++.+||||| ++.|..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 46789999999999999999999987633 23345556554433 23 23799999999 55666666
Q ss_pred hhccccC---CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHH-cCccccccCCceeE
Q psy4665 181 SRGAHCT---DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLA-QGITVEDLGGDIQA 255 (673)
Q Consensus 181 ~~~~~~a---D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~ 255 (673)
...+..+ |++++|+|++++......+.++.+...++|+++|+||+|+.... .....+.+.+ ... ....++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-----DPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----CTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----cCCCce
Confidence 6555555 99999999999888888777888888899999999999997543 2222333332 211 124689
Q ss_pred EEeeccCCCChhhHHHHHHHHH
Q psy4665 256 VPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 256 v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+++||++|.|++++++++.+..
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999987653
No 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.80 E-value=8.6e-19 Score=165.90 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=100.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchh-hhhhccccCCeEEEE
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSN-MRSRGAHCTDIVVLV 193 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~-~~~~~~~~aD~~vlV 193 (673)
.+|+++|++|+|||||+++|.+........+..+.+.....+..++ ...+.+|||||++.|.. ++...++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 5799999999999999999988766555555556666656666632 24678999999999876 555567889999999
Q ss_pred EECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 194 VAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+++....+. ..++..+.. .++|+++|+||+|+.+. ..+...+..... .++++++||++|.|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSAALHHN 153 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTTBS
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc---------CCcEEEecCccCCC
Confidence 99998543333 233333333 27899999999998632 233333333332 35899999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 154 v~~l~~~l~~~i 165 (169)
T 3q85_A 154 TRELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 123
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=1.1e-18 Score=163.70 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLV 193 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlV 193 (673)
..+|+++|++|+|||||+++|.+..+.....+.+.... ...+...+ ...+.+|||||++.|..++...+..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35799999999999999999998876554444333222 33344422 24578999999999999988889999999999
Q ss_pred EECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC--cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 194 VAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA--DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 194 vda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
+|+++....+. ..++..+.. .++|+++++||+|+... ......+..... .++++++||++|.|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY---------GIPYIETSAKTRQGV 152 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH---------TCCEEEECTTTCTTH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc---------CCeEEEecCCCCCCH
Confidence 99998544332 233333333 27999999999998653 233333333332 247999999999999
Q ss_pred hhHHHHHHHHH
Q psy4665 267 DNLTEAIERTK 277 (673)
Q Consensus 267 ~~l~~~i~~~~ 277 (673)
+++++++.+..
T Consensus 153 ~~l~~~l~~~~ 163 (166)
T 2ce2_X 153 EDAFYTLVREI 163 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=9.5e-19 Score=170.32 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=110.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.. ++..+.+|||||++.|...+...+..+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE--ETTEEEEEEEE-TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC--cCceeEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3456899999999999999999999877653 222 44444455665 6789999999999999999888899999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|++++...+. ...+..+.. .++|+++|+||+|+.+.. .+++.+.+ +..... ...++++++||++|.|
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~~~-~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL---GLQHLR-SRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT---TGGGCS-SCCEEEEECBTTTTBT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh---Cccccc-CCceEEEECcCCCcCC
Confidence 9999998643332 334444333 378999999999997542 23333222 211110 1246899999999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++++.+.
T Consensus 178 i~~l~~~l~~~ 188 (192)
T 2b6h_A 178 LYDGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 125
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=172.62 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=114.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+.++|+++|++|+|||||+++|.+..+.....++++... ...+... .+..+.||||||++.|..++..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4568999999999999999999999887765555544443 2233221 3567899999999999999988999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+... ............ .++++++||++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~ 171 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW---------GATFMESSAREN 171 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECCTTCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh---------CCeEEEEeCCCC
Confidence 99999985444333 23333332 37899999999998642 223333333332 358999999999
Q ss_pred CChhhHHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKNM 279 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~ 279 (673)
.|++++++++.+....
T Consensus 172 ~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 172 QLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999876543
No 126
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=6e-19 Score=170.69 Aligned_cols=158 Identities=20% Similarity=0.141 Sum_probs=115.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|++|+|||||+++|....+.. ..+ |.......+.+ ++..+.+|||||++.|...+...++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVP--TVGVNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECS--STTCCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCC--CCceEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 456899999999999999999998876543 223 33333445555 57899999999999999988888999999999
Q ss_pred EEECCCCChHh-hHHHHHHHHH----cCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQ-TVESIRMARE----AKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q-~~~~l~~~~~----~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|++++...+ ....+..+.. .++|+++|+||+|+.+.. .+++.+.+..... . ...++++++||++|.|+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI--M--NRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC--C--SSCEEEEECCTTTCTTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc--c--CCceEEEEccCCCccCH
Confidence 99999864333 2333444433 378999999999997642 2333332211110 1 12458999999999999
Q ss_pred hhHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKN 278 (673)
Q Consensus 267 ~~l~~~i~~~~~ 278 (673)
+++++++.+...
T Consensus 172 ~~l~~~l~~~i~ 183 (189)
T 2x77_A 172 VEGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=5.3e-19 Score=169.76 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=111.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+.++|+++|++|+|||||+++|.+..+ ....+ |.......+.+ ++..+.+|||||++.|...+...+..+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKP--TIGFNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECS--STTCCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCC--cCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4578999999999999999999998776 22222 22233344555 57899999999999999998889999999999
Q ss_pred EEECCCCChHh-hHHHHHHHH----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQ-TVESIRMAR----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q-~~~~l~~~~----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|++++...+ ....+..+. ..++|+++|+||+|+.+. +.+++.+.+..... ....++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL----KDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC----CSSCEEEEEEBGGGTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc----cCCceEEEEccCCCCcCH
Confidence 99999864433 334444443 257899999999999754 23333332211110 112468999999999999
Q ss_pred hhHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKN 278 (673)
Q Consensus 267 ~~l~~~i~~~~~ 278 (673)
+++++++.+...
T Consensus 168 ~~l~~~l~~~~~ 179 (183)
T 1moz_A 168 TEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 128
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=6.3e-19 Score=181.45 Aligned_cols=152 Identities=20% Similarity=0.254 Sum_probs=120.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh------hhhhcc--c
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN------MRSRGA--H 185 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~------~~~~~~--~ 185 (673)
+.++|+++|++|+|||||+|+|++..+..+..+++|.+.....+.+ ++..+.+|||||+.+|.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 3578999999999999999999999888888899999988888887 678899999999988876 233333 5
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcC-CCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAK-VPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~-iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
.+|++++|+|++++ .+....+..+...+ +|+++++||+|+... ..+ ........ .++++++||+
T Consensus 81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~l---------g~~~~~~Sa~ 148 (271)
T 3k53_A 81 NADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID-IKKMRKEL---------GVPVIPTNAK 148 (271)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHH---------SSCEEECBGG
T ss_pred CCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH-HHHHHHHc---------CCcEEEEEeC
Confidence 79999999999984 45666777777778 999999999997421 111 11111121 3579999999
Q ss_pred CCCChhhHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKN 278 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~ 278 (673)
+|.|++++++++.+...
T Consensus 149 ~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 149 KGEGVEELKRMIALMAE 165 (271)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 129
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=1.1e-18 Score=164.53 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=92.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcccc-ccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|++|+|||||+++|.+..... ....+.+.. ..+... ....+.+|||||++.|..++...++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 4689999999999999999998765432 222333332 223332 23468899999999999999889999999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 193 VVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
|+|+++....+. ..++..+.. .++|+++|+||+|+.+. ..+......... .++++++||++|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 149 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF---------DCKFIETSAALHH 149 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT---------TCEEEECBGGGTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh---------CCcEEEeccCCCC
Confidence 999998544333 333444443 37899999999999653 222322222222 3589999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 150 gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 150 NVQALFEGVVRQIR 163 (166)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=174.56 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=94.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+...+ ...+.||||||++.|..++...+..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4567999999999999999999998876555444443332 33344422 237889999999999999988899999999
Q ss_pred EEEECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCCcH---------------HHHHHHHHHcCccccccCCc
Q psy4665 192 LVVAADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAADI---------------ERTKNMLLAQGITVEDLGGD 252 (673)
Q Consensus 192 lVvda~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~~~---------------~~~~~~l~~~~~~~~~~~~~ 252 (673)
+|+|++++...+.. .++..+.. .++|+++|+||+|+..... ++..+..... +.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~ 182 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV--------GA 182 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------TC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc--------CC
Confidence 99999985544333 23344443 3789999999999965421 1111111111 12
Q ss_pred eeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
.+++++||++|.|++++++++.+..
T Consensus 183 ~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 183 VAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999987764
No 131
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.5e-19 Score=172.92 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=118.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|++..+.....+..+.+.....+... .+..+.||||||++.|..++...++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 346799999999999999999999887655554544444444445443 4568999999999999999998999999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.+. ..+......... .++++++||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL---------GFDFFEASAKENI 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 9999998544333 333444444 47899999999998542 233333333332 3579999999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKNML 280 (673)
Q Consensus 265 gv~~l~~~i~~~~~~~ 280 (673)
|++++++++.+.....
T Consensus 172 gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 172 SVRQAFERLVDAICDK 187 (191)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998776543
No 132
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.5e-19 Score=170.39 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=111.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|.+..+.....+++..... ..+... ....+.||||||++.|..++...+..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34578999999999999999999988765544444332222 223332 2347899999999999999888899999999
Q ss_pred EEEECCCCChHhh-HHHHHHHHH-----cCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMARE-----AKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~~-----~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.... .+......... .++++++||++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW---------KCAFMETSAKMN 155 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH---------TCEEEECBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh---------CCeEEEEecCCC
Confidence 9999998543322 223333332 378999999999997532 23333333222 257999999999
Q ss_pred CChhhHHHHHHHH
Q psy4665 264 TNVDNLTEAIERT 276 (673)
Q Consensus 264 ~gv~~l~~~i~~~ 276 (673)
.|++++++++.+.
T Consensus 156 ~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 156 YNVKELFQELLTL 168 (199)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998765
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.79 E-value=3.2e-19 Score=176.89 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=112.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
....+|+++|++|+|||||+++|++..+.....+.++.......+...++ ..+.||||||++.|..++...+..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 34578999999999999999999987765544444443333333333233 5799999999999998888888999999
Q ss_pred EEEEECCCCChHhhHH-HHHHH---HHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 191 VLVVAADDGVMEQTVE-SIRMA---REAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 191 vlVvda~~g~~~q~~~-~l~~~---~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
++|+|++++...+... ++..+ ...++|+++|+||+|+.+..... .+....... ....+++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS-KKLVMEVLK-----GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC-HHHHHHHTT-----TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-HHHHHHHHH-----HcCCcEEEEecCCCCCH
Confidence 9999999876554442 22333 33478999999999996531110 111111110 11468999999999999
Q ss_pred hhHHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKNM 279 (673)
Q Consensus 267 ~~l~~~i~~~~~~ 279 (673)
+++++++.+....
T Consensus 163 ~~l~~~l~~~~~~ 175 (218)
T 4djt_A 163 GLPFLHLARIFTG 175 (218)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 134
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.79 E-value=2.2e-19 Score=176.00 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC--ccccccccceeeeEEEEEEEecC---CeEEEEEeCCCCCcchhhhhhccccC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT--SVVKSEFGGITQHIGAFVVTLKS---GEQVTFLDTPGHAAFSNMRSRGAHCT 187 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~--~~~~~~~~g~T~~~~~~~v~~~~---~~~i~liDTpG~~~f~~~~~~~~~~a 187 (673)
....+|+++|++|+|||||+++|.+. .+.....+++..++....+.+++ ...+.||||||++.|..++...+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 34579999999999999999999988 55544444444455556666643 45899999999999999999899999
Q ss_pred CeEEEEEECCCCChHhh-HHHHHHHHH------cCCCEEEEEecCCCCC-C---cHHHHHHHHHHcCccccccCCceeEE
Q psy4665 188 DIVVLVVAADDGVMEQT-VESIRMARE------AKVPIIVAINKIDKPA-A---DIERTKNMLLAQGITVEDLGGDIQAV 256 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~-~~~l~~~~~------~~iP~IvviNK~Dl~~-~---~~~~~~~~l~~~~~~~~~~~~~~~~v 256 (673)
|++++|+|++++...+. ..++..+.. .++|+++|+||+|+.+ . ..++..+..... .++++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~---------~~~~~ 168 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN---------TLDFF 168 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT---------TCEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc---------CCEEE
Confidence 99999999998654333 334444443 4789999999999975 2 233444443332 25899
Q ss_pred EeeccC-CCChhhHHHHHHHHHHH
Q psy4665 257 PISALT-GTNVDNLTEAIERTKNM 279 (673)
Q Consensus 257 ~iSA~~-g~gv~~l~~~i~~~~~~ 279 (673)
++||++ |.|++++++++.+....
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp ECCC-------CHHHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHHHH
Confidence 999999 99999999999876543
No 135
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=7e-19 Score=173.89 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=108.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC--CeEEEEEeCCCCCcchh-hhhhccccCCe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS--GEQVTFLDTPGHAAFSN-MRSRGAHCTDI 189 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~--~~~i~liDTpG~~~f~~-~~~~~~~~aD~ 189 (673)
.+.++|+++|++|+|||||+++|++..+.... ++++.+.. .+.+++ +..+.+|||||++.|.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45689999999999999999999988765443 33444433 355532 56899999999999988 77778899999
Q ss_pred EEEEEECCCCC--hHhhHHHHHHH-H-----HcCCCEEEEEecCCCCCC-cHHHHHHHHHHc-C----------------
Q psy4665 190 VVLVVAADDGV--MEQTVESIRMA-R-----EAKVPIIVAINKIDKPAA-DIERTKNMLLAQ-G---------------- 243 (673)
Q Consensus 190 ~vlVvda~~g~--~~q~~~~l~~~-~-----~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~-~---------------- 243 (673)
+++|+|+++.. .....+.|..+ . ..++|+++|+||+|+... ..+...+.+... .
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998721 11222333222 1 236899999999999754 333333333211 0
Q ss_pred ----cccc---------ccCCceeEEEeeccCC------CChhhHHHHHHHH
Q psy4665 244 ----ITVE---------DLGGDIQAVPISALTG------TNVDNLTEAIERT 276 (673)
Q Consensus 244 ----~~~~---------~~~~~~~~v~iSA~~g------~gv~~l~~~i~~~ 276 (673)
.... .+...++++++||++| .|++++++++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000 1112678999999999 9999999998764
No 136
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.4e-19 Score=175.70 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+.+ ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4578999999999999999999998877666666666666666666 44 47899999999999999888999999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|+|++++...+.. .++..+.. .++|+++|+||+|+... ..++..+..... .++++++||++|.
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN---------QLLFTETSALNSE 161 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCCC-CC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999986554433 33344443 37899999999999642 233333333322 3589999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 162 gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 162 NVDKAFEELINTIY 175 (223)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999877643
No 137
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=1.3e-19 Score=173.27 Aligned_cols=149 Identities=23% Similarity=0.303 Sum_probs=112.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh--------hhhccc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM--------RSRGAH 185 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~--------~~~~~~ 185 (673)
..+|+++|++|+|||||+++|.+... .....+++|.+.....+.+ ++..+.+|||||++++... ....++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45799999999999999999998764 3455678888877777777 5778999999998764311 113578
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHH---cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMARE---AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~---~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
.+|++++|+|+++........++..+.. .++|+++|+||+|+.+... ..... ...+++++||++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~~~-~~~~~~~~SA~~ 149 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEV-NGHALIRLSART 149 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEE-TTEEEEECCTTT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhhhc-cCCceEEEeCCC
Confidence 8999999999998765555555555544 2689999999999853211 01111 246899999999
Q ss_pred CCChhhHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTK 277 (673)
Q Consensus 263 g~gv~~l~~~i~~~~ 277 (673)
|.|++++++++.+..
T Consensus 150 g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSM 164 (172)
T ss_dssp CTTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
No 138
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=1.1e-18 Score=168.54 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=116.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch------hhhhhcc--c
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS------NMRSRGA--H 185 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~------~~~~~~~--~ 185 (673)
+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.+ ++..+.+|||||++.|. .++...+ .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4578999999999999999999998777777788888887777777 67899999999999885 2333333 3
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
.+|++++|+|+++ ......++..+...+.|+++++||+|+.... .....+..... ..+++++||+++
T Consensus 85 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 85 KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL---------GVKVVPLSAAKK 153 (188)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBGGGT
T ss_pred CCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh---------CCCeEEEEecCC
Confidence 5899999999986 3444556666777889999999999984311 01111222221 247999999999
Q ss_pred CChhhHHHHHHHHHH
Q psy4665 264 TNVDNLTEAIERTKN 278 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~ 278 (673)
.|++++++++.+...
T Consensus 154 ~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 154 MGIEELKKAISIAVK 168 (188)
T ss_dssp BSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999977653
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=6.5e-19 Score=169.94 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=112.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|.+..+.....+++..... ..+... ....+.||||||++.|..++...++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34578999999999999999999998776555554443332 234442 2347899999999999999888899999999
Q ss_pred EEEECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCc
Q psy4665 192 LVVAADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGD 252 (673)
Q Consensus 192 lVvda~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~ 252 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+. +.++..+.....+ .
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~ 155 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------A 155 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------C
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC--------C
Confidence 99999985544332 23334443 37899999999999642 1122222222221 2
Q ss_pred eeEEEeecc-CCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISAL-TGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~-~g~gv~~l~~~i~~~~ 277 (673)
.+++++||+ ++.|++++++.+.+..
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 589999999 6899999999987653
No 140
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=169.07 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=112.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchh-hhhhccccCCe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSN-MRSRGAHCTDI 189 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~-~~~~~~~~aD~ 189 (673)
...++|+++|.+|+|||||+++|.+........++++.+.....+.+ ++. .+.+|||||++.|.. ++..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45579999999999999999999865544444556666655555666 443 677899999998875 66667889999
Q ss_pred EEEEEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 190 VVLVVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++|+|+++...... ..++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~ 170 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSAA 170 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEEEBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh---------CCEEEEEcCC
Confidence 999999998544332 233344433 37899999999999643 233333333222 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~ 277 (673)
+|.|++++++++.+..
T Consensus 171 ~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997754
No 141
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=1.7e-18 Score=167.77 Aligned_cols=157 Identities=19% Similarity=0.300 Sum_probs=115.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCC----------CCcchhhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPG----------HAAFSNMRS 181 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG----------~~~f~~~~~ 181 (673)
...++|+++|++|+|||||+++|++.... ....+++|....... . +.++.+||||| ++.|..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V--NSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E--TTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E--CCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999988732 233455555543322 2 34688999999 445655555
Q ss_pred hccc---cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 182 RGAH---CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 182 ~~~~---~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
..++ .+|++++|+|++++........+..+...++|+++|+||+|+.+.. .....+.+.... . ..+.+++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 172 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF---S-KYGEYTIIP 172 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH---H-SSCCSCEEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH---h-hcCCCceEE
Confidence 4444 4599999999999888888888888888899999999999997543 333333333221 1 112468999
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||++|.|++++++++.+..
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999997754
No 142
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=167.56 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=108.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|.+|+|||||+++|++..+.....+++...+ ...+... ....+.||||||++.|..+ ...++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4557999999999999999999999886655555444333 2233442 2346889999999998875 55888999999
Q ss_pred EEEECCCCChHhhH-HHHHHHHH------cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeec-
Q psy4665 192 LVVAADDGVMEQTV-ESIRMARE------AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISA- 260 (673)
Q Consensus 192 lVvda~~g~~~q~~-~~l~~~~~------~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA- 260 (673)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+. ..++..+..... .++++++||
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~ 167 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF---------GCLFFEVSAC 167 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCEEEECCSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc---------CCcEEEEeec
Confidence 99999985443332 23333332 48999999999999542 334444444333 257999999
Q ss_pred cCCCChhhHHHHHHHHH
Q psy4665 261 LTGTNVDNLTEAIERTK 277 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~~ 277 (673)
++|.|++++++++.+..
T Consensus 168 ~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SCSHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHH
Confidence 89999999999987654
No 143
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.7e-18 Score=166.36 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=111.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+... ....+.||||||++. ...+...++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3567999999999999999999999887655555544333 2334442 234689999999988 666777889999999
Q ss_pred EEEECCCCChHhh-HHHHHHHH----HcCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMAR----EAKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~~----~~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+|+|+++...... ..++..+. ..++|+++|+||+|+... ..++..+..... .++++++||++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~g 174 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL---------ACAFYECSACTG 174 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TSEEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh---------CCeEEEECCCcC
Confidence 9999998443322 22233332 258899999999999642 233333333332 358999999999
Q ss_pred C-ChhhHHHHHHHHHH
Q psy4665 264 T-NVDNLTEAIERTKN 278 (673)
Q Consensus 264 ~-gv~~l~~~i~~~~~ 278 (673)
. |++++++++.+...
T Consensus 175 ~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 175 EGNITEIFYELCREVR 190 (196)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9 99999999977653
No 144
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=2.3e-19 Score=195.02 Aligned_cols=156 Identities=21% Similarity=0.323 Sum_probs=118.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-------hhhcc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM-------RSRGA 184 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~-------~~~~~ 184 (673)
...++|+++|++|+|||||+++|++..+ .....+++|.+.....+.+.+..+++||||||+++|..+ ....+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3567999999999999999999998876 356678889888888888855559999999999988654 23467
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
..+|++++|+|+ +...++.+++..+...++|+++|+||+|+......+..+.+.+ .+ .++++++||++|.
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~------~~--g~~v~~vSAktg~ 181 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES------RY--EAKVLLVSALQKK 181 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC------CT--TCCCCCCSSCCTT
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH------Hc--CCCEEEEECCCCC
Confidence 889999999999 6778889999999999999999999999987654422222211 11 3589999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 182 gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 182 GFDDIGKTISEILP 195 (423)
T ss_dssp STTTHHHHHHHHSC
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999987653
No 145
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=183.18 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=112.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
..+.++|+|+|++|+|||||+++|++..+.... + |.......+.. .+..++||||||++.|..++..++..+|++|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-p--T~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-P--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-E--ETTEEEEEEEE-TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-c--ccceEEEEEec-CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 345679999999999999999999988764332 2 55555556666 6789999999999999999998999999999
Q ss_pred EEEECCCCChHhh-HHHHHHH-HH---cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 192 LVVAADDGVMEQT-VESIRMA-RE---AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 192 lVvda~~g~~~q~-~~~l~~~-~~---~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+|+|+++...... ...+..+ .. .++|+++|+||+|+.+. +.+++...+..... ....++++++||++|.|
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC----CSSCEEEEECBTTTTBT
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh----hcCCCEEEEEECCCCcC
Confidence 9999987544332 2333333 22 37899999999999764 33333333321111 11357899999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 314 i~el~~~l~~~l 325 (329)
T 3o47_A 314 LYEGLDWLSNQL 325 (329)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 146
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=9e-19 Score=180.08 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch------hhhhhccc--c
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS------NMRSRGAH--C 186 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~------~~~~~~~~--~ 186 (673)
.++|+++|++|+|||||+|+|++........+|+|.+.....+.. +..+.+|||||++.|. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 468999999999999999999998777777788888765555433 6689999999999886 23333443 6
Q ss_pred CCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 187 TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 187 aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
+|++++|+|+++. .....++.++...++|+++++||+|+.... ........... .++++++||++|.
T Consensus 81 ~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---------g~~vi~~SA~~g~ 149 (272)
T 3b1v_A 81 ADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---------GVPVVATSALKQT 149 (272)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---------TSCEEECBTTTTB
T ss_pred CCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---------CCCEEEEEccCCC
Confidence 9999999999872 344555666777899999999999984211 01111111111 3579999999999
Q ss_pred ChhhHHHHHHHH
Q psy4665 265 NVDNLTEAIERT 276 (673)
Q Consensus 265 gv~~l~~~i~~~ 276 (673)
|++++++++.+.
T Consensus 150 gi~el~~~i~~~ 161 (272)
T 3b1v_A 150 GVDQVVKKAAHT 161 (272)
T ss_dssp SHHHHHHHHHHS
T ss_pred CHHHHHHHHHHH
Confidence 999999998654
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.77 E-value=3.8e-18 Score=164.90 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=110.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
..+..+|+++|.+|+|||||+++|++..+.....+. .......+.+ ++ ..+.||||||++.|. .++.+|+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT--CEEEEEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC--cceEEEEEEE-CCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 345679999999999999999999998876554443 2222344555 44 356789999999887 5567999
Q ss_pred EEEEEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCC-----CcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 190 VVLVVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPA-----ADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 190 ~vlVvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
+++|+|+++....+. ..++..+.. .++|+++++||+|+.. ...++..+.....+ ..+++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~e~S 160 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------RCTYYETC 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--------TCEEEEEB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--------CCeEEEec
Confidence 999999998665554 344455544 3689999999999842 12334444433322 26899999
Q ss_pred ccCCCChhhHHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~ 278 (673)
|++|.|++++++++.+...
T Consensus 161 a~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999977653
No 148
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.77 E-value=1.5e-18 Score=170.90 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC-CeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS-GEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~-~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
....+|+++|++|+|||||+++|.+..+...+.+++..... ..+.+.. ...+.||||||++.|..++...++.+|+++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 34579999999999999999999998876555555444432 3344422 357899999999999999888899999999
Q ss_pred EEEECCCCChHhhH--HHHHHHHH--cCCCEEEEEecCCCCCC---------------cHHHHHHHHHHcCccccccCCc
Q psy4665 192 LVVAADDGVMEQTV--ESIRMARE--AKVPIIVAINKIDKPAA---------------DIERTKNMLLAQGITVEDLGGD 252 (673)
Q Consensus 192 lVvda~~g~~~q~~--~~l~~~~~--~~iP~IvviNK~Dl~~~---------------~~~~~~~~l~~~~~~~~~~~~~ 252 (673)
+|+|+++....... .++..+.. .++|+++|+||+|+... +.++..+.....+ .
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~ 176 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--------A 176 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--------C
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC--------C
Confidence 99999985443332 23344443 37899999999999642 1122222222211 2
Q ss_pred eeEEEeecc-CCCChhhHHHHHHHHH
Q psy4665 253 IQAVPISAL-TGTNVDNLTEAIERTK 277 (673)
Q Consensus 253 ~~~v~iSA~-~g~gv~~l~~~i~~~~ 277 (673)
.+++++||+ ++.|++++++.+.+..
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 579999999 6899999999987653
No 149
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=1e-18 Score=192.95 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=98.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh--------hcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS--------RGA 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~--------~~~ 184 (673)
...+|+++|++|+|||||+|+|++.. ......+++|.+.....+.+ ++..++||||||+.++...+. .++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 35679999999999999999999875 44667789999988788887 788999999999987764432 367
Q ss_pred ccCCeEEEEEECCCCChH----hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeec
Q psy4665 185 HCTDIVVLVVAADDGVME----QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~----q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA 260 (673)
..+|++++|+|++++... ...+++..+. ++|+++|+||+|+........ +.+.+.+ ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~~--------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADGT--------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHHH--------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhcC--------CCceEEEEE
Confidence 899999999999998776 3444444333 789999999999976544322 2232221 157899999
Q ss_pred cCCCChhhHHHHHHHHHH
Q psy4665 261 LTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~~~ 278 (673)
++|.|++++++++.+...
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987664
No 150
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=2.3e-18 Score=167.97 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=104.9
Q ss_pred cccCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEe--cCCeEEEEEeCCCCCcchhhh---hhcc
Q psy4665 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTL--KSGEQVTFLDTPGHAAFSNMR---SRGA 184 (673)
Q Consensus 110 ~~~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~--~~~~~i~liDTpG~~~f~~~~---~~~~ 184 (673)
....+.++|+++|.+|+|||||++++.+.... ....+.+.........+ .....+.||||||++.|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 33456789999999999999999988775322 22222222222222222 244689999999999998777 6788
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHH--HHHHHHHHcCccccc-c--CCcee
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMARE-----AKVPIIVAINKIDKPAADIE--RTKNMLLAQGITVED-L--GGDIQ 254 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~--~~~~~l~~~~~~~~~-~--~~~~~ 254 (673)
+.+|++++|+|+++........+...+.. .++|+++|+||+|+.+.+.. ............+.. . ...++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 99999999999999733332333233322 37899999999998753211 001000000000111 0 22578
Q ss_pred EEEeeccCCCChhhHHHHHHHH
Q psy4665 255 AVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 255 ~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
++++||++ .|++++++.+.+.
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHHH
Confidence 99999999 9999999988653
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=6.4e-20 Score=179.47 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=110.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIV 190 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~ 190 (673)
...++|+++|++|+|||||+++|++..+.....++++.+.....+.+ ++ ..+.||||||++.|..++...++.+|++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 34679999999999999999999998877776777777777777776 44 4789999999999999988899999999
Q ss_pred EEEEECCCCChHhhH-HHHHHHHHc---CCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 191 VLVVAADDGVMEQTV-ESIRMAREA---KVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 191 vlVvda~~g~~~q~~-~~l~~~~~~---~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
++|+|+++....+.. .++..+... ++|+++|+||+|+.+.. ........... .++++++||++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~vSA~~g 180 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKNA 180 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT---------TCCBCCCCC---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc---------CCeEEEEECCCC
Confidence 999999986654443 333444433 78999999999996432 11122222221 357899999999
Q ss_pred CChhhHHHHHHHH
Q psy4665 264 TNVDNLTEAIERT 276 (673)
Q Consensus 264 ~gv~~l~~~i~~~ 276 (673)
.|++++++++.+.
