RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4665
(673 letters)
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 631 bits (1630), Expect = 0.0
Identities = 244/585 (41%), Positives = 335/585 (57%), Gaps = 88/585 (15%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTP 171
+ R PVVTIMGHVDHGKTTLLD LR T V E GGITQHIGAF+V+L SGE++TFLDTP
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTP 60
Query: 172 GHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD 231
GHAAFS MR+RG TDIV+LVVAADDGVM+QTVESI+ A++A VPI++AINK DK AD
Sbjct: 61 GHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLG 291
E+ K LLA + ED GGD+QAV +SALTG N+ L EA
Sbjct: 121 PEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT------------------ 162
Query: 292 GDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATAL 351
+A AE++ LKAD G VE ++ES D RG + TA+
Sbjct: 163 -----------------------IALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAI 199
Query: 352 VQRGTLKKGAIVVAGQAWAKVRSISRKTLINTALGTVQRT--SGTVKISLGFKINPFCPS 409
+QRGTL+KG+I+VAG++WAKV + + + V S V I +G++ P +
Sbjct: 200 IQRGTLRKGSILVAGKSWAKV-----RLMFDENGRAVNEAYPSMPVGI-IGWRDLP--SA 251
Query: 410 GDV--------------------------DGSVEALLDVFDTYTSALCRLDIVHYGVTST 443
GD ++ + + + A + + V
Sbjct: 252 GDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWK 311
Query: 444 DQWRRYWTCSTPTRESKHGRIY--------LI--GDVDGSVEALLDVFDTYTS-ALCRLD 492
++ + + K +I GDVDGSVEA+L+V DTY + C LD
Sbjct: 312 ERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELD 371
Query: 493 IVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVK 552
+VH+GVG +S DV LA F+ +IY FN + A + GV +K +IY+L+ED++
Sbjct: 372 LVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDLQ 431
Query: 553 EEINAMLPHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEV 612
EE+++ LP E +GEA++L F IT+GKKKVPVAGCR KG ++K FKL+R V
Sbjct: 432 EELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHV 491
Query: 613 LFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCF 657
+++G L S+KH K++ + +K ++CGL L++ IEF+ GD I+C+
Sbjct: 492 IWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICY 536
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 410 bits (1057), Expect = e-136
Identities = 131/589 (22%), Positives = 231/589 (39%), Gaps = 80/589 (13%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ------ 164
+ R P+V+++GHVDHGKTTLLD +R ++V E GGITQHIGA + + E
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL 60
Query: 165 -----------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE 213
+ F+DTPGH AF+ +R RG D+ +L+V ++G QT E++ + R
Sbjct: 61 KKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 120
Query: 214 AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ P +VA NKID+ + S L +
Sbjct: 121 YRTPFVVAANKIDRIHGWRVHEGRPFMET---------------FSKQDIQVQQKLDTKV 165
Query: 274 ERTKNMLLAQGITVE------DLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMH---LK 324
L +G E D + +PISA+TG + L ++ A+ LK
Sbjct: 166 YELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK 225
Query: 325 ADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRSISRKTLINTA 384
+ P I+E K +T G A++ G L+K + + + T I +
Sbjct: 226 IEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVIS-----TRIR-S 279
Query: 385 LGTVQRT----SGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGV 440
L + K ++ + + + DV A L +V
Sbjct: 280 LLKPRPLEEMRESRKKFQKVDEVV---AAAGIKIVAPGIDDVM-----AGSPLRVVTDPE 331
Query: 441 TSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQ 500
++ ++ + + D GS+EA++ + + I +G
Sbjct: 332 KVREEILS--EIEDIKIDTDEAGVVVKADTLGSLEAVVKILRD-----MYVPIKVADIGD 384
Query: 501 VSATDVELATL------FNAIIYTFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEE 554
VS DV A + I FN + P+A + + + Q NVIY+L+E+ +E
Sbjct: 385 VSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEW 444
Query: 555 INAML---PHTYAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNE 611
+ + + E ++ A++ + + + K + G GV+++ + E
Sbjct: 445 VRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPL-MNDDGE 503
Query: 612 VLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSIE--FEPGDTIVCFV 658
+ G +ESM+ E + S + + + ++D GDT+ +
Sbjct: 504 TV--GTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVDI 550
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 345 bits (888), Expect = e-112
Identities = 128/260 (49%), Positives = 162/260 (62%), Gaps = 42/260 (16%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
R PVVTIMGHVDHGKT+LL+ +R+T V E GGITQHIGA+ V ++G +TFLDTPGH
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG-MITFLDTPGH 61
Query: 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIE 233
AAF++MR+RGA TDIVVLVVAADDGVM QT+E+I+ A+ A+VP++VA+NKIDKP AD +
Sbjct: 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD 121
Query: 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGD 293
R KN L GI E+ GG+ Q V +SA GT +D L +AI LL
Sbjct: 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAI------LL------------ 163
Query: 294 IQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQ 353
QAE++ LKA G ++ES D RG +AT LV+
Sbjct: 164 -----------------------QAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVR 200
Query: 354 RGTLKKGAIVVAGQAWAKVR 373
GTL KG IV+ G + +VR
Sbjct: 201 EGTLHKGDIVLCGFEYGRVR 220
Score = 158 bits (402), Expect = 5e-42
Identities = 59/198 (29%), Positives = 113/198 (57%), Gaps = 6/198 (3%)
Query: 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAA 527
DV GSVEA+ D ++ ++ I+ GVG ++ TD LA NAI+ FN +A
Sbjct: 308 ADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASA 367
Query: 528 KTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEVLGEANVLQMFLITDGKKKV- 586
+ E + ++ ++VIY L+++VK ++ ML ++++G A V +F K
Sbjct: 368 RKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSP----KFG 423
Query: 587 PVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLKEEVTSIKKELECGLRLEDPSI 646
+AGC ++GV+K++ +++R N V++EG+LES++ K++V ++ +ECG+ +++ +
Sbjct: 424 AIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN- 482
Query: 647 EFEPGDTIVCFVKNKVPQ 664
+ GD I F ++ +
Sbjct: 483 DVRTGDVIEVFEIIEIQR 500
Score = 31.7 bits (73), Expect = 0.77
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 410 GDVDGSVEALLDVFDTYTSALCRLDIVHYGV 440
DV GSVEA+ D ++ ++ I+ GV
Sbjct: 308 ADVQGSVEAISDSLLKLSTDEVKVKIIGSGV 338
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 278 bits (713), Expect = 1e-90
Identities = 96/163 (58%), Positives = 122/163 (74%), Gaps = 1/163 (0%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170
+++RPPVVTIMGHVDHGKTTLLD +R++ V + E GGITQHIGA+ VT+ +++TFLDT
Sbjct: 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKITFLDT 62
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
PGH AF+ MR+RGA TDIV+LVVAADDGVM QTVE+I A+ A VPIIVAINK+DKP A
Sbjct: 63 PGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122
Query: 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ +R L+ + E+ GGD +SA T +D+L E I
Sbjct: 123 NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 120
Score = 139 bits (353), Expect = 3e-39
Identities = 50/109 (45%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 565 EEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHL 624
+GEA++L F +T+GKKK+PVA CR KG L+++ FKL+R +V+++G L S+KH
Sbjct: 7 GYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHH 66
Query: 625 KEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673
K++++ IK ++CGL L++ +EF+PGD ++C+ +NKVP T W+ PGF
Sbjct: 67 KDDISVIKTGMDCGLSLDEEKVEFKPGDQVICYEENKVPTKTSWD-PGF 114
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 105 bits (263), Expect = 4e-24
Identities = 69/289 (23%), Positives = 107/289 (37%), Gaps = 64/289 (22%)
Query: 108 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG----------GITQHIGAFVV 157
P + K + GH+DHGKTTL L + + S GIT IG F
Sbjct: 13 PHMDFKNINLGIF-GHIDHGKTTLSKVL---TEIASTSAHDKLPESQKRGITIDIG-FSA 67
Query: 158 TLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV 216
++T +D PGHA + S A D+ ++VV A +G QT E + + +
Sbjct: 68 FKLENYRITLVDAPGHADLIRAVVS-AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 126
Query: 217 PIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276
PIIV I K D E I+RT
Sbjct: 127 PIIVVITKSD------------------NAGT----------------------EEIKRT 146
Query: 277 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIV 336
+ M++ + + +PISA TG VD L I+ + + M +
Sbjct: 147 E-MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYF-KMPL 204
Query: 337 ESKFD-THRGKLATALVQRGTLKKGAIV--VAGQAWAKVRSIS--RKTL 380
+ F G + T + +G +K G + + KVRSI ++++
Sbjct: 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESV 253
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 102 bits (257), Expect = 6e-23
Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 83/268 (30%)
Query: 120 IMGHVDHGKTTLLD-TLRNTSVVKS-EFG-------------GITQHIGAFVVTL----K 160
I+ HVDHGK+TL D L T + E GIT + V + K
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGIT--VKMQAVRMFYKAK 68
Query: 161 SGEQVTF--LDTPGHAAFSNMRSR------GAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
G +DTPGH FS SR GA +L++ A G+ QTV + A
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGA------LLLIDASQGIEAQTVANFWKAV 122
Query: 213 EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272
E + II INKID P+AD++R K +E++ +
Sbjct: 123 EQDLVIIPVINKIDLPSADVDRVKKQ-------IEEV---L------------------- 153
Query: 273 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332
G+ E+ A+ SA G ++ + EAIV + I K D P++
Sbjct: 154 -----------GLDPEE------AILASAKEGIGIEEILEAIVNR--IPPPKGDPQKPLK 194
Query: 333 AMIVESKFDTHRGKLATALVQRGTLKKG 360
A+I +S +D +RG +A + G +K G
Sbjct: 195 ALIFDSYYDPYRGAVAFVRIFDGEVKPG 222
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 102 bits (256), Expect = 7e-23
Identities = 80/268 (29%), Positives = 112/268 (41%), Gaps = 83/268 (30%)
Query: 120 IMGHVDHGKTTLLD-TLRNTSVVKS-EFG-------------GITQHIGAFVVTL----K 160