T Consensus 181 ~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 181 TNVEQSFMTMAAE 193 (199)
T ss_dssp HHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988653
No 152
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=6e-18 Score=161.76 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC--eEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+..+|+++|++|+|||||+++|.+..+.. ..+++... ....+.. ++ ..+.+|||||++.+ .+++.+|+++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~i 77 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLV-DGQTHLVLIREEAGAPDA-----KFSGWADAVI 77 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEE-TTEEEEEEEEECSSSCCH-----HHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEE-CCEEEEEEEEECCCCchh-----HHHHhCCEEE
Confidence 45789999999999999999999987764 33433322 2344455 33 46889999999873 3556799999
Q ss_pred EEEECCCCChHhhHHH----HHHHHH---cCCCEEEEEecCCCCC-----CcHHHHHHHHHHcCccccccCCceeEEEee
Q psy4665 192 LVVAADDGVMEQTVES----IRMARE---AKVPIIVAINKIDKPA-----ADIERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 192 lVvda~~g~~~q~~~~----l~~~~~---~~iP~IvviNK~Dl~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
+|+|+++....+.... +..+.. .++|+++|+||+|+.+ ...++..+...... ..+++++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~S 149 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK--------RCSYYETX 149 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--------SEEEEEEB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--------CCeEEEEe
Confidence 9999998655444433 222222 3789999999999842 22333333333221 36899999
Q ss_pred ccCCCChhhHHHHHHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~~ 279 (673)
|++|.|++++++++.+....
T Consensus 150 a~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 150 ATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 99999999999999876543
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.77 E-value=1.9e-18 Score=166.80 Aligned_cols=156 Identities=26% Similarity=0.357 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCC-----------CCcchhhhhhc-
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG-----------HAAFSNMRSRG- 183 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG-----------~~~f~~~~~~~- 183 (673)
++|+++|++|+|||||+++|.+..+.....+++|...... .+ . .+.+||||| ++.|..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988777778877665433 33 2 689999999 45555554433
Q ss_pred ---cccCCeEEEEEECCCCC-----------hHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcccccc
Q psy4665 184 ---AHCTDIVVLVVAADDGV-----------MEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDL 249 (673)
Q Consensus 184 ---~~~aD~~vlVvda~~g~-----------~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~ 249 (673)
+..+++++.|+|+++.. ..++.+.+..+...++|+++|+||+|+.....+...+.....+.....+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhcc
Confidence 44566777788876421 1122334555666789999999999998654333333334444322111
Q ss_pred CCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 250 GGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 250 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
..+++++||++|.|++++++++.+...
T Consensus 157 --~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 157 --DKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp --HHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 246899999999999999999987654
No 154
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.77 E-value=5.5e-19 Score=175.77 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccc--ccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~--~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
.+..+|+++|++|+|||||+++|+...+.... ..++|.... .+... .+..+.||||||++.|..++...++.+|+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEE--EEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE--EEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45578999999999999999997766544332 334444433 33332 34578999999999999988889999999
Q ss_pred EEEEEECCCCChHhhHHH-HHHHHH--cCCCEEEEEecCCCCCCcHH-HHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 190 VVLVVAADDGVMEQTVES-IRMARE--AKVPIIVAINKIDKPAADIE-RTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~~~-l~~~~~--~~iP~IvviNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
+++|+|++++...+.... +..+.. .++|+++|+||+|+.+.... +........ .++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK---------NLQYYDISAKSNYN 161 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHH---------TCEEEECBGGGTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 999999998655544333 333333 28899999999999653321 111111111 35899999999999
Q ss_pred hhhHHHHHHHHH
Q psy4665 266 VDNLTEAIERTK 277 (673)
Q Consensus 266 v~~l~~~i~~~~ 277 (673)
++++++++.+..
T Consensus 162 i~~l~~~l~~~l 173 (221)
T 3gj0_A 162 FEKPFLWLARKL 173 (221)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 155
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=1.4e-18 Score=190.94 Aligned_cols=186 Identities=19% Similarity=0.273 Sum_probs=124.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCC--------cchhhhhhccc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA--------AFSNMRSRGAH 185 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~--------~f~~~~~~~~~ 185 (673)
.++|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+ ++..+.+|||||++ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 378999999999999999999987653 466788998887777766 67889999999986 56666667889
Q ss_pred cCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 186 CTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 186 ~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
.||++++|+|+.++......+.++.++..++|+++|+||+|+..... ....+..++ ..+++++||++|.|
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~---------~~~~~~~lg-~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NIYDFYSLG-FGEPYPISGTHGLG 151 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--------------CCCSSGGGS-SCCCEECBTTTTBT
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh---------hHHHHHHcC-CCCeEEEeCcCCCC
Confidence 99999999999999998888888888888999999999999864210 000111111 12689999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 266 VDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 266 v~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
++++++++.+.... ....++....+. +.+-...|.|-..|+..+..
T Consensus 152 v~~L~~~i~~~l~~----~~~~~~~~~~~k-i~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN----IPETKYNEEVIQ-FCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp HHHHHHHHHHTGGG----CCSSCCCTTCEE-EEEECSTTSSHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCc----cccccccccCcE-EEEEcCCCCCHHHHHHHHhC
Confidence 99999998765431 110001112222 23445678899999988753
No 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.75 E-value=3e-18 Score=175.13 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=115.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccc-eeeeEEEEEEEecCCeEEEEEeCCCCCcchhh-----------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGG-ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNM----------- 179 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g-~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~----------- 179 (673)
.+.++|+|+|++|+|||||+++|++.. +.....++ +|.+.....+.+ ++.++.||||||+.++...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999877 33333344 677776666766 6889999999998776422
Q ss_pred hhhccccCCeEEEEEECCCCChHhhHHHHHHHHHc-----CCCEEEEEe-cCCCCCCcHHHHH---------HHHHHcCc
Q psy4665 180 RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA-----KVPIIVAIN-KIDKPAADIERTK---------NMLLAQGI 244 (673)
Q Consensus 180 ~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~-----~iP~IvviN-K~Dl~~~~~~~~~---------~~l~~~~~ 244 (673)
...+++.+|++++|+|++. ...+....+..+... +.|.++++| |+|+.+.+..... +.+...+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCC
Confidence 1236688999999999986 666666676766654 678888887 9999865443321 12222221
Q ss_pred cccccCCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 245 TVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 245 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
.... ...+++||++|.|++++++++.+....
T Consensus 178 ~~~~----~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 178 RICA----FNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CEEE----CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEE----ecCcccccccHHHHHHHHHHHHHHHHh
Confidence 1100 111789999999999999999887654
No 157
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=2.6e-18 Score=189.86 Aligned_cols=152 Identities=28% Similarity=0.380 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCC-cchh--------hhhhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA-AFSN--------MRSRG 183 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~-~f~~--------~~~~~ 183 (673)
+.++|+++|++|+|||||+|+|++... ...+.+++|.++....+.+ ++..+.||||||+. .+.. ....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 347899999999999999999998863 4677889999988888888 68899999999998 6542 22346
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+..+|++++|+|++++...+..+.++.+ .++|+++|+||+|+... +.++..+.+ +...+++++||++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~~----------~~~~~~i~iSAkt 388 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKL----------GTDRHMVKISALK 388 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHH----------TCSTTEEEEEGGG
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHHh----------cCCCcEEEEECCC
Confidence 7899999999999998777777766655 47899999999999753 222222211 1135789999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
|.|++++++++.+...
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988644
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=2.8e-18 Score=188.85 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh--------hcc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS--------RGA 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~--------~~~ 184 (673)
...+|+++|++|+|||||+|+|++.... ....+++|.+.....+.+ ++..++||||||+.++..... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC--------------------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3567999999999999999999987543 566788888877666777 788999999999877654332 356
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~ 264 (673)
..+|++++|+|++++...+..+++..+. +.|+++|+||+|+.+..... ....+....+++++||++|.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~~~~~~i~iSAktg~ 369 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPENITQIVHTAAAQKQ 369 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCTTCCCEEEEBTTTTB
T ss_pred hcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhccCCcEEEEECCCCC
Confidence 8899999999999988887777777664 47999999999997543211 11222235689999999999
Q ss_pred ChhhHHHHHHHHHH
Q psy4665 265 NVDNLTEAIERTKN 278 (673)
Q Consensus 265 gv~~l~~~i~~~~~ 278 (673)
|++++++++.+...
T Consensus 370 Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 370 GIDSLETAILEIVQ 383 (462)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987654
No 159
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=2e-17 Score=184.99 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=118.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.+..+|+++|.+|+|||||+++|++..+.. . ..|.+.....+.+ ++..+.||||||++.|..++..++..+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~--~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-T--IPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-C--CCCSSEEEEEEES-SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-c--CCccceeEEEEEe-CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 345789999999999999999999887442 2 2355566666666 67899999999999999999999999999999
Q ss_pred EEECCCCChHhh-HHHHHHHHH----cCCCEEEEEecCCCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCCh
Q psy4665 193 VVAADDGVMEQT-VESIRMARE----AKVPIIVAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNV 266 (673)
Q Consensus 193 Vvda~~g~~~q~-~~~l~~~~~----~~iP~IvviNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv 266 (673)
|+|+++....+. ...+..+.. .++|+|+|+||+|+.+. +..++...+ +.... ....++++++||++|.|+
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL---GLTRI-RDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHT---TCTTC-CSSCEEEEECBTTTTBTH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHh---chhhh-hcCCeEEEEEECCCCCCH
Confidence 999998654433 233333332 47899999999999764 233332222 21111 113468999999999999
Q ss_pred hhHHHHHHHHHHHH
Q psy4665 267 DNLTEAIERTKNML 280 (673)
Q Consensus 267 ~~l~~~i~~~~~~~ 280 (673)
++++++|.+.....
T Consensus 472 ~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 472 YEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998765444
No 160
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.73 E-value=2.3e-17 Score=172.90 Aligned_cols=157 Identities=14% Similarity=0.205 Sum_probs=113.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc-----hhhhhhccccCC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF-----SNMRSRGAHCTD 188 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f-----~~~~~~~~~~aD 188 (673)
..+|+++|.+|+|||||+++|++.. ......++.|.+.....+.+.++..+.+|||||++.| ...+...++.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 4689999999999999999998874 3334467788887777777656789999999999998 566667778999
Q ss_pred eEEEEEECCCCChHhhHHHH----HHHHH--cCCCEEEEEecCCCCCCcHHH-----HHHHHHHcCccccccCC-ceeEE
Q psy4665 189 IVVLVVAADDGVMEQTVESI----RMARE--AKVPIIVAINKIDKPAADIER-----TKNMLLAQGITVEDLGG-DIQAV 256 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l----~~~~~--~~iP~IvviNK~Dl~~~~~~~-----~~~~l~~~~~~~~~~~~-~~~~v 256 (673)
++++|+|+++....+....| ..+.. .++|+++++||+|+.+.+... ..+.+.+. ...++. .++++
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~---~~~~g~~~~~~~ 159 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET---SSEFGFPNLIGF 159 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH---HHTTTCCSCEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHH---HHHcCCCCeEEE
Confidence 99999999997665554332 23322 279999999999997532221 11111111 111221 37899
Q ss_pred EeeccCCCChhhHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIER 275 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~ 275 (673)
++||++ .++.+++..+..
T Consensus 160 ~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHH
T ss_pred EeeecC-ChHHHHHHHHHH
Confidence 999999 788877776644
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=7.1e-17 Score=159.70 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCe--EEEEEeCCCCCc-chhhhhhccccCCe
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAA-FSNMRSRGAHCTDI 189 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~-f~~~~~~~~~~aD~ 189 (673)
...+|+++|.+|+|||||+++|.+.... ....++++.+.....+.+ ++. .+.+|||+|.+. +..+...+++.+|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4578999999999999999999865431 222334444544455555 444 567899999887 55555666788999
Q ss_pred EEEEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 190 VVLVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++|+|.++....+.. .++..+.. .++|+++|+||+|+... ..++........ .++++++||+
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~---------~~~~~e~SAk 185 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF---------DCKFIETSAA 185 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999999985443333 33333432 37899999999999642 222222222221 3579999999
Q ss_pred CCCChhhHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKN 278 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~ 278 (673)
+|.|++++|+++.+...
T Consensus 186 ~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 186 VQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.57 E-value=2.9e-19 Score=175.34 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=109.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec-CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~-~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
.+..+|+++|++|+|||||+++|++..+.....+.+. +.....+... ....+.||||||++.|...+...++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4678999999999999999999998776544433332 2222233331 2345679999999999999888899999999
Q ss_pred EEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcHH--HHHH----HH-HHcCccccccCCceeEEEeec
Q psy4665 192 LVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADIE--RTKN----ML-LAQGITVEDLGGDIQAVPISA 260 (673)
Q Consensus 192 lVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~~--~~~~----~l-~~~~~~~~~~~~~~~~v~iSA 260 (673)
+|+|++++...+.. .++..+... ++|+++|+||+|+.+.... ...+ .. ......+....+..+++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 99999986544443 333444443 7899999999999643210 0000 00 000000111111237899999
Q ss_pred cCCCChhhHHHHHHHH
Q psy4665 261 LTGTNVDNLTEAIERT 276 (673)
Q Consensus 261 ~~g~gv~~l~~~i~~~ 276 (673)
++|.|++++++++.+.
T Consensus 187 ~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRA 202 (204)
Confidence 9999999999988653
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=4.3e-18 Score=188.22 Aligned_cols=187 Identities=19% Similarity=0.304 Sum_probs=126.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCC--------CCcchhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--------HAAFSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG--------~~~f~~~~~~~ 183 (673)
.+.++|+|+|++|+|||||+|+|++..+. ....+|+|.+.....+.+ .+..+++||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 35689999999999999999999987754 556788888877776666 678999999999 55666677778
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCC
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g 263 (673)
+..+|++++|+|+.++......+.++.+...++|+++|+||+|+.... .... ....++ ....+++||++|
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~~----e~~~lg-~~~~~~iSA~~g 169 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANIY----DFYSLG-FGEPYPISGTHG 169 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------C----CSGGGS-SSSEEECCTTTC
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhHH----HHHHcC-CCceEEeecccc
Confidence 899999999999999999999999999988999999999999986321 0000 011111 124679999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 264 ~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
.|+.++++++.+..... . ..++ .....-+.+-...|.|-..|+..+.
T Consensus 170 ~gv~~L~~~i~~~l~~~---~-~~~~-~~~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNI---P-ETKY-NEEVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TTHHHHHHHHHTTGGGS---C-SSCC-CTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred cchHHHHHHHHhhcccc---c-cccc-ccccceeEEecCCCCCHHHHHHHHh
Confidence 99999999986643211 0 0111 1112222334467788888888875
No 164
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=1.3e-17 Score=169.22 Aligned_cols=165 Identities=18% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccc--cceeeeEEEEEEEecCCeEEEEEeCCCC--------Ccchhhhhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--GGITQHIGAFVVTLKSGEQVTFLDTPGH--------AAFSNMRSR 182 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~--~g~T~~~~~~~v~~~~~~~i~liDTpG~--------~~f~~~~~~ 182 (673)
....+|+++|++|+|||||+|+|++..+..... .++|.......+.+ ++..++||||||+ +.|.....+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456799999999999999999999987654433 24677776666766 6889999999997 445444444
Q ss_pred cc----ccCCeEEEEEECCCCChHhhHHHHHHHHHc------CCCEEEEEecCCCCCCcHHHHHHHH--HHcCccccccC
Q psy4665 183 GA----HCTDIVVLVVAADDGVMEQTVESIRMAREA------KVPIIVAINKIDKPAADIERTKNML--LAQGITVEDLG 250 (673)
Q Consensus 183 ~~----~~aD~~vlVvda~~g~~~q~~~~l~~~~~~------~iP~IvviNK~Dl~~~~~~~~~~~l--~~~~~~~~~~~ 250 (673)
++ ..+|++++|+|++. ........++.+... +.|++++.||+|+.+.+.++..... .......+.++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 44 89999999999985 666666666666653 7899999999999876554433210 00011122333
Q ss_pred CceeEEEeecc---CCCChhhHHHHHHHHHHH
Q psy4665 251 GDIQAVPISAL---TGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 251 ~~~~~v~iSA~---~g~gv~~l~~~i~~~~~~ 279 (673)
+.+.++..++. .+.++++|++.+.+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 33333333332 257888888888776543
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.71 E-value=7.1e-17 Score=170.31 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=112.8
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
.....+|+++|.+|+|||||+++|.+..+.....+.+ .+.....+.. ++. .+.||||||++.|...+..++..+|+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCS-EEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcc-cceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 3456899999999999999999999887755544433 3333344444 444 45599999999999999889999999
Q ss_pred EEEEEECCCCChHhhH--HHHHHHHHc--CCCEEEEEecCCCCCCcH---------------HHHHHHHHHcCccccccC
Q psy4665 190 VVLVVAADDGVMEQTV--ESIRMAREA--KVPIIVAINKIDKPAADI---------------ERTKNMLLAQGITVEDLG 250 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~--~~l~~~~~~--~iP~IvviNK~Dl~~~~~---------------~~~~~~l~~~~~~~~~~~ 250 (673)
+++|+|++++...+.. .++..+... ++|+++|+||+|+..... ++..+.....
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 301 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-------- 301 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc--------
Confidence 9999999986554443 233444443 899999999999964321 1111111111
Q ss_pred CceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 251 GDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 251 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
+..+++++||++|.|++++++++.+..
T Consensus 302 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 302 GAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 124899999999999999999987654
No 166
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.70 E-value=1.9e-16 Score=154.16 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCc-chhhhhhccccCCe
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAA-FSNMRSRGAHCTDI 189 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~-f~~~~~~~~~~aD~ 189 (673)
..++|+++|.+|+|||||+++|.+... .....++++.+.....+.+ ++. .+.+|||+|.+. +..++..+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 347899999999999999999986432 1222334445554455556 444 567899999876 44455556788999
Q ss_pred EEEEEECCCCChHhhH-HHHHHHHH----cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeecc
Q psy4665 190 VVLVVAADDGVMEQTV-ESIRMARE----AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g~~~q~~-~~l~~~~~----~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~ 261 (673)
+++|+|.++....+.. .++..+.. .++|+++|+||+|+... ..++........ .++++++||+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~---------~~~~~e~SA~ 154 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF---------DXKFIETSAA 154 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHh---------CCceEEeccc
Confidence 9999999985443333 23333332 37899999999998532 122211111111 3579999999
Q ss_pred CCCChhhHHHHHHHHHH
Q psy4665 262 TGTNVDNLTEAIERTKN 278 (673)
Q Consensus 262 ~g~gv~~l~~~i~~~~~ 278 (673)
+|.|++++++++.+...
T Consensus 155 ~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 155 VQHNVKELFEGIVRQVR 171 (192)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 167
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.70 E-value=1.3e-17 Score=176.49 Aligned_cols=156 Identities=22% Similarity=0.242 Sum_probs=113.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----chhhh---hhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----FSNMR---SRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----f~~~~---~~~~~~a 187 (673)
.+.|+++|++|||||||+++|++..+.....+++|.+.....+.++++..+.||||||+.. +..+. .+.+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999999988777777888888887778875558999999999632 32232 2345569
Q ss_pred CeEEEEEECCC---CChH-hhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 188 DIVVLVVAADD---GVME-QTVESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 188 D~~vlVvda~~---g~~~-q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
|++++|+|+++ .... +...++..+.. .++|+++|+||+|+.... +.. +.+.+. +....+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-e~~-~~l~~~------l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-ENL-EAFKEK------LTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-HHH-HHHHHH------CCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-HHH-HHHHHH------hhcCCCEEEE
Confidence 99999999986 3322 23334445554 378999999999997532 222 222221 1112578999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~~ 278 (673)
||+++.|++++++++.+...
T Consensus 310 SA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHHHh
Confidence 99999999999999987653
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.70 E-value=3.8e-16 Score=167.10 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=114.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh---------hhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN---------MRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~---------~~~~~ 183 (673)
.+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.. .+..+.+|||||+..+.. .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 46789999999999999999999998866666778888777666666 578899999999865421 11123
Q ss_pred cccCCeEEEEEECCCCC--h-HhhHHHHHHHHH-c-CCCEEEEEecCCCCCCc-HHHHHHHHHHcCccccccCCceeEEE
Q psy4665 184 AHCTDIVVLVVAADDGV--M-EQTVESIRMARE-A-KVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~--~-~q~~~~l~~~~~-~-~iP~IvviNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
...+|.+++|+|++++. . ....+++..+.. . +.|+++|+||+|+.... .++..+.+... ..++++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---------~~~~~~ 314 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEK---------GLNPIK 314 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHT---------TCCCEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhc---------CCCeEE
Confidence 35699999999988743 2 223344444443 2 89999999999997532 12222222211 357899
Q ss_pred eeccCCCChhhHHHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
+||++|+|++++++++.+....
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999877644
No 169
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.69 E-value=6.7e-17 Score=155.93 Aligned_cols=159 Identities=15% Similarity=0.151 Sum_probs=101.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC--ccccccccceeeeEEEEEEEe----cCCeEEEEEeCCCCCcchhhhhhccccCCe
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT--SVVKSEFGGITQHIGAFVVTL----KSGEQVTFLDTPGHAAFSNMRSRGAHCTDI 189 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~--~~~~~~~~g~T~~~~~~~v~~----~~~~~i~liDTpG~~~f~~~~~~~~~~aD~ 189 (673)
.+|+++|.+|+|||||+++|.+. .+.....++++.++....+.. .....+.+|||||++.|..++..+++.+|+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRAL 82 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcE
Confidence 68999999999999999999985 233333444444444333322 134578999999999999888888889999
Q ss_pred EEEEEECCCCC-hHh-hHHHHHHHHH--cCCCEEEEEecCCCCCCcHHH-H-HHHHHHcCccccccCC--ceeEEEeecc
Q psy4665 190 VVLVVAADDGV-MEQ-TVESIRMARE--AKVPIIVAINKIDKPAADIER-T-KNMLLAQGITVEDLGG--DIQAVPISAL 261 (673)
Q Consensus 190 ~vlVvda~~g~-~~q-~~~~l~~~~~--~~iP~IvviNK~Dl~~~~~~~-~-~~~l~~~~~~~~~~~~--~~~~v~iSA~ 261 (673)
+++|+|.+++. ... ...++..+.. .+.|+++|+||+|+.+..... . ........ ..++. ..+++++||+
T Consensus 83 ~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 83 YLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELL---NKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT---TCTTSCEEEEEEECCTT
T ss_pred EEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHH---HhcCCcchhheEEEecc
Confidence 99999998863 222 2333343333 378999999999997532111 1 11111111 11111 1248999999
Q ss_pred CCC-ChhhHHHHHHHHH
Q psy4665 262 TGT-NVDNLTEAIERTK 277 (673)
Q Consensus 262 ~g~-gv~~l~~~i~~~~ 277 (673)
++. +++++++.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 160 EESDALAKLRKTIINES 176 (184)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHH
Confidence 996 9999998886654
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=1.7e-16 Score=165.28 Aligned_cols=167 Identities=15% Similarity=0.178 Sum_probs=111.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc------cccccc----------------------eeee-------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV------KSEFGG----------------------ITQH------------- 151 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~------~~~~~g----------------------~T~~------------- 151 (673)
...++|+++|.+|+|||||+|+|++..+. ....++ +|.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999988753 122232 1111
Q ss_pred ----------EEEEEEEecCCeEEEEEeCCCCC-------------cchhhhhhccccCCeEE-EEEECCCCChHhhH-H
Q psy4665 152 ----------IGAFVVTLKSGEQVTFLDTPGHA-------------AFSNMRSRGAHCTDIVV-LVVAADDGVMEQTV-E 206 (673)
Q Consensus 152 ----------~~~~~v~~~~~~~i~liDTpG~~-------------~f~~~~~~~~~~aD~~v-lVvda~~g~~~q~~-~ 206 (673)
.....+..+++..++||||||+. .+..+...++..++.++ +|+|++++...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00111222234689999999964 34455666777888666 79999988776664 4
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHh
Q psy4665 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLA 282 (673)
Q Consensus 207 ~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 282 (673)
.++.+...+.|+++|+||+|+.+.... ..+.+......+ ..+..+++++||++|.|++++++++.+....+..
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~ 256 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 256 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCC--TTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCch-HHHHHhCCcCcC--CCCcEEEECCChhhccccccHHHHHHHHHHHHhc
Confidence 666666678999999999999653221 122222211111 0124678999999999999999999885554433
No 171
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=6.4e-17 Score=160.19 Aligned_cols=189 Identities=21% Similarity=0.214 Sum_probs=111.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCcccc---ccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhcccc--
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHC-- 186 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~---~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~-- 186 (673)
..+.++|+++|++|+|||||+++|.+..+.. ...++++.+. .+..+.+|||||++.|...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999877543 2223333222 35679999999999998888777766
Q ss_pred --CCeEEEEEECC-CC-ChHhhHHHHHHHHH-------cCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCcee
Q psy4665 187 --TDIVVLVVAAD-DG-VMEQTVESIRMARE-------AKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQ 254 (673)
Q Consensus 187 --aD~~vlVvda~-~g-~~~q~~~~l~~~~~-------~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 254 (673)
+|++++|+|++ +. ........+..+.. .++|+++|+||+|+..... ....+.+.+....+.. ....+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 159 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE-RRKKS 159 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH-HHhcc
Confidence 89999999998 32 22222233322221 4899999999999976532 3332222221111100 01246
Q ss_pred EEEeeccCCCCh--hhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 255 AVPISALTGTNV--DNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 255 ~v~iSA~~g~gv--~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
++++||++|.+- ..+...+.. ..++..+.+...+..+.+|+.++ ++.++++.+..
T Consensus 160 ~~~~Sa~~~~~~~~~~~~~~l~~------~~~f~~~~~~~~v~~~~~s~~~~-~i~~~~~~~~~ 216 (218)
T 1nrj_B 160 LNEVERKINEEDYAENTLDVLQS------TDGFKFANLEASVVAFEGSINKR-KISQWREWIDE 216 (218)
T ss_dssp HHC--------------CTTC----------CCCGGGSSSCEEEEECBTTTT-BCHHHHHHHHH
T ss_pred ccccccccccccchhhhcccccC------CCCccccccCCceEEEeccccCC-cHHHHHHHHHh
Confidence 889999988753 111111111 12344555666666777888877 58888887753
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=8.6e-16 Score=150.04 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCe--EEEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE--QVTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~--~i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
.++|+++|++|||||||+++|.+..+.....++++.+.....+.+ ++. .+.+|||||++.|...+...+..+|++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 478999999999999999999998876666666666666666666 454 56789999999998877777788999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|.++....+.. .++..+.. .+.|+++++||+|+.+. ............ .+.++++||+++.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~---------~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---------NLSFIETSALDSTN 154 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 9999885444332 33333332 46899999999999542 233333333322 35788999999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy4665 266 VDNLTEAIERTKNMLL 281 (673)
Q Consensus 266 v~~l~~~i~~~~~~~~ 281 (673)
++++++++.+......
T Consensus 155 i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 155 VEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765443
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.65 E-value=2e-16 Score=178.42 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=102.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEE------EEEec---CCeEEEEEeCCCCCcchhhhhhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF------VVTLK---SGEQVTFLDTPGHAAFSNMRSRG 183 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~------~v~~~---~~~~i~liDTpG~~~f~~~~~~~ 183 (673)
.+..+|+++|.+|||||||+++|++..+.....+++..++... .+... .+..+.+|||||++.|..+....
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3457899999999999999999999887655444444433322 11111 25689999999999999988888
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHc--CCCEEEEEecCCCCCCc---HHHHHHHHHHcCccccccCCceeEEEe
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREA--KVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPI 258 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~i 258 (673)
++.+|++++|+|+++. .....++..+... +.|+++|+||+|+.... .+...+..... ..+++++
T Consensus 119 l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~v 187 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI---------ENRFHRI 187 (535)
T ss_dssp HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG---------TTCEEEC
T ss_pred ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc---------CCceEEE
Confidence 8899999999999864 4445566666664 49999999999996532 22222222111 2469999
Q ss_pred eccCCCChhhHHHHHHHHHH
Q psy4665 259 SALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 259 SA~~g~gv~~l~~~i~~~~~ 278 (673)
||++|.|++++++++.+...
T Consensus 188 SA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CC-----CTTHHHHHHHHHT
T ss_pred ecCcccCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 174
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=160.54 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=98.4
Q ss_pred cCCCCEEEEEeCC---------CCChhHHHHHHhc---Cccccccccce-eeeEEEEEE--------------Ee-cCCe
Q psy4665 112 MKRPPVVTIMGHV---------DHGKTTLLDTLRN---TSVVKSEFGGI-TQHIGAFVV--------------TL-KSGE 163 (673)
Q Consensus 112 ~~~~~~V~ivG~~---------n~GKSTLl~~L~~---~~~~~~~~~g~-T~~~~~~~v--------------~~-~~~~ 163 (673)
..+..+|+++|.+ |+|||||+++|.+ ..+.....+++ +.++....+ .. ....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456899999999 9999999999998 44444443332 222111000 01 1234
Q ss_pred EEEEEe-----------------------CCCCCcchhhhhhccc---------------------cCCeEEEEEECCCC
Q psy4665 164 QVTFLD-----------------------TPGHAAFSNMRSRGAH---------------------CTDIVVLVVAADDG 199 (673)
Q Consensus 164 ~i~liD-----------------------TpG~~~f~~~~~~~~~---------------------~aD~~vlVvda~~g 199 (673)
.+.||| ++|++.|..++...+. .||++++|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 678888 5555555555554554 69999999999985
Q ss_pred --ChHhh-HHHHHHHH----HcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHH
Q psy4665 200 --VMEQT-VESIRMAR----EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 200 --~~~q~-~~~l~~~~----~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
...+. ..++..+. ..++|+++|+||+|+.... .+ +...... .. ...++++++||++|.|+++++++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v-~~~~~~~---~~-~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER--YI-RDAHTFA---LS-KKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH--HH-HHHHHHH---HT-SSSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH--HH-HHHHHHH---Hh-cCCCeEEEEECCCCCCHHHHHHH
Confidence 33322 23333332 3579999999999996421 11 1111110 00 01357999999999999999999
Q ss_pred HHHHH
Q psy4665 273 IERTK 277 (673)
Q Consensus 273 i~~~~ 277 (673)
+.+..
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=152.81 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=82.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccccc--ceeeeEEEEEEEecCCeEEEEEeCCCCCc-----------chhh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG--GITQHIGAFVVTLKSGEQVTFLDTPGHAA-----------FSNM 179 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~--g~T~~~~~~~v~~~~~~~i~liDTpG~~~-----------f~~~ 179 (673)
.+.++|+++|++|+|||||+|+|++..+.....+ ++|.+.....+.+ ++..++||||||+.+ +...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999887655554 6777777777777 678999999999643 3344
Q ss_pred hhhccccCCeEEEEEECCCCChHhhHHHHHHHH-----HcCCCEEEEEecCCCCC
Q psy4665 180 RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR-----EAKVPIIVAINKIDKPA 229 (673)
Q Consensus 180 ~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~-----~~~iP~IvviNK~Dl~~ 229 (673)
....+..+|++++|+|+++.. ......+..+. ....|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred HHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 445567789999999997533 33344443332 23569999999999864
No 176
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=7.5e-16 Score=158.67 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=90.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCcccccc--------ccceeeeEEEEEEEecCC--eEEEEEeCCCCCcc-------h
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSE--------FGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAF-------S 177 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~--------~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f-------~ 177 (673)
..+|+++|++|+|||||+|+|++....... .++++.+.....+.. ++ .++++|||||+.++ .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999887654433 233444444443433 33 38999999998433 2
Q ss_pred hhh-------hhcc-------------ccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHHH
Q psy4665 178 NMR-------SRGA-------------HCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IERT 235 (673)
Q Consensus 178 ~~~-------~~~~-------------~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~~ 235 (673)
.+. ..++ ..+|+++++++.+. +....+.+.++.+.. ++|+|+|+||+|+.... ....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 222 1111 23778888886654 788888888888877 89999999999986422 2222
Q ss_pred HHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 236 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
.+.+.+. +.. ..++++++||.+++|++++++++.+.
T Consensus 166 ~~~i~~~---l~~--~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 166 KKQIMKE---IQE--HKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHH---HHH--TTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHH---HHH--cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2222211 001 13568889999999999998887653
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.62 E-value=6.8e-15 Score=142.83 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeE--EEEEeCCCCCcchhhhhhccccCCeEEE
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ--VTFLDTPGHAAFSNMRSRGAHCTDIVVL 192 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~--i~liDTpG~~~f~~~~~~~~~~aD~~vl 192 (673)
..+|+++|++|||||||+++|.+..+.....++++.+.....+.+ ++.. +.+|||||++.|...+...+..++++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 478999999999999999999998877666677777776667777 5554 5579999999998888878888999999
Q ss_pred EEECCCCChHhhH-HHHHHHHH---cCCCEEEEEecCCCCCC---cHHHHHHHHHHcCccccccCCceeEEEeeccCCCC
Q psy4665 193 VVAADDGVMEQTV-ESIRMARE---AKVPIIVAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265 (673)
Q Consensus 193 Vvda~~g~~~q~~-~~l~~~~~---~~iP~IvviNK~Dl~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~g 265 (673)
|+|.++....+.. .++..+.. .+.|+++++||+|+.+. ..........+. .+.++++||+++.+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~---------~~~~ld~Sald~~~ 178 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---------GLSFIETSALDSTN 178 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 9999875433332 23333332 36799999999999642 223333333222 35788899999999
Q ss_pred hhhHHHHHHHH
Q psy4665 266 VDNLTEAIERT 276 (673)
Q Consensus 266 v~~l~~~i~~~ 276 (673)
++++++.+.+.
T Consensus 179 v~~l~~~l~~~ 189 (191)
T 1oix_A 179 VEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=3e-15 Score=157.05 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccc------cccc---eeee--------------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS------EFGG---ITQH-------------------------------- 151 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~------~~~g---~T~~-------------------------------- 151 (673)
...|.|+|+|++|+|||||+|+|++..+... ..++ ++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998775221 1121 1110
Q ss_pred ------------------EEEEEEEecCCeEEEEEeCCCCCc-------------chhhhhhccccCCeEEEEEEC-CCC
Q psy4665 152 ------------------IGAFVVTLKSGEQVTFLDTPGHAA-------------FSNMRSRGAHCTDIVVLVVAA-DDG 199 (673)
Q Consensus 152 ------------------~~~~~v~~~~~~~i~liDTpG~~~-------------f~~~~~~~~~~aD~~vlVvda-~~g 199 (673)
.....+..+++..++||||||+.. +......++..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 001112233456899999999854 445566778999999999997 445
Q ss_pred ChHhh-HHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcccccc-CCceeEEEeeccC---CCChhhHHHHHH
Q psy4665 200 VMEQT-VESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDL-GGDIQAVPISALT---GTNVDNLTEAIE 274 (673)
Q Consensus 200 ~~~q~-~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~-~~~~~~v~iSA~~---g~gv~~l~~~i~ 274 (673)
...+. ...++.+...+.|+++|+||+|+...... ..+.+.... ..+ .+..+++++||.+ +.|+.++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~~~~~~~~~---~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-AMEVLTGRV---IPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-CHHHHTTSS---SCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-HHHHHhCCC---ccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 54444 46777777788999999999999754321 222222111 111 1234455556666 778888877765
Q ss_pred HHH
Q psy4665 275 RTK 277 (673)
Q Consensus 275 ~~~ 277 (673)
+..
T Consensus 258 ~~~ 260 (315)
T 1jwy_B 258 LYF 260 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 179
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.59 E-value=4.9e-15 Score=154.33 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=101.7
Q ss_pred EEEEEeCCCCChhHHHHHHhcCccccc-cccceeeeEEEEEEEecCCeEEEEEeCCCCCcchh---hhhhccccCCeEEE
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSN---MRSRGAHCTDIVVL 192 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~~~~~~-~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~---~~~~~~~~aD~~vl 192 (673)
+|+++|..|+|||||++++.+...... ...+.|.......+ ....++++|||||+++|.. .+..+++.++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 488999999999999998876543221 11223333332333 2346899999999999964 45678899999999
Q ss_pred EEECCCCChHhhHHHH----HHHHH--cCCCEEEEEecCCCCCCcH-HHHHHHH-HHcCcccccc---CCceeEEEeecc
Q psy4665 193 VVAADDGVMEQTVESI----RMARE--AKVPIIVAINKIDKPAADI-ERTKNML-LAQGITVEDL---GGDIQAVPISAL 261 (673)
Q Consensus 193 Vvda~~g~~~q~~~~l----~~~~~--~~iP~IvviNK~Dl~~~~~-~~~~~~l-~~~~~~~~~~---~~~~~~v~iSA~ 261 (673)
|+|+++. .......| ..+.. .++|+++++||+|+...+. ....+.+ .+.+..+.+. +..++++++||+
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 9999987 44444433 22222 4789999999999976432 1111111 1111112221 135789999999
Q ss_pred CCCChhhHHHHHHH
Q psy4665 262 TGTNVDNLTEAIER 275 (673)
Q Consensus 262 ~g~gv~~l~~~i~~ 275 (673)
+ .++.+.|..+.+
T Consensus 158 d-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQ 170 (331)
T ss_dssp S-SHHHHHHHHHHT
T ss_pred C-CcHHHHHHHHHH
Confidence 8 588888887764
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=1.6e-14 Score=141.77 Aligned_cols=157 Identities=22% Similarity=0.299 Sum_probs=101.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccc--cccccceeeeEEEEEEEecCCeEEEEEeCCCCCc----------chhhhh
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA----------FSNMRS 181 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~--~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~----------f~~~~~ 181 (673)
+..+|+++|++|||||||+++|++..+. ....+|.|..... +.+. + .+.++||||+.. |.....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~-~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVA-D-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEE-T-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEec-C-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4568999999999999999999887632 2334455554332 3332 2 678999999853 222222
Q ss_pred hc---cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHH-HHHHHHHHcCccccccCCceeEEE
Q psy4665 182 RG---AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIE-RTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 182 ~~---~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
.. ...+|.+++|+|++++......+....+...++|++++.||+|+...... +....+... +........+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~ 177 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA---VLAFNGDVQVET 177 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH---HGGGCSCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH---HHhcCCCCceEE
Confidence 22 25689999999999877665556666677789999999999998653211 111222221 111222467899
Q ss_pred eeccCCCChhhHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~ 277 (673)
+||+++.|++++++++.+..
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=1e-14 Score=149.18 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=85.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhcc--------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGA-------- 184 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~-------- 184 (673)
+.++|+++|++|+|||||+|+|++... .....+++|.......+.+ ++..++||||||+.+|.......+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 467899999999999999999998875 3455567777776666766 688999999999988865443322
Q ss_pred -ccCCeEEEEEECCCC-ChHhhHHHHHHHHHc-----CCCEEEEEecCCCCC
Q psy4665 185 -HCTDIVVLVVAADDG-VMEQTVESIRMAREA-----KVPIIVAINKIDKPA 229 (673)
Q Consensus 185 -~~aD~~vlVvda~~g-~~~q~~~~l~~~~~~-----~iP~IvviNK~Dl~~ 229 (673)
..+|++++|+|.+.. ........++.+... ..|+++++||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 278999999988763 333444555555442 249999999999953
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=9.8e-15 Score=155.88 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=107.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc------ccccceeee-----------------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK------SEFGGITQH----------------------------------- 151 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~------~~~~g~T~~----------------------------------- 151 (673)
...|.|+++|.+|+|||||+|+|++..+.. ...++.++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999999877531 222321110
Q ss_pred ----------EEEEEEEecCCeEEEEEeCCCCC-------------cchhhhhhccccC-CeEEEEEECCCCChHhhH-H
Q psy4665 152 ----------IGAFVVTLKSGEQVTFLDTPGHA-------------AFSNMRSRGAHCT-DIVVLVVAADDGVMEQTV-E 206 (673)
Q Consensus 152 ----------~~~~~v~~~~~~~i~liDTpG~~-------------~f~~~~~~~~~~a-D~~vlVvda~~g~~~q~~-~ 206 (673)
.....+..+++..++||||||.. .+..+...++..+ +++++|+|++.+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00111222235679999999963 2344555555444 566667788776665554 3
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhC
Q psy4665 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQ 283 (673)
Q Consensus 207 ~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~ 283 (673)
.++.+...+.|+++|+||+|+.+.... ....+......+ ..+..+++++||+++.|++++++++.+....+..+
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l--~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~ 262 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSH 262 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCC--TTCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccc--cCCceEEEeCCcccccccccHHHHHHHHHHHhccC
Confidence 666666678999999999999753221 112222111111 01346788999999999999999998755554433
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=139.78 Aligned_cols=119 Identities=26% Similarity=0.283 Sum_probs=79.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc---ccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhcccc---
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHC--- 186 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~---~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~--- 186 (673)
.+.++|+++|++|+|||||+++|.+..+.. ...++++.+. .+..+.+|||||++.|...+...+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 456899999999999999999999876533 2222222221 45678999999999997776666554
Q ss_pred -CCeEEEEEECC-CCCh-HhhHHHHHHHHH-------cCCCEEEEEecCCCCCC-cHHHHHHHH
Q psy4665 187 -TDIVVLVVAAD-DGVM-EQTVESIRMARE-------AKVPIIVAINKIDKPAA-DIERTKNML 239 (673)
Q Consensus 187 -aD~~vlVvda~-~g~~-~q~~~~l~~~~~-------~~iP~IvviNK~Dl~~~-~~~~~~~~l 239 (673)
+|++++|+|++ +... ......+..+.. .++|+++|+||+|+.+. ..++..+.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 89999999998 4222 122222322221 38999999999999754 344444443
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.50 E-value=7.6e-14 Score=161.35 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=107.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc-ccccce--------------eeeE-------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGI--------------TQHI------------------------- 152 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~~~~g~--------------T~~~------------------------- 152 (673)
.+.++|+|+|++|+|||||+|+|++..+.. +..+++ |.+.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 356789999999999999999999876433 333333 1111
Q ss_pred --------------EEEEEEecCC---eEEEEEeCCCCCc---chhhhhhccccCCeEEEEEECCCCChHhhHHHHH-HH
Q psy4665 153 --------------GAFVVTLKSG---EQVTFLDTPGHAA---FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR-MA 211 (673)
Q Consensus 153 --------------~~~~v~~~~~---~~i~liDTpG~~~---f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~-~~ 211 (673)
....+.++.. ..++||||||+.+ +......++..+|++++|+|++++......+.|. .+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0011111100 3599999999755 3344456778899999999999988777776664 45
Q ss_pred HHcCCCEEEEEecCCCCCCc---H------HH----HHHHHHHcCccccc---c-CCceeEEEeecc-------------
Q psy4665 212 REAKVPIIVAINKIDKPAAD---I------ER----TKNMLLAQGITVED---L-GGDIQAVPISAL------------- 261 (673)
Q Consensus 212 ~~~~iP~IvviNK~Dl~~~~---~------~~----~~~~l~~~~~~~~~---~-~~~~~~v~iSA~------------- 261 (673)
...+.|+++|+||+|+.... . +. +.+.+......... + ....+++++||+
T Consensus 227 ~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~ 306 (695)
T 2j69_A 227 KGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD 306 (695)
T ss_dssp TTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCC
T ss_pred HhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhh
Confidence 55688999999999985432 1 11 11111111000000 0 123578999999
Q ss_pred -CCCChhhHHHHHHHHH
Q psy4665 262 -TGTNVDNLTEAIERTK 277 (673)
Q Consensus 262 -~g~gv~~l~~~i~~~~ 277 (673)
++.|++++++.+.+..
T Consensus 307 ~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 307 LDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHH
Confidence 9999999999987654
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=1.8e-13 Score=148.10 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=107.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhccccC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGAHCT 187 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~~~a 187 (673)
...|+|+|++|||||||+++|++........+++|.......+.+.+...++++||||+.... ....+.+..+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 467999999999999999999988766666777777777667776444789999999974321 1122345679
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHH-----cCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccC
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMARE-----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~ 262 (673)
+.+++|+|+++....+.....+.+.. ...|.++++||+|+... .. ...+.+.. .. ...+++++||++
T Consensus 237 ~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~-~~~l~~~l---~~--~g~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EA-VKALADAL---AR--EGLAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HH-HHHHHHHH---HT--TTSCEEECCTTT
T ss_pred HhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HH-HHHHHHHH---Hh--cCCeEEEEECCC
Confidence 99999999972122222222222222 36899999999999753 22 22222110 00 135789999999
Q ss_pred CCChhhHHHHHHHHHH
Q psy4665 263 GTNVDNLTEAIERTKN 278 (673)
Q Consensus 263 g~gv~~l~~~i~~~~~ 278 (673)
++|++++++++.+...
T Consensus 309 g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 309 GAGLPALKEALHALVR 324 (416)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999987654
No 186
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=1.4e-13 Score=158.06 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=112.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccc-----------------------------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF----------------------------------------------- 145 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~----------------------------------------------- 145 (673)
...|.|+++|++++|||||+|+|++..+.....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 357899999999999999999999876521111
Q ss_pred ----cceeeeEEEEEEEecCCeEEEEEeCCCCCc-------------chhhhhhcc-ccCCeEEEEEECCCCChHhhH-H
Q psy4665 146 ----GGITQHIGAFVVTLKSGEQVTFLDTPGHAA-------------FSNMRSRGA-HCTDIVVLVVAADDGVMEQTV-E 206 (673)
Q Consensus 146 ----~g~T~~~~~~~v~~~~~~~i~liDTpG~~~-------------f~~~~~~~~-~~aD~~vlVvda~~g~~~q~~-~ 206 (673)
.+++.+.....+..++...++|+||||... +..++..++ ..+|++++|+|++.+...+.. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 122223333344455566799999999643 222333333 578999999999998777665 6
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 207 SIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 207 ~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.+..+...+.|+|+|+||+|+.+.... ....+...... ...+..+++++||++|.|+++|.+++.+....+
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~--l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff 279 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLP--LRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 279 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSC--CSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhh--hhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence 778888889999999999999753221 11111111110 012346889999999999999999988754433
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=7.3e-14 Score=150.90 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=48.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--------------------C---CeEEEEEeCCC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--------------------S---GEQVTFLDTPG 172 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--------------------~---~~~i~liDTpG 172 (673)
.+|+++|++|+|||||+|+|++.....+..+++|.+.....+.+. + ..++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 379999999999999999999988666677888876655432210 1 24799999999
Q ss_pred CCcc----hhhhh---hccccCCeEEEEEECCCC
Q psy4665 173 HAAF----SNMRS---RGAHCTDIVVLVVAADDG 199 (673)
Q Consensus 173 ~~~f----~~~~~---~~~~~aD~~vlVvda~~g 199 (673)
+..+ ..+.. ..++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8643 22222 356899999999999875
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.48 E-value=1.2e-13 Score=141.68 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=84.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhh-------hc--
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRS-------RG-- 183 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~-------~~-- 183 (673)
+.++|+++|++|+|||||+|+|++..+ .....+++|.......+.. ++..++||||||+.+|..... ++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 457899999999999999999998875 3444566666665555655 678999999999987753221 11
Q ss_pred cccCCeEEEEEECCC-CChHhhHHHHHHHHHc-C----CCEEEEEecCCCCC
Q psy4665 184 AHCTDIVVLVVAADD-GVMEQTVESIRMAREA-K----VPIIVAINKIDKPA 229 (673)
Q Consensus 184 ~~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~-~----iP~IvviNK~Dl~~ 229 (673)
...+|++++|+|++. .......+.+..+... + .|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 246899999998865 3444455666655432 3 69999999999964
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.47 E-value=7.4e-14 Score=149.48 Aligned_cols=157 Identities=13% Similarity=0.208 Sum_probs=102.6
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceee-----------------------------------------
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ----------------------------------------- 150 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~----------------------------------------- 150 (673)
....|.|+++|++|||||||+|+|++..+.....+.+|.
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 346679999999999999999999997653222222211
Q ss_pred -------------eEEEEEEEecCCeEEEEEeCCCCCcc-------------hhhhhhccccCCeEEEEEECCC-C-ChH
Q psy4665 151 -------------HIGAFVVTLKSGEQVTFLDTPGHAAF-------------SNMRSRGAHCTDIVVLVVAADD-G-VME 202 (673)
Q Consensus 151 -------------~~~~~~v~~~~~~~i~liDTpG~~~f-------------~~~~~~~~~~aD~~vlVvda~~-g-~~~ 202 (673)
+.....+..+....++||||||+.++ ..+...++..+|++++|+|+.. . ...
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 11111222223557999999998876 4555567899999999998754 2 223
Q ss_pred hhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHH
Q psy4665 203 QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274 (673)
Q Consensus 203 q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 274 (673)
.+...++.+...+.|+++|+||+|+...... ....+..... ....+++++|+.++.++++.+....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~~-----~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEILEGRSF-----KLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHHTTSSS-----CCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHHcCccc-----cccCCeEEEEECChHHhccCCCHHH
Confidence 4455556655668899999999999653211 1222222111 1235789999999998887665543
No 190
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=147.19 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=88.5
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcch-------hhhhhcc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS-------NMRSRGA 184 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~-------~~~~~~~ 184 (673)
......|+|+|.||+|||||+|+|++......+++++|.++....+.+ .+.++.|+||||...-. ......+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 345678999999999999999999999988889999999999988888 68899999999963221 1222456
Q ss_pred ccCCeEEEEEECCCCChHhhHHHHHHHHH-----cCCCEEEEEecCCCC
Q psy4665 185 HCTDIVVLVVAADDGVMEQTVESIRMARE-----AKVPIIVAINKIDKP 228 (673)
Q Consensus 185 ~~aD~~vlVvda~~g~~~q~~~~l~~~~~-----~~iP~IvviNK~Dl~ 228 (673)
+.||++++|+|++++... .......+.. .+.|.++++||+|..
T Consensus 148 ~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 889999999999975422 1112222332 256899999999973
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=147.38 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=78.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccc-cc--------cceeeeEEEEEEEecCCe--EEEEEeCCCC-------Cc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EF--------GGITQHIGAFVVTLKSGE--QVTFLDTPGH-------AA 175 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~-~~--------~g~T~~~~~~~v~~~~~~--~i~liDTpG~-------~~ 175 (673)
...+|+++|++|+|||||+++|++...... .. ++++.......+.. ++. .+++|||||+ +.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccHHH
Confidence 346799999999999999999876543221 11 23333322222332 333 6899999999 55
Q ss_pred chhhhh-------hcccc-------------CCeEEEEEEC-CCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HH
Q psy4665 176 FSNMRS-------RGAHC-------------TDIVVLVVAA-DDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IE 233 (673)
Q Consensus 176 f~~~~~-------~~~~~-------------aD~~vlVvda-~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~ 233 (673)
|..++. .++.. +|+++++++. .++......++++.+ ..++|+|+|+||+|+.... ..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHHH
Confidence 554443 22221 3467777776 456666555555554 3679999999999997532 11
Q ss_pred HHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
...+.+.+.. ... .++++++||+++.+ ++.+..+.+..
T Consensus 194 ~~k~~i~~~~---~~~--~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 194 RLKKRILDEI---EEH--NIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHT---TCC---CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHH---HHC--CCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 1112222221 111 36789999999988 66665555443
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.42 E-value=1.5e-13 Score=136.22 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=96.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccc------ccccceee--------eEEEEEEE-----------------ecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK------SEFGGITQ--------HIGAFVVT-----------------LKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~------~~~~g~T~--------~~~~~~v~-----------------~~~ 161 (673)
.+.++|+++|++|+|||||+++|+...... ...++.+. ......+. ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356899999999999999999997642110 11111110 00001110 012
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC---CcHHHHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA---ADIERTKNM 238 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~---~~~~~~~~~ 238 (673)
+..+.+|||||+-..... ....++.+++|+|+..+.... +......+.|.++++||+|+.+ .+.++..+.
T Consensus 108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 180 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAVGADVEKMKAD 180 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcchhhHHHHHHHH
Confidence 457889999995211111 112468899999998864322 2223335689999999999853 244555555
Q ss_pred HHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHH
Q psy4665 239 LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 239 l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
+... +...+++++||++|.|++++++++.+....
T Consensus 181 ~~~~-------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 181 AKLI-------NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHH-------CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHh-------CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 5443 124689999999999999999999876543
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.40 E-value=2.7e-13 Score=144.77 Aligned_cols=113 Identities=23% Similarity=0.246 Sum_probs=73.3
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNML 239 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l 239 (673)
.+..+.||||||...- ....+..+|++++|+|+..+...+.... ...++|.++|+||+|+.+. ........+
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~----~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK----GVLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT----TSGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH----hHhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 4578999999995432 2223478999999999987654433221 1134699999999999643 122222222
Q ss_pred HHcC--ccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 240 LAQG--ITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 240 ~~~~--~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.... ......++..+++++||++|.|++++++++.+.....
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 2210 0001112246899999999999999999998877553
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=3.9e-13 Score=142.46 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=62.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCC----------------eEEEEEeCCCCCcchh-
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSG----------------EQVTFLDTPGHAAFSN- 178 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~----------------~~i~liDTpG~~~f~~- 178 (673)
.+|+|+|.+|+|||||+|+|++..+.....+++|++.....+.+++. ..+.||||||+..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 57999999999999999999998877777788888776666666331 4799999999987642
Q ss_pred ---h---hhhccccCCeEEEEEECCC
Q psy4665 179 ---M---RSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 179 ---~---~~~~~~~aD~~vlVvda~~ 198 (673)
+ ....++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 1234688999999999986
No 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=3.6e-13 Score=142.99 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=71.1
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNML 239 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l 239 (673)
.+..+.|+||||+..+... ....+|++++|+|++.+...+.... ...++|.++|+||+|+.+. +.....+.+
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l 219 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMY 219 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHH
Confidence 4678999999998766544 3478999999999987643332211 1125789999999999753 222222233
Q ss_pred HHc----CccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 240 LAQ----GITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 240 ~~~----~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
... ..... .+..+++++||++|.|++++++++.+....+
T Consensus 220 ~~~l~~~~~~~~--~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~ 262 (341)
T 2p67_A 220 ESALHILRRKYD--EWQPRVLTCSALEKRGIDEIWHAIIDFKTAL 262 (341)
T ss_dssp HHHHHHSCCSBT--TBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccc--CCCCcEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 221 11000 1135789999999999999999998876533
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=147.37 Aligned_cols=117 Identities=23% Similarity=0.335 Sum_probs=87.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccc---cccccceeeeEEEE----------------------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV---KSEFGGITQHIGAF---------------------------------- 155 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~---~~~~~g~T~~~~~~---------------------------------- 155 (673)
...++|+|+|++|+|||||+|+|++..+. .+..++++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45789999999999999999999998763 34444443211110
Q ss_pred --EEEecCC--eEEEEEeCCCCCc-----------chhhhhhccccCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEE
Q psy4665 156 --VVTLKSG--EQVTFLDTPGHAA-----------FSNMRSRGAHCTDIVVLVVAADD-GVMEQTVESIRMAREAKVPII 219 (673)
Q Consensus 156 --~v~~~~~--~~i~liDTpG~~~-----------f~~~~~~~~~~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~I 219 (673)
.+.++.. ..++||||||+.+ |......++..+|++++|+|+++ +...+...++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 0011000 3689999999875 55666677889999999999988 577778888888877789999
Q ss_pred EEEecCCCCC
Q psy4665 220 VAINKIDKPA 229 (673)
Q Consensus 220 vviNK~Dl~~ 229 (673)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999974
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.38 E-value=7.7e-13 Score=141.07 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=62.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEec--------------------CCeEEEEEeCCCCCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLK--------------------SGEQVTFLDTPGHAA 175 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~--------------------~~~~i~liDTpG~~~ 175 (673)
++|+++|++|+|||||+|+|++........+++|.+.+...+..+ .+..+.||||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 569999999999999999999876555566666666555444432 135799999999876
Q ss_pred ch-------hhhhhccccCCeEEEEEECCC
Q psy4665 176 FS-------NMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 176 f~-------~~~~~~~~~aD~~vlVvda~~ 198 (673)
+. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 53 122335789999999999986
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=138.21 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=90.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------ccc-cccccc-------------------------eeeeEEEEEE---
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SVV-KSEFGG-------------------------ITQHIGAFVV--- 157 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~~-~~~~~g-------------------------~T~~~~~~~v--- 157 (673)
...+.|+|+|++|||||||+|+|++. ++. ....++ ++.......+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34678999999999999999999852 110 010010 1100100000
Q ss_pred E----------ecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 158 T----------LKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 158 ~----------~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
. ...+..+.|+||||..... ......+|++++|+|++.+...+.... .-...|.++++||+|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~----~il~~~~ivVlNK~Dl 224 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR----GIIEMADLVAVTKSDG 224 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSG
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH----HHHhcCCEEEEeeecC
Confidence 0 0146689999999964222 123467999999999987643332211 1246799999999999
Q ss_pred CCCc-HHHHHHHHHHc-Cc-cccccCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 228 PAAD-IERTKNMLLAQ-GI-TVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 228 ~~~~-~~~~~~~l~~~-~~-~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
.+.. .......+... .. ......+..+++++||++|.|++++++++.+....+
T Consensus 225 ~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~~ 280 (349)
T 2www_A 225 DLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLM 280 (349)
T ss_dssp GGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 6421 11111222111 10 000001246789999999999999999998876543
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.28 E-value=2.4e-12 Score=130.98 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=72.6
Q ss_pred eEEEEEeCCCCCcchhhhh------hccccCCeEEEEEECCCCChHhhHH-H----HHHHHHcCCCEEEEEecCCCCCCc
Q psy4665 163 EQVTFLDTPGHAAFSNMRS------RGAHCTDIVVLVVAADDGVMEQTVE-S----IRMAREAKVPIIVAINKIDKPAAD 231 (673)
Q Consensus 163 ~~i~liDTpG~~~f~~~~~------~~~~~aD~~vlVvda~~g~~~q~~~-~----l~~~~~~~iP~IvviNK~Dl~~~~ 231 (673)
..+.||||||+..+..... ..+.. +++++|+|+.......... . .......++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4799999999876643321 24455 8999999987655443322 1 122334589999999999996532
Q ss_pred -HHHHHHHHHHcC-----c----------------cccccCCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 232 -IERTKNMLLAQG-----I----------------TVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 232 -~~~~~~~l~~~~-----~----------------~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
..+..+.+.+.. + ....++...+++++||+++.|++++++++.+...