I+ H+DHGK+TL D ++ + E GIT I A VTL
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKAS 66
Query: 161 SGEQVTF--LDTPGHAAFSNMRSR------GAHCTDIVVLVVAADDGVMEQTVESIRMAR 212
GE +DTPGH FS SR GA +LVV A GV QT+ + A
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGA------LLVVDAGQGVEAQTLANCYTAM 120
Query: 213 EAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272
E + ++ +NKID PAAD ER +ED+ +
Sbjct: 121 EMDLEVVPVLNKIDLPAADPERVAEE-------IEDI---V------------------- 151
Query: 273 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVE 332
GI D AV SA TG V ++ E +V I + D GP++
Sbjct: 152 -----------GIDATD------AVRCSAKTGVGVQDVLERLVRD--IPPPEGDPEGPLQ 192
Query: 333 AMIVESKFDTHRGKLATALVQRGTLKKG 360
A+I++S FD + G ++ ++ GTL+KG
Sbjct: 193 ALIIDSWFDNYLGVVSLIRIKNGTLRKG 220
>1z9b_A Translation initiation factor IF-2; protein synthesis translation
intiation IF2 FMet-tRNA structure; NMR {Geobacillus
stearothermophilus}
Length = 135
Score = 86.5 bits (215), Expect = 2e-20
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 468 GDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFNTTLHPAA 527
DV GSVEAL+ R+ I+H VG ++ +D+ LAT NAI+ FN A
Sbjct: 48 ADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANA 107
Query: 528 KTSAEELGVTVKQFNVIYKLVEDVKEEINAM 558
K +AE V ++ +IY ++E+++ AM
Sbjct: 108 KRAAESEKVDIRLHRIIYNVIEEIE---AAM 135
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 89.2 bits (222), Expect = 3e-19
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 118 VTIMGHVDHGKTTLLD--TLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175
V I+G G+T+L + G + I K G + F+D +
Sbjct: 24 VAIIGTEKSGRTSLAANLGKK----------GTSSDIT-MYNNDKEGRNMVFVDAHSYPK 72
Query: 176 F-SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-IIVAINKIDKPAADIE 233
++ + + +DI VL + G+ T E I I+A+ + D + +
Sbjct: 73 TLKSLIT-ALNISDIAVLCIPPQ-GLDAHTGECIIALDLLGFKHGIIALTRSD--STHMH 128
Query: 234 RTKNMLLAQGITVEDLGG----DIQAVPISALTGTN-----VDNLTEAIER 275
+ + G D + + ++ VD L I
Sbjct: 129 A---IDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINE 176
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 84.3 bits (208), Expect = 5e-17
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 111 LMKRPPV---VTIMGHVDHGKTTLLDTL---------------RNTSVVKSEFG-GIT-- 149
LM + ++++ HVDHGK+TL D+L R T K E GIT
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK 71
Query: 150 --------QHIGAFVVTLKSGEQ-----VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196
+ V +K + +D+PGH FS+ + TD ++VV
Sbjct: 72 STAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
Query: 197 DDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNML 239
+GV QT +R A ++ +V INK+D+ +++ +K L
Sbjct: 132 IEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 82.0 bits (203), Expect = 1e-16
Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 36/234 (15%)
Query: 112 MKRPP-----VVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAFVVTLKSGEQ 164
M+ P + + G + GK++ ++ L +N S+V S++ G T + L
Sbjct: 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGP 84
Query: 165 VTFLDTPG---HAAFSNMRSRGAHCT----DIVVLVVAADDGVMEQTVESIRMAREAKVP 217
VT +DTPG +R A D +LV + E V + + +E ++P
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV--VNLFKEMEIP 142
Query: 218 IIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER-- 275
+V +NKID E K + + + + + +SAL D++ + I
Sbjct: 143 FVVVVNKIDVLGEKAEELKGLY--------ESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
Query: 276 --------TKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIM 321
+++ + + + D+ P L V + EA+ +A +
Sbjct: 195 PGDEEIPYLGDLIDGGDLVILVVPIDL-GAPKGRLIMPQVHAIREALDREAIAL 247
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus
stearothermophilus} SCOP: b.43.3.1
Length = 99
Score = 73.7 bits (182), Expect = 3e-16
Identities = 32/103 (31%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 563 YAEEVLGEANVLQMFLITDGKKKV-PVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESM 621
Y E+V+G+A V Q F ++ KV +AGC + G + +++ +L+R+ V++EG+++S+
Sbjct: 1 YEEKVIGQAEVRQTFKVS----KVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSL 56
Query: 622 KHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQ 664
K K++V + + ECGL +++ + + + GD I +V +V +
Sbjct: 57 KRYKDDVREVAQGYECGLTIKNFN-DIKEGDVIEAYVMQEVAR 98
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 79.2 bits (196), Expect = 7e-16
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 40/199 (20%)
Query: 112 MKRPPVVTI--MGHVDHGKTTLLDTLRNTSVVK--SEFG-GITQHIG-AFVVTLKSGEQ- 164
+ V I +GHVDHGKT+L L + E GI+ +G A K +
Sbjct: 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCG 62
Query: 165 --------------------VTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV-ME 202
V+F+D+PGH + M S GA D +LV+AA++
Sbjct: 63 TYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLS-GASLMDGAILVIAANEPCPQP 121
Query: 203 QTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNMLLAQGITVEDL----GGDIQAVP 257
QT E + + II+ NKID ++ + + I E + + +P
Sbjct: 122 QTKEHLMALEILGIDKIIIVQNKIDL----VDEKQAEENYEQI-KEFVKGTIAENAPIIP 176
Query: 258 ISALTGTNVDNLTEAIERT 276
ISA N+D L +AI+
Sbjct: 177 ISAHHEANIDVLLKAIQDF 195
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 78.4 bits (194), Expect = 1e-15
Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 119 TIMGHVDHGKTTLLDTLRNTSVVK--SEFG-GITQHIG---------------------- 153
+ GHVDHGKTTL L E GIT IG
Sbjct: 15 MV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73
Query: 154 AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMA 211
+ +V+F+D PGH A + M + GA D +LV+AA++ QT E +
Sbjct: 74 YCGHETEFVRRVSFIDAPGHEALMTTMLA-GASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 212 REAKVP-IIVAINKIDKPAADIERTKNMLLAQGITVEDLGG----DIQAVPISALTGTNV 266
+ II+A NKI+ +++ K + + I E + G + +PISAL G N+
Sbjct: 133 QIIGQKNIIIAQNKIEL----VDKEKALENYRQI-KEFIEGTVAENAPIIPISALHGANI 187
Query: 267 DNLTEAIERT 276
D L +AIE
Sbjct: 188 DVLVKAIEDF 197
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 78.1 bits (193), Expect = 2e-15
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 37/186 (19%)
Query: 119 TIMGHVDHGKTTLLDTLRNTSVVKSEFGG---------------------ITQHIGAFVV 157
+ GHVDHGKTTL+ + T + S+ G +
Sbjct: 13 VV-GHVDHGKTTLVQAI--TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 158 TLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAK 215
K +++F+D PGH + M S GA D +LVVAA++ QT E
Sbjct: 70 EPKFLRRISFIDAPGHEVLMATMLS-GAALMDGAILVVAANEPFPQPQTREHFVALGIIG 128
Query: 216 VP-IIVAINKIDKPAADIERTKNMLLAQGITVEDL----GGDIQAVPISALTGTNVDNLT 270
V +I+ NK+D + + + + + I + ++ +P+SAL N+D+L
Sbjct: 129 VKNLIIVQNKVDV----VSKEEALSQYRQI-KQFTKGTWAENVPIIPVSALHKINIDSLI 183
Query: 271 EAIERT 276
E IE
Sbjct: 184 EGIEEY 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 70.0 bits (171), Expect = 2e-12
Identities = 53/137 (38%), Positives = 64/137 (46%), Gaps = 43/137 (31%)
Query: 119 TIMGHVDHGKTTLLDTLRNTSVVKSEFG------------------GIT---QHIGAFVV 157
TI GHVDHGKTTL T T+V+ +G GIT H+
Sbjct: 301 TI-GHVDHGKTTL--TAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV----- 352
Query: 158 TLKSGEQVT------FLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM 210
E T +D PGHA + NM + GA D +LVVAA DG M QT E I +
Sbjct: 353 -----EYDTPTRHYAHVDCPGHADYVKNMIT-GAAQMDGAILVVAATDGPMPQTREHILL 406
Query: 211 AREAKVP-IIVAINKID 226
R+ VP IIV +NK D
Sbjct: 407 GRQVGVPYIIVFLNKCD 423
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 67.6 bits (166), Expect = 4e-12
Identities = 48/137 (35%), Positives = 61/137 (44%), Gaps = 43/137 (31%)
Query: 119 TIMGHVDHGKTTLLDTLRNTSVVKSEFG------------------GIT---QHIGAFVV 157
TI GHVDHGKTTL T T ++ G GIT H+
Sbjct: 8 TI-GHVDHGKTTL--TAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV----- 59
Query: 158 TLKSGEQVT------FLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM 210
E T D PGHA + NM + G D +LVVAA+DG M QT E + +
Sbjct: 60 -----EYSTAARHYAHTDCPGHADYVKNMIT-GTAPLDGCILVVAANDGPMPQTREHLLL 113
Query: 211 AREAKVP-IIVAINKID 226
AR+ V ++V +NK D
Sbjct: 114 ARQIGVEHVVVYVNKAD 130
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 67.8 bits (166), Expect = 5e-12
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 58/208 (27%)
Query: 120 IMGHVDHGKTTL---------------LDTLRNTS--VVKSEFG--------------GI 148
+GHVD GK+TL ++ + + K + G
Sbjct: 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGK 107
Query: 149 TQHIG-AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVME---- 202
T +G A+ T + + LD PGH + +NM + GA DI VLV++A G E
Sbjct: 108 TVEVGRAYFETEHR--RFSLLDAPGHKGYVTNMIN-GASQADIGVLVISARRGEFEAGFE 164
Query: 203 ---QTVESIRMAREAKVP-IIVAINKIDKPAAD---------IERTKNMLLAQGITVEDL 249
QT E +AR + ++V INK+D+P+ +++ L + + +
Sbjct: 165 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFL--RRVAGYNS 222
Query: 250 GGDIQAVPISALTGTNVDNLTEAIERTK 277
D++ +P+SA TG N+ + ++ +
Sbjct: 223 KTDVKYMPVSAYTG---QNVKDRVDSSV 247
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 67.3 bits (165), Expect = 5e-12
Identities = 51/207 (24%), Positives = 78/207 (37%), Gaps = 60/207 (28%)
Query: 118 VTIMGHVDHGKTTL---------------LDTLRNTSVVKSEFG---------------- 146
G+VD GK+TL L+ + S G
Sbjct: 27 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 86
Query: 147 --GITQHIGAFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVMEQ 203
GIT + A+ + + DTPGH + NM + GA D+ +++V A GV Q
Sbjct: 87 EQGITIDV-AYRYFSTAKRKFIIADTPGHEQYTRNMAT-GASTCDLAIILVDARYGVQTQ 144
Query: 204 TVESIRMAREAKVP-IIVAINKID----------KPAADIERTKNMLLAQGITVEDLGGD 252
T +A + I+VAINK+D AD + A+GI +
Sbjct: 145 TRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLK-----FAEGIAFKPT--T 197
Query: 253 IQAVPISALTGTNVDNLTEAIERTKNM 279
+ VP+SAL G NV + +++
Sbjct: 198 MAFVPMSALKGDNV------VNKSERS 218
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 66.8 bits (164), Expect = 6e-12
Identities = 52/138 (37%), Positives = 64/138 (46%), Gaps = 44/138 (31%)
Query: 119 TIMGHVDHGKTTLLDTLRNTSVVKSEFG-------------------GIT---QHIGAFV 156