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 111222111100 0 0122333357899999999999999999987654
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=2.4e-11 Score=120.59 Aligned_cols=152 Identities=24% Similarity=0.254 Sum_probs=90.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEE------------EEEEEec--------------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG------------AFVVTLK-------------------- 160 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~------------~~~v~~~-------------------- 160 (673)
.+.++|+++|++|+|||||+++|+...+.....+.+..++. ...+.+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35789999999999999999999876432211111111111 0111111
Q ss_pred -CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC---CcHHHHH
Q psy4665 161 -SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA---ADIERTK 236 (673)
Q Consensus 161 -~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~---~~~~~~~ 236 (673)
.+..+.++||+|.-.-. ...-...+..+.|+|+..+...... .....+.|.++++||+|+.+ .+.++..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHHHHHHH
Confidence 01157788888841111 1111234566788886543222111 11124689999999999854 2344444
Q ss_pred HHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
+.+... ....+++++||++|.|++++++++.+...
T Consensus 189 ~~~~~~-------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 189 NDAKRI-------NPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHH-------CTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHh-------CCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 444432 12468999999999999999999976543
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.18 E-value=3.1e-11 Score=125.69 Aligned_cols=157 Identities=23% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC-cccccccc------ceeeeEEEEEEEec---CCeEEEEEeCCCC-------Ccc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT-SVVKSEFG------GITQHIGAFVVTLK---SGEQVTFLDTPGH-------AAF 176 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~-~~~~~~~~------g~T~~~~~~~v~~~---~~~~i~liDTpG~-------~~f 176 (673)
-..+|+++|++|+|||||+++|.+. .+.....+ ..|.......+... ....+++|||||+ +.|
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3467899999999999999999875 33222110 01211111111111 1247899999998 555
Q ss_pred hhhhh-------hccc-------------cCCeEEEEEECCC-CChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HHH
Q psy4665 177 SNMRS-------RGAH-------------CTDIVVLVVAADD-GVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IER 234 (673)
Q Consensus 177 ~~~~~-------~~~~-------------~aD~~vlVvda~~-g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~~ 234 (673)
..... ..++ .+++++++++++. +..+...+.++.+. .+.|+++|+||+|+.... ...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence 44432 2221 2344666666544 57666666555553 367999999999996422 111
Q ss_pred HHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHH
Q psy4665 235 TKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277 (673)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 277 (673)
..+...+. ...+ .++++++||+++ +++++++.+.+..
T Consensus 176 ~~~~~~~~---~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDE---IEEH--NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHH---HHHT--TCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHH---HHHc--CCeEEecCCccc-cccHHHHHHHHHh
Confidence 11222111 0111 357899999999 9999988876654
No 202
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.11 E-value=2.8e-10 Score=119.48 Aligned_cols=130 Identities=11% Similarity=0.088 Sum_probs=90.8
Q ss_pred eeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCC-----------CChHhhHHHHHHHHH----
Q psy4665 149 TQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD-----------GVMEQTVESIRMARE---- 213 (673)
Q Consensus 149 T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~-----------g~~~q~~~~l~~~~~---- 213 (673)
|..+....+.+ ++..+.+|||+|++.|+..+..+++.++++|+|+|.++ .........+..+..
T Consensus 148 TiGi~~~~~~~-~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 148 TTGIHEYDFVV-KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCSCEEEEEES-SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeEEEEEEe-eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 44455555666 57889999999999999999999999999999999972 223344555555543
Q ss_pred cCCCEEEEEecCCCCC------------------CcHHHHHHHHHHcC------ccccccC------------CceeEEE
Q psy4665 214 AKVPIIVAINKIDKPA------------------ADIERTKNMLLAQG------ITVEDLG------------GDIQAVP 257 (673)
Q Consensus 214 ~~iP~IvviNK~Dl~~------------------~~~~~~~~~l~~~~------~~~~~~~------------~~~~~v~ 257 (673)
.++|+++++||+|+.. .+.++..+.+.... ..+..-. ..+.+.+
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 4789999999999842 12344444443322 1111000 2467889
Q ss_pred eeccCCCChhhHHHHHHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNM 279 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~ 279 (673)
+||++..|++.+|+.+.+.+-.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=124.72 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=76.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccce------eeeEEEEEEEec-CC--eEEEEEeCCCCCcch-------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI------TQHIGAFVVTLK-SG--EQVTFLDTPGHAAFS------- 177 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~------T~~~~~~~v~~~-~~--~~i~liDTpG~~~f~------- 177 (673)
-..+|+|+|++|+|||||+++|++..+.....+++ |.......+... .+ ..+++|||||+..+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 34678999999999999999999876532211111 111111111111 12 368999999986642
Q ss_pred hhh-----------------hh-cccc--CCeEEEEEECC-CCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc-HH--
Q psy4665 178 NMR-----------------SR-GAHC--TDIVVLVVAAD-DGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD-IE-- 233 (673)
Q Consensus 178 ~~~-----------------~~-~~~~--aD~~vlVvda~-~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~-~~-- 233 (673)
.+. .+ .+.. +++++++++++ ++..+...++++.+.. ++|+|+|+||+|+.... ..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHH
Confidence 110 01 2233 44566666665 5777777777777654 89999999999986421 11
Q ss_pred --HHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 234 --RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 234 --~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
.+.+.+... .++++++||+++.++++++..+.+
T Consensus 189 k~~i~~~~~~~---------~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 189 KKQIMKEIQEH---------KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHH---------TCCCCCCC----------------
T ss_pred HHHHHHHHHHc---------CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 122222222 356788999999998877665543
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=4.4e-10 Score=118.84 Aligned_cols=113 Identities=21% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI--ERTKNM 238 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~ 238 (673)
.+..+.|+||||...-... ....+|++++|+|+..+...+... ..+ .++|.++++||+|+..... ....+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~~i~--~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK--KGI--FELADMIAVNKADDGDGERRASAAASE 218 (337)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC--TTH--HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHHHHH--HHH--hccccEEEEEchhccCchhHHHHHHHH
Confidence 4678999999997532211 236799999999987543211100 000 1347788889999753211 111222
Q ss_pred HHHcCccccc--cCCceeEEEeeccCCCChhhHHHHHHHHHHHH
Q psy4665 239 LLAQGITVED--LGGDIQAVPISALTGTNVDNLTEAIERTKNML 280 (673)
Q Consensus 239 l~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 280 (673)
+......+.. ..+..+++++||+++.|+++|++.+.+....+
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL 262 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2211100110 01135789999999999999999998876543
No 205
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.01 E-value=7.8e-10 Score=117.34 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=92.8
Q ss_pred eeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCC-----------ChHhhHHHHHHHHH----
Q psy4665 149 TQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG-----------VMEQTVESIRMARE---- 213 (673)
Q Consensus 149 T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g-----------~~~q~~~~l~~~~~---- 213 (673)
|..+....+.+ ++..+.+|||+|++.|...+..++..++++|+|+|.++. .......++..+..
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eeceEEEEEee-CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 44455556666 578999999999999999999999999999999999973 13344555555544
Q ss_pred cCCCEEEEEecCCCCC------------------CcHHHHHHHHHHcCccccc--cCCceeEEEeeccCCCChhhHHHHH
Q psy4665 214 AKVPIIVAINKIDKPA------------------ADIERTKNMLLAQGITVED--LGGDIQAVPISALTGTNVDNLTEAI 273 (673)
Q Consensus 214 ~~iP~IvviNK~Dl~~------------------~~~~~~~~~l~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i 273 (673)
.++|+|+++||+|+.. .+.++..+.+......+.. ....+.++++||+++.|++++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 3789999999999841 2344444444422111111 1235789999999999999999999
Q ss_pred HHHHH
Q psy4665 274 ERTKN 278 (673)
Q Consensus 274 ~~~~~ 278 (673)
.+...
T Consensus 339 ~~~i~ 343 (353)
T 1cip_A 339 TDVII 343 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 206
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=8.2e-10 Score=114.96 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=106.3
Q ss_pred HHHHHHhcCccc-cccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCC-hHh-hHH
Q psy4665 130 TLLDTLRNTSVV-KSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQ-TVE 206 (673)
Q Consensus 130 TLl~~L~~~~~~-~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q-~~~ 206 (673)
+|+.++..+.+. ..+.+++...+. +....+.++.+||| ++.|..++..+++.+|++++|+|+++.. ... ...
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~---~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE---YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE---EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE---EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 577777777766 455555442222 22222337999999 9999999999999999999999999864 333 334
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCC
Q psy4665 207 SIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGI 285 (673)
Q Consensus 207 ~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~ 285 (673)
++..+...++|+++|+||+|+.+... ++..+.+.... .. .+++++||++|.|++++++.+..
T Consensus 107 ~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~----~~---~~~~~~SAktg~gv~~lf~~l~g---------- 169 (301)
T 1u0l_A 107 FLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS----GL---YPIVKTSAKTGMGIEELKEYLKG---------- 169 (301)
T ss_dssp HHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHT----TT---SCEEECCTTTCTTHHHHHHHHSS----------
T ss_pred HHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHh----hh---CcEEEEECCCCcCHHHHHHHhcC----------
Confidence 45555667899999999999975321 11222222221 11 57999999999999999987631
Q ss_pred CcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 286 TVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 286 ~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
. ++..-..+|.|-..|+..|..
T Consensus 170 -------e--iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 -------K--ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp -------S--EEEEECSTTSSHHHHHHHHST
T ss_pred -------C--eEEEECCCCCcHHHHHHHhcc
Confidence 1 123344678899999988753
No 207
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.95 E-value=1.6e-09 Score=93.58 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=70.4
Q ss_pred EEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCC
Q psy4665 566 EVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPS 645 (673)
Q Consensus 566 ~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~ 645 (673)
..+|+..|+++|.+- . .+.+.| +|..|.+++|.++ .+++.+ |+|+||+.+++.|++|.+|++|+|.++|.+
T Consensus 32 ~~P~k~~ilp~~~~v-F--gpvivG-rVe~G~LK~G~~V---Pg~~~v--g~VkSIE~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIM-G--KDVIIG-TVESGMIGVGFKV---KGPSGI--GGIVRIERNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp SCSEEEEEEEEEEET-T--EEEEEE-EEEEEEEETTCEE---ECSSCE--EEEEEEEETTEEESEEETTCEEEEEEESCC
T ss_pred cCcEEEEEEecCCeE-E--CCeeEE-EEeEEEEcCCCCc---CCCceE--EEEEEEEECCcCcCCcCCCCEEEEEEECCc
Confidence 356999999955544 1 457888 9999999999887 444233 899999999999999999999999999976
Q ss_pred CCCCCCCEEEEEE
Q psy4665 646 IEFEPGDTIVCFV 658 (673)
Q Consensus 646 ~~~~~gD~i~~~~ 658 (673)
+++++||++++|.
T Consensus 103 ~~I~~GdVLyv~~ 115 (116)
T 1xe1_A 103 GKVKKGDVLEIYQ 115 (116)
T ss_dssp CCCCTTCEEEEEC
T ss_pred cccCCCcEEEEec
Confidence 6999999999873
No 208
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.94 E-value=2.2e-09 Score=114.19 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=95.4
Q ss_pred CCCChhHH--HHHHhcCcccccc-----ccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEEC
Q psy4665 124 VDHGKTTL--LDTLRNTSVVKSE-----FGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196 (673)
Q Consensus 124 ~n~GKSTL--l~~L~~~~~~~~~-----~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda 196 (673)
+++.|--| +.++....+.+.. ....|..+....+.+ ++..+.+|||||++.|...+..++..++++|+|+|.
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~-~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dl 234 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeee-CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEEC
Confidence 45666655 5666555443321 122344455556666 578999999999999999999999999999999999
Q ss_pred CCC-----------ChHhhHHHHHHHHH----cCCCEEEEEecCCCCC-------------------CcHHHHHHHHHHc
Q psy4665 197 DDG-----------VMEQTVESIRMARE----AKVPIIVAINKIDKPA-------------------ADIERTKNMLLAQ 242 (673)
Q Consensus 197 ~~g-----------~~~q~~~~l~~~~~----~~iP~IvviNK~Dl~~-------------------~~~~~~~~~l~~~ 242 (673)
++- ........+..+.. .++|+|+++||+|+.. .+.++....+...
T Consensus 235 s~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~ 314 (362)
T 1zcb_A 235 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 314 (362)
T ss_dssp TCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHH
Confidence 972 12234445555543 3689999999999841 2334444433221
Q ss_pred Ccccccc--CCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 243 GITVEDL--GGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 243 ~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
...+... ...+.++++||+++.|++++|+++.+...
T Consensus 315 f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 315 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 1111111 12467899999999999999999877653
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=7.4e-10 Score=122.43 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHh------cCcccc--cc--ccce--------e-eeEEEEEEE---------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLR------NTSVVK--SE--FGGI--------T-QHIGAFVVT--------------- 158 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~------~~~~~~--~~--~~g~--------T-~~~~~~~v~--------------- 158 (673)
.++++|+++|++|+|||||+++|. +.++.. .+ .++. + ..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999997 333211 00 0000 0 000000000
Q ss_pred e-cCCeEEEEEeCCCCCcc----hhhhhhc--cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCE-EEEEecCCCCCC
Q psy4665 159 L-KSGEQVTFLDTPGHAAF----SNMRSRG--AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI-IVAINKIDKPAA 230 (673)
Q Consensus 159 ~-~~~~~i~liDTpG~~~f----~~~~~~~--~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~-IvviNK~Dl~~~ 230 (673)
+ ..+..+.||||||.... ....... +..+|.+++|+|+..+.. ....+..+... +|+ ++++||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 0 15678999999997532 1111111 237899999999998753 33334433332 785 899999998643
Q ss_pred cHHHHHHHHHHcCccc---------cccCCceeEEEeeccCCCC-hhhHHHHHHHH
Q psy4665 231 DIERTKNMLLAQGITV---------EDLGGDIQAVPISALTGTN-VDNLTEAIERT 276 (673)
Q Consensus 231 ~~~~~~~~l~~~~~~~---------~~~~~~~~~v~iSA~~g~g-v~~l~~~i~~~ 276 (673)
...........+..+ ..+....+.+++|+..|.| +++|++++.+.
T Consensus 256 -~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 -GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp -CTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred -hHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 222333333333221 1111122445689999999 99999998765
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=116.32 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=53.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecC----------------CeEEEEEeCCCCCcch
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKS----------------GEQVTFLDTPGHAAFS 177 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~----------------~~~i~liDTpG~~~f~ 177 (673)
...+|+++|.+|+|||||+|+|++..+.....+++|.++....+.+++ ...++||||||+..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 456899999999999999999999888777888999888777776642 2359999999987655
Q ss_pred h-------hhhhccccCCeEEEEEECCC
Q psy4665 178 N-------MRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 178 ~-------~~~~~~~~aD~~vlVvda~~ 198 (673)
. .....++.+|++++|+|+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3 33456789999999999975
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.80 E-value=2.3e-10 Score=122.47 Aligned_cols=111 Identities=15% Similarity=0.198 Sum_probs=76.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC------ccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh-------h
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT------SVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR-------S 181 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~------~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~-------~ 181 (673)
..+|+++|.+|+|||||+|+|++. ....+..+|+|.+... +.+. ..+.++||||......+. .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~--~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLE--SGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECS--TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeC--CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 468999999999999999999886 4556677888887654 3332 248999999974332111 1
Q ss_pred hcc---ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 182 RGA---HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 182 ~~~---~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
..+ ...|.+++++++...........+..+...+.|+++++||+|...
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 122 668999999998543222222223334456789999999999854
No 212
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.75 E-value=2.4e-08 Score=104.45 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=91.2
Q ss_pred eeeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECC-------CC----ChHhhHHHHHHHHH---
Q psy4665 148 ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-------DG----VMEQTVESIRMARE--- 213 (673)
Q Consensus 148 ~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~-------~g----~~~q~~~~l~~~~~--- 213 (673)
.|..+....+.. ++.++.+|||+|++.|+..+..+++.++++|+|+|.+ +. ........+..+..
T Consensus 153 ~TiGi~~~~~~~-~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 153 PTTGIIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred ceeeEEEEEEEe-eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 344555566666 6789999999999999999999999999999999876 21 12234455555543
Q ss_pred -cCCCEEEEEecCCCCC-------------------CcHHHHHHHHHHcCcccc-ccCCceeEEEeeccCCCChhhHHHH
Q psy4665 214 -AKVPIIVAINKIDKPA-------------------ADIERTKNMLLAQGITVE-DLGGDIQAVPISALTGTNVDNLTEA 272 (673)
Q Consensus 214 -~~iP~IvviNK~Dl~~-------------------~~~~~~~~~l~~~~~~~~-~~~~~~~~v~iSA~~g~gv~~l~~~ 272 (673)
.++|+++++||+|+.. .+.++..+.+......+. .-...+.+.++||+++.|++.+|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 3689999999999842 234444444433211111 1112467889999999999999999
Q ss_pred HHHHHH
Q psy4665 273 IERTKN 278 (673)
Q Consensus 273 i~~~~~ 278 (673)
+.+.+-
T Consensus 312 v~~~Il 317 (327)
T 3ohm_A 312 VKDTIL 317 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=3.4e-10 Score=121.10 Aligned_cols=123 Identities=14% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc-------cccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh-------
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS-------VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR------- 180 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~-------~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~------- 180 (673)
..+|+++|.+|+|||||+|+|++.. ...+..+++|.+.... .+.. .+.++||||..+...+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~--~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLDE--ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESSS--SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--EecC--CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4679999999999999999998752 3346677888776543 3322 38899999974432111
Q ss_pred -hh--ccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC-cHHHHHHHHHH
Q psy4665 181 -SR--GAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA-DIERTKNMLLA 241 (673)
Q Consensus 181 -~~--~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~-~~~~~~~~l~~ 241 (673)
.. .....+.+++++++...........+..+...+.|+++++||+|.... ..+...+.+.+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~ 300 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKN 300 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHH
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHH
Confidence 11 136678899999985432222222233344567899999999998653 33444444443
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.70 E-value=2.8e-08 Score=106.68 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=86.6
Q ss_pred eeeEEEEEEEecCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCC----------CC-hHhhHHHHHHHHH----
Q psy4665 149 TQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADD----------GV-MEQTVESIRMARE---- 213 (673)
Q Consensus 149 T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~----------g~-~~q~~~~l~~~~~---- 213 (673)
|..+....+.+ ++..+.+|||+|++.|...+..+++.++++|+|+|.++ .. ......++..+..
T Consensus 204 TiGi~~~~~~~-~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 204 TSGIFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred eeeeEEEEeec-CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 44444455666 57899999999999999999999999999999999997 22 2233445555543
Q ss_pred cCCCEEEEEecCCCCCCc---------------------------------HHHHHHHHHHcCcccc----ccCCceeEE
Q psy4665 214 AKVPIIVAINKIDKPAAD---------------------------------IERTKNMLLAQGITVE----DLGGDIQAV 256 (673)
Q Consensus 214 ~~iP~IvviNK~Dl~~~~---------------------------------~~~~~~~l~~~~~~~~----~~~~~~~~v 256 (673)
.++|+++++||+|+.... .++....+........ .-...+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 368999999999983210 1112221111000000 000135678
Q ss_pred EeeccCCCChhhHHHHHHHHHH
Q psy4665 257 PISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 257 ~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
++||+++.|++++|+++.+.+.
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHH
Confidence 9999999999999999877553
No 215
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.68 E-value=4.4e-08 Score=103.79 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=94.7
Q ss_pred CCCChhHH--HHHHhcCcccccc-----ccceeeeEEEEEEEec-----CCeEEEEEeCCCCCcchhhhhhccccCCeEE
Q psy4665 124 VDHGKTTL--LDTLRNTSVVKSE-----FGGITQHIGAFVVTLK-----SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVV 191 (673)
Q Consensus 124 ~n~GKSTL--l~~L~~~~~~~~~-----~~g~T~~~~~~~v~~~-----~~~~i~liDTpG~~~f~~~~~~~~~~aD~~v 191 (673)
+++.+.-| +.++......+.. ....|..+....+.+. ....+.+|||+|++.|...+..+++.++++|
T Consensus 132 ~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI 211 (354)
T 2xtz_A 132 PDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVI 211 (354)
T ss_dssp CTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEE
T ss_pred hccHHHHHHHHHHHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEE
Confidence 56666555 4555554433221 1223444444444442 2357999999999999999999999999999
Q ss_pred EEEECC----------CC-ChHhhHHHHHHHHH----cCCCEEEEEecCCCCCC------------------------cH
Q psy4665 192 LVVAAD----------DG-VMEQTVESIRMARE----AKVPIIVAINKIDKPAA------------------------DI 232 (673)
Q Consensus 192 lVvda~----------~g-~~~q~~~~l~~~~~----~~iP~IvviNK~Dl~~~------------------------~~ 232 (673)
+|+|.+ +. ........+..+.. .++|+++++||+|+... +.
T Consensus 212 ~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~ 291 (354)
T 2xtz_A 212 FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEI 291 (354)
T ss_dssp EEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHH
T ss_pred EEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCH
Confidence 999987 21 22334455555543 36899999999998321 01
Q ss_pred HHHHHHHHHcCccc------cc-cCCceeEEEeeccCCCChhhHHHHHHHHHH
Q psy4665 233 ERTKNMLLAQGITV------ED-LGGDIQAVPISALTGTNVDNLTEAIERTKN 278 (673)
Q Consensus 233 ~~~~~~l~~~~~~~------~~-~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 278 (673)
++..+.+......+ .. -.....++++||+++.|++++|+++.+...
T Consensus 292 ~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 292 EHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 22222222110000 00 012345789999999999999999877653
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=5.9e-08 Score=103.96 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecC----------------CeEEEEEeCCCCCc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKS----------------GEQVTFLDTPGHAA 175 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~----------------~~~i~liDTpG~~~ 175 (673)
.+..+|+|+|++|+|||||+|+|++... .....|++|.++....+.+++ +..+.++||||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457899999999999999999999877 777889999888877777743 14689999999543
Q ss_pred -------chhhhhhccccCCeEEEEEECCC
Q psy4665 176 -------FSNMRSRGAHCTDIVVLVVAADD 198 (673)
Q Consensus 176 -------f~~~~~~~~~~aD~~vlVvda~~ 198 (673)
+.......++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22333446688999999999975
No 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.56 E-value=1.6e-07 Score=97.61 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=82.9
Q ss_pred CCcchhhhhhccccCCeEEEEEECCCCC-hHhh-HHHHHHHHHcCCCEEEEEecCCCCCCc----HHHHHHHHHHcCccc
Q psy4665 173 HAAFSNMRSRGAHCTDIVVLVVAADDGV-MEQT-VESIRMAREAKVPIIVAINKIDKPAAD----IERTKNMLLAQGITV 246 (673)
Q Consensus 173 ~~~f~~~~~~~~~~aD~~vlVvda~~g~-~~q~-~~~l~~~~~~~iP~IvviNK~Dl~~~~----~~~~~~~l~~~~~~~ 246 (673)
++.|..+...+++.+|++++|+|++++. .... .+++..+...++|+++|+||+|+.+.. .++..+.....
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~---- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC----
Confidence 6777777777899999999999999864 3333 355556667899999999999997532 11111112121
Q ss_pred cccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 247 EDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 247 ~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
..+++++||++|.|+++|++.+.. .+......+|.|-..|+..|.
T Consensus 142 -----g~~~~~~SA~~g~gi~~L~~~l~G-------------------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 142 -----GYDVLKVSAKTGEGIDELVDYLEG-------------------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp -----TCEEEECCTTTCTTHHHHHHHTTT-------------------CEEEEECSTTSSHHHHHHHHH
T ss_pred -----CCeEEEEECCCCCCHHHHHhhccC-------------------cEEEEECCCCCCHHHHHHHHH
Confidence 257999999999999999876531 122455678999999999886
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.49 E-value=4.2e-07 Score=98.02 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccc----cccceeeeEEEEEEEecCC--eEEEEEeCCCCCcch------------
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKS----EFGGITQHIGAFVVTLKSG--EQVTFLDTPGHAAFS------------ 177 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~----~~~g~T~~~~~~~v~~~~~--~~i~liDTpG~~~f~------------ 177 (673)
++++|+|++|+|||||++.|.+..+... ..++.+.......+.. .+ ..++++|+||.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-CccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4599999999999999999988753211 1233333322222222 22 268999999974321
Q ss_pred ------hhhhhc---------cccC--C-eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 178 ------NMRSRG---------AHCT--D-IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 178 ------~~~~~~---------~~~a--D-~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
...... ...+ | ++++++|+.++....+.+.++.+. .+.|+|+|+||+|...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 001111 1122 2 466788888888888888888776 7899999999999864
No 219
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=6.1e-08 Score=105.52 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC------ccc--ccc---------------ccc--------eeeeEEE---EEEEe
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT------SVV--KSE---------------FGG--------ITQHIGA---FVVTL 159 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~------~~~--~~~---------------~~g--------~T~~~~~---~~v~~ 159 (673)
++.+|+++|++|+||||+++.|... ++. ... ..+ .+.+... ..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999652 111 000 000 1111100 00000
Q ss_pred cCCeEEEEEeCCCCCcchhhh------hhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCC-C-EEEEEecCCCCC
Q psy4665 160 KSGEQVTFLDTPGHAAFSNMR------SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV-P-IIVAINKIDKPA 229 (673)
Q Consensus 160 ~~~~~i~liDTpG~~~f~~~~------~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~i-P-~IvviNK~Dl~~ 229 (673)
..+..+.|+||||........ ...+..+|.+++|+|+..+. .....++... ..+ | ..+++||+|...
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 145679999999975432111 12234689999999998764 2233333322 246 7 899999999853
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.44 E-value=6.5e-07 Score=86.40 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=91.4
Q ss_pred ccCCCCEEEEEeCC-CCChhHHHHHHhcCc-cc-c-----ccc----cceeeeEEEE----EEEecC-------------
Q psy4665 111 LMKRPPVVTIMGHV-DHGKTTLLDTLRNTS-VV-K-----SEF----GGITQHIGAF----VVTLKS------------- 161 (673)
Q Consensus 111 ~~~~~~~V~ivG~~-n~GKSTLl~~L~~~~-~~-~-----~~~----~g~T~~~~~~----~v~~~~------------- 161 (673)
.....|++|+.|+. ..=+.+|+.+|.... .. . ... .|++..+... .+.+..
T Consensus 12 ~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~ 91 (227)
T 3l82_B 12 IIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEH 91 (227)
T ss_dssp CCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------------
T ss_pred ccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhh
Confidence 34567899999974 344668999998754 11 1 111 1222211100 011110
Q ss_pred ---CeEEEEEeCC------CCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHH----HHHH----cCCCEEEEEec
Q psy4665 162 ---GEQVTFLDTP------GHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR----MARE----AKVPIIVAINK 224 (673)
Q Consensus 162 ---~~~i~liDTp------G~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~----~~~~----~~iP~IvviNK 224 (673)
..++....+| |+..++.+|..++..+|++|+|||++|.......+.+. .+.. .++|++|+.||
T Consensus 92 ~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 92 TSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 0123344555 78899999999999999999999999853323444332 2211 47899999999
Q ss_pred C-CCCCC-cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhHHHHHHH
Q psy4665 225 I-DKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275 (673)
Q Consensus 225 ~-Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 275 (673)
. |++++ +..++.+.+.-.. ....+.+.++||.+|+|+.+-++|+.+
T Consensus 172 qqDlp~Ams~~EI~e~L~L~~-----l~R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 172 SQGDVKRMPCFYLAHELHLNL-----LNHPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp SSTTSCBCCHHHHHHHTTGGG-----GCSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred CcCccCCCCHHHHHHHcCCcC-----CCCCEEEEEeECCCCcCHHHHHHHHHH
Confidence 5 78765 4444444432221 224678999999999999999999864
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.42 E-value=1e-06 Score=94.99 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=94.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcccc-cc--ccc--eeeeEEEEEEEecCCeEEEEEeCCCCCcc----hhhh-hhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SE--FGG--ITQHIGAFVVTLKSGEQVTFLDTPGHAAF----SNMR-SRG 183 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~~~-~~--~~g--~T~~~~~~~v~~~~~~~i~liDTpG~~~f----~~~~-~~~ 183 (673)
....++|+|++|+|||||+|.|.+-.... .. ..+ +|.. ...........++++|+||...- .... ...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 45689999999999999999998832111 00 111 1211 11122212236899999996321 1111 123
Q ss_pred cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCC-------C---CcHHHHHHHHHHcCc-cccccC-C
Q psy4665 184 AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP-------A---ADIERTKNMLLAQGI-TVEDLG-G 251 (673)
Q Consensus 184 ~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~-------~---~~~~~~~~~l~~~~~-~~~~~~-~ 251 (673)
+...+..++ +|... .+.|....++.+...+.|+++|.||.|+. + ....++.+.+.+... .+.+.+ .