TI GHVDHGKTTL T T V +E GIT H+
Sbjct: 16 TI-GHVDHGKTTL--TAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV---- 68
Query: 157 VTLKSGEQVT------FLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR 209
E T +D PGHA + NM + GA D +LVV+A DG M QT E I
Sbjct: 69 ------EYETAKRHYSHVDCPGHADYIKNMIT-GAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 210 MAREAKVP-IIVAINKID 226
+AR+ VP I+V +NK+D
Sbjct: 122 LARQVGVPYIVVFMNKVD 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 66.5 bits (163), Expect = 1e-11
Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 70/214 (32%)
Query: 120 IMGHVDHGKTTL------------------------------------LDTLRNTSVVKS 143
++GHVD GK+TL +D
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQT------NE 91
Query: 144 EFG-GITQHIG-AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV 200
E G+T I + T ++ T +D PGH F N G D+ +L V
Sbjct: 92 ERERGVTVSICTSHFSTHRA--NFTIVDAPGHRDFVPNAIM-GISQADMAILCVDCSTNA 148
Query: 201 ME-------QTVESIRMAREAKVP-IIVAINKIDKPAADIER-------TKNMLLAQGIT 245
E QT E + +A + +I+A+NK+D +R L+ G
Sbjct: 149 FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFF 208
Query: 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279
++ I VPIS +G + + + +
Sbjct: 209 EDN----INWVPISGFSG---EGVYKIEYTDEVR 235
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 64.8 bits (159), Expect = 1e-11
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 39/143 (27%)
Query: 156 VVTLKSGEQVTFLDTPG---------------HAAFSNMRSRGAHCTDIVVLVVAA---- 196
V + + Q+ FLDTPG A ++ D+++ ++ A
Sbjct: 52 VKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEE-----ADVILFMIDATEGW 106
Query: 197 ---DDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDI 253
D+ + + + + P+IV INKIDK +L + ++
Sbjct: 107 RPRDEEIYQNFI------KPLNKPVIVVINKIDKI-----GPAKNVLPLIDEIHKKHPEL 155
Query: 254 QA-VPISALTGTNVDNLTEAIER 275
VPISAL G N+D L + I +
Sbjct: 156 TEIVPISALKGANLDELVKTILK 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 65.8 bits (161), Expect = 2e-11
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 63/212 (29%)
Query: 118 VTIMGHVDHGKTTLL------------DTLRNTSVVKSEFG------------------- 146
+ ++GHVDHGK+TL+ T++ + G
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 147 GITQHIG-AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVME-- 202
G+T ++ T K T +D PGH F NM + GA D +LVV+A G E
Sbjct: 69 GVTINLTFMRFETKKY--FFTIIDAPGHRDFVKNMIT-GASQADAAILVVSAKKGEYEAG 125
Query: 203 -----QTVESIRMAREAKVP-IIVAINKIDKPAAD---------IERTKNMLLAQGITVE 247
QT E I +A+ + +IVA+NK+D +++ + + G
Sbjct: 126 MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN 185
Query: 248 DLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279
++ VP+ A +G N+ +++NM
Sbjct: 186 ----KVRFVPVVAPSGDNI------THKSENM 207
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 65.8 bits (161), Expect = 2e-11
Identities = 59/222 (26%), Positives = 80/222 (36%), Gaps = 57/222 (25%)
Query: 118 VTIMGHVDHGKTTLLD------------TLRNTSVVKSEFGGITQHIGAFVVTLK----- 160
V ++GHVD GK+T T+ +E G + + LK
Sbjct: 10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 69
Query: 161 -------------SGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGVME---- 202
QVT +D PGH F NM + G D +L++A G E
Sbjct: 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMIT-GTSQADCAILIIAGGVGEFEAGIS 128
Query: 203 ---QTVESIRMAREAKVP-IIVAINKIDKPAADIER-------TKNMLLAQGITVEDLGG 251
QT E +A V +IVA+NK+D D R T N + G +
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK---- 184
Query: 252 DIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGD 293
+ VPIS G DN+ IE T N +G E G
Sbjct: 185 TVPFVPISGWNG---DNM---IEATTNAPWYKGWEKETKAGV 220
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 66.3 bits (162), Expect = 2e-11
Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 70/214 (32%)
Query: 120 IMGHVDHGKTTL------------------------------------LDTLRNTSVVKS 143
++GHVD GK+TL +D
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQT------NE 225
Query: 144 EFG-GITQHIG-AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV 200
E G+T I + T ++ T +D PGH F N G D+ +L V
Sbjct: 226 ERERGVTVSICTSHFSTHRA--NFTIVDAPGHRDFVPNAIM-GISQADMAILCVDCSTNA 282
Query: 201 ME-------QTVESIRMAREAKVP-IIVAINKIDKPAADIER-------TKNMLLAQGIT 245
E QT E + +A + +I+A+NK+D +R L+ G
Sbjct: 283 FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFF 342
Query: 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279
++ I VPIS +G + + + +
Sbjct: 343 EDN----INWVPISGFSG---EGVYKIEYTDEVR 369
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 63.2 bits (155), Expect = 5e-11
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 37/132 (28%)
Query: 164 QVTFLDTPG--------------HAAFSNMRSRGAHCTDIVVLVVAA------DDGVMEQ 203
Q ++DTPG AA S++ ++V+ VV D+ V+ +
Sbjct: 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGD-----VELVIFVVEGTRWTPDDEMVLNK 111
Query: 204 TVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTG 263
RE K P+I+A+NK+D K LL + + VPISA TG
Sbjct: 112 -------LREGKAPVILAVNKVDNVQE-----KADLLPHLQFLASQMNFLDIVPISAETG 159
Query: 264 TNVDNLTEAIER 275
NVD + + +
Sbjct: 160 LNVDTIAAIVRK 171
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 60.0 bits (146), Expect = 2e-10
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 47/192 (24%)
Query: 116 PVVTIMGH--VDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG- 172
+ G V GK+TL+ L V + + G+T+ I + +D PG
Sbjct: 2 ATIIFAGRSNV--GKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW-----KNHKIIDMPGF 54
Query: 173 -------------------HAAFSNMRSRGAHCTDIVVLVV-----------AADDGVME 202
H N ++ D+ VLVV G +
Sbjct: 55 GFMMGLPKEVQERIKDEIVHFIEDNAKN-----IDVAVLVVDGKAAPEIIKRWEKRGEIP 109
Query: 203 QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262
VE + RE +P IVA+NK+DK E + + + ++ +PISA
Sbjct: 110 IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVF--IPISAKF 167
Query: 263 GTNVDNLTEAIE 274
G N++ L I
Sbjct: 168 GDNIERLKNRIF 179
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 61.3 bits (150), Expect = 2e-10
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 30/128 (23%)
Query: 164 QVTFLDTPG-------------HAAFSNMRSRGAHCTDIVVLVVAADDGVM---EQTVES 207
Q+ F+DTPG + + + VV VV E +
Sbjct: 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALAD-----VNAVVWVVDLRHPPTPEDELVARA 110
Query: 208 IRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
++ KVPI++ NK+D + + + A +L + + +SAL V
Sbjct: 111 LKPLV-GKVPILLVGNKLDA----AKYPEEAMKA----YHELLPEAEPRMLSALDERQVA 161
Query: 268 NLTEAIER 275
L +
Sbjct: 162 ELKADLLA 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 62.4 bits (152), Expect = 2e-10
Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 72/216 (33%)
Query: 120 IMGHVDHGKTTL------------------------------------LDTLRNTSVVKS 143
+ GHVD GK+T+ LDT +
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTT------EE 235
Query: 144 EFG-GITQHIG-AFVVTLKSGEQVTFLDTPGHAAF-SNMRSRGAHCTDIVVLVVAADDGV 200
E G+T + + K D PGH F S M + GA D VLVV +
Sbjct: 236 ERARGVTMDVASTTFESDKK--IYEIGDAPGHRDFISGMIA-GASSADFAVLVVDSSQNN 292
Query: 201 ME-------QTVESIRMAREAKVP-IIVAINKIDKPAADIER----TKNMLLAQGITVED 248
E QT E + R + I+V++NK+D + +R + ++
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIV---SDFLIKM 349
Query: 249 LG---GDIQAVPISALTGTNVDNLTEAIERTKNMLL 281
+G ++ VPISA++GTN+ I++ + L
Sbjct: 350 VGFKTSNVHFVPISAISGTNL------IQKDSSDLY 379
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 3e-10
Identities = 82/513 (15%), Positives = 147/513 (28%), Gaps = 224/513 (43%)
Query: 65 IYD-FQVII-DIIQKSGMKYMVINPTNSVADD--SNGKDV-------ERRPPADPSVLMK 113
+Y + V++ D+I+ S + T A+ + G ++ P D +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD---YLL 232
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
P+ S G+ Q + +VVT K TPG
Sbjct: 233 SIPI---------------------SCP---LIGVIQ-LAHYVVTAKLLGF-----TPG- 261
Query: 174 AAFSNMRS--RGA--HCTDIVV-LVVAADDGVMEQTVES-IRMAREAKVPIIVAINKIDK 227
+RS +GA H +V + +A D + ES R+A
Sbjct: 262 ----ELRSYLKGATGHSQGLVTAVAIAETD-----SWESFFVSVRKA------------- 299
Query: 228 PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN----MLLAQ 283
I +L G+ +A P ++L + ++ +++E + ML
Sbjct: 300 ----IT----VLFFIGVRCY------EAYPNTSLPPSILE---DSLENNEGVPSPMLSIS 342
Query: 284 GITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTH 343
+T E + + TN HL P + S +
Sbjct: 343 NLTQEQVQDYVNK--------TN--------------SHL------PAGKQVEISLVNGA 374
Query: 344 RGKLATALVQRGTLKKGAIVVAGQAWAKVRSISRKTL--INTALGTVQRTSGT------- 394
+ +VV+G ++L +N L + SG
Sbjct: 375 K----------------NLVVSG---------PPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 395 ----VKISLGF-KIN-PF---------------CPSGDVDGSVEAL-LDVFDTYT----- 427
+K S F + PF +V + + + + V+DT+
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 428 -------SALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDV 480
+ I+ V W +T + + H +LD
Sbjct: 470 VLSGSISERIVDC-IIRLPV--------KWETTTQFKAT-H---------------ILD- 503
Query: 481 FDT-YTSALCRLDIVH-----YGVGQVSATDVE 507
F S L L H GV + A ++
Sbjct: 504 FGPGGASGLGVL--THRNKDGTGVRVIVAGTLD 534
Score = 56.6 bits (136), Expect = 3e-08
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 66/279 (23%)
Query: 196 ADDGVMEQTVESIR-MAREAKVPIIVAINKIDKPAADI-ERTKNMLLAQGITVEDLGGDI 253
AD+ + SI + P+ + I+ + I E M+ T+ D G +
Sbjct: 1649 ADNHFKDTYGFSILDIVINN--PVNLTIHFGGEKGKRIRENYSAMIFE---TIVD--GKL 1701
Query: 254 QAVPISALTGTNVDNLT-----EAIERTKN----MLLAQGITVEDL--GGDIQAVPISA- 301
+ I + + T + T+ + L + EDL G I A A
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 302 --LTGTNVDNLTE--AIVAQAEIMHLKADYGGPVEAMI--VESKFDTHRGKLATALVQRG 355
L G E A+ + A++M +E+++ V +RG V R
Sbjct: 1762 HSL-G-------EYAALASLADVM--------SIESLVEVVF-----YRGMTMQVAVPRD 1800
Query: 356 TLKKGAI-VVAGQAWAKVRSISRKTLINTALGTVQRTSGTVKISLGFKINPF-CP----- 408
L + ++A S S++ L +RT V+I +N +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-----VN-YNVENQQYV 1854
Query: 409 -SGDVDGSVEALLDVFDTYTSALCRLDIVHYGVT-STDQ 445
+GD+ ++ + +V + L ++DI+ + S ++
Sbjct: 1855 AAGDLRA-LDTVTNVLN--FIKLQKIDIIELQKSLSLEE 1890
Score = 51.6 bits (123), Expect = 7e-07
Identities = 52/291 (17%), Positives = 84/291 (28%), Gaps = 104/291 (35%)
Query: 59 DRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVA--DDSNGKDVERR-------PPADPS 109
D Y F I+DI+ NP N GK + D
Sbjct: 1650 DNHFKDTYGFS-ILDIVIN--------NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 110 VLMKRPPVVTIMGHVDHGKTTLL-----DTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQ 164
+ ++ I ++ T+ L T +F TQ ++
Sbjct: 1701 LKTEK-----IFKEINEHSTSYTFRSEKGLLSAT-----QF---TQ-PALTLMEK----- 1741
Query: 165 VTFLDTPGHAAFSNMRSRGAHCTDIVV----------LVVAADDGVM--EQTVE--SIR- 209
AAF +++S+G D L A VM E VE R
Sbjct: 1742 ---------AAFEDLKSKGLIPADATFAGHSLGEYAALASLA--DVMSIESLVEVVFYRG 1790
Query: 210 MAREAKVPI---------IVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAV---- 256
M + VP ++AIN + AA + + + + + G ++ V
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVG-KRTGWLVEIVNYNV 1848
Query: 257 P-----ISALTGT--NVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPIS 300
+ G +D +T + K Q I DI + S
Sbjct: 1849 ENQQYVAA---GDLRALDTVTNVLNFIK----LQKI-------DIIELQKS 1885
Score = 47.0 bits (111), Expect = 2e-05
Identities = 81/501 (16%), Positives = 139/501 (27%), Gaps = 181/501 (36%)
Query: 292 GDIQ-AVPISALTGTNVDNL-----------TEAIVAQAE---IMHLKADYGGPVEAMIV 336
G ++ + + + L TE A E L + G V +++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 337 ESKFDTHRGKLATALV--QRGTLKKG---AIVVAGQAWAKVRSISRKTLINT---ALGTV 388
SK L L + L+ A+ + K LI A
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 389 QR--------------TSGTVKISLGFKINPFCPSGDVDGSVEALLDVFDTYTSALCRL- 433
+R G ++ I F G+ D E L D++ TY + L
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQL---VAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 434 ----DIVHYGVTSTDQWRRY---------WTCSTPTRESKHGRIYL---------IGDVD 471
+ + + +T + W P + + YL IG
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWL-ENP--SNTPDKDYLLSIPISCPLIG--- 242
Query: 472 GSVEALLDVFDTYTSALCRLDIVHYG-----------VGQ--VSATDVELAT-------- 510
++ Y +L G Q V+A +
Sbjct: 243 -----VIQ-LAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 511 LFNAIIYTF-----------NTTLHPAAKTSAEE---------LGVTVKQFNVIYKLVED 550
+ AI F NT+L P+ + E L ++ N+ + V+D
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQD 351
Query: 551 VKEEINAMLPHTYAEEVLGEA--NVLQMFLITDG-------------KKKVPVAGCRCSK 595
+ N+ LP A + + + N + +++ G K K P +G S+
Sbjct: 352 YVNKTNSHLP---AGKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAP-SGLDQSR 406
Query: 596 GVLKKNALF---KLVRRNEVL-----FEGKLESMKH---LKEEVTSIKKELECGLRLEDP 644
F KL N L F H L I K+L
Sbjct: 407 ------IPFSERKLKFSNRFLPVASPF--------HSHLLVPASDLINKDLVKN------ 446
Query: 645 SIEFEPGDTIVCFVKNKVPQF 665
++ F D ++P +
Sbjct: 447 NVSFNAKDI-------QIPVY 460
Score = 34.6 bits (79), Expect = 0.11
Identities = 28/180 (15%), Positives = 45/180 (25%), Gaps = 71/180 (39%)
Query: 479 DVFDTYTSALCRLDIVH----YGVGQVSATDV------ELATLF----------NAIIYT 518
DV++ R D H YG S D+ L F N
Sbjct: 1644 DVWN-------RAD-NHFKDTYGF---SILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 519 FNTTLHPAAKTSAEEL--GVTVKQFNVIYKLVEDVKEEIN-------AMLPHTYAE-EVL 568
F T K E++ + + + K ++ A+ A E L
Sbjct: 1693 FETI--VDGKLKTEKIFKEINEHSTSYTF---RSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 569 GEANVLQMFLITDGKKKVPVAG---------CRCSKGVLKKNALFKLVR-RNEVLFEGKL 618
++ AG V+ +L ++V R G
Sbjct: 1748 KSKGLIP--------ADATFAGHSLGEYAALA-SLADVMSIESLVEVVFYR------GMT 1792
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 59.0 bits (143), Expect = 3e-10
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 33/179 (18%)
Query: 127 GKTTLLDTLRNTSV------VKSEFGGITQHIGAFVVTLKSGE------QVTFLDTPGHA 174
GKTT L + + + S + + + L GE + PG
Sbjct: 26 GKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85
Query: 175 AFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE---------AKVPIIVAINKI 225
++ R D +V V + + ES+R RE VPI++ +NK
Sbjct: 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145
Query: 226 DKP-AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQ 283
D P A +E + ++ D G + A G + E ++ ++LA+
Sbjct: 146 DLPDALPVEMVRAVV--------DPEGKFPVLEAVATEG---KGVFETLKEVSRLVLAR 193
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 58.6 bits (143), Expect = 3e-09
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 162 GEQVTFLDTPG----------HAAFSNMRSRGA--HCTDIVVLVVAADDGVMEQTVESIR 209
++ +DT G +S +R+ A ++V +V+ ++G++EQ
Sbjct: 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS-EVVAVVLDGEEGIIEQDKRIAG 280
Query: 210 MAREAKVPIIVAINK---IDKPAADIERTKNMLLAQGITVEDLG--GDIQAVPISALTGT 264
A EA +++ +NK +DK + ++ + + + + +SALT
Sbjct: 281 YAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR------DHFQFLDYAPILFMSALTKK 334
Query: 265 NVDNLTEAIER 275
+ L AI +
Sbjct: 335 RIHTLMPAIIK 345
Score = 46.7 bits (112), Expect = 2e-05
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVE 247
D+++ +V +GV E ++ K P+++A+NK+D +
Sbjct: 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN-----------IYD 132
Query: 248 --DLG-GDIQAVPISALTGTNVDNLTEAI 273
LG G+ PIS G + +L +A+
Sbjct: 133 FYSLGFGEP--YPISGTHGLGLGDLLDAV 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 58.6 bits (142), Expect = 4e-09
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 120 IMGHVDHGKTTLLDTL----------------RNTSVVKSEFGGITQHIGAFVVT----- 158
I+ H D GKTTL + L + S++ + + G V T
Sbjct: 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF 77
Query: 159 LKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
+ LDTPGHA F+ R D ++V+ A GV +T++ + + R PI
Sbjct: 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI 137
Query: 219 IVAINKIDKPAAD 231
+ INK+D+
Sbjct: 138 MTFINKMDRDTRP 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 57.1 bits (139), Expect = 8e-09
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 162 GEQVTFLDTPG-----------HAAFSNMRSRGA--HCTDIVVLVVAADDGVMEQTVESI 208
G + F+DT G +SN R + D+VV+V+ A G+ Q
Sbjct: 227 GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA-DVVVIVLDATQGITRQDQRMA 285
Query: 209 RMAREAKVPIIVAINK---IDKPAADIERTKNMLLAQGITVEDLG--GDIQAVPISALTG 263
+ +V NK + + + E L + SA G
Sbjct: 286 GLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR------EKLYFIDYSPLIFTSADKG 339
Query: 264 TNVDNLTEAIER 275
N+D + +A+
Sbjct: 340 WNIDRMIDAMNL 351
Score = 47.1 bits (113), Expect = 1e-05
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVE 247
D+V+ VV G+ ++ R++ V I+ NK + K L + G
Sbjct: 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGF--- 139
Query: 248 DLGGDIQAVPISALTGTNVDNLTEAI 273
G+ +P+SA N+D + E I
Sbjct: 140 ---GEP--IPVSAEHNINLDTMLETI 160
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 57.4 bits (139), Expect = 9e-09
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 120 IMGHVDHGKTTLLDTL----------------RNTSVVKSEFGGITQHIGAFVVT----- 158
I+ H D GKTT+ + + + KS++ + + G + T
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 159 LKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
V LDTPGH FS R D ++V+ A GV ++T + + + R PI
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI 137
Query: 219 IVAINKIDKPAAD 231
+ +NK+D+ D
Sbjct: 138 LTFMNKLDRDIRD 150
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 57.2 bits (139), Expect = 1e-08
Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 27/152 (17%)
Query: 112 MKRPPV-----VTIMGHVDHGKTT-----LLDTLRNTSVVKSEFG-------------GI 148
M V ++GH GKTT L T + E G
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRT 60
Query: 149 TQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVES 207
T + V L G +V LD PG+ F D ++ V+A+ GV T +
Sbjct: 61 T--VRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERA 118
Query: 208 IRMAREAKVPIIVAINKIDKPAADIERTKNML 239
+A +P +V + K+DK D L
Sbjct: 119 WTVAERLGLPRMVVVTKLDK-GGDYYALLEDL 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 79/613 (12%), Positives = 165/613 (26%), Gaps = 199/613 (32%)
Query: 5 TDDHLYEVMMY--VDNSVNYDRPSSVIYDFQVIIDII-QKSDHLYEVMMYVDNSVNYDRP 61
D ++ +D+ + S + + K + + + +V+ + +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQ--KFVEEVLRIN-- 90
Query: 62 SSVIYDF---QVIIDIIQKSGMKYMVINPTNSVADDSN--GK-DVERRPPADP--SVLMK 113
Y F + + Q S M M I + + +D+ K +V R P L++
Sbjct: 91 ----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 114 -RP-PVVTIMGHVDHGKTTL-LDTLRNTSVVKSEFGGITQHIGAFVVTL---KSGEQV-- 165
RP V I G + GKT + LD + V + + F + L S E V
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDF-----KIFWLNLKNCNSPETVLE 200
Query: 166 ------TFLDTPGHAAFSNMRS-------------------RGAHCTDIV---------- 190
+D + + + +C ++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 191 -------VLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQ- 242
+L+ V + A ++++ E K+ LL +
Sbjct: 261 AFNLSCKILLTTRFKQVTD--------FLSAATTTHISLDHHSMTLTPDE-VKS-LLLKY 310
Query: 243 -GITVEDLGGDIQAVPIS----ALTGT---------------NVDNLTEAIERT------ 276
+DL + + + ++ N D LT IE +
Sbjct: 311 LDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 277 ---KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAE-------------- 319
+ M + I + +S + + + +V +
Sbjct: 369 AEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 320 -IMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRSISRK 378
I + + +E+++ HR ++V + K + + +
Sbjct: 427 SIPSIYLELKVK-----LENEYALHR-----SIVDHYNIPKTF-----DSDDLIPPYLDQ 471
Query: 379 TLIN------TALGTVQRTSGTVKISLGF-----KINPFCPSGDVDGSVEALLDVFDTYT 427
+ + +R + + L F KI + + GS+ L Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY- 530
Query: 428 SALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYLIGDVDGSVEALLDVFDTYTSA 487
+ Y + P E V A+LD
Sbjct: 531 -------------------KPYICDNDPKYERL-------------VNAILDFLPKIEEN 558
Query: 488 LCR---LDIVHYG 497
L D++
Sbjct: 559 LICSKYTDLLRIA 571
Score = 52.5 bits (125), Expect = 4e-07
Identities = 70/448 (15%), Positives = 144/448 (32%), Gaps = 119/448 (26%)