T Consensus 146 L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 146 FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444455554 77654 46777788888888899999999999973 1 123344444433210 001111 1
Q ss_pred ceeEEEeec--cCCCChhhHHHHHHHH
Q psy4665 252 DIQAVPISA--LTGTNVDNLTEAIERT 276 (673)
Q Consensus 252 ~~~~v~iSA--~~g~gv~~l~~~i~~~ 276 (673)
...++++|+ ..+.|++++.+.+.+.
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 346899999 6667799988888654
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.40 E-value=6.5e-07 Score=91.35 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCccccc--------cccceeeeEEEEEEEec-C--CeEEEEEeCCCCCcch-------
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKS--------EFGGITQHIGAFVVTLK-S--GEQVTFLDTPGHAAFS------- 177 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~~~~--------~~~g~T~~~~~~~v~~~-~--~~~i~liDTpG~~~f~------- 177 (673)
++++++|++|+|||||++.|.+...... ..+..+.... ..+... . ...++++|+||+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~-i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKA-IGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCE-EEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeee-eEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5799999999999999999987432111 0111111000 111111 1 1268999999953211
Q ss_pred hh-----------hhh----------ccccCCeEEEEEECC-CCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 178 NM-----------RSR----------GAHCTDIVVLVVAAD-DGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 178 ~~-----------~~~----------~~~~aD~~vlVvda~-~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
.. ... .+..++++++++|.. +|..+.+.+.++.+... +++|+++||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 00 000 123468889999865 78899999999888877 99999999999864
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=2.8e-07 Score=103.56 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=62.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCcccccccccee----eeEEEEEEEe--cCCeEEEEEeCCCCCcchh------hh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT----QHIGAFVVTL--KSGEQVTFLDTPGHAAFSN------MR 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T----~~~~~~~v~~--~~~~~i~liDTpG~~~f~~------~~ 180 (673)
.+..+|+|+|.||+|||||+|+|++..... ..+++| ..+..+.... ..+..+.|+||||..+... ..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 456789999999999999999999876432 233333 3322221111 2567899999999754322 01
Q ss_pred hh--ccccCCeEEEEEECCCCChHhhHHHHHHHHH
Q psy4665 181 SR--GAHCTDIVVLVVAADDGVMEQTVESIRMARE 213 (673)
Q Consensus 181 ~~--~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~ 213 (673)
.. ..-.++ ++|+|+..++..+....+..+..
T Consensus 115 ~fala~llss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IFALAVLLSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 10 111133 68888888888888877766544
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.28 E-value=2e-06 Score=88.28 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=84.3
Q ss_pred EEeCCCCC-cchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHHHHHHHHcCcc
Q psy4665 167 FLDTPGHA-AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGIT 245 (673)
Q Consensus 167 liDTpG~~-~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~~~~l~~~~~~ 245 (673)
+-+.|||. .........+..+|++++|+|+.++........-+.+ .++|.++++||+|+.+. ......+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~--~~~~~~~~~~--- 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA--AVTQQWKEHF--- 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH--HHHHHHHHHH---
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH--HHHHHHHHHH---
Confidence 34679996 4455566688999999999999997766543332222 57999999999999752 2222222211
Q ss_pred ccccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHh----CCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLA----QGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 246 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~----~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
+.. ..+++++||+++.|++++++.+.+......+ .+. ....+. +.+-..+|.|-..|++.|.
T Consensus 76 -~~~--g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~----~~~~~~-v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 76 -ENQ--GIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGV----KPRAIR-ALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp -HTT--TCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTC----CCCCEE-EEEEESTTSSHHHHHHHHH
T ss_pred -Hhc--CCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCC----CCCCce-EEEEecCCCchHHHHHHHh
Confidence 111 2478999999999999999988776653321 111 111222 2334577889999999885
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.26 E-value=4.9e-06 Score=90.16 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc------Cccc--cc--c-------------ccceeeeEE---EEEE--------Ee
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN------TSVV--KS--E-------------FGGITQHIG---AFVV--------TL 159 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~------~~~~--~~--~-------------~~g~T~~~~---~~~v--------~~ 159 (673)
++..|+++|.+|+||||++..|.. .++. .. . ..++..... .... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999863 2211 00 0 011110000 0000 00
Q ss_pred -cCCeEEEEEeCCCCCcchhh----hh--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH
Q psy4665 160 -KSGEQVTFLDTPGHAAFSNM----RS--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232 (673)
Q Consensus 160 -~~~~~i~liDTpG~~~f~~~----~~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~ 232 (673)
..+..+.|+||||....... .. ..+..+|.++||+|+..|. ............--+..+++||+|.... .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~-g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAK-G 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSS-H
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCccc-c
Confidence 03467999999995332211 11 2334579999999998753 2334444444444457899999998642 2
Q ss_pred HHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
.......... ..|+.+++. |+++++|
T Consensus 256 G~~ls~~~~~---------g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVAAT---------GAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHHHHHTT---------CCCEEEEEC--SSSTTCE
T ss_pred cHHHHHHHHH---------CCCEEEEEc--CCChHHh
Confidence 2223322222 345666664 6666543
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.22 E-value=1.4e-06 Score=93.04 Aligned_cols=133 Identities=22% Similarity=0.189 Sum_probs=84.7
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHH
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLA 241 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~ 241 (673)
.+.-+++| +++|..........++++++|+|+++.......+..+.+ .+.|+++|+||+|+...+ .+...+.+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 44455555 889999988777899999999999986543222222222 278999999999996532 3344444332
Q ss_pred cCccccccCCc-eeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 242 QGITVEDLGGD-IQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 242 ~~~~~~~~~~~-~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
. ....+.. .+++++||++|.|++++++.+.+.... . -+.+-..+|.|-..|+++|...
T Consensus 127 ~---~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~--------------~-~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 127 M---AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG--------------G-DVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp H---HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT--------------S-CEEEECCTTSSHHHHHHHHHHH
T ss_pred H---HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc--------------C-cEEEEcCCCCchHHHHHHHHhh
Confidence 1 0111111 368999999999999999988765311 0 1244567889999999999865
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.20 E-value=8.8e-07 Score=90.97 Aligned_cols=58 Identities=31% Similarity=0.457 Sum_probs=37.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc-cccccccceeeeEEEEEEEecCCeEEEEEeCCCCC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHA 174 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~-~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~ 174 (673)
.+..+|+++|.||+|||||+|+|.+.. ...+..+|+|.+... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV--GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE--TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe--CCCEEEEECcCcC
Confidence 456789999999999999999999876 556677888877642 333 3479999999974
No 228
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.19 E-value=4.7e-06 Score=84.29 Aligned_cols=101 Identities=14% Similarity=-0.044 Sum_probs=71.5
Q ss_pred CCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHH----HHH---H-HcCCCEEEEEec-CCCCCC-cHHHHHHHHH
Q psy4665 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESI----RMA---R-EAKVPIIVAINK-IDKPAA-DIERTKNMLL 240 (673)
Q Consensus 171 pG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l----~~~---~-~~~iP~IvviNK-~Dl~~~-~~~~~~~~l~ 240 (673)
.|++.++.++..++..+|++|+|||++|..-....+.+ ..+ . ..+.|++|+.|| .|++++ +..++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 47889999999999999999999999985322233322 222 1 158999999997 588765 3444444332
Q ss_pred HcCccccccCCceeEEEeeccCCCChhhHHHHHHHH
Q psy4665 241 AQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276 (673)
Q Consensus 241 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 276 (673)
-.. ......+.++||.+|+|+.+-++|+.+.
T Consensus 275 L~~-----l~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNL-----LNHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGG-----GCSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred Ccc-----CCCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 211 2245789999999999999999999765
No 229
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.12 E-value=8.6e-06 Score=79.33 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc--ceEEEEec--ccccceeccCccccccCcEEE-eeeC
Q psy4665 327 YGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA--WAKVRSIS--RKTLINTALGTVQRTSGTVKI-SLGF 401 (673)
Q Consensus 327 ~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~--~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~-i~gl 401 (673)
.+.|++..|.+++. +.|++..++|.+|++++||.+...+. ..+|++|+ ++++++|.|||. |++ +.|+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~------V~l~L~gi 74 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGEN------LKIRLKGI 74 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSE------EEEEEEES
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCE------EEEEEcCC
Confidence 45789999999876 78999999999999999999987664 47788877 889999999999 884 3455
Q ss_pred CCCCCCCCCCeEeecCChhhHHHHHHHH
Q psy4665 402 KINPFCPSGDVDGSVEALLDVFDTYTSA 429 (673)
Q Consensus 402 ~~~~~~~~Gd~l~~~~~~~~~~~~~~~~ 429 (673)
+. ..+.+||+++..++++.....|.++
T Consensus 75 ~~-~di~rG~vl~~~~~~~~~~~~f~a~ 101 (204)
T 3e1y_E 75 EE-EEILPGFILCDPNNLCHSGRTFDAQ 101 (204)
T ss_dssp SS-SCCCTTCEEBCSSSCCCCCSEEEEE
T ss_pred CH-HHCccceEEECCCCCCchhEEEEEE
Confidence 43 3467899999887754443344333
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=3.2e-06 Score=91.51 Aligned_cols=142 Identities=22% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc------Ccccc--c---------------cccceeeeEE---EE-------EEE-e
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN------TSVVK--S---------------EFGGITQHIG---AF-------VVT-L 159 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~------~~~~~--~---------------~~~g~T~~~~---~~-------~v~-~ 159 (673)
++..|+++|++|+||||++..|.. .++.. . ...+...... .. .+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 567899999999999999999862 22110 0 0011100000 00 000 0
Q ss_pred -cCCeEEEEEeCCCCCc------chhhhh--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC
Q psy4665 160 -KSGEQVTFLDTPGHAA------FSNMRS--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 160 -~~~~~i~liDTpG~~~------f~~~~~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~ 230 (673)
..+..+.|+||||... +..... .....+|.+++|+|+..|. .....++.....--+..+++||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEecccccc-
Confidence 1356799999999644 111111 1223469999999998753 233444444444456889999999863
Q ss_pred cHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
............ ..|+.+++. |++++++
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSSCE
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChHhC
Confidence 333344443333 246667765 7776543
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.05 E-value=3.5e-06 Score=89.91 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=82.5
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc--HHHHHHHHHHc
Q psy4665 165 VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD--IERTKNMLLAQ 242 (673)
Q Consensus 165 i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~--~~~~~~~l~~~ 242 (673)
+.-+++ ..++|..++....+.+|++++|+|+++.. ..+...+... ..++|+++|+||+|+.... .+...+.+...
T Consensus 49 ~~~v~~-~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 49 IQDVSL-TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS 125 (368)
T ss_dssp --------CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH
T ss_pred cccCCC-CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH
Confidence 333443 45789988887888889999999999732 1111222221 1378999999999996432 33333333221
Q ss_pred CccccccCC-ceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHHH
Q psy4665 243 GITVEDLGG-DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQ 317 (673)
Q Consensus 243 ~~~~~~~~~-~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~~ 317 (673)
. ...+. ..+++++||++|.|++++++.+.+... + . .+.+-..+|.|-..|+++|...
T Consensus 126 ~---~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~-----~---------~-~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 126 A---KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG-----G---------K-DVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp H---HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT-----T---------S-CEEEEEBTTSSHHHHHHHHHHH
T ss_pred H---HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc-----c---------c-eEEEecCCCCChhHHHHHHHhh
Confidence 0 01111 136899999999999999999876431 1 0 1134457788999999998765
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.01 E-value=3.8e-05 Score=79.26 Aligned_cols=141 Identities=22% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc------Cccc--ccc--c-------------cceeeeEE-----E-----EEE-Ee
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN------TSVV--KSE--F-------------GGITQHIG-----A-----FVV-TL 159 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~------~~~~--~~~--~-------------~g~T~~~~-----~-----~~v-~~ 159 (673)
++..++++|++|+||||++..|.. .++. ..+ . .++..-.. . ..+ ..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 366889999999999999999863 2211 000 0 01100000 0 000 00
Q ss_pred c-CCeEEEEEeCCCCCc--chh-hhh-----hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCC
Q psy4665 160 K-SGEQVTFLDTPGHAA--FSN-MRS-----RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPA 229 (673)
Q Consensus 160 ~-~~~~i~liDTpG~~~--f~~-~~~-----~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~ 229 (673)
. .++.+.|+||||... ... ++. ..+..+|.+++|+|+..+ .+....++.+.. ..| ..+++||+|...
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 1 456799999999766 321 211 234578999999999864 333444444443 477 788999999753
Q ss_pred CcHHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
............ ..|+.+++ +|++++++
T Consensus 254 -~~g~~~~~~~~~---------~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 -KGGGALSAVAAT---------GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -THHHHHHHHHTT---------TCCEEEEE--CSSSTTCE
T ss_pred -chHHHHHHHHHH---------CcCEEEEe--CCCChhhc
Confidence 333333333222 24555555 57777654
No 233
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.82 E-value=7.1e-06 Score=83.25 Aligned_cols=57 Identities=32% Similarity=0.424 Sum_probs=37.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCcc-ccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~~-~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f 176 (673)
.+++++|.+|+|||||+|+|.+... .....+|+|.... .+.. +..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL--ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC--TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe--CCCEEEEECCCcccC
Confidence 6899999999999999999998764 4455677776553 2233 347899999997543
No 234
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.76 E-value=0.0001 Score=78.60 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=118.6
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCC--ChhhHHHHhhcC-Ce-EEEEcCCCCH----------hHHhHHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQV--SATDVELATLFN-AI-IYTFNTTLHP----------AAKTSAEE 533 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~i--t~~Dv~lA~~~~-a~-I~~Fnv~~~~----------~~~~~a~~ 533 (673)
-|+-|-.+=+...+..+....+-+=|++ .-|.. |..-+.++...+ .. |+..|-|++. +++++++.
T Consensus 65 iDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 65 VDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSG 143 (370)
T ss_dssp EECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTT
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 4777765545555555555666777777 65654 333445555544 23 7777733321 12222222
Q ss_pred c---CCeEEE----------echhhHHHHHHHHHHhccCCceeE-EEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeee
Q psy4665 534 L---GVTVKQ----------FNVIYKLVEDVKEEINAMLPHTYA-EEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLK 599 (673)
Q Consensus 534 ~---~V~i~~----------~~iIY~l~~~~~~~~~~~~~~~~~-~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~ 599 (673)
. .++++. ..-|-+|++.+.+++....++... ....-++.|..+|..+ ..+.++..+|.+|.++
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~---~~G~v~~g~v~~G~l~ 220 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVT---GKGCVVLGVVKQGISK 220 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC------CEEEEEEEESEEE
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcC---CCceEEEEEEECCEEe
Confidence 2 477887 556667777776665432111000 0111245577888765 2457888899999999
Q ss_pred eCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 600 KNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 600 ~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
.|..+.+.+.+.. .+|.||+.+.++|+++.+|+.||+.+.+.+. +++.||+|-.
T Consensus 221 ~gd~v~~~p~~~~---~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 221 DKDKTKIFPLDRD---IEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp TTCEEEEETTTEE---EEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred eCCEEEECCCCcE---EEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999999998864 5999999999999999999999999987532 8999999965
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.75 E-value=5e-05 Score=86.33 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCCc-------------chhhhhhcccc-CCeEEEEEECCCCChH-hhHHHHHHHHHcCCCEEEEEecCCC
Q psy4665 163 EQVTFLDTPGHAA-------------FSNMRSRGAHC-TDIVVLVVAADDGVME-QTVESIRMAREAKVPIIVAINKIDK 227 (673)
Q Consensus 163 ~~i~liDTpG~~~-------------f~~~~~~~~~~-aD~~vlVvda~~g~~~-q~~~~l~~~~~~~iP~IvviNK~Dl 227 (673)
..++|+|.||... ...+...++.. ..+++++++++..... .....++.+...+.+.|+|+||+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4589999998422 11222233333 3566677776544332 2344555555567899999999999
Q ss_pred CCC
Q psy4665 228 PAA 230 (673)
Q Consensus 228 ~~~ 230 (673)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 653
No 236
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.75 E-value=0.00018 Score=77.67 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=120.1
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChhhH---HHHhhcCC--eEEEEcC-CC--CH--------hHHhHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDV---ELATLFNA--IIYTFNT-TL--HP--------AAKTSA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~Dv---~lA~~~~a--~I~~Fnv-~~--~~--------~~~~~a 531 (673)
-|+-|-.+-....+..+....+-+=|+++.-|.. +.+. .++...+. +|+..|= .. +. ++++++
T Consensus 80 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 4777765555555566666667777887766643 3332 33433343 4566662 11 11 233445
Q ss_pred HHcC-----CeEEEechhhH-------------------HHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcC
Q psy4665 532 EELG-----VTVKQFNVIYK-------------------LVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKV 586 (673)
Q Consensus 532 ~~~~-----V~i~~~~iIY~-------------------l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~ 586 (673)
+..+ +.++.-+-... -++++.+.+...++ |.....-.-++.|..+|..+ ..+
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~---~~G 235 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT---GRG 235 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEET---TTE
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcC---CCc
Confidence 5544 56665433222 14555555555554 33222233467788899876 356
Q ss_pred cEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCC-CCCCCCCEEE
Q psy4665 587 PVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPS-IEFEPGDTIV 655 (673)
Q Consensus 587 ~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~-~~~~~gD~i~ 655 (673)
.|+..+|.+|++++|..+.+.+.+..-...+|.||+.++++|+++.+|+.||+.+.+.+ .+++.||+|-
T Consensus 236 ~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 236 TVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLA 305 (405)
T ss_dssp EEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEE
T ss_pred eEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEE
Confidence 89999999999999999999987631123599999999999999999999999998652 2999999985
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.73 E-value=1.1e-05 Score=81.87 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=71.6
Q ss_pred CCCCCcch-hhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCcccc
Q psy4665 170 TPGHAAFS-NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVE 247 (673)
Q Consensus 170 TpG~~~f~-~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~ 247 (673)
-|||.... ......+..+|++++|+|+.++........ ..+ ++|.++++||+|+.+... +...+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~----- 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADEKTTKKWVEFFKKQ----- 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCHHHHHHHHHHHHHT-----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCHHHHHHHHHHHHHc-----
Confidence 38986432 344558899999999999998765543221 112 899999999999975311 1122222221
Q ss_pred ccCCceeEEEeeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHH
Q psy4665 248 DLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIV 315 (673)
Q Consensus 248 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~ 315 (673)
..++ ++||+++.|++++++.+.... +. +.+-...|.|-..|++.+.
T Consensus 75 ----g~~v-~iSa~~~~gi~~L~~~l~~~~----------------~~-v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 75 ----GKRV-ITTHKGEPRKVLLKKLSFDRL----------------AR-VLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp ----TCCE-EECCTTSCHHHHHHHHCCCTT----------------CE-EEEEESTTSSHHHHHHHHH
T ss_pred ----CCeE-EEECCCCcCHHHHHHHHHHhh----------------hh-eEEeCCCCCCHHHHHHHHh
Confidence 2356 999999999999887653221 12 2334567889899988875
No 238
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.72 E-value=0.00045 Score=74.32 Aligned_cols=184 Identities=13% Similarity=0.164 Sum_probs=123.6
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCCh--hhHHHHhhcCC--eEEEEcC-CC--CH--------hHHhHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSA--TDVELATLFNA--IIYTFNT-TL--HP--------AAKTSAE 532 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~--~Dv~lA~~~~a--~I~~Fnv-~~--~~--------~~~~~a~ 532 (673)
-|+-|-.+-....+..+....+-+=|+++.-|...+ .-+.++...+- +|+..|= .. ++ +++++++
T Consensus 71 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 488887766666667777677788888887775322 12334444443 4566662 11 11 3344566
Q ss_pred HcC-----CeEEEechhhHH-----------HHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEee
Q psy4665 533 ELG-----VTVKQFNVIYKL-----------VEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSK 595 (673)
Q Consensus 533 ~~~-----V~i~~~~iIY~l-----------~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~ 595 (673)
..+ ++++.-+-.... ++++.+.+...++ |.....-.-.+.|..+|..+ ..++|+..+|.+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~---~~G~v~~g~v~~ 227 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIP---GRGTVVTGTLER 227 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEET---TTEEEEEEECCB
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeC---CceEEEEEEEee
Confidence 655 567765543321 4445555555444 22222223467788889876 356889999999
Q ss_pred CeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEE
Q psy4665 596 GVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIV 655 (673)
Q Consensus 596 G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~ 655 (673)
|.+++|..+.+...+.. ...+|.||+.+.++++++..|+.||+.+.+.+. +++.||+|-
T Consensus 228 G~l~~gd~v~~~~~~~~-~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 228 GILKKGDECEFLGHSKN-IRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp SEEETTCEEEEEETTEE-EEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred ceEeCCCEEEEeCCCCC-eEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEe
Confidence 99999999998886521 235999999999999999999999999986532 899999985
No 239
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.66 E-value=0.00054 Score=59.12 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCC-cceEEEEec--ccccceeccCccccccCcEEEe-eeCCC
Q psy4665 328 GGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQ-AWAKVRSIS--RKTLINTALGTVQRTSGTVKIS-LGFKI 403 (673)
Q Consensus 328 ~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~-~~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i-~gl~~ 403 (673)
..|....|+....--+ |++..++|.+|+|++|+.+ .+. ..++|++|. ++++++|.|||. |++. -|. .
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V-Pg~~~vg~VkSIE~~~e~v~eA~~Gdn------Vai~Ikg~-~ 102 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV-KGPSGIGGIVRIERNREKVEFAIAGDR------IGISIEGK-I 102 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE-ECSSCEEEEEEEEETTEEESEEETTCE------EEEEEESC-C
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc-CCCceEEEEEEEEECCcCcCCcCCCCE------EEEEEECC-c
Confidence 4567777777544445 8899999999999999999 666 568999987 889999999999 8843 332 2
Q ss_pred CCCCCCCCeEee
Q psy4665 404 NPFCPSGDVDGS 415 (673)
Q Consensus 404 ~~~~~~Gd~l~~ 415 (673)
. .+.+||++.+
T Consensus 103 ~-~I~~GdVLyv 113 (116)
T 1xe1_A 103 G-KVKKGDVLEI 113 (116)
T ss_dssp C-CCCTTCEEEE
T ss_pred c-ccCCCcEEEE
Confidence 2 5778999875
No 240
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.63 E-value=0.00055 Score=74.61 Aligned_cols=180 Identities=10% Similarity=0.057 Sum_probs=124.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---------CChhhHHHHhhcCC--eEEEEcCCCCH-----------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---------VSATDVELATLFNA--IIYTFNTTLHP----------- 525 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---------it~~Dv~lA~~~~a--~I~~Fnv~~~~----------- 525 (673)
.|+-|--+=+...+..+....+-+=|+.+.-|. -|..-+.++...+. +|+..| |++.
T Consensus 100 iDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN-K~Dl~~~~~~~~~~~ 178 (439)
T 3j2k_7 100 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN-KMDDPTVNWSNERYE 178 (439)
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEee-cCCCcccchHHHHHH
Confidence 699998777777777777778888899998885 35556666666554 567777 3331
Q ss_pred ----hHHhHHHHcC------CeEEE-----echhhHHHH--------HHHHHHhccCCceeEEEEeEEEEEeeeeEecCC
Q psy4665 526 ----AAKTSAEELG------VTVKQ-----FNVIYKLVE--------DVKEEINAMLPHTYAEEVLGEANVLQMFLITDG 582 (673)
Q Consensus 526 ----~~~~~a~~~~------V~i~~-----~~iIY~l~~--------~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~ 582 (673)
++.+++++.| +.++. ..-|-++.+ .+.+++....+|.....-.-+..|..+|.
T Consensus 179 ~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~---- 254 (439)
T 3j2k_7 179 ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK---- 254 (439)
T ss_pred HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc----
Confidence 2233444444 34432 233445443 24455555444433333334455556653
Q ss_pred CCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 583 KKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 583 ~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
..+.|+..+|.+|.+++|..+.+.+.|.. .+|.||+.++++|+++..|+.||+.|.+.+. +++.||++-.
T Consensus 255 -~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~---~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 255 -DMGTVVLGKLESGSIFKGQQLVMMPNKHN---VEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred -CCCeEEEEEEEeeEEecCCEEEEccCCce---EEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 24689999999999999999999998864 5999999999999999999999999996543 8888999854
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.53 E-value=0.00019 Score=75.09 Aligned_cols=143 Identities=26% Similarity=0.308 Sum_probs=77.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCc------ccc--ccc--cc-e------eeeEEEEEEE-----------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS------VVK--SEF--GG-I------TQHIGAFVVT----------------- 158 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~------~~~--~~~--~g-~------T~~~~~~~v~----------------- 158 (673)
.++..++++|++|+|||||+..|.+.. +.. .+. .+ . ....+...+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345689999999999999999986521 100 000 00 0 0000000000
Q ss_pred -ecCCeEEEEEeCCCCCcchhh----hh--hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCc
Q psy4665 159 -LKSGEQVTFLDTPGHAAFSNM----RS--RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD 231 (673)
Q Consensus 159 -~~~~~~i~liDTpG~~~f~~~----~~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~ 231 (673)
...+..+.++||+|....... .. ..+-.+|-.++++|+..+. +..+.++.+...--..++++||+|.. +.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-AR 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-SC
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-cc
Confidence 002345778999996432211 11 1123478899999988762 33444444443222347888999974 33
Q ss_pred HHHHHHHHHHcCccccccCCceeEEEeeccCCCChhhH
Q psy4665 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269 (673)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 269 (673)
.......+...+ .|+.+++ +|++++++
T Consensus 284 ~G~~l~~~~~~~---------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVID---------APILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHT---------CCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHC---------CCEEEEe--CCCCcccc
Confidence 334444444433 3566666 67777654
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.50 E-value=0.00013 Score=79.30 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=64.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHh-------cCcccc--cc--c-------------cceeeeEEE-----E-----EE-
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLR-------NTSVVK--SE--F-------------GGITQHIGA-----F-----VV- 157 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~-------~~~~~~--~~--~-------------~g~T~~~~~-----~-----~v- 157 (673)
.++.+|+++|++|+||||++..|. +.++.. .. . .++..-... . .+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999986 222210 00 0 011000000 0 00
Q ss_pred Eec-CCeEEEEEeCCCCCcchh-hhh-----hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCC
Q psy4665 158 TLK-SGEQVTFLDTPGHAAFSN-MRS-----RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKP 228 (673)
Q Consensus 158 ~~~-~~~~i~liDTpG~~~f~~-~~~-----~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~ 228 (673)
... .++.+.|+||||...+.. ... ..+..+|.+++|+|+..+. .....++.... ++| .-+++||+|..
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCCC
Confidence 001 456899999999755422 111 1245789999999998762 22333333322 355 34699999975
No 243
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.41 E-value=0.00045 Score=75.25 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=118.4
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC-------CC--ChhhHHHHhhcC--CeEEEEcC-CC-C----------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG-------QV--SATDVELATLFN--AIIYTFNT-TL-H---------- 524 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG-------~i--t~~Dv~lA~~~~--a~I~~Fnv-~~-~---------- 524 (673)
-|+-|..+=....+..+....+-+=|+++.-| .. |..-..+|...+ .+|+..|= .. +
T Consensus 89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 168 (435)
T 1jny_A 89 IDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE 168 (435)
T ss_dssp CCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred EECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence 47777766666666666666777777777665 21 222233444434 35666662 11 1
Q ss_pred --HhHHhHHHHcC-----CeEEEech-----hhHHHH--------HHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCC
Q psy4665 525 --PAAKTSAEELG-----VTVKQFNV-----IYKLVE--------DVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKK 584 (673)
Q Consensus 525 --~~~~~~a~~~~-----V~i~~~~i-----IY~l~~--------~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~ 584 (673)
.+++++++..+ +.++.-+- |-++.+ .+.+.+....+|.....-.-++.|..+|..+ .
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~---~ 245 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSIS---G 245 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEET---T
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEeC---C
Confidence 22445555555 45554321 211111 2333345444444322222355688899886 3
Q ss_pred cCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 585 KVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 585 ~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
.+.++..+|.+|++++|..+.+.+.+.. .+|.||+.++++|+++.+|+.||+.+.+.+. +++.||+|-.
T Consensus 246 ~G~v~~g~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~ 315 (435)
T 1jny_A 246 VGTVPVGRVESGVLKVGDKIVFMPAGKV---GEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGH 315 (435)
T ss_dssp TEEEEEEECCBSCEETTCEEEEETTTEE---EEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEEC
T ss_pred CcEEEEEEEecCeEEcCCEEEECCceeE---EEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecC
Confidence 4689999999999999999999998854 5999999999999999999999999986432 8999999963
No 244
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.37 E-value=0.0018 Score=77.26 Aligned_cols=184 Identities=13% Similarity=0.162 Sum_probs=125.2
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCChh--hHHHHhhcCC--eEEEEcC-CCC--H--------hHHhHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSAT--DVELATLFNA--IIYTFNT-TLH--P--------AAKTSAE 532 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~~--Dv~lA~~~~a--~I~~Fnv-~~~--~--------~~~~~a~ 532 (673)
-|+-|-.+=+...+..+....+-+=|+++.-|...+. -+.++...+. +|+..|= ... . +++++++
T Consensus 364 IDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp EECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 4899987766677777777778888888877753322 2334444443 4666662 221 1 2344555
Q ss_pred HcC-----CeEEEechh---------hHHHHHHHHHHhccCC-ceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCe
Q psy4665 533 ELG-----VTVKQFNVI---------YKLVEDVKEEINAMLP-HTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGV 597 (673)
Q Consensus 533 ~~~-----V~i~~~~iI---------Y~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~ 597 (673)
..| ++++.-+-. |+=++++.+.+...++ |.....-.-.+.|..+|.++ ..++|+..+|.+|+
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~---G~GtVvtGrV~sGt 520 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS---GRGTVVTGRVERGI 520 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEET---TTEEEEEEECCBSE
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeecccccccc---CCcEEEEEEEeccE
Confidence 555 566654433 2335555555555554 22222223456788899876 35689999999999
Q ss_pred eeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEEE
Q psy4665 598 LKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTIV 655 (673)
Q Consensus 598 ~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i~ 655 (673)
+++|..+.+...+.. ...+|.||+.+.++|+++..|+.||+.+.+.+. +++.||+|-
T Consensus 521 LkvGD~V~I~ps~~~-~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 521 IKVGEEVEIVGIKET-QKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp EETTCEEEEESSSSC-EEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EecCCEEEEecCCCc-eeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 999999999986621 135999999999999999999999999987532 999999985
No 245
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.32 E-value=0.00065 Score=74.65 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=111.5
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC---------CCChhhHHHHhhcCC--eEEEEcC-CCC-----H-----
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG---------QVSATDVELATLFNA--IIYTFNT-TLH-----P----- 525 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG---------~it~~Dv~lA~~~~a--~I~~Fnv-~~~-----~----- 525 (673)
.|+-|-.+=....+..+....+-+=|+++.-| +-|..-+.++...+. +|+..|= ... +
T Consensus 126 iDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~ 205 (467)
T 1r5b_A 126 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 205 (467)
T ss_dssp CCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHH
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHH
Confidence 57777655445555556667778888888777 345666667766654 5677772 111 1
Q ss_pred ---hHHhHHHHc-C------CeEEEe-----chhhHHHH----------HHHHHHhccCCceeEEEEeEEEEEeeeeEec
Q psy4665 526 ---AAKTSAEEL-G------VTVKQF-----NVIYKLVE----------DVKEEINAMLPHTYAEEVLGEANVLQMFLIT 580 (673)
Q Consensus 526 ---~~~~~a~~~-~------V~i~~~-----~iIY~l~~----------~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~ 580 (673)
++.++++.. | +.++.- .-|.++++ .+.+.+....+|.....-.-++.|..+|.
T Consensus 206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~-- 283 (467)
T 1r5b_A 206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK-- 283 (467)
T ss_dssp HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE--
T ss_pred HHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe--
Confidence 245566555 4 334431 12222221 12233443333322222233556666664
Q ss_pred CCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccc-ccccccccccceeEEEEcC-CCCCCCCCCEEEE
Q psy4665 581 DGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL-KEEVTSIKKELECGLRLED-PSIEFEPGDTIVC 656 (673)
Q Consensus 581 ~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~-k~~v~~~~~g~ecgi~~~~-~~~~~~~gD~i~~ 656 (673)
+ .+.|+..+|.+|++++|..+.+...++. ++|.||+.+ +++++++..|+.||+.+.+ .. +++.||+|-.
T Consensus 284 -~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~-~i~rG~vl~~ 354 (467)
T 1r5b_A 284 -D--LGTILEGKIEAGSIKKNSNVLVMPINQT---LEVTAIYDEADEEISSSICGDQVRLRVRGDDS-DVQTGYVLTS 354 (467)
T ss_dssp -S--SSEEEEEECCBSEEETTEEEEEETTTEE---EEEEEEECTTCCEESEEETTCEEEEEEESCCT-TCCTTCEEEC
T ss_pred -C--CCeEEEEEEeeeEEeeCCEEEEccCCee---EEEEEEeccCCcEeeEEcCCCEEEEEEeccHh-hCCceEEEeC
Confidence 1 3578999999999999999999998854 599999998 9999999999999999996 45 9999999864
No 246
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.30 E-value=0.00022 Score=77.48 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+.-.|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567999999999999999999853
No 247
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.30 E-value=0.0004 Score=75.65 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=112.1
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCCh--hhHHHHhhcCC--eEEEEcCC-CC---H--------hHHhHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSA--TDVELATLFNA--IIYTFNTT-LH---P--------AAKTSA 531 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it~--~Dv~lA~~~~a--~I~~Fnv~-~~---~--------~~~~~a 531 (673)
.|+-|--+=....+..+....+-+=|+++.-|...+ .-+.++...+. +|+..|=- .. + ++.+++
T Consensus 109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~ 188 (434)
T 1zun_B 109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFA 188 (434)
T ss_dssp EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence 477775443444445555566777788877664322 22344555442 67777731 11 1 122344
Q ss_pred HHcC-----CeEEEec-----hhhHHHHH--------HHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEE
Q psy4665 532 EELG-----VTVKQFN-----VIYKLVED--------VKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRC 593 (673)
Q Consensus 532 ~~~~-----V~i~~~~-----iIY~l~~~--------~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V 593 (673)
+..+ +.++.-+ -|-++++. +.++++...+|.....-.-++.|..+|..+ ..+..++.+|
T Consensus 189 ~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~---~~~~g~~G~v 265 (434)
T 1zun_B 189 EGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPN---LNFRGFAGTL 265 (434)
T ss_dssp HTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSS---SSCCEEEEEC
T ss_pred HHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccC---CCceEEEEEE
Confidence 5556 5555433 22221111 223333332332222222345555666543 1234567799
Q ss_pred eeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCCCCCCCCEEEE
Q psy4665 594 SKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVC 656 (673)
Q Consensus 594 ~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~ 656 (673)
.+|++++|..+.+...|+ ..+|.||+.++.+++++.+|+.|++.+.+-. +++.||+|-.
T Consensus 266 ~~G~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~a~aG~~v~~~l~~~~-~i~~G~~l~~ 324 (434)
T 1zun_B 266 ASGIVHKGDEIVVLPSGK---SSRVKSIVTFEGELEQAGPGQAVTLTMEDEI-DISRGDLLVH 324 (434)
T ss_dssp CBSCEETTCEEEETTTCC---EEEEEEEEETTEEESEECTTCEEEEEESSCC-CCCTTCEEEE
T ss_pred ecceEeCCCEEEEecCCe---EEEEEEEEEcCcceeEecCCCEEEEEeCCcc-ccCCccEEEC
Confidence 999999999999999885 3699999999999999999999999999855 8999999964
No 248
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.21 E-value=0.00088 Score=65.02 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=66.2
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~ 649 (673)
+-|..+|. . .+.|+.-+|..|.++.|..+.++..|.. .+|+||+.++++++++..|+.+|+.|.+.+. |+.
T Consensus 9 l~v~~v~~-g----~G~v~~G~v~~G~i~~Gd~v~i~P~~~~---~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~ 80 (204)
T 3e1y_E 9 LPIVDKYK-D----MGTVVLGKLESGSICKGQQLVMMPNKHN---VEVLGILSDDVETDTVAPGENLKIRLKGIEEEEIL 80 (204)
T ss_dssp EEEEEEEE-S----SSEEEEEECCBSCEESSCCEEETTTTEE---EEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCC
T ss_pred EEEEEEEc-C----CCEEEEEEEecCEEECCCEEEECCCCCE---EEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCc
Confidence 34566665 2 4679999999999999999999998854 6999999999999999999999999995432 899
Q ss_pred CCCEEEE
Q psy4665 650 PGDTIVC 656 (673)
Q Consensus 650 ~gD~i~~ 656 (673)
.||++-.
T Consensus 81 rG~vl~~ 87 (204)
T 3e1y_E 81 PGFILCD 87 (204)
T ss_dssp TTCEEBC
T ss_pred cceEEEC
Confidence 9999864
No 249
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.15 E-value=0.0013 Score=63.26 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHc-----CCCEEEEEecCCCCCCcHHHH
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA-----KVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~-----~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+.+.+.++|||+.. .......+..+|.+++++..+... ......++.+... +.++.+++|++|.........
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 34679999999875 233344667899999999998877 7777777777754 467899999999654344455
Q ss_pred HHHHHHcC
Q psy4665 236 KNMLLAQG 243 (673)
Q Consensus 236 ~~~l~~~~ 243 (673)
.+.+.+.+
T Consensus 151 ~~~l~~~~ 158 (206)
T 4dzz_A 151 KESIKDTG 158 (206)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 55565544
No 250
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.11 E-value=0.001 Score=72.86 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccc
Q psy4665 546 KLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLK 625 (673)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k 625 (673)
.|++.+. ...+|.....-.-++.|..+|.++ ..+.|+..+|.+|.++.|..+.++..+.. .+|.||+.++
T Consensus 225 ~Ll~~l~----~~~~p~~~~~~p~r~~i~~v~~~~---g~G~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~ 294 (458)
T 1f60_A 225 TLLEAID----AIEQPSRPTDKPLRLPLQDVYKIG---GIGTVPVGRVETGVIKPGMVVTFAPAGVT---TEVKSVEMHH 294 (458)
T ss_dssp SHHHHHH----TSCCCCCCTTSCCEEEEEEEEEET---TTEEEEEEECCBSCBCTTCEEEEETTTEE---EEEEEEEETT
T ss_pred HHHHHhh----ccCCCcccCCCCcEEEEEEEEEeC---CCcEEEEEEEeCCeEcCCCEEEECCCCce---EEEeEEEECC
Confidence 4555433 344554434445677888999987 34678889999999999999999998864 5999999999
Q ss_pred cccccccccceeEEEEcCCC-CCCCCCCEEEE
Q psy4665 626 EEVTSIKKELECGLRLEDPS-IEFEPGDTIVC 656 (673)
Q Consensus 626 ~~v~~~~~g~ecgi~~~~~~-~~~~~gD~i~~ 656 (673)
+++.++..|+.|||.+.+.+ .+++.||+|-.
T Consensus 295 ~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 295 EQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp EECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred eEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 99999999999999998753 29999999965
No 251
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=0.0005 Score=71.05 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=72.4
Q ss_pred hccccCCeEEEEEECCCCChHhh--HHHHHHHHHcCCCEEEEEecCCCCCCcH--HHHHHHHHHcCccccccCCceeEEE
Q psy4665 182 RGAHCTDIVVLVVAADDGVMEQT--VESIRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLAQGITVEDLGGDIQAVP 257 (673)
Q Consensus 182 ~~~~~aD~~vlVvda~~g~~~q~--~~~l~~~~~~~iP~IvviNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~~v~ 257 (673)
..+..+|.+++|+|+.++..... .+.+..+...++|.++|+||+|+.+... +...+....+ ... ..+++.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----~~~--g~~v~~ 155 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RNI--GYDVYL 155 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HHH--TCCEEE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH----HhC--CCeEEE
Confidence 46789999999999997655443 2334444567999999999999976432 1122222221 111 247899
Q ss_pred eeccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 258 ISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 258 iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
+||.++.|+++|++... + ..+.+-..+|.|-..|++.|..
T Consensus 156 ~sa~~~~g~~~L~~~~~-----------------G--~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHFQ-----------------D--KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CCHHHHTTCTTTGGGGT-----------------T--SEEEEEESHHHHHHHHHHHHCC
T ss_pred EecCCCCCHHHHHhhcC-----------------C--CEEEEECCCCCCHHHHHHHhcc
Confidence 99999999988765431 1 1224445677888899988753
No 252
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.04 E-value=0.0079 Score=64.74 Aligned_cols=185 Identities=13% Similarity=0.077 Sum_probs=113.9
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCCCC---hhhHHHHhhcC--CeEEEEcC-CCC---------HhHHhHHH
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVS---ATDVELATLFN--AIIYTFNT-TLH---------PAAKTSAE 532 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~it---~~Dv~lA~~~~--a~I~~Fnv-~~~---------~~~~~~a~ 532 (673)
-|+-|-.+=....+..+....+-+=|+++.-|... ..-+.++...+ .+|+..|= ... .+++++++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 37777655555555555555667777777655322 23333444433 36677772 111 11233333
Q ss_pred H---cCCeEEEec-----hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecC-CC----CcCcEEeEEEeeCeee
Q psy4665 533 E---LGVTVKQFN-----VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITD-GK----KKVPVAGCRCSKGVLK 599 (673)
Q Consensus 533 ~---~~V~i~~~~-----iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~-~~----~~~~iaG~~V~~G~~~ 599 (673)
. .+++++.-+ -|-.|++.+.+.+. +|.....-.-++.|...|.++. |. -.+.|+..+|.+|.++
T Consensus 166 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~---~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 166 GTIAENAPIIPISAHHEANIDVLLKAIQDFIP---TPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp TSTTTTCCEEEC------CHHHHHHHHHHHSC---CCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred hcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC---CCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 2 356665533 34555555554332 2222222234667888887752 11 1356888899999999
Q ss_pred eCCeEEEeeCCE------EEE---EEeeecccccccccccccccceeEEEEcCC---C-CCCCCCCEEE
Q psy4665 600 KNALFKLVRRNE------VLF---EGKLESMKHLKEEVTSIKKELECGLRLEDP---S-IEFEPGDTIV 655 (673)
Q Consensus 600 ~~~~~~v~r~~~------~i~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~---~-~~~~~gD~i~ 655 (673)
+|..+.+...++ ..| ..+|.||+.++++|++|.+|+.||+.+... . .+++.||++-
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 999999887432 222 479999999999999999999999988621 1 1888999874
No 253
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.98 E-value=0.004 Score=68.62 Aligned_cols=185 Identities=11% Similarity=0.093 Sum_probs=113.2
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC---------CChhhHHHHhhcC--CeEEEEcCC-C-C--H-------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ---------VSATDVELATLFN--AIIYTFNTT-L-H--P------- 525 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~---------it~~Dv~lA~~~~--a~I~~Fnv~-~-~--~------- 525 (673)
.|+-|--+-....+..+....+-+=|+.+.-|. -+..-..++...+ .+|+..|=- . + .
T Consensus 116 iDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 195 (483)
T 3p26_A 116 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK 195 (483)
T ss_dssp ECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHH
Confidence 677777555566666666677778888877663 2223334444444 367777731 1 1 1
Q ss_pred -hHHhHHHHc-----CCeEEEec-----------------------hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeee
Q psy4665 526 -AAKTSAEEL-----GVTVKQFN-----------------------VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQM 576 (673)
Q Consensus 526 -~~~~~a~~~-----~V~i~~~~-----------------------iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~ 576 (673)
.+.++++.. ++.++.-+ -+.++++.+-..+...- |.......-++.|..+
T Consensus 196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~-p~~~~~~p~r~~v~~v 274 (483)
T 3p26_A 196 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN-EGINKDDPFLFSVLEI 274 (483)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHH-TTCCSSSCCEEEEEEE
T ss_pred HHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccc-ccccCCCceEEEEEEE
Confidence 111222222 34444322 13334444432222110 1111222345667778
Q ss_pred eEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccc--------ccccccccccceeEEEEcCCCC-C
Q psy4665 577 FLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL--------KEEVTSIKKELECGLRLEDPSI-E 647 (673)
Q Consensus 577 f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~--------k~~v~~~~~g~ecgi~~~~~~~-~ 647 (673)
|........+.|+..+|.+|.+++|..+.+.+.|.. .+|+||+.+ +++|+++..|+.|||.+.+.+. |
T Consensus 275 ~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~d 351 (483)
T 3p26_A 275 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS---CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPED 351 (483)
T ss_dssp EC---CCSCCEEEEEEEEESEECTTCEEEEETTTEE---EEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGG
T ss_pred EccCCcCCCceEEEEEEecceEccCCEEEEeCCCCe---EEEEEEEEcCccccccccccccEECCCCEEEEEEEeccccc
Confidence 876510124689999999999999999999999875 599999998 4999999999999999998632 9
Q ss_pred CCCCCEEEE
Q psy4665 648 FEPGDTIVC 656 (673)
Q Consensus 648 ~~~gD~i~~ 656 (673)
++.||+|-.
T Consensus 352 i~rG~vl~~ 360 (483)
T 3p26_A 352 IQNGDLAAS 360 (483)
T ss_dssp CCTTCEEEC
T ss_pred CCceEEEEc
Confidence 999999864
No 254
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.95 E-value=0.0016 Score=73.65 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccccc
Q psy4665 546 KLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLK 625 (673)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~k 625 (673)
.|++.+ ...++|.....-.-++.|..+|.. + .+.++..+|.+|++++|..+.+++.|.. .+|.||+.++
T Consensus 386 ~Lle~l----~~~~pp~~~~~~p~r~~v~~v~~~--~--~g~v~~G~v~~G~l~~Gd~v~i~p~~~~---~~V~~i~~~~ 454 (592)
T 3mca_A 386 TLLSAL----DQLVPPEKPYRKPLRLSIDDVYRS--P--RSVTVTGRVEAGNVQVNQVLYDVSSQED---AYVKNVIRNS 454 (592)
T ss_dssp CHHHHH----HTSCCCSCTTTSCCEEEEEEEEEE--T--TEEEEEEEEEESEEETTCEEEETTTTEE---EEEEEEECSS
T ss_pred HHHHHH----HhhccccccccccchheeeEEEec--C--CeEEEEEEEeeeeEccCCEEEEccCCce---EEEEEEEEcC
Confidence 455544 334444332223346677888887 2 3578899999999999999999998874 5999999999
Q ss_pred cccc-cccccceeEEEEcCCCC-CCCCCCEEEE
Q psy4665 626 EEVT-SIKKELECGLRLEDPSI-EFEPGDTIVC 656 (673)
Q Consensus 626 ~~v~-~~~~g~ecgi~~~~~~~-~~~~gD~i~~ 656 (673)
++|. ++..|+.||+.|.+.+. +++.||+|-.
T Consensus 455 ~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~ 487 (592)
T 3mca_A 455 DPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487 (592)
T ss_dssp SCSCCEEETTCEEEEEESSSCGGGCCTTCEEEC
T ss_pred ccCcceecCCCEEEEEEccccccccceEEEecc
Confidence 9999 99999999999998553 8999999863
No 255
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.79 E-value=0.0024 Score=69.75 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC------cccc--ccc-cc----------eeeeEEEEEEE---------------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT------SVVK--SEF-GG----------ITQHIGAFVVT--------------- 158 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~------~~~~--~~~-~g----------~T~~~~~~~v~--------------- 158 (673)
.+.-.++|+|.+|+|||||+..|.+. .+.. ... +. .-..+....-.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34568999999999999999998542 1111 000 00 00001100000
Q ss_pred -ecCCeEEEEEeCCCCCcchhh-h------hhcc-----ccCCeEEEEEECCCCChHhhHHHHHHHHH-cCCCEEEEEec
Q psy4665 159 -LKSGEQVTFLDTPGHAAFSNM-R------SRGA-----HCTDIVVLVVAADDGVMEQTVESIRMARE-AKVPIIVAINK 224 (673)
Q Consensus 159 -~~~~~~i~liDTpG~~~f~~~-~------~~~~-----~~aD~~vlVvda~~g~~~q~~~~l~~~~~-~~iP~IvviNK 224 (673)
...+..+.|+||+|....... + .+.+ ...+-++||+|+..|. .....++.+.. .++. .+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~it-gvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLT-GITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCS-EEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCC-EEEEEc
Confidence 013456889999996432211 1 1111 2356789999998762 22333443332 3444 568999
Q ss_pred CCCCCCcHHHHHHHHHHc
Q psy4665 225 IDKPAADIERTKNMLLAQ 242 (673)
Q Consensus 225 ~Dl~~~~~~~~~~~l~~~ 242 (673)
+|-. ...-.....+...
T Consensus 448 LD~t-akgG~~lsi~~~~ 464 (503)
T 2yhs_A 448 LDGT-AKGGVIFSVADQF 464 (503)
T ss_dssp GGGC-SCCTHHHHHHHHH
T ss_pred CCCc-ccccHHHHHHHHH
Confidence 9963 2333344444443
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.74 E-value=0.0035 Score=65.97 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=68.2
Q ss_pred ccccCCeEEEEEECCCCChHh--hHHHHHHHHHcCCCEEEEEecCCCCCCcH-HHHHHHHHHcCccccccCCceeEEEee
Q psy4665 183 GAHCTDIVVLVVAADDGVMEQ--TVESIRMAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDIQAVPIS 259 (673)
Q Consensus 183 ~~~~aD~~vlVvda~~g~~~q--~~~~l~~~~~~~iP~IvviNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~v~iS 259 (673)
.+..+|.+++|.+. .+.... ..+.+..+...++|.++|+||+|+.+... +...+.+..+ ... .++++++|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y----~~~--G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY----RNI--GYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHH----HTT--TCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHH----HhC--CCcEEEEe
Confidence 46889999987554 433221 12333444567999999999999975322 1122222221 111 34689999
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhCCCCcccccCCceeeeeccccCCCcchhHHHHHH
Q psy4665 260 ALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVA 316 (673)
Q Consensus 260 A~~g~gv~~l~~~i~~~~~~~~~~~~~~ee~~~~~~v~~~Sa~~g~gl~~Ll~~i~~ 316 (673)
|.++.|++++...+. | ..+.+-..+|.|-..|++.|..
T Consensus 200 a~~~~gl~~L~~~~~---------G----------~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 200 SHTQDGLKPLEEALT---------G----------RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTTTBTHHHHHHHHT---------T----------SEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCcCHHHHHHhcC---------C----------CEEEEECCCCccHHHHHHHHhc
Confidence 999999988776431 1 1224556788999999998853
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.70 E-value=0.0023 Score=66.56 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCCcchhhh----h---hc-----cccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSNMR----S---RG-----AHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDK 227 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~----~---~~-----~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl 227 (673)
.++.+.|+||||........ . +. ...+|.+++|+|+..+ ......++.... ..+ .=+++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 45679999999965432111 0 01 1347899999999854 223333332221 233 3578999997
Q ss_pred CCCcHHHHHHHHHHc
Q psy4665 228 PAADIERTKNMLLAQ 242 (673)
Q Consensus 228 ~~~~~~~~~~~l~~~ 242 (673)
.. ....+.......
T Consensus 267 ~~-~~g~~~~~~~~~ 280 (320)
T 1zu4_A 267 TS-KGGIGLAIKELL 280 (320)
T ss_dssp CS-CTTHHHHHHHHH
T ss_pred CC-chhHHHHHHHHH
Confidence 43 223444444443
No 258
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0068 Score=68.68 Aligned_cols=186 Identities=11% Similarity=0.096 Sum_probs=123.0
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecC---------CCChhhHHHHhhcC-C-eEEEEcCC-CCH----------
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVG---------QVSATDVELATLFN-A-IIYTFNTT-LHP---------- 525 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG---------~it~~Dv~lA~~~~-a-~I~~Fnv~-~~~---------- 525 (673)
.|+-|--+-+...+..+....+-+-|+.+.-| +-|..-+.++...+ . +|+..|=- ...
T Consensus 250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~ 329 (611)
T 3izq_1 250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK 329 (611)
T ss_dssp EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHH
T ss_pred EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHH
Confidence 68888866677777777778888889988765 34444555666555 2 67777742 111
Q ss_pred -hHHhHHHHc-----CCeEEEec-----hhhHHHH-----------HHHHHHhccCC------ceeEEEEeEEEEEeeee
Q psy4665 526 -AAKTSAEEL-----GVTVKQFN-----VIYKLVE-----------DVKEEINAMLP------HTYAEEVLGEANVLQMF 577 (673)
Q Consensus 526 -~~~~~a~~~-----~V~i~~~~-----iIY~l~~-----------~~~~~~~~~~~------~~~~~~~~g~a~v~~~f 577 (673)
.+..+++.. ++.++.-+ -|-+|.+ .+.+++....+ |.......-+..|..+|
T Consensus 330 ~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~ 409 (611)
T 3izq_1 330 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEII 409 (611)
T ss_dssp HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEE
T ss_pred HHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeee
Confidence 112223333 34555433 2222211 23444444421 12222233566777888
Q ss_pred EecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccccc--------ccccccccccceeEEEEcCCCC-CC
Q psy4665 578 LITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL--------KEEVTSIKKELECGLRLEDPSI-EF 648 (673)
Q Consensus 578 ~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~~--------k~~v~~~~~g~ecgi~~~~~~~-~~ 648 (673)
.++.....++|+..+|.+|++++|..+.+.+.|.. .+|.||+.+ +++|.++.+|+.|||.+.+.+. ++
T Consensus 410 ~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~---~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di 486 (611)
T 3izq_1 410 PSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS---CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDI 486 (611)
T ss_dssp CCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEE---EEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSC
T ss_pred ccCccCCCeeEEEEEEEeceeccCCEEEEecCCce---EEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhC
Confidence 76410024689999999999999999999999875 589999988 4899999999999999998632 99
Q ss_pred CCCCEEEE
Q psy4665 649 EPGDTIVC 656 (673)
Q Consensus 649 ~~gD~i~~ 656 (673)
..||+|-.
T Consensus 487 ~rGdvl~~ 494 (611)
T 3izq_1 487 QNGDLAAS 494 (611)
T ss_dssp CTTCEEBC
T ss_pred cceEEccC
Confidence 99999863
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.00089 Score=68.94 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC-------ccc--cccc---------------cceeeeEEE------EEE-EecC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT-------SVV--KSEF---------------GGITQHIGA------FVV-TLKS 161 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~-------~~~--~~~~---------------~g~T~~~~~------~~v-~~~~ 161 (673)
.+..+++++|++|+||||++..|... ++. ..+. .+....... ..+ .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 35678999999999999999988532 110 0000 000000000 000 01 3
Q ss_pred CeEEEEEeCCCCCcchhh-h---hhcc--ccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNM-R---SRGA--HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~-~---~~~~--~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~~ 235 (673)
+..+.|+||||....... + ...+ ...|.+++|+|++.+.. ...+..+.+...+. .-+++||+|... ....+
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~~-~~g~~ 258 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDETT-SLGSV 258 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTCS-CCHHH
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCccc-chhHH
Confidence 457999999997654321 1 1122 23677899999886521 11222222222222 345669999753 23344
Q ss_pred HHHHHHc
Q psy4665 236 KNMLLAQ 242 (673)
Q Consensus 236 ~~~l~~~ 242 (673)
...+...
T Consensus 259 ~~~~~~~ 265 (296)
T 2px0_A 259 FNILAES 265 (296)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 4444433
No 260
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.64 E-value=0.0021 Score=62.51 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCC-CcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHc-CCCEEEEEecCCCCC-CcHHHHHH
Q psy4665 161 SGEQVTFLDTPGH-AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA-KVPIIVAINKIDKPA-ADIERTKN 237 (673)
Q Consensus 161 ~~~~i~liDTpG~-~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~-~iP~IvviNK~Dl~~-~~~~~~~~ 237 (673)
..+.+.++|||+. ... .....+..+|.+++++.++..........++.+... +.++.+++|++|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 3467999999986 433 223366789999999988765555666677777663 778999999999764 34445555
Q ss_pred HHHHc
Q psy4665 238 MLLAQ 242 (673)
Q Consensus 238 ~l~~~ 242 (673)
.+++.
T Consensus 144 ~l~~~ 148 (209)
T 3cwq_A 144 LLTTA 148 (209)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55543
No 261
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.64 E-value=0.0058 Score=65.81 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecC-C----CCcCcEEeEEEeeCeeeeCCeEEEeeCC------EEE
Q psy4665 545 YKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITD-G----KKKVPVAGCRCSKGVLKKNALFKLVRRN------EVL 613 (673)
Q Consensus 545 Y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~-~----~~~~~iaG~~V~~G~~~~~~~~~v~r~~------~~i 613 (673)
-.|++.+.+.+. +|.....-.-++.|...|.++. | .-.+.|+..+|.+|.++.|..+.+.+.+ +..