Query: 246 VEDLG-GDIQAVPISALTGTNVDNLTE---AIERTKNMLLAQGITVEDLGGDIQAVPISA 301
V++ D+Q +P S L+ +D++ A+ T + T+ ++ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEE 85
Query: 302 LTGTNVDNLTEAIVAQAEIMHLKAD-YGGPVEAMI----VESKFDTHRG----KLATALV 352
+ N L I + + Y + + V +K++ R KL AL+
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 353 QRGTLKKGAIVV------AGQAWAKVRSISRKTLINTALGTVQRTSGTVKISLGFKINPF 406
+ L+ V+ +G+ W + S V+ + FKI F
Sbjct: 146 E---LRPAKNVLIDGVLGSGKTW----------VALDVC-----LSYKVQCKMDFKI--F 185
Query: 407 -CPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIY 465
+ + S E +L++ L I + +D + + R
Sbjct: 186 WLNLKNCN-SPETVLEMLQK----LLY-QIDPNWTSRSDH-----SSNIKLR-------- 226
Query: 466 LIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIYTFN---TT 522
I + + LL Y + L L +V+ A +NA FN
Sbjct: 227 -IHSIQAELRRLL-KSKPYENCLLVLL------------NVQNAKAWNA----FNLSCKI 268
Query: 523 LHPAAKTSAEELGVTVKQFNVIYKLVEDVK-----EEINAMLPHTYAEEVLGEANVLQMF 577
L +T + V L + + L + +L L
Sbjct: 269 L------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDC- 313
Query: 578 LITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMKHLK-EEVTSIKKELE 636
+ +P + L ++ R+ + ++ KH+ +++T+I +E
Sbjct: 314 ----RPQDLPREVLTTNPRRL---SIIAESIRDGL---ATWDNWKHVNCDKLTTI---IE 360
Query: 637 CGLRLEDPSIEFEPGDTIVCFVKN-KVP 663
L + +P+ + D + F + +P
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 43.7 bits (102), Expect = 2e-04
Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 57/254 (22%)
Query: 409 SGDVDGSVEALLDVF-DTYTSAL-CRLDIVHYGVTSTDQWRRYWTCSTPTRESKHGRIYL 466
+G+ + +L VF D + C+ D+ D + + E H I +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCK-DV-------QDMPKSILS----KEEIDH--IIM 56
Query: 467 IGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELATLFNAIIY-----TFNT 521
D L + ++V V +V + + L + I + T
Sbjct: 57 SKDAVSGTLRLFWTLLSKQE-----EMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMT 109
Query: 522 TLHPAAKTSAEELGVTVKQFNV-IYKLVEDVKEEINAMLPHTY--------------AEE 566
++ + ++NV + +++ + + P A +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 567 VLGEANVL-----QMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESM 621
V V ++F + C + VL+ L KL+ + + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKN-------CNSPETVLEM--LQKLLYQIDPNWTSRSDHS 220
Query: 622 KHLKEEVTSIKKEL 635
++K + SI+ EL
Sbjct: 221 SNIKLRIHSIQAEL 234
Score = 39.1 bits (90), Expect = 0.006
Identities = 17/120 (14%), Positives = 46/120 (38%), Gaps = 35/120 (29%)
Query: 8 HLYEV----------MMYVD----------NSVNYDRPSSVIYDFQVII---DIIQKSDH 44
HL + M+++D +S ++ S++ Q + I +D
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 45 LYEVMM--YVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVER 102
YE ++ +D + + + + D+++ + M ++ ++++ K V+R
Sbjct: 540 KYERLVNAILDFLPKIE-ENLICSKY---TDLLRIALM-----AEDEAIFEEAH-KQVQR 589
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 52.8 bits (127), Expect = 5e-08
Identities = 43/220 (19%), Positives = 63/220 (28%), Gaps = 33/220 (15%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
P + I G + GKT+LL L SV G VT +D PG
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPG 64
Query: 173 HAAFSNMRSR----GAHCTDIVVLVV--AADDGVMEQTVE-------SIRMAREAKVPII 219
H S A ++ +V D + T E + E + I+
Sbjct: 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124
Query: 220 VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPIS---ALTGTNVDNLTEAIERT 276
+A NK + A I + L +IQ V +L E
Sbjct: 125 IACNKSELFTA--------RPPSKIK-DALESEIQKVIERRKKSLNEVERKINEEDYAEN 175
Query: 277 KNMLLAQG--ITVEDLGGDIQAVPISALTGTNVDNLTEAI 314
+L +L + A S + E I
Sbjct: 176 TLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWREWI 214
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 54.5 bits (131), Expect = 5e-08
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 31/194 (15%)
Query: 96 NGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 155
++V + P V+ P V I GH + GK+TLL L + + T+ I
Sbjct: 152 KAREVLKDLP----VVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG 207
Query: 156 VVTLKSGEQVTFLDTPG--HAAFSNMRS-------RGAHCTDIVVLVVAA----DDGVME 202
+ +DTPG S + ++++ + + E
Sbjct: 208 QFEDG-YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEE 266
Query: 203 QTV--ESIRMAREAKVPIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPIS 259
Q E + +P +V INKID + I+R + + +G+ + IS
Sbjct: 267 QIHLFEEVH-GEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNP---------IKIS 316
Query: 260 ALTGTNVDNLTEAI 273
AL GT +D + E I
Sbjct: 317 ALKGTGIDLVKEEI 330
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 54.2 bits (131), Expect = 6e-08
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 55/193 (28%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV-----VTL--------KSG 162
P + I+G+ + GKT+L ++L + V T+ +
Sbjct: 180 PSIGIVGYTNSGKTSLFNSLTGLTQ--------------KVDTKLFTTMSPKRYAIPINN 225
Query: 163 EQVTFLDTPG------H---AAFSNMRS-----RGAHCTDIVVLVV---AADDGVMEQTV 205
++ +DT G AF + + D ++LV+ +++ ++E
Sbjct: 226 RKIMLVDTVGFIRGIPPQIVDAF---FVTLSEAKYS---DALILVIDSTFSENLLIETLQ 279
Query: 206 ESIRMARE---AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALT 262
S + RE + PI+V +NKID + + K + L + ++ E +PISAL
Sbjct: 280 SSFEILREIGVSGKPILVTLNKID--KINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337
Query: 263 GTNVDNLTEAIER 275
TN++ L + I +
Sbjct: 338 RTNLELLRDKIYQ 350
Score = 37.2 bits (87), Expect = 0.013
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN-VDNLTEAIERTKNMLLAQGITVED 289
D ++N+L+ + ++ +I L N +D + + K + L + ++ E
Sbjct: 266 DSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING--DLYKKLDLVEKLSKEL 323
Query: 290 LGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLK 324
+PISAL TN++ L + I A + L+
Sbjct: 324 YSPIFDVIPISALKRTNLELLRDKIYQLATQLSLE 358
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 53.6 bits (128), Expect = 1e-07
Identities = 19/185 (10%), Positives = 52/185 (28%), Gaps = 24/185 (12%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-----VVKSEFGGITQHIGAFVVTLKSGEQVTF 167
V + G GK++ ++TLR K+ +T + + V F
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVF 124
Query: 168 LDTPGHAAFS---NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
D PG + + + + ++ + + ++ + K K
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTK 184
Query: 225 IDKPAADIERTKNMLLAQGITVEDLGGDIQ--------------AVPISALTGTNVDNLT 270
+D + + + ++D+ + + + + L
Sbjct: 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 244
Query: 271 EAIER 275
+ +
Sbjct: 245 DKLIS 249
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 49.3 bits (118), Expect = 6e-07
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 18/131 (13%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
P + I G + GKT+LL L SV G VT +D PG
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPG 100
Query: 173 HAAFSNMRSR----GAHCTDIVVLVV--AADDGVMEQTVE-------SIRMAREAKVPII 219
H S A ++ +V D + T E + E + I+
Sbjct: 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160
Query: 220 VAINKIDKPAA 230
+A NK + A
Sbjct: 161 IACNKSELFTA 171
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 49.5 bits (119), Expect = 2e-06
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 188 DIVVLVVAADDGVMEQTVESIR--MAREAKVPIIVAINKIDKPAADIERTKNMLLAQGIT 245
D+++ ++ ++ + IR A + NK+D+ A + + G
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTE 373
Query: 246 VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVED 289
V + ISAL G +D L + + +++ E
Sbjct: 374 V---------IGISALNGDGIDTLKQHM---GDLVKNLDKLHEA 405
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 48.2 bits (115), Expect = 3e-06
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--- 172
+ + G + GK++ ++ + +V + T+++ K + +DTPG
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-LNKYQIIDTPGLLD 88
Query: 173 HAAFS----NMRSRGA--HCTDIVVLVV--AADDG--VMEQTVE--SIRMAREAKVPIIV 220
A + M + A H +++ ++ + G + EQ SI+ + + I++
Sbjct: 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK-SVFSNKSIVI 147
Query: 221 AINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
NKIDK D N LL + I +++ I+ S LTG V+
Sbjct: 148 GFNKIDKCNMDSLSIDNKLLIKQIL-DNVKNPIKFSSFSTLTGVGVEQAKITA 199
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 48.3 bits (116), Expect = 5e-06
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAK-VPIIVAINKIDKPAADIERTKNMLLAQGITV 246
D+V+L + D T + + K P+I+ +NKID ++
Sbjct: 305 DLVLLTI---DAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEK----------QLITSL 351
Query: 247 EDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVED 289
E Q V +A +D+L AI ++ + D
Sbjct: 352 EYPENITQIVHTAAAQKQGIDSLETAI---LEIVQTGKVQAAD 391
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 46.0 bits (110), Expect = 6e-06
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 16/89 (17%)
Query: 188 DIVVLVVAADDGVME---QTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGI 244
D V+ +V + AK+PI V NK D +
Sbjct: 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD-------------ITGET 131
Query: 245 TVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ +SA TG VD L +
Sbjct: 132 LGMSEVNGHALIRLSARTGEGVDVLRNHL 160
Score = 32.1 bits (74), Expect = 0.31
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 281 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQA 318
+ + +SA TG VD L +
Sbjct: 127 ITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 44.8 bits (107), Expect = 1e-05
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVE 247
++V+ V + + E R P+I+ K+D P ++
Sbjct: 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY-----------LGP 129
Query: 248 --DLG-GDIQAVPISALTGTNVDNLTEAI 273
LG GD +P S+ ++ L EAI
Sbjct: 130 LYGLGFGDP--IPTSSEHARGLEELLEAI 156
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 44.7 bits (106), Expect = 3e-05
Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 33/217 (15%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DT 170
V +G D GKT L L ++ + + + + + + D
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDL 61
Query: 171 PGHAAFSNMRSRG----AHCTDIVVLVV--AADDGVMEQTVE------SIRMAREAKVPI 218
PGH ++R + VV VV AA ++ E MA + +
Sbjct: 62 PGH---ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL 118
Query: 219 IVAINKIDKP-AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277
++A NK D A + + L + T+ ++ S L ++ +
Sbjct: 119 LIACNKQDIAMAKSAKLIQQQLEKELNTLR----VTRSAAPSTLDSSSTAPAQLGKK--- 171
Query: 278 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 314
+ L ++ + SA G D + I
Sbjct: 172 ----GKEFEFSQLPLKVEFLECSAKGG-RGDTGSADI 203
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAK-VPIIVAINKIDKPAADIERTKNMLLAQGITV 246
DIV+ V+ D E ++ K +V INK+D E L +
Sbjct: 325 DIVLFVL---DASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHM 381
Query: 247 EDLGGDIQAVPISALTGTNVDNLTEAIER 275
V ISAL G ++ L E+I R
Sbjct: 382 ---------VKISALKGEGLEKLEESIYR 401
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 44.5 bits (106), Expect = 9e-05
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 217 PIIVAINKIDKPAAD-IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
P +VA+NK+D + ++ + L +G+ V +P+SALTG + L EA+
Sbjct: 271 PSLVALNKVDLLEEEAVKALADALAREGLAV---------LPVSALTGAGLPALKEAL 319
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 42.9 bits (101), Expect = 3e-04
Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 146 GGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQT 204
GG +Q ++ ++ V ++T G + A D + + A G Q
Sbjct: 131 GGASQRARELMLLCEAAGYDVVIVETVG---VGQSETEVARMVDCFISLQIAGGGDDLQG 187
Query: 205 VESIRMAREAKVPIIVAINKIDKP-AADIERTKNMLLA--QGITVEDLGGDIQAVPISAL 261
++ M +V ++ INK D ++ ++M + + + + + SAL
Sbjct: 188 IKKGLM----EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSAL 243
Query: 262 TGTNVDNLTEAIERTKNMLLAQG 284
+D + AI K L A G
Sbjct: 244 EKRGIDEIWHAIIDFKTALTASG 266
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 42.4 bits (100), Expect = 3e-04
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 146 GGITQHIGAFVVTLK-SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQT 204
GG+ ++ + +G V ++T G + A TD ++++ G Q
Sbjct: 130 GGVAAKTRETMLLCEAAGFDVILVETVG---VGQSETAVADLTDFFLVLMLPGAGDELQG 186
Query: 205 VES--IRMAREAKVPIIVAINKIDKPAADI--ERTKNMLLA--QGITVEDLGGDIQAVPI 258
++ +A ++A+NK D + + A +T V I
Sbjct: 187 IKKGIFELAD------MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTI 240
Query: 259 SALTGTNVDNLTEAIERTKNMLLAQG 284
S L G +D+L IE ++ L A G
Sbjct: 241 SGLHGKGLDSLWSRIEDHRSKLTATG 266
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 42.2 bits (100), Expect = 4e-04
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 214 AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ P I+ NK+D P A E + E L D PISA+T + L +
Sbjct: 273 TERPQIIVANKMDMPEAA-ENLEAF-------KEKLTDDYPVFPISAVTREGLRELLFEV 324
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 287 VEDLGGDIQAVPISALTGTNVDNLTEAI 314
E L D PISA+T + L +
Sbjct: 297 KEKLTDDYPVFPISAVTREGLRELLFEV 324
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 42.3 bits (99), Expect = 4e-04
Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 27/192 (14%)
Query: 98 KDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-------FGGITQ 150
+ + +K V ++G GKT+LL L + E
Sbjct: 28 EARSKGEALVHLQEIK----VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA 83
Query: 151 HIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRS---RGAHCTDIVVLVVAADDGVMEQTV 205
+ ++ F D G + +++L D +
Sbjct: 84 PNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY-MLLLDSRTDSNK-HYWL 141
Query: 206 ESIRMAREAKVPIIVAINKIDK-PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264
I K P+IV +NKID+ P+ +IE+ K I + + IS G
Sbjct: 142 RHIE-KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI-------ENRFHRISCKNGD 193
Query: 265 NVDNLTEAIERT 276
V+++ ++++
Sbjct: 194 GVESIAKSLKSA 205
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 268 NL---TEAIERTKNMLLA---------QGITV------EDLGGDIQAVPISALTGTNVDN 309
+L ++ E K +++A +GI++ LG +PI A +
Sbjct: 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG--CSVIPIQAHKNIGIPA 156
Query: 310 LTEAIVAQAE-IMHLKADYGGPVEAMI 335
L ++++ ++ I LK + ++
Sbjct: 157 LQQSLLHCSQKIKPLKLSLSVAAQQIL 183
Score = 36.9 bits (86), Expect = 0.014
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 212 REAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTN 265
E P++VA+N +D + +GI++ LG +PI A
Sbjct: 107 FELGKPVVVALNMMD-----------IAEHRGISIDTEKLESLLG--CSVIPIQAHKNIG 153
Query: 266 VDNLTEAIERT 276
+ L +++
Sbjct: 154 IPALQQSLLHC 164
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 39.2 bits (92), Expect = 0.002
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L VV + IG+ V + + D G + + +
Sbjct: 28 GKTTILYQFSMNEVVH-----TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T+ V++VV + D + T E + +M K +++ NK D + L
Sbjct: 83 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
I ALTG + L + +E
Sbjct: 143 KLTSIK----DHQWHIQACCALTG---EGLCQGLE 170
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 213 EAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNV 266
E +++A+NK+D + + GI + + LG ++ VP+SA +
Sbjct: 110 EMGANLLLALNKMD-----------LAKSLGIEIDVDKLEKILG--VKVVPLSAAKKMGI 156
Query: 267 DNLTEAIERTKNMLLAQGITVEDLGGDIQAV 297
+ L +AI I + I+ +
Sbjct: 157 EELKKAISIAVKDKKTAEIKYPNFEPYIKKI 187
Score = 31.8 bits (73), Expect = 0.46
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 20/70 (28%)
Query: 268 NL---TEAIERTKNMLLA---------QGITV------EDLGGDIQAVPISALTGTNVDN 309
NL + +E N+LLA GI + + LG ++ VP+SA ++
Sbjct: 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVVPLSAAKKMGIEE 158
Query: 310 LTEAIVAQAE 319
L +AI +
Sbjct: 159 LKKAISIAVK 168
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 40.6 bits (96), Expect = 0.002
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 59/173 (34%)
Query: 120 IMGHVDHGKTTLLDTLRNTSVVKSE----FGGITQHIG---------------------- 153
IM H+D GKTT +E + G IG
Sbjct: 15 IMAHIDAGKTTT-----------TERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 154 --AFVVTLKSGEQVTFLDTPGHAAFS-----NMRSRGAHCTDIVVLVVAADDGVMEQTVE 206
A G +V +DTPGH F+ ++R D V V+ A GV QT E
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLR-----VLDGAVTVLDAQSGVEPQT-E 117
Query: 207 SI-RMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPI 258
++ R A VP IV +NK+DK A+ E + + L + L + A PI
Sbjct: 118 TVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTL------HDRLQAN--AAPI 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 39.1 bits (92), Expect = 0.002
Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 25/166 (15%)
Query: 127 GKTTLLDTL-RNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------A 174
GK++ L+TL S+ + S+ G TQ I F V + +D PG+
Sbjct: 38 GKSSALNTLTNQKSLARTSKTPGRTQLINLFEV----ADGKRLVDLPGYGYAEVPEEMKR 93
Query: 175 AFSNM-----RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
+ R +V+++ + + + I A ++ + ++V + K DK A
Sbjct: 94 KWQRALGEYLEKR--QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ R + + + V GD+Q S+L VD L + ++
Sbjct: 152 SG-ARKAQLNMVRE-AVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 39.1 bits (92), Expect = 0.002
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 20/159 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRSRGA 184
GKTTLL L+N + + L G + F D GH +
Sbjct: 35 GKTTLLHMLKNDRLAT-----LQPTWHPTSEELAIG-NIKFTTFDLGGHIQARRLWKDYF 88
Query: 185 HCTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNM 238
+ +V +V AAD ++ + + VP ++ NKID P A ++
Sbjct: 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSA 148
Query: 239 LLAQGITVEDLGGDIQAV---PISALTGTNVDNLTEAIE 274
L T + V S + + EA +
Sbjct: 149 LGLLNTTGSQRIEGQRPVEVFMCSVVMR---NGYLEAFQ 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 40.2 bits (95), Expect = 0.002
Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 120 IMGHVDHGKTTLLDTLRNTSVVKSE----FGGITQHIG---------------------- 153
I H+D GKTT +E + G IG
Sbjct: 17 IAAHIDAGKTTT-----------TERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI 65
Query: 154 --AFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESI-RM 210
A ++ +DTPGH F+ R D ++V + GV Q+ E++ R
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQ 124
Query: 211 AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPI 258
A + KVP I NK+DK AD+ + E LG + V +
Sbjct: 125 AEKYKVPRIAFANKMDKTGADLWLVIRTM------QERLGA--RPVVM 164
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 38.8 bits (91), Expect = 0.002
Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L L+ VV IG V TL ++ D G +
Sbjct: 30 GKTTILYRLQIGEVVT-----TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYA 84
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T V+ VV + D M + + M +E ++V NK D+P A L
Sbjct: 85 DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL 144
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIERTK 277
+ V SA+ G + L + I+ +
Sbjct: 145 NLVELK----DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 39.8 bits (93), Expect = 0.002
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 146 GGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQT 204
GG+T+ VV L++ V ++T G A+ D VL+ A G Q
Sbjct: 154 GGVTRATRETVVLLEAAGFDVILIETVG---VGQSEVAVANMVDTFVLLTLARTGDQLQG 210
Query: 205 VESIRMAREAKVPIIVAINKIDKP-AADIERTKNMLLA--QGITVEDLGGDIQAVPISAL 261
++ + ++ IV +NK D + L A + I + + +SA+
Sbjct: 211 IKKGVL----ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAV 266
Query: 262 TGTNVDNLTEAIERTKNMLLAQG 284
G + L + +ER + +L G
Sbjct: 267 EGRGLAELWDTVERHRQVLTGAG 289
Score = 28.3 bits (63), Expect = 9.6
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 199 GVMEQTVESIRMAREAKVPII----VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254
GV T E++ + A +I V + + + A++ T +L G +Q
Sbjct: 155 GVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLAR-----TGDQLQ 209
Query: 255 AVPISALTGTNV--------DNLTEAIERTKNMLLA--QGITVEDLGGDIQAVPISALTG 304
+ L ++ ++ EA L A + I + + +SA+ G
Sbjct: 210 GIKKGVLELADIVVVNKADGEHHKEA-RLAARELSAAIRLIYPREALWRPPVLTMSAVEG 268
Query: 305 TNVDNLTEAIVAQAEIM 321
+ L + + +++
Sbjct: 269 RGLAELWDTVERHRQVL 285
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 38.3 bits (90), Expect = 0.002
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L L+ +V IG V T++ T D G +
Sbjct: 12 GKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 66
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T ++ VV + D + + E + RM E ++V NK D P A + + L
Sbjct: 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 126
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
+ + A +G D L E ++
Sbjct: 127 GLHSLR----HRNWYIQATCATSG---DGLYEGLD 154
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 39.2 bits (92), Expect = 0.003
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 60/183 (32%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAF--V-VTLKSG------EQVTFLDTPGH---A 174
GKTTL + L T G Q +G + V V K G QVT +D PG
Sbjct: 15 GKTTLFNQL--T--------GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 175 AFSNMRS------RGAHCT---DIVVLVVAADDGVMEQ----TVESIRMAREAKVPIIVA 221
S+ S + D+++ VV D +E+ T++ + + +P IVA
Sbjct: 65 TISSQTSLDEQIACHYILSGDADLLINVV--DASNLERNLYLTLQLLEL----GIPCIVA 118
Query: 222 INKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNVDNLTEAIER 275
+N +D + Q I + LG +P+ + G ++ L AI+R
Sbjct: 119 LNMLD-----------IAEKQNIRIEIDALSARLG--CPVIPLVSTRGRGIEALKLAIDR 165
Query: 276 TKN 278
K
Sbjct: 166 YKA 168
Score = 36.5 bits (85), Expect = 0.017
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 21/89 (23%)
Query: 268 NL---TEAIERTKNMLLA---------QGITV------EDLGGDIQAVPISALTGTNVDN 309
NL + +E ++A Q I + LG +P+ + G ++
Sbjct: 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG--CPVIPLVSTRGRGIEA 158
Query: 310 LTEAIV-AQAEIMHLKADYGGPVEAMIVE 337
L AI +A Y P+
Sbjct: 159 LKLAIDRYKANENVELVHYAQPLLNEADS 187
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 39.2 bits (92), Expect = 0.003
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 55/176 (31%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAF--------VVTLKSGEQVTFLDTPGH---AA 175
GKT+L + + T G Q +G + +K + + D PG +
Sbjct: 15 GKTSLFNLI--T--------GHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 176 FSN--MRSRGAHCT---DIVVLVVAADDGVMEQ----TVESIRMAREAKVPIIVAINKID 226
+S +R + D ++ VV D +E+ T + I E +P+ +A+N ID
Sbjct: 65 YSPEAKVARDYLLSQRADSILNVV--DATNLERNLYLTTQLI----ETGIPVTIALNMID 118
Query: 227 KPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNVDNLTEAIERT 276
+L QG + LG + V SAL T VD + + T
Sbjct: 119 -----------VLDGQGKKINVDKLSYHLG--VPVVATSALKQTGVDQVVKKAAHT 161
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 38.8 bits (91), Expect = 0.003
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 26/189 (13%)
Query: 127 GKTTLLDTL-RNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------A 174
GK+T ++ L + S+ G TQHI F V + +D PG+ A
Sbjct: 41 GKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100
Query: 175 AFSNM-----RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK-P 228
+ + ++R ++L++ A + E I PI + K DK
Sbjct: 101 HWEQLLSSYLQTR--PQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158
Query: 229 AADIERTKNMLLAQ--GITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGIT 286
+ G + SAL T +D+ IE L
Sbjct: 159 RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES----WLRPAAA 214
Query: 287 VEDLGGDIQ 295
ED +
Sbjct: 215 DEDHAAVAE 223
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 38.8 bits (91), Expect = 0.003
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 24/90 (26%)
Query: 268 NL---TEAIERTKNMLLA---------QGITV------EDLGGDIQAVPISALTGTNVDN 309
+L E +E K ++LA G+ + + LG I V S++TG ++
Sbjct: 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--IPVVFTSSVTGEGLEE 156
Query: 310 LTEAIVAQAE----IMHLKADYGGPVEAMI 335
L E IV A+ + + DYG VE+ I
Sbjct: 157 LKEKIVEYAQKNTILHRMILDYGEKVESEI 186
Score = 36.9 bits (86), Expect = 0.016
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 213 EAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNV 266
E + +I+A+ ID G+ + + LG I V S++TG +
Sbjct: 108 EMEKKVILAMTAID-----------EAKKTGMKIDRYELQKHLG--IPVVFTSSVTGEGL 154
Query: 267 DNLTEAIERT 276
+ L E I
Sbjct: 155 EELKEKIVEY 164
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 38.4 bits (90), Expect = 0.003
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 25/164 (15%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRSRGA 184
GKTTLL L++ + + + L +TF D GH +
Sbjct: 37 GKTTLLHMLKDDRLGQ-----HVPTLHPTSEELTIA-GMTFTTFDLGGHIQARRVWKNYL 90
Query: 185 HCTDIVVLVV-AADDGVMEQT-VESIRMARE---AKVPIIVAINKIDKP-AADIERTKNM 238
+ +V +V AD + ++ E + + A VPI++ NKID+P A ER + M
Sbjct: 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 150
Query: 239 LLAQGITVEDLGGDIQAV--------PISALTGTNVDNLTEAIE 274
G T ++ + S L E
Sbjct: 151 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR---QGYGEGFR 191
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 37.9 bits (89), Expect = 0.003
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Query: 213 EAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNV 266
E +++A+NK+D + + GI + + LG ++ VP+SA +
Sbjct: 106 EMGANLLLALNKMD-----------LAKSLGIEIDVDKLEKILG--VKVVPLSAAKKMGI 152
Query: 267 DNLTEAIERT 276
+ L +AI
Sbjct: 153 EELKKAISIA 162
Score = 31.3 bits (72), Expect = 0.47
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 20/70 (28%)
Query: 268 NL---TEAIERTKNMLLA---------QGITV------EDLGGDIQAVPISALTGTNVDN 309
NL + +E N+LLA GI + + LG ++ VP+SA ++
Sbjct: 97 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVVPLSAAKKMGIEE 154
Query: 310 LTEAIVAQAE 319
L +AI +
Sbjct: 155 LKKAISIAVK 164
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.0 bits (89), Expect = 0.004
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L L+ +V IG V T++ T D G +
Sbjct: 41 GKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQ 95
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T ++ VV + D ++++ + + +M +E ++V NK D P A + + L
Sbjct: 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
Q + A G L + ++
Sbjct: 156 GLQHLR----SRTWYVQATCATQG---TGLYDGLD 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 39.1 bits (91), Expect = 0.004
Identities = 23/143 (16%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 146 GGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQT 204
GG+T+ ++ + + ++T G A D+ VL++ G Q
Sbjct: 149 GGVTRTTNEAILLCEGAGYDIILIETVG---VGQSEFAVADMVDMFVLLLPPAGGDELQG 205
Query: 205 VESIRMAREAKVPIIVAINKIDKP-AADIERTKNMLLA--QGITVEDLGGDIQAVPISAL 261
++ ++ +VA+ K D R + ++ + + + + ISA
Sbjct: 206 IK----RGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR 261
Query: 262 TGTNVDNLTEAIERTKNMLLAQG 284
+G + + + ++ ++++LA G
Sbjct: 262 SGEGISEMWDKMKDFQDLMLASG 284
Score = 29.8 bits (67), Expect = 2.9
Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 199 GVMEQTVESIRMAREAKVPII----VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQ 254
GV T E+I + A II V + + + AD+ +LL G ++Q
Sbjct: 150 GVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPA-----GGDELQ 204
Query: 255 AV--------PISALTGTNVDNLTEAIERTKNMLLA--QGITVEDLGGDIQAVPISALTG 304
+ + A+T ++ D + A R + ++ + + + + ISA +G
Sbjct: 205 GIKRGIIEMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSG 263
Query: 305 TNVDNLTEAIVAQAEIM 321
+ + + + ++M
Sbjct: 264 EGISEMWDKMKDFQDLM 280
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 38.0 bits (89), Expect = 0.004
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L VV + IG+ V + + D G + + +
Sbjct: 33 GKTTILYQFSMNEVVH-----TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 87
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T+ V++VV + D + T E + +M K +++ NK D + L
Sbjct: 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 147
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
I ALTG + L + +E
Sbjct: 148 KLTSIK----DHQWHIQACCALTG---EGLCQGLE 175
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 37.6 bits (88), Expect = 0.005
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+L V I+ +G + TL+ ++ D G + +
Sbjct: 30 GKTTILKKFNGEDVDT-----ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
TD ++ VV +AD M+ + + E A +++ NK D P A + L
Sbjct: 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL 144
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
I + SA+TG ++L I+
Sbjct: 145 ELDSIR----SHHWRIQGCSAVTG---EDLLPGID 172
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 37.2 bits (87), Expect = 0.006
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTTLL L + + IT G + +++S ++ D G
Sbjct: 28 GKTTLLKQLASEDISH-----ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE 82
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
TDI++ V+ +AD E+T + + + E + VP+++ NK D AA L
Sbjct: 83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL 142
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
I Q SALTG + + + +
Sbjct: 143 NLHTIR----DRVWQIQSCSALTG---EGVQDGMN 170
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 38.6 bits (91), Expect = 0.007
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 169 DTPGHAAFS-----NMRSRGAHCTDIVVLVVAADDGVMEQTVESI-RMAREAKVPIIVAI 222
DTPGH F+ +MR D V+V A GV Q+ E++ R A + KVP I +
Sbjct: 88 DTPGHVDFTIEVERSMR-----VLDGAVMVYCAVGGVQPQS-ETVWRQANKYKVPRIAFV 141
Query: 223 NKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPI 258
NK+D+ A+ + N + LG VP+
Sbjct: 142 NKMDRMGANFLKVVNQI------KTRLGA--NPVPL 169
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 36.8 bits (86), Expect = 0.009
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 29/167 (17%)
Query: 127 GKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPGH----------AA 175
GK++LL+ L N + S+ G T+ I ++V + F+D PG+
Sbjct: 35 GKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVSKKERML 90
Query: 176 FSNM-----RSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