T Consensus 188 ~~L~~~l~~~~~---~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~ 264 (410)
T 1kk1_A 188 DVLVKAIEDFIP---TPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIK 264 (410)
T ss_dssp HHHHHHHHHHSC---CCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHhCC---CCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccc
Confidence 456665554332 2222222234567778887641 1 1135688899999999999999987643 333
Q ss_pred E---EEeeecccccccccccccccceeEEEEcC---CC-CCCCCCCEEE
Q psy4665 614 F---EGKLESMKHLKEEVTSIKKELECGLRLED---PS-IEFEPGDTIV 655 (673)
Q Consensus 614 ~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~~---~~-~~~~~gD~i~ 655 (673)
| .++|.||+.++++|+++.+|+.||+.+.. .. .|+..||++-
T Consensus 265 ~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 265 YEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp EEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred cccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 3 57999999999999999999999998862 11 2888999874
No 262
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.61 E-value=0.0035 Score=67.39 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecC-C----CCcCcEEeEEEeeCeeeeCCeEEEeeCCEE------
Q psy4665 544 IYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITD-G----KKKVPVAGCRCSKGVLKKNALFKLVRRNEV------ 612 (673)
Q Consensus 544 IY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~-~----~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~------ 612 (673)
|-.|++.+.+.+. +|.....-.-.+.|...|.+.. | ...+.|+..+|.+|.+++|..+.+.+.+++
T Consensus 179 i~~L~~~l~~~l~---~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~ 255 (403)
T 3sjy_A 179 IDSLIEGIEEYIK---TPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKV 255 (403)
T ss_dssp HHHHHHHHHHHSC---CCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEE
T ss_pred hHHHHHHHHHhCC---CCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCccccccccc
Confidence 3466665555442 2222222234566777887652 0 114679999999999999999999876542
Q ss_pred EE---EEeeecccccccccccccccceeEEEEcC-----CCCCCCCCCEEEE
Q psy4665 613 LF---EGKLESMKHLKEEVTSIKKELECGLRLED-----PSIEFEPGDTIVC 656 (673)
Q Consensus 613 i~---~g~i~sl~~~k~~v~~~~~g~ecgi~~~~-----~~~~~~~gD~i~~ 656 (673)
.| ..+|.||+.++++|+++.+|+.||+.+.. -. |+..||++-.
T Consensus 256 ~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~-d~~~G~vl~~ 306 (403)
T 3sjy_A 256 SYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKA-DNLLGSIITL 306 (403)
T ss_dssp EEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGG-GTTTTCEEEE
T ss_pred ccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchh-hhccccEEeC
Confidence 22 46999999999999999999999998852 12 8899999853
No 263
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.58 E-value=0.0018 Score=71.42 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=119.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcC-CeEEEEcC-CC-CHh--------HHhHHHHc
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFN-AIIYTFNT-TL-HPA--------AKTSAEEL 534 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~-a~I~~Fnv-~~-~~~--------~~~~a~~~ 534 (673)
-|+-|--+=....+..+....+-+=|+++.-|. -|..-+.++...+ ..|+..|= .. +++ +.+.++..
T Consensus 78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 588887665666667677677788888876553 2333444555443 35677772 22 111 22334343
Q ss_pred ----CCeEEEec-----hhhHHHHHHHHHHhccCCc-eeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeE
Q psy4665 535 ----GVTVKQFN-----VIYKLVEDVKEEINAMLPH-TYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALF 604 (673)
Q Consensus 535 ----~V~i~~~~-----iIY~l~~~~~~~~~~~~~~-~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~ 604 (673)
+++++.-+ -|-+|++.+.+.+.- ++ .....-.-+..|..+|.++ ..++|+..+|.+|.+++|..+
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~--~~~~~~~~~~~~~~v~~v~~~~---g~G~v~~g~v~~G~l~~gd~v 232 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNN--AEIIRNTESYFKMPLDHAFPIK---GAGTVVTGTINKGIVKVGDEL 232 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH--SCCCCCSSSCCBCBCSCEECCS---SCCCEECCCCCBSCCCSSEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhcC--ccccccccccccccceeEEEec---CCceEEEEEEEEeEEeeCCEE
Confidence 56666543 466777777776641 10 1111111233466777765 356788889999999999999
Q ss_pred EEeeCCEEEEEEeeecccccccccccccccceeEEEEcCCCC-CCCCCCEE
Q psy4665 605 KLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI-EFEPGDTI 654 (673)
Q Consensus 605 ~v~r~~~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~~~~~~~-~~~~gD~i 654 (673)
.++..+.. .+|.||+.+.++++++..|+.||+.+.+.+. +++.||+|
T Consensus 233 ~~~p~~~~---~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 233 KVLPINMS---TKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp CCTTTCCC---EEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred EECCCCcE---EEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 88887753 5999999999999999999999999988654 78999999
No 264
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.57 E-value=0.0012 Score=71.12 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCCcchh-hhh-----hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSN-MRS-----RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKP 228 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~-~~~-----~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~ 228 (673)
.++.+.|+||||...... ... ..+..+|.+++|+|+..+ ......++.... .++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 456799999999643321 111 122358999999999865 222333333322 244 56789999974
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.0032 Score=64.99 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..++++|++|+||||++..|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 455799999999999999998854
No 266
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.46 E-value=0.0044 Score=63.96 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..++++|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999863
No 267
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.12 E-value=0.0094 Score=61.29 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHH----cCCCEE-EEEecCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE----AKVPII-VAINKIDK 227 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~----~~iP~I-vviNK~Dl 227 (673)
.+.+.++|||+....... ...+..+|.+++|+.++..........++.+.. .+++++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 467899999986443322 235678999999998775444455555666654 345654 89999984
No 268
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.91 E-value=0.0049 Score=63.54 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~ 136 (673)
...++++|++|+|||||+|.|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 269
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.85 E-value=0.0072 Score=62.07 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCCcch--hhhh----hccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCCCcHHH
Q psy4665 162 GEQVTFLDTPGHAAFS--NMRS----RGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIER 234 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~--~~~~----~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~~~~~~ 234 (673)
++.+.|+||||..... .+.. .....+|.+++|+|+..+ ....+.++.... ..+ .-+++||+|... ....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g~ 255 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGGA 255 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHHH
Confidence 4579999999864331 1111 111358889999998753 233333333332 234 457899999753 3334
Q ss_pred HHHHHHHc
Q psy4665 235 TKNMLLAQ 242 (673)
Q Consensus 235 ~~~~l~~~ 242 (673)
........
T Consensus 256 ~~~~~~~~ 263 (295)
T 1ls1_A 256 ALSARHVT 263 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.62 E-value=0.0057 Score=64.37 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-.++|+|++|+|||||+|.|.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3579999999999999999998754
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.56 E-value=0.0032 Score=64.97 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
...++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4589999999999999999998753
No 272
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.30 E-value=0.0025 Score=70.02 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcCccccccccce-eeeEEE--EEEEecCC-eEEEEEeCCCCCcc--hhhh------
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI-TQHIGA--FVVTLKSG-EQVTFLDTPGHAAF--SNMR------ 180 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~-T~~~~~--~~v~~~~~-~~i~liDTpG~~~f--~~~~------ 180 (673)
..+.+|.++|.+|+||||+..+|...... .++ |..+.. .......+ ....++|+.|.+.| ...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~----~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF----IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc----cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999754211 111 111000 00000011 22347888887433 2222
Q ss_pred --hhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCC
Q psy4665 181 --SRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID 226 (673)
Q Consensus 181 --~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~D 226 (673)
...+..+++.++|+|+++.....-..++..++..+.+++++--.++
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 2334457788999999987554444555566666777666544444
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.85 E-value=0.012 Score=56.60 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
...++|+|++|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999763
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.73 E-value=0.011 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
...++++|++|+|||||+|.|.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4578999999999999999998753
No 275
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.67 E-value=0.038 Score=59.64 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc------------------Ccccccc-ccceeeeEEEE----EEEecCC--eEEEEE
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN------------------TSVVKSE-FGGITQHIGAF----VVTLKSG--EQVTFL 168 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~------------------~~~~~~~-~~g~T~~~~~~----~v~~~~~--~~i~li 168 (673)
....|+|+|..++|||+|+|.|+. ..|.... ....|..+-.. .+..+++ ..+.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 456788999999999999996641 1222111 11223333222 1222233 358899
Q ss_pred eCCCCCcchhh-----hh--hccccCCeEEEEEECCCCChHhhHHHHHHHH
Q psy4665 169 DTPGHAAFSNM-----RS--RGAHCTDIVVLVVAADDGVMEQTVESIRMAR 212 (673)
Q Consensus 169 DTpG~~~f~~~-----~~--~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~ 212 (673)
||.|..+-... +. -++-.++..| +.....+..+.++.+....
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LLSS~~I--yN~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHHCSEEE--EEEESSCCHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHHhhhee--ecccccCCHHHHHHHHHHH
Confidence 99996443221 11 1222345444 4444456666666665544
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.47 E-value=0.022 Score=55.05 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.9
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.+...|+|+|++|||||||++.|....
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3456789999999999999999998653
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.022 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
...++|+|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.42 E-value=0.022 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
....++|+|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999999764
No 279
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.42 E-value=0.02 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+++|+|++|+|||||++.|.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 280
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.30 E-value=0.068 Score=57.50 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=51.6
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCccccccccceeeeEEEEEEEecCCeEEEEEeCCCCCcchhhh---hhccccCC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMR---SRGAHCTD 188 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~~~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG~~~f~~~~---~~~~~~aD 188 (673)
...+..|.++|.+||||||+..+|.... + +.++|+--...|.... ...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-------~-----------------~~~i~~D~~~~~~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-------G-----------------YVHVNRDTLGSWQRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG-------T-----------------CEECCGGGSCSHHHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc-------C-----------------cEEEccchHHHHHHHHHHHHHHHhc--
Confidence 4556789999999999999999997532 0 0011111011232222 222222
Q ss_pred eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCC
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID 226 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~D 226 (673)
...+|+|+......+....+..+...+.++.++.-.++
T Consensus 309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 309 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 22356888876655555666667777888766665544
No 281
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.27 E-value=0.22 Score=55.96 Aligned_cols=183 Identities=16% Similarity=0.136 Sum_probs=110.3
Q ss_pred CCCccHHHHHHHHhhcCCCceEeeEEeeecC--CCChhhHHHHhhcCCeEEEEcCCCCH-------hHHhHHHHcCCe--
Q psy4665 469 DVDGSVEALLDVFDTYTSALCRLDIVHYGVG--QVSATDVELATLFNAIIYTFNTTLHP-------AAKTSAEELGVT-- 537 (673)
Q Consensus 469 d~~GsleAi~~~l~~~~~~~~~i~iv~~~vG--~it~~Dv~lA~~~~a~I~~Fnv~~~~-------~~~~~a~~~~V~-- 537 (673)
|+-|..+-..+....+..-..-+-|+++.=| +-|..-..+|...+-.++-|--|++. ...++++..+..
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 7777655444444444445567777777444 33444455566556555555444432 124555555653
Q ss_pred -EEEec-----hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCE
Q psy4665 538 -VKQFN-----VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNE 611 (673)
Q Consensus 538 -i~~~~-----iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~ 611 (673)
++.-+ -|-+|++.+.+.+.. |.....-.-.|.|.+.+.-. ..+.++-++|.+|++++|.++.+++.|+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~---p~~~~~~p~~alI~d~~~d~---~~G~v~~~rV~sG~l~~Gd~v~~~~~~~ 230 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPP---PEGDPEGPLQALIIDSWFDN---YLGVVSLIRIKNGTLRKGDKVKVMSTGQ 230 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCC---CCCCTTSCCEEEEEEEEEET---TTEEEEEEEEEESCEESSCEEEETTTCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCC---ccccccCCceeeeeeccccc---cccEEEEEEEEeCEEecCCEEEeccccc
Confidence 33322 355666655544422 22111122345565555443 3467999999999999999999999887
Q ss_pred EEEEEeeecccccccccccccccceeEEE--EcCCCCCCCCCCEEEEEE
Q psy4665 612 VLFEGKLESMKHLKEEVTSIKKELECGLR--LEDPSIEFEPGDTIVCFV 658 (673)
Q Consensus 612 ~i~~g~i~sl~~~k~~v~~~~~g~ecgi~--~~~~~~~~~~gD~i~~~~ 658 (673)
..--++|..+.-...+++++.+|+-+.+. +.+.. ++..||.|-.-+
T Consensus 231 ~~~v~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~-~~~~GDtl~~~~ 278 (599)
T 3cb4_D 231 TYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIH-GAPVGDTLTLAR 278 (599)
T ss_dssp EEECCEEEEESSSEEECSEECTTCEEEEECCCSSGG-GSCTTCEEEESS
T ss_pred eeEEeeeeeccCCceECCEEcCCCeeEeeccccccc-cCccCCEeeecC
Confidence 65455666665567889999999944442 33445 899999997543
No 282
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=94.18 E-value=0.06 Score=45.08 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred EEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec--ccccceeccCccccccCcEEEeeeCCCC
Q psy4665 332 EAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS--RKTLINTALGTVQRTSGTVKISLGFKIN 404 (673)
Q Consensus 332 ~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~gl~~~ 404 (673)
.+-|.+++..+..|+++-++|.+|.++.+..+..-+. .+++.+|. ..+++++..|.= |++ ++++.
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~E------CGi--~l~~~ 79 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYE------CGL--TIKNF 79 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCE------EEE--ECTTC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcE------EEE--EEcCc
Confidence 5677788888888999999999999999998854332 25666676 668999999998 883 45666
Q ss_pred CCCCCCCeEeecC
Q psy4665 405 PFCPSGDVDGSVE 417 (673)
Q Consensus 405 ~~~~~Gd~l~~~~ 417 (673)
..+..||++-..+
T Consensus 80 ~dik~GD~Ie~ye 92 (99)
T 1d1n_A 80 NDIKEGDVIEAYV 92 (99)
T ss_dssp SSCSSCSEEEEEC
T ss_pred CCCCCCCEEEEEE
Confidence 6677899986544
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.022 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..++|+|++|||||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999864
No 284
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.04 E-value=0.028 Score=54.93 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.1
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+++...++|+|++|||||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999998753
No 285
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=93.89 E-value=0.18 Score=57.98 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=63.2
Q ss_pred EEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc-ccccccccccccceeEEEEcCCCCCC
Q psy4665 570 EANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK-HLKEEVTSIKKELECGLRLEDPSIEF 648 (673)
Q Consensus 570 ~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~~~~~g~ecgi~~~~~~~~~ 648 (673)
.|.|-+++.-. ..+.++-+||.+|++++|..+...+.|+..-.++|..|. +.+++|+++..|+=|+|. +.+ ++
T Consensus 318 ~~~VfK~~~d~---~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl~-~~ 391 (704)
T 2rdo_7 318 SALAFKIATDP---FVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI--GLK-DV 391 (704)
T ss_pred EEEEEEEEEcC---CCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe--Ccc-cC
Confidence 34444554432 245799999999999999999998888765556666665 368999999999999997 677 88
Q ss_pred CCCCEEEE
Q psy4665 649 EPGDTIVC 656 (673)
Q Consensus 649 ~~gD~i~~ 656 (673)
..||.|-.
T Consensus 392 ~~GdTl~~ 399 (704)
T 2rdo_7 392 TTGDTLCD 399 (704)
T ss_pred ccCCEEeC
Confidence 99999964
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.88 E-value=0.033 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+.++|+|++|+|||||+++|...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999864
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.81 E-value=0.036 Score=53.17 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=33.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCcc--ccccccceeeeEEEEEEEecCCeEEEEEeCCC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~~--~~~~~~g~T~~~~~~~v~~~~~~~i~liDTpG 172 (673)
+...|+|+|++|+|||||+++|..... .......+|....... . +|..+.++|++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~-~G~~y~fvs~~~ 75 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--E-DGKEYHFISTEE 75 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--C-TTSSCEECCHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--e-ccccceeccHHH
Confidence 456799999999999999999986432 1112223333332111 1 455666666543
No 288
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=93.75 E-value=0.11 Score=57.77 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=57.3
Q ss_pred eeeEecC---CCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccc----cccccccccccceeEEEEcCCCCC
Q psy4665 575 QMFLITD---GKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKH----LKEEVTSIKKELECGLRLEDPSIE 647 (673)
Q Consensus 575 ~~f~~~~---~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~----~k~~v~~~~~g~ecgi~~~~~~~~ 647 (673)
.+|++.. -.-.+.++-+||.+|++++|..+.+.+.|+.. +|.++.. .+++|+++..|+-||+. +.. +
T Consensus 299 ~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~-~ 372 (529)
T 2h5e_A 299 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDV---VISDALTFMAGDRSHVEEAYPGDILGLH--NHG-T 372 (529)
T ss_dssp EEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEE---ECSCEECCCC-----CCEECTTCEEEEC--CSS-C
T ss_pred EEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEE---EeceeeEEeCCCceEcceECCCCEEEEe--ccC-C
Confidence 3676641 01135699999999999999999999999854 7777765 48899999999999886 556 8
Q ss_pred CCCCCEEEE
Q psy4665 648 FEPGDTIVC 656 (673)
Q Consensus 648 ~~~gD~i~~ 656 (673)
++.||.|-.
T Consensus 373 ~~~Gdtl~~ 381 (529)
T 2h5e_A 373 IQIGDTFTQ 381 (529)
T ss_dssp CCTTCEEES
T ss_pred CccCCEeec
Confidence 999999864
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.73 E-value=0.031 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
...|+|+|++|||||||++.|...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.72 E-value=0.03 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.427 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|++|||||||++.|.+-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999764
No 291
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.71 E-value=0.029 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+...|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.66 E-value=0.035 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
...++++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999874
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.65 E-value=0.037 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...+|+|+|++||||||+++.|..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999965
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.57 E-value=0.04 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~ 136 (673)
.++..|+|+|++|||||||++.|.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.38 E-value=0.043 Score=52.66 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.+...|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456678999999999999999999753
No 296
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=93.33 E-value=0.19 Score=57.72 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=63.5
Q ss_pred EEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc-ccccccccccccceeEEEEcCCCCCCC
Q psy4665 571 ANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK-HLKEEVTSIKKELECGLRLEDPSIEFE 649 (673)
Q Consensus 571 a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~~~~~g~ecgi~~~~~~~~~~ 649 (673)
|.|-+++.-. ..+.++-+||.+|++++|..++..+.|+..-.++|..+. +.+.+|+++..|+=|+|. +.+ ++.
T Consensus 311 a~VfK~~~d~---~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~-~~~ 384 (693)
T 2xex_A 311 ALAFKVMTDP---YVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GLK-DTG 384 (693)
T ss_dssp EEEEEEEEET---TTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SCS-SCC
T ss_pred EEEEEeeecC---CCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe--Ccc-cCc
Confidence 4444444433 235699999999999999999999888766556776666 578999999999999987 667 889
Q ss_pred CCCEEEE
Q psy4665 650 PGDTIVC 656 (673)
Q Consensus 650 ~gD~i~~ 656 (673)
.||.|-.
T Consensus 385 ~GdTl~~ 391 (693)
T 2xex_A 385 TGDTLCG 391 (693)
T ss_dssp TTCEEEE
T ss_pred cCCEEec
Confidence 9999964
No 297
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.32 E-value=0.038 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+...++|+|++|+|||||++.|.+-.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998743
No 298
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=93.32 E-value=0.22 Score=57.18 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=65.9
Q ss_pred EEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc-ccccccccccccceeEEEEcCCCCCC
Q psy4665 570 EANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK-HLKEEVTSIKKELECGLRLEDPSIEF 648 (673)
Q Consensus 570 ~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~~~~~g~ecgi~~~~~~~~~ 648 (673)
.|.|-+++.-. ..+.++-+||.+|++++|..+...+.|+..-.++|..+. +.+.+|+++..|+=|+|. +.+ ++
T Consensus 310 ~~~Vfk~~~d~---~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~-~~ 383 (691)
T 1dar_A 310 AALAFKIMADP---YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GLK-ET 383 (691)
T ss_dssp EEEEEEEEEET---TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CCS-SC
T ss_pred EEEEEEEEEcC---CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe--Ccc-cC
Confidence 44555555433 245799999999999999999999888776667888877 578999999999999987 777 88
Q ss_pred CCCCEEEE
Q psy4665 649 EPGDTIVC 656 (673)
Q Consensus 649 ~~gD~i~~ 656 (673)
..||.|-.
T Consensus 384 ~~Gdtl~~ 391 (691)
T 1dar_A 384 ITGDTLVG 391 (691)
T ss_dssp CTTCEEEE
T ss_pred ccCCEEec
Confidence 99999964
No 299
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.21 E-value=0.049 Score=51.96 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+...|+|+|++|||||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34589999999999999999997653
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.18 E-value=0.042 Score=52.81 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+...|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999763
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.18 E-value=0.043 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+..|+|+|.+|||||||.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 302
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.17 E-value=0.17 Score=50.42 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=48.8
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDK 227 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl 227 (673)
..+.+.|+|||+...........+..+|.+++|+.++..........++.+...+.|++ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 34578999999864432222222336899999998887666667777788888889977 99999884
No 303
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=93.14 E-value=0.71 Score=51.82 Aligned_cols=183 Identities=15% Similarity=0.108 Sum_probs=107.7
Q ss_pred eCCCccHHHHHHHHhhcCCCceEeeEEeeecCC--CChhhHHHHhhcCCeEEEEcCCCCH-------hHHhHHHHcCCe-
Q psy4665 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ--VSATDVELATLFNAIIYTFNTTLHP-------AAKTSAEELGVT- 537 (673)
Q Consensus 468 ad~~GsleAi~~~l~~~~~~~~~i~iv~~~vG~--it~~Dv~lA~~~~a~I~~Fnv~~~~-------~~~~~a~~~~V~- 537 (673)
-|+-|..+=..+....+..-..-+=|+++.-|. -|..-..+|...+-.++-|--|++. ...++++..+..
T Consensus 78 iDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 78 IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157 (600)
T ss_dssp ECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG
T ss_pred EECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc
Confidence 377776554334444444455666677765552 2233344555555544444434432 123444445542
Q ss_pred --EEEec-----hhhHHHHHHHHHHhccCCceeEEEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCC
Q psy4665 538 --VKQFN-----VIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRN 610 (673)
Q Consensus 538 --i~~~~-----iIY~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~ 610 (673)
++..+ -|-+|++.+-+.+- +|.....-.-.+.|.+.+.-. ..+.++-++|.+|.+++|..+.+++.|
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp---~p~~~~~~pl~~lV~~~~~d~---~~G~v~~~rV~sG~l~~Gd~I~~~~~~ 231 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP---PPKGDPQKPLKALIFDSYYDP---YRGAVAFVRIFDGEVKPGDKIMLMSTG 231 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC---CCCCCTTSCCEEEEEEEEEET---TTEEEEEEEEEESEECTTCEEEETTTT
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc---cccccccCCcceeEEEEeecc---cceEEEEEEEEeCEEecCCEEEecccc
Confidence 33222 35566665554442 222211112256666666543 346899999999999999999999988
Q ss_pred EEEEEEeeecccccccccccccccceeEEE--EcCCCCCCCCCCEEEEE
Q psy4665 611 EVLFEGKLESMKHLKEEVTSIKKELECGLR--LEDPSIEFEPGDTIVCF 657 (673)
Q Consensus 611 ~~i~~g~i~sl~~~k~~v~~~~~g~ecgi~--~~~~~~~~~~gD~i~~~ 657 (673)
+..--++|..+.-...+++++.+|+-+.+. +.+.. +++.||.|-.-
T Consensus 232 ~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~-~~~~GDtl~~~ 279 (600)
T 2ywe_A 232 KEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVR-DIRIGDTITHA 279 (600)
T ss_dssp EEEECCEEEEESSSEEEESCEETTCEEEEESSCCCTT-SSCTTCEEEES
T ss_pred ceEeeecccccCCCceECCEEecCceeeeeccccchh-hccCCCEEEeC
Confidence 765445555555556889999999954443 34555 89999999753
No 304
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.12 E-value=0.043 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.-.++++|++|||||||++.+..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 44789999999999999998653
No 305
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.11 E-value=0.25 Score=42.78 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=59.2
Q ss_pred eEEEEEEEEeecCCcE---EEEEEeeecEEeeCCEEEeCCc-----ceEEEEec--ccccceeccCccccccCcEEEeee
Q psy4665 331 VEAMIVESKFDTHRGK---LATALVQRGTLKKGAIVVAGQA-----WAKVRSIS--RKTLINTALGTVQRTSGTVKISLG 400 (673)
Q Consensus 331 ~~~~V~e~~~~~~~G~---v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~--~~~v~~a~~G~~~~~~g~v~~i~g 400 (673)
..+-|.+++..+..|+ +|-++|..|.++.+..+..-+. .+++.+|. ..+++++..|.= |++ +
T Consensus 11 G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~E------CGi--~ 82 (120)
T 2crv_A 11 GEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMD------CGL--S 82 (120)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCE------EEE--E
T ss_pred EEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCE------EEE--E
Confidence 3567888888877788 9999999999999987743332 24555665 667999999998 883 4
Q ss_pred CCCCC-CCCCCCeEeecC
Q psy4665 401 FKINP-FCPSGDVDGSVE 417 (673)
Q Consensus 401 l~~~~-~~~~Gd~l~~~~ 417 (673)
+++.. .+..||++-..+
T Consensus 83 l~~fniDik~GDiIE~ye 100 (120)
T 2crv_A 83 LDEEKVEFKPGDQVICYE 100 (120)
T ss_dssp CSCTTSCCCTTEEEEEEC
T ss_pred EccCCCCCCCCCEEEEEE
Confidence 56655 667899986654
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.08 E-value=0.052 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.+.++|+|++|+|||||+.+|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 307
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.08 E-value=0.044 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++|+|+.|||||||++.|.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999998643
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.02 E-value=0.048 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++|+|+.|||||||++.|.+-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998643
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.90 E-value=0.051 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997754
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.87 E-value=0.058 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...|+|+|++|||||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.72 E-value=0.058 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.9
Q ss_pred CEEEEEeCCCCChhHHHHHH
Q psy4665 116 PVVTIMGHVDHGKTTLLDTL 135 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L 135 (673)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 312
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.68 E-value=0.058 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
-.++++|+.|||||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998753
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.52 E-value=0.065 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|+++|.+||||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 314
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.52 E-value=0.056 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=21.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
-.++++|+.|+|||||++.|.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 315
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.47 E-value=0.06 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998653
No 316
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.42 E-value=0.061 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|||||||++.|.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 317
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.42 E-value=0.063 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+--.++|+|+.|+|||||++.|.+-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998753
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.41 E-value=0.036 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..++|+|++|+|||||++.|.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.39 E-value=0.067 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 320
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.38 E-value=0.062 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++|+|+.|+|||||++.|.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998653
No 321
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.36 E-value=0.064 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-.++|+|+.|+|||||++.|.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998753
No 322
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.35 E-value=0.063 Score=54.33 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+--.++|+|+.|||||||++.|.+-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998743
No 323
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.33 E-value=0.064 Score=54.03 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.--.++|+|+.|||||||++.|.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.27 E-value=0.073 Score=50.18 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.8
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.+++.|+|+|.+||||||+...|..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999864
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.26 E-value=0.065 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.23 E-value=0.1 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.++..|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999965
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.22 E-value=0.071 Score=50.59 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.1
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+..++..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3456778999999999999999999764
No 328
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.21 E-value=0.46 Score=53.40 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHhccCCceeE--EEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecc
Q psy4665 544 IYKLVEDVKEEINAMLPHTYA--EEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESM 621 (673)
Q Consensus 544 IY~l~~~~~~~~~~~~~~~~~--~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl 621 (673)
|-+|++.+..++...+++... ..-...+.|.+++... ..+.++-++|.+|+++.|..+.+...+... ..+|.+|
T Consensus 205 I~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~---g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~-~~rV~~i 280 (594)
T 1g7s_A 205 IPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEET---GLGMTIDAVIYDGILRKDDTIAMMTSKDVI-STRIRSL 280 (594)
T ss_dssp HHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEET---TEEEEEEEEEEESEEETTCEEEEEBSSSEE-EEECCEE
T ss_pred chhHHHHHHhhccccchhhhccccCCCceeEEEEEEEeC---CcEEEEEEEEeeCEEeeCCEEEECCCCCce-eEEEeEE
Confidence 456777777666544432111 1224577788888765 346799999999999999999888765533 4577777
Q ss_pred cc------------ccccccccc--ccceeEEEEcCCCCCCCCCCEEEEEEE
Q psy4665 622 KH------------LKEEVTSIK--KELECGLRLEDPSIEFEPGDTIVCFVK 659 (673)
Q Consensus 622 ~~------------~k~~v~~~~--~g~ecgi~~~~~~~~~~~gD~i~~~~~ 659 (673)
.. ....|+++. .|..|++ .+.+ +...||.+...+.