+ + ++R +V L+V + + + + +P + + K+DK
Sbjct: 91 WKRLVEDYFKNR--WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148
Query: 231 DIERTKNMLLAQGITVEDLG--GDIQAVPISALTGTNVDNLTEAIER 275
ER K + + + G+ +P S++TG + L + I
Sbjct: 149 S-ERAKKLEEHR----KVFSKYGEYTIIPTSSVTGEGISELLDLIST 190
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 37.3 bits (86), Expect = 0.013
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID--KPAADIERTKNMLLAQGIT 245
+VV +V D R +++ NK D + ++ K+ +
Sbjct: 71 ALVVKIVDIFDFNGSWLPGLHRFVGNN--KVLLVGNKADLIPKSVKHDKVKHWMRYS--- 125
Query: 246 VEDLGGDIQAV-PISALTGTNVDNLTEAIERTKN 278
+ LG + V ISA G + L +AIE +
Sbjct: 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 36.0 bits (84), Expect = 0.016
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G +S MR R + V A ++ + E I R+ VP++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEG---FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 220 VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIER 275
+ NK D P+ ++ + LA+ G I + SA T VD+ L I +
Sbjct: 114 LVGNKCDLPSRTVDTKQAQDLAR-----SYG--IPFIETSAKTRQGVDDAFYTLVREIRK 166
Query: 276 TKN 278
K
Sbjct: 167 HKE 169
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 36.1 bits (84), Expect = 0.017
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 20/164 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAFSNMRSRGAH 185
GKTT+++ L+ ++ I IG + KS T D G + N+
Sbjct: 33 GKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYK 89
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE-----AKVPIIVAINKIDKP-AADIERTKN 237
++ V+ ++D M E + + ++PI+ NK+D A +
Sbjct: 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQ 149
Query: 238 MLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIERTK 277
+L + I A+ G + L + I+ K
Sbjct: 150 LLCLENIK----DKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 36.0 bits (84), Expect = 0.018
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G +S MR R + V A ++ + E I R+ VP++
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEG---FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 220 VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIER 275
+ NK D P ++ + LA+ G I + SA T V++ L I +
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAK-----SYG--IPFIETSAKTRQGVEDAFYTLVREIRQ 183
Query: 276 TK 277
+
Sbjct: 184 YR 185
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.6 bits (83), Expect = 0.023
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 20/156 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRSRGA 184
GKTT ++ + + + + +G + + G VT D G F +M R
Sbjct: 34 GKTTFVNVIASGQFNED----MIPTVGFNMRKITKG-NVTIKLWDIGGQPRFRSMWERYC 88
Query: 185 HCTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNM 238
+V +V AAD +E + + + + +P++V NK D P A D +
Sbjct: 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK 148
Query: 239 LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
+ I +I IS DN+ ++
Sbjct: 149 MNLSAIQ----DREICCYSISCKEK---DNIDITLQ 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 35.9 bits (82), Expect = 0.031
Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 39/155 (25%)
Query: 112 MKRPPVVTIM--GHVDHGKTTLLDTLRNTSVVK-------SEFGGITQHIGAFVVTLKSG 162
+K+ T+M G GK+TL+++L T + +E T I A V ++
Sbjct: 13 VKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72
Query: 163 E---QVTFLDTPGHAAFSN--------------------------MRSRGAHCTDIVVLV 193
++T +DTPG+ N R
Sbjct: 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFY 132
Query: 194 VAADDGVMEQTVESIRMAR-EAKVPIIVAINKIDK 227
+ G + ++ M KV I+ I K D
Sbjct: 133 FISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADT 167
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 35.3 bits (82), Expect = 0.032
Identities = 40/167 (23%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRSRGA 184
GKT++L L VV +G + TL+ ++F D G
Sbjct: 34 GKTSILYRLHLGDVVT-----TVPTVGVNLETLQYK-NISFEVWDLGGQTGVRPYWRCYF 87
Query: 185 HCTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNM 238
TD V+ VV + D M + + E K +++ NK D P AA
Sbjct: 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQ 147
Query: 239 LLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGI 285
L I V S+ TG D L E ++ L QG+
Sbjct: 148 LGVSSIM----NRTWTIVKSSSKTG---DGLVEGMDWLVERLREQGL 187
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 35.8 bits (83), Expect = 0.033
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 15/71 (21%)
Query: 278 NM---LLAQGITV------EDLGGDIQAVPISALTGTNVDNLTEAIVAQAE----IMHLK 324
N L +G + ++LG + +P +A G V+ L I AE +
Sbjct: 117 NKFDLLKKKGAKIDIKKMRKELG--VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPII 174
Query: 325 ADYGGPVEAMI 335
Y +E I
Sbjct: 175 PRYDEDIEREI 185
Score = 33.8 bits (78), Expect = 0.13
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 217 PIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPISALTGTNVDNLT 270
II+ +NK D +L +G + ++LG + +P +A G V+ L
Sbjct: 111 NIILVLNKFD-----------LLKKKGAKIDIKKMRKELG--VPVIPTNAKKGEGVEELK 157
Query: 271 EAIERTKNMLLAQGITVEDLGGDIQAVPISALT 303
I + + DI+ I ++
Sbjct: 158 RMIALMAEGKVTTNPIIPRYDEDIERE-IKHIS 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 35.8 bits (82), Expect = 0.034
Identities = 24/240 (10%), Positives = 63/240 (26%), Gaps = 79/240 (32%)
Query: 115 PPVVTIMGHVDHGKTTLLDTLRN----------------------------------TSV 140
+V +G GKTTL +
Sbjct: 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 141 VKSEFGGITQHIGAFVVTLKSGEQVT-------------FLDTPG-------HAAFSNMR 180
++ +G + ++ ++ + +DTPG H +
Sbjct: 74 MREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM 133
Query: 181 SRGAHCTDIVVL---VVAADDGVMEQTVESIRMAREAKVPIIVAINKID----------- 226
+ + + ++ + ++ + I A+NK+D
Sbjct: 134 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 193
Query: 227 ---------KPAADIERTKNMLLAQGIT--VEDLGGDIQAVPISALTGTNVDNLTEAIER 275
++ + L+A + + ++ ++ + +SA T ++L
Sbjct: 194 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 253
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 34.8 bits (81), Expect = 0.042
Identities = 37/149 (24%), Positives = 51/149 (34%), Gaps = 18/149 (12%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAAFSNMRSRGA 184
GKTT+L L+ VV IG V T+ + F D G +
Sbjct: 19 GKTTILYRLQVGEVVT-----TIPTIGFNVETVTYKN-LKFQVWDLGGLTSIRPYWRCYY 72
Query: 185 HCTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNM 238
TD V+ VV + D + + + M E K ++V NK D A N
Sbjct: 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS 132
Query: 239 LLAQGITVEDLGGDIQAVPISALTGTNVD 267
L + Q SA GT +D
Sbjct: 133 LGLPALK----DRKWQIFKTSATKGTGLD 157
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.048
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 11/31 (35%)
Query: 627 EVTSIKKELECGLRLEDP----------SIE 647
E ++KK L+ L+L ++E
Sbjct: 18 EKQALKK-LQASLKLYADDSAPALAIKATME 47
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 35.2 bits (81), Expect = 0.049
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 20/147 (13%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170
V ++G GK++ +++L V S F T+ G + +DT
Sbjct: 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMG-GFTINIIDT 91
Query: 171 PG--------HAAFSNMRSRGAHCT-DIVVLVVAADDG-VMEQTVESIRMAR-----EAK 215
PG H A ++ + T D+++ V D V E + + E
Sbjct: 92 PGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 216 VPIIVAINKIDKPAADIERTKNMLLAQ 242
++ + D E + ++
Sbjct: 152 CKTLLVLTHAQFSPPD-ELSYETFSSK 177
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 34.4 bits (80), Expect = 0.055
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 190 VVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK-PAADIERTKNMLLAQGITVED 248
VV +V V+ + +P+IV K DK P ++ ++ +
Sbjct: 109 VVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT----LN 164
Query: 249 LGGDIQAVPISALTGTNVDNLTEAIER 275
+ + + + S+ T D AI++
Sbjct: 165 IDPEDELILFSSETKKGKDEAWGAIKK 191
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 34.6 bits (80), Expect = 0.057
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 162 GEQVT--FLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREA 214
G+ V DT G +S +R DI VL + + V+++ + +R
Sbjct: 54 GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP- 112
Query: 215 KVPIIVAINKID---KPAADIERTKNMLLAQGITVEDLGGDIQAVP---ISALTGTNVDN 268
VPI++ K+D + T + QG E+L I A S+ T NV
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQG---EELRKQIGAAAYIECSSKTQQNVKA 169
Query: 269 L-TEAI 273
+ AI
Sbjct: 170 VFDTAI 175
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 33.6 bits (78), Expect = 0.087
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G +S MR R + V A ++ + Q E I R+ VP++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEG---FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 220 VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIER 275
+ NK D A +E + LA+ G I + SA T V++ L I +
Sbjct: 113 LVGNKSDLAARTVESRQAQDLAR-----SYG--IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 34.5 bits (79), Expect = 0.098
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 15/126 (11%)
Query: 159 LKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
LK +V + F +M R +VV +V D + + PI
Sbjct: 45 LKHYNEVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFD-FNGSFIPGLPRFAADN-PI 101
Query: 219 IVAINKID------KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEA 272
++ NK D K + + M G+ + +SA G + + EA
Sbjct: 102 LLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP------VDVCLVSAAKGIGMAKVMEA 155
Query: 273 IERTKN 278
I R +
Sbjct: 156 INRYRE 161
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.11
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 112 MKRPPVVTIM--GHVDHGKTTLLDTLRNTSVVKSEFGGI--TQHIGAFVVTLKSGE---Q 164
+ + I+ G GK+TL+DTL NT + + L+ +
Sbjct: 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 165 VTFLDTPG 172
+T + T G
Sbjct: 97 LTIVSTVG 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 34.3 bits