T Consensus 281 ~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l~-~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 281 LKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGID-DVMAGSPLRVVTD 329 (594)
T ss_dssp EEECCCC----CCCSEEECSEEESSEEEEEEC--SSCT-TBCTTCEEEECSS
T ss_pred EeccccchhhhccCCceEccEEcCCCCcEEEE--cccC-CCCCCCEEEecCC
Confidence 53 345788887 6776664 4556 7899999988754
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.19 E-value=0.061 Score=52.28 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|+.|+|||||++.|.+-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.18 E-value=0.091 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+...|+|.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 331
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.17 E-value=0.068 Score=52.89 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.16 E-value=0.078 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++|+++|.+||||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999964
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.16 E-value=0.089 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.++..|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34677899999999999999999964
No 334
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.12 E-value=0.071 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 335
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.11 E-value=0.073 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.09 E-value=0.071 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4457999999999999999999865
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.09 E-value=0.054 Score=56.03 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+.+.++|+|..|||||||++.|.+.
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 35678999999999999999999864
No 338
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.08 E-value=0.083 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+...|+++|.+||||||+...|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4456899999999999999999964
No 339
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.05 E-value=0.071 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..-.++|+|+.|+|||||++.|.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999864
No 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.02 E-value=0.074 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 341
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.00 E-value=0.075 Score=49.26 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 342
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.96 E-value=0.077 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+...|+|+|++|+|||||++.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
No 343
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.96 E-value=0.078 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...|+++|++|||||||++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 344
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.96 E-value=0.073 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+...|+|+|++|||||||++.|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34568999999999999999998763
No 345
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.95 E-value=0.076 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999865
No 346
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=91.92 E-value=0.33 Score=53.83 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=55.9
Q ss_pred cCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccc-cccccccccccceeEEEEcCCCCCCCCCCEEEE
Q psy4665 585 KVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKH-LKEEVTSIKKELECGLRLEDPSIEFEPGDTIVC 656 (673)
Q Consensus 585 ~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~-~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~ 656 (673)
.+.++-+||.+|++++|..+...|.|+....+++..+.. .+++|+++.+|+=||+. +.. +++.||.|-.
T Consensus 311 ~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~l~-~~~~GDtl~~ 380 (528)
T 3tr5_A 311 RDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH--NHG-TIQIGDTFTQ 380 (528)
T ss_dssp CCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--ESS-SCCTTCEEES
T ss_pred CceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc--CCC-CCccCCEEcC
Confidence 367999999999999999999999998764445444433 67899999999999874 445 8899999964
No 347
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.90 E-value=0.076 Score=53.31 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|||||||++.|.+-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347999999999999999999763
No 348
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.87 E-value=0.71 Score=43.38 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=30.4
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCC
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~ 230 (673)
+.-++++|--.-..+...+.+..+...++++++.+...|-...
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~ 118 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQN 118 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTTSC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccccccC
Confidence 4668888876655455666676666669999999998885443
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.85 E-value=0.083 Score=53.20 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.81 E-value=0.1 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
++.++|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999654
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.81 E-value=0.099 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.4
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..++..|+|.|.+||||||+...|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44566899999999999999999964
No 352
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.76 E-value=0.081 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 353
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.75 E-value=0.08 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++|+|+.|+|||||++.|.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998753
No 354
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.70 E-value=0.085 Score=50.06 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEeCCCCChhHHHHHHhcC
Q psy4665 118 VTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 118 V~ivG~~n~GKSTLl~~L~~~ 138 (673)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 355
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.69 E-value=0.069 Score=52.21 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=17.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHh-cC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLR-NT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~-~~ 138 (673)
....++|+|++|||||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44689999999999999999998 54
No 356
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.67 E-value=0.092 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|++|+|||||++.|.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4468999999999999999999753
No 357
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.67 E-value=0.097 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 358
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.67 E-value=0.083 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..-.++|+|+.|+|||||++.|.+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999865
No 359
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.63 E-value=0.085 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.55 E-value=0.078 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHhcC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.++++|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.52 E-value=0.1 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+...|+|+|.+|+|||||++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 362
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.48 E-value=0.12 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+..|.++|.+||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.45 E-value=0.12 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHh
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~ 136 (673)
.+...|+|+|++|||||||++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999997
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.43 E-value=0.094 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++..|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998854
No 365
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.41 E-value=0.083 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...|+++|.+||||||+...|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 366
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.33 E-value=0.1 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999965
No 367
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.30 E-value=0.11 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.+.|.++|.+|+||||+...|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 368
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.30 E-value=0.11 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..+++.|.|+|+|||||||....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667888999999999999999864
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.27 E-value=0.098 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.20 E-value=0.098 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999876
No 371
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.15 E-value=0.1 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|+|||||+..|.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999863
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.14 E-value=0.11 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.09 E-value=0.12 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 374
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.09 E-value=0.11 Score=52.30 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-.++|+|+.|+|||||++.|.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 375
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.08 E-value=0.12 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.2
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++.++..|+|.|++|+||||+.+.|..
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999863
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.05 E-value=0.11 Score=49.51 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.05 E-value=0.11 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++..|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 378
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.01 E-value=0.12 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+...|+++|.+|+||||+...|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3557899999999999999999865
No 379
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.00 E-value=0.21 Score=57.04 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhccCCceeE-EEEeEEEEEeeeeEecCCCCcCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeeccc
Q psy4665 544 IYKLVEDVKEEINAMLPHTYA-EEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK 622 (673)
Q Consensus 544 IY~l~~~~~~~~~~~~~~~~~-~~~~g~a~v~~~f~~~~~~~~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~ 622 (673)
|-.|++.+-+++-. |... ..-.-.|.|.+++.-. ..+.++-++|.+|++++|..+.+.+. ..+|.+|.
T Consensus 261 v~~Ll~~i~~~lp~---p~~~~~~~p~~~~V~k~~~d~---~~G~~~~~rV~sG~l~~g~~v~~~~~-----~~~v~~l~ 329 (665)
T 2dy1_A 261 VLPLLELILEALPS---PTERFGDGPPLAKVFKVQVDP---FMGQVAYLRLYRGRLKPGDSLQSEAG-----QVRLPHLY 329 (665)
T ss_dssp HHHHHHHHHHHSCC---HHHHHCSCSCEEEEEEEEEET---TTEEEEEEEEEESEECTTEEEBCTTS-----CEEESSEE
T ss_pred HHHHHHHHHHhCCC---ccccCCCCCeEEEEEEEEEcC---CCCeEEEEEEcccEEecCCEEEcCCC-----eEEEeEEE
Confidence 55666665544421 2210 1112256666666543 24579999999999999999876652 23455544
Q ss_pred c----cccccccccccceeEEEEcCCCCCCCCCCEEEE
Q psy4665 623 H----LKEEVTSIKKELECGLRLEDPSIEFEPGDTIVC 656 (673)
Q Consensus 623 ~----~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~~ 656 (673)
. ..++|+++..|+-|+|. +.+ ++..||.|-.
T Consensus 330 ~~~g~~~~~v~~a~aG~iv~i~--gl~-~~~~Gdtl~~ 364 (665)
T 2dy1_A 330 VPMGKDLLEVEEAEAGFVLGVP--KAE-GLHRGMVLWQ 364 (665)
T ss_dssp EEETTEEEEESCEETTCEEEES--SCT-TCCTTCEEES
T ss_pred EEeCCCeeECCEECCCCEEEEe--CCc-cCccCCEEec
Confidence 3 67899999999999996 667 8999999964
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.97 E-value=0.11 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+++.|+++|.+||||||+...|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 381
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.94 E-value=0.11 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.-.++|+|++|+|||||+..|..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445799999999999999999874
No 382
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.94 E-value=0.12 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.|+|.|.+||||||+...|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999965
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.88 E-value=0.13 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++..|+|.|.+||||||+...|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999964
No 384
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.88 E-value=0.095 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
...+++.|++|+|||||+.++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999998764
No 385
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.84 E-value=0.12 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|+.|+|||||++.|.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999998653
No 386
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.82 E-value=0.12 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 387
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.81 E-value=0.16 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.3
Q ss_pred cCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 112 MKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 112 ~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..++..|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999864
No 388
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.80 E-value=0.14 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|+|+|.+||||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.73 E-value=0.12 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+..|+|.|.+||||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999998864
No 390
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.66 E-value=0.13 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
--.++|+|++|||||||++.|.+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 391
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.61 E-value=0.12 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=16.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|.|.|.+||||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 392
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.58 E-value=0.081 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..-.++|+|++|+|||||++.|.+-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4457999999999999999999764
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.55 E-value=0.12 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++|+|+|.+|+||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 394
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.55 E-value=0.13 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
....++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999764
No 395
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.51 E-value=0.13 Score=54.09 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+--.++|+|++|||||||++.|.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44579999999999999999998753
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.50 E-value=0.14 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|+|+|.+||||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.43 E-value=0.14 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=22.2
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++.+|+|.|.+||||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 398
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.41 E-value=0.39 Score=48.26 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=48.8
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCCC
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDKP 228 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl~ 228 (673)
.+.|+|||+........ ..+..+|.+++|+.+...........++.+...+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~d~~-~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVTDAQ-LFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCSHHH-HHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHHHHH-HHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 48999999864432221 13456899999999988777778888888888888866 899999864
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.40 E-value=0.17 Score=49.57 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=22.2
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...++.+|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999964
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.37 E-value=0.14 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999875
No 401
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.30 E-value=0.14 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.--.++|+|++|||||||++.|.+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.29 E-value=0.2 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHh
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~ 136 (673)
...++..|+|.|.+||||||+.+.|.
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34456789999999999999999996
No 403
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.18 E-value=0.14 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++++|++|||||||++.|.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34579999999999999999998753
No 404
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.08 E-value=0.15 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++++|++|||||||++.|.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.04 E-value=0.13 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-.++|+|++|+|||||++.|.+--
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998653
No 406
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.99 E-value=0.15 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+--.++|+|++|||||||++.|.+-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.88 E-value=0.14 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|+|||||++.|.+-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 408
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.88 E-value=0.15 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++|+|++|||||||++.|.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34579999999999999999998753
No 409
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.87 E-value=0.19 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++.|+|.|.+||||||+...|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 410
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.87 E-value=0.16 Score=53.69 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.--.++|+|++|||||||++.|.+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999998753
No 411
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.80 E-value=0.15 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
-.++|+|++|||||||++.|.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999763
No 412
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.41 E-value=1 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+.+.|.|++|+|||||+.++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 413
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.35 E-value=0.17 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++|+|+|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 414
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.34 E-value=0.19 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.30 E-value=0.22 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+...+|+|+.|+|||||+++|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999854
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.23 E-value=0.22 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++.|+|.|.+||||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 417
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.19 E-value=0.93 Score=44.78 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=47.4
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHH---HH---cCCCEE-EEEecCCCCCCcHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMA---RE---AKVPII-VAINKIDKPAADIER 234 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~---~~---~~iP~I-vviNK~Dl~~~~~~~ 234 (673)
.+.+.++|||+..... ....+..+|.+++++.++..........++.+ .. .+.+++ +++|+.|........
T Consensus 111 ~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~ 188 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQ 188 (257)
T ss_dssp TCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHH
T ss_pred CCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHH
Confidence 4678999999864332 23355779999999998764333333333333 22 256664 899999875433333
Q ss_pred HHHHHHH
Q psy4665 235 TKNMLLA 241 (673)
Q Consensus 235 ~~~~l~~ 241 (673)
..+.+.+
T Consensus 189 ~~~~l~~ 195 (257)
T 1wcv_1 189 VEAQLRA 195 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 418
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=89.16 E-value=0.98 Score=49.54 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred cchhHHHHHHHHH-hhhcccCCCCCeEEEEEEEEeecCCcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec--cc
Q psy4665 307 VDNLTEAIVAQAE-IMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS--RK 378 (673)
Q Consensus 307 l~~Ll~~i~~~~~-~~~~~~~~~~~~~~~V~e~~~~~~~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~--~~ 378 (673)
+.+|++.+..+.. +.++.....--..+.|.+++..+..|.++-+.|..|+++.|..+..-+. .+++.+|. ..
T Consensus 384 iy~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~ 463 (501)
T 1zo1_I 384 IYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKD 463 (501)
T ss_dssp CSHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTE
T ss_pred HHHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCc
Confidence 4578887776543 2222222222334567777777777999999999999999999865322 35777776 77
Q ss_pred ccceeccCccccccCcEEEeeeCCCCCCCCCCCeEeecCC
Q psy4665 379 TLINTALGTVQRTSGTVKISLGFKINPFCPSGDVDGSVEA 418 (673)
Q Consensus 379 ~v~~a~~G~~~~~~g~v~~i~gl~~~~~~~~Gd~l~~~~~ 418 (673)
+++++..|+= |++ ++++...+..||.+-..+-
T Consensus 464 ~v~e~~~g~e------cgi--~~~~~~~~~~gd~~~~~~~ 495 (501)
T 1zo1_I 464 DVNEVRNGME------CGI--GVKNYNDVRTGDVIEVFEI 495 (501)
T ss_dssp EESEEETTCC------EEE--EBCCCTTCCTTCEEEECCC
T ss_pred cccEECCCCE------EEE--EEcCcCCCCCCCEEEEEEE
Confidence 8999999998 883 3555556778999976653
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.10 E-value=0.19 Score=49.90 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.++..|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999965
No 420
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.09 E-value=0.18 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|+|||||++.|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999763
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.07 E-value=0.19 Score=51.56 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC------cccc--ccc---------------cceeeeEEEEE-EE-----------
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT------SVVK--SEF---------------GGITQHIGAFV-VT----------- 158 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~------~~~~--~~~---------------~g~T~~~~~~~-v~----------- 158 (673)
+.-.++++|+.|||||||+..|.+- ++.. .+. .++..-..... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 4458999999999999999998642 1100 000 01110000000 00
Q ss_pred -ecCCeEEEEEeCCCCCcchhhhh-----------hc-cccCCeEEEEEECCCCChHhhHHHHHHHH-HcCCCEEEEEec
Q psy4665 159 -LKSGEQVTFLDTPGHAAFSNMRS-----------RG-AHCTDIVVLVVAADDGVMEQTVESIRMAR-EAKVPIIVAINK 224 (673)
Q Consensus 159 -~~~~~~i~liDTpG~~~f~~~~~-----------~~-~~~aD~~vlVvda~~g~~~q~~~~l~~~~-~~~iP~IvviNK 224 (673)
...+....++||.|...+..... ++ +..++-+++|+|++.+..... .++.+. ..++. +++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g~t-~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGIT-GLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCCC-EEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcCCC-EEEEeC
Confidence 00223467899999754322111 11 134677789999777654432 233333 34554 567899
Q ss_pred CCCCCCcHHHHHHHHHHc
Q psy4665 225 IDKPAADIERTKNMLLAQ 242 (673)
Q Consensus 225 ~Dl~~~~~~~~~~~l~~~ 242 (673)
+|-. +............
T Consensus 256 lD~~-~~~g~~l~~~~~~ 272 (302)
T 3b9q_A 256 LDGS-ARGGCVVSVVEEL 272 (302)
T ss_dssp CSSC-SCTHHHHHHHHHH
T ss_pred CCCC-CccChheehHHHH
Confidence 8864 3344444444443
No 422
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.05 E-value=0.15 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 423
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.01 E-value=0.2 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|.++|++|||||||..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999965
No 424
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.99 E-value=0.19 Score=49.02 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.+...|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999998764
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.98 E-value=0.2 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.--.++|+|++|||||||++.|.+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3457999999999999999999864
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.98 E-value=0.21 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 427
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.98 E-value=0.14 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-.++++|++|||||||++.|.+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3579999999999999999998753
No 428
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.75 E-value=0.85 Score=46.48 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCCEE-EEEecCCCC
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII-VAINKIDKP 228 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP~I-vviNK~Dl~ 228 (673)
.+.|+|||+........ ..+..+|.+++|+.+...........++.+...+.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 48999999865433222 23467999999999988777788888888888888744 788999864
No 429
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.74 E-value=0.11 Score=49.78 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.|+|+|.+|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 430
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.68 E-value=0.13 Score=50.20 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=29.8
Q ss_pred CeEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 188 D~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
+.-++++|--.-......+.+..+...++|+|+++-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 355777787665544555666666667999999999888654
No 431
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.66 E-value=0.22 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999865
No 432
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.55 E-value=0.19 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+++|+|++|||||||+++|++-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446999999999999999999764
No 433
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.49 E-value=0.22 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.|+|.|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 434
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.47 E-value=0.25 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+|+|.|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 435
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=88.41 E-value=0.87 Score=50.64 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=55.5
Q ss_pred cCcEEeEEEeeCeeeeCCeEEEeeCCEEEEEEeeecccc-cccccccccccceeEEEEcCCCCCCCCCCEEE
Q psy4665 585 KVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKH-LKEEVTSIKKELECGLRLEDPSIEFEPGDTIV 655 (673)
Q Consensus 585 ~~~iaG~~V~~G~~~~~~~~~v~r~~~~i~~g~i~sl~~-~k~~v~~~~~g~ecgi~~~~~~~~~~~gD~i~ 655 (673)
.+.++=+||.+|++++|..+...|.|+..-.+++..+.- .+.+|+++.+|+=|+|. +.. ++..||.|-
T Consensus 329 ~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl~-~~~~GDTl~ 397 (548)
T 3vqt_A 329 RDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NHG-TIKIGDTFT 397 (548)
T ss_dssp --CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CSS-CCCTTCEEE
T ss_pred CCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec--CCc-cCccCCEec
Confidence 356999999999999999999999998775556555554 56789999999998875 667 899999875
No 436
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.37 E-value=0.21 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|+|+|++|+|||||...|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999964
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.22 E-value=0.2 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 438
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.21 E-value=0.25 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999763
No 439
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.19 E-value=0.29 Score=45.18 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
....+.+.|++|+|||+|+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998654
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.19 E-value=0.27 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
...|+|+|.+||||||+...|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 441
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.11 E-value=0.14 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++|+|++|||||||++.|.+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.10 E-value=0.26 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 443
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.09 E-value=1.3 Score=44.83 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCC
Q psy4665 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPA 229 (673)
Q Consensus 164 ~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~ 229 (673)
.+.|+|||......... ..+..+|.+++|+.+...........++.+...+.+ +-+|+|++|...
T Consensus 203 D~VIIDtpp~~~~~da~-~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVTDAA-IVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCTHHH-HHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchHHHH-HHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 48999999865443222 245679999999999987777788888888888887 568899999743
No 444
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.09 E-value=0.23 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
-.++|+|++|+|||||++.|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999763
No 445
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.07 E-value=0.25 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
-++++|++|+|||||++++.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999763
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.04 E-value=0.18 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++..|.++|.+||||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 447
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.98 E-value=0.29 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.70 E-value=0.26 Score=53.62 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.-..++|+|+.|+|||||++.|.+-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44679999999999999999997753
No 449
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.60 E-value=0.27 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|+|||||+..|...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
No 450
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.42 E-value=0.3 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHh
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~ 136 (673)
+...+|+|+.|+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999985
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.40 E-value=0.3 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+|.++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 452
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.40 E-value=1.2 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.2
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
-.+.|.|.||+|||||+..+..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4688999999999999988754
No 453
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.36 E-value=0.27 Score=51.61 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
++-.++++|+.|||||||+..|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 455899999999999999999864
No 454
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.31 E-value=0.33 Score=45.61 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.31 E-value=0.29 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+...|+++|.+|+||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999865
No 456
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.26 E-value=0.28 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+..++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999764
No 457
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.09 E-value=0.32 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+...|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999653
No 458
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.95 E-value=1.1 Score=44.32 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHc--CCCEEEEEecCCCCCCcHHHHHHHH
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA--KVPIIVAINKIDKPAADIERTKNML 239 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~--~iP~IvviNK~Dl~~~~~~~~~~~l 239 (673)
.+.+.++|||+.... .....+..+|.+++++.++..........++.+... +.++.+++|+++... ...+..+.+
T Consensus 144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~l 220 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEIL 220 (267)
T ss_dssp TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHHH
T ss_pred CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHHH
Confidence 456899999985432 333456679999999999765545555666666665 457889999995432 233444444
Q ss_pred H
Q psy4665 240 L 240 (673)
Q Consensus 240 ~ 240 (673)
.
T Consensus 221 ~ 221 (267)
T 3k9g_A 221 K 221 (267)
T ss_dssp T
T ss_pred h
Confidence 3
No 459
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.88 E-value=0.34 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHhcC
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.++|+|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999764
No 460
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.76 E-value=0.91 Score=44.82 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKP 228 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~ 228 (673)
.+.+.++|||+... ......+..+|.+++|+.++..........++.+...+.+ .-+++|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 45689999997544 3334466789999999988765445556666666666665 56899999864
No 461
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.76 E-value=1.2 Score=42.14 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=27.3
Q ss_pred eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCC
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~ 229 (673)
.-++++|=..-..+...+.++.+...++|+|+.+-+.|-..
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df~~ 122 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRG 122 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccccc
Confidence 33666675444434446677776667999999998888543
No 462
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.70 E-value=0.32 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCChhHHHHHHhc
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..+|+|+|.+|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 463
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.55 E-value=0.33 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.-.++|+|++|+|||||+..|.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 464
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.55 E-value=0.57 Score=45.68 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCC
Q psy4665 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDK 227 (673)
Q Consensus 161 ~~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl 227 (673)
..+.+.++|||+.... .....+..+|.+++|+.++...........+.+...+++ +.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4567899999985433 233456889999999988764444455556666667765 7899999983
No 465
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.54 E-value=0.36 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..-+|+|.|.+||||||+...|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999854
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.43 E-value=0.32 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
-.++|+|+.|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6799999999999999999965
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.29 E-value=0.39 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+....++++|++|+|||||++.|.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999985
No 468
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.27 E-value=0.4 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChhHHHHHHhc
Q psy4665 117 VVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 117 ~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.25 E-value=0.24 Score=49.37 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.3
Q ss_pred ccCCCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 111 ~~~~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+..++..|+|.|.+|+||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456778999999999999999998653
No 470
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.09 E-value=1.7 Score=42.03 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=31.1
Q ss_pred eEEEEEECCCCChHhhHHHHHHHHHcCCCEEEEEecCCCCCCcHHH
Q psy4665 189 IVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIER 234 (673)
Q Consensus 189 ~~vlVvda~~g~~~q~~~~l~~~~~~~iP~IvviNK~Dl~~~~~~~ 234 (673)
.-++.||=..-......+.+..+...++|+++++=..|-.+.-+.-
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~~~~F~~ 147 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEP 147 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTTSCBCTT
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccccCCCcc
Confidence 3366677655444455666666667899999999999976544333
No 471
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.06 E-value=0.37 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+--+++|+|+.|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 472
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.97 E-value=0.44 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.-.++++|++|+|||||+..|..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999986
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.96 E-value=0.45 Score=46.53 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 113 ~~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
.+..+|+|+|.+|+||||+...|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.92 E-value=0.42 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+.+.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.92 E-value=0.37 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
.--.++|+|+.|+|||||++.|.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998753
No 476
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=85.91 E-value=3 Score=46.13 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=69.4
Q ss_pred cchhHHHHHHHHH-hhhcccCCCCCeEEEEEEEEeecC---CcEEEEEEeeecEEeeCCEEEeCCc-----ceEEEEec-
Q psy4665 307 VDNLTEAIVAQAE-IMHLKADYGGPVEAMIVESKFDTH---RGKLATALVQRGTLKKGAIVVAGQA-----WAKVRSIS- 376 (673)
Q Consensus 307 l~~Ll~~i~~~~~-~~~~~~~~~~~~~~~V~e~~~~~~---~G~v~~~~V~~G~Lk~g~~v~~g~~-----~~kvr~i~- 376 (673)
+.+|++.+..... +..+.....-...+-|.+++..+. .|.++-++|..|+++.|..+..-+. .+++.+|.
T Consensus 423 iy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~ 502 (537)
T 3izy_P 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKH 502 (537)
T ss_dssp SCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcc
Confidence 5566666665432 122222233446788888887653 6799999999999999998754332 35666676
Q ss_pred -ccccceeccCccccccCcEEEeeeCCC-CCCCCCCCeEee
Q psy4665 377 -RKTLINTALGTVQRTSGTVKISLGFKI-NPFCPSGDVDGS 415 (673)
Q Consensus 377 -~~~v~~a~~G~~~~~~g~v~~i~gl~~-~~~~~~Gd~l~~ 415 (673)
..+++++..|.= |+ .++++ ...+..||++-.
T Consensus 503 ~k~~v~ev~~g~e------cg--i~~~~~~~~~~~gd~ie~ 535 (537)
T 3izy_P 503 HKDDTSVVKTGMD------CG--LSLDEEKIEFKVGDAIIC 535 (537)
T ss_dssp SSCCCSEEETTCE------EE--EESSSSCSSCSCCCEEEE
T ss_pred cCcccceEcCCCE------EE--EEEcCcccCCCCCCEEEE
Confidence 778999999998 88 34555 556678998854
No 477
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.87 E-value=0.41 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+..+.+.|++|+|||||+.++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.83 E-value=0.42 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
+.|+|.|.+|+||||+...|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999864
No 479
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.71 E-value=0.35 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
....+.|.|++|+|||+|+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999988654
No 480
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.62 E-value=0.44 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
....+.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998753
No 481
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.56 E-value=0.41 Score=46.57 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+.-.++|+|++|+|||||+..|...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999864
No 482
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.48 E-value=0.39 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++++|++|+|||||++.|.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34579999999999999999998643
No 483
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.36 E-value=0.39 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
-.++|+|+.|+|||||++.|.+-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999874
No 484
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.19 E-value=0.85 Score=44.16 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=47.7
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcCCC-EEEEEecCCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPA 229 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~iP-~IvviNK~Dl~~ 229 (673)
.+.+.++|||+... ......+..+|.+++|+.++..........++.+...+.+ .-+++|+.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 35688999998543 3334467889999999988765555566667777776765 568999998643
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.93 E-value=0.44 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
--.++|+|+.|+|||||++.|.+-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 457999999999999999999874
No 486
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.86 E-value=0.42 Score=53.66 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
..-.++++|++|+|||||++.|.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 487
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=84.77 E-value=0.39 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++++|++|+|||||++.|.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34579999999999999999998753
No 488
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.67 E-value=0.44 Score=50.13 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=18.9
Q ss_pred CEEEEEeCCCCChhHHHHHHh
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLR 136 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~ 136 (673)
...+|+|+.|+|||||+++++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467799999999999999986
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.56 E-value=0.46 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCChhHHHHHHhc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
..|.++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 490
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.56 E-value=0.46 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
+--+++|+|++|+|||||++.|.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3357999999999999999999875
No 491
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.53 E-value=0.42 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
+.-.++++|++|+|||||++.|.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44689999999999999999998643
No 492
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.34 E-value=1.3 Score=44.57 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHH------cCCC-EEEEEecCCCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE------AKVP-IIVAINKIDKPA 229 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~------~~iP-~IvviNK~Dl~~ 229 (673)
.+.+.|+|||+...... ...+..+|.+++++.++..........++.+.. .+++ .-+++|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 35689999998654322 234556999999999887555555555444443 3667 448999999753
No 493
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.17 E-value=0.79 Score=45.08 Aligned_cols=64 Identities=5% Similarity=0.067 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEEECCCCChHhhHHHHHHHHHcC---------CCEEEEEecCCC
Q psy4665 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAK---------VPIIVAINKIDK 227 (673)
Q Consensus 162 ~~~i~liDTpG~~~f~~~~~~~~~~aD~~vlVvda~~g~~~q~~~~l~~~~~~~---------iP~IvviNK~Dl 227 (673)
.+.+.++|||+... ......+..+|.+++|+.++..........++.+...+ .++-+++|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 56799999998543 23444667899999999887644445555555555433 457899999985
No 494
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.16 E-value=0.51 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 115 PPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 115 ~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
++.|+|+|++++|||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999999754
No 495
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.05 E-value=0.88 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCChhHHHHHHhcC
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+.|.|+||+|||+|+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999764
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.00 E-value=2.5 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
..+.|.|.|++|+|||+|+.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999543
No 497
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.97 E-value=0.55 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhc
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRN 137 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~ 137 (673)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 498
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.93 E-value=0.49 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCChhHHHHHHhcC
Q psy4665 114 RPPVVTIMGHVDHGKTTLLDTLRNT 138 (673)
Q Consensus 114 ~~~~V~ivG~~n~GKSTLl~~L~~~ 138 (673)
.--.++|+|+.|+|||||++.|.+-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3357999999999999999999874
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.91 E-value=0.5 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.4
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
-.++|+|+.|+|||||++.|.+-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.55 E-value=0.55 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred CEEEEEeCCCCChhHHHHHHhcCc
Q psy4665 116 PVVTIMGHVDHGKTTLLDTLRNTS 139 (673)
Q Consensus 116 ~~V~ivG~~n~GKSTLl~~L~~~~ 139 (673)
-.++|+|+.|+|||||++.|.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998754
Done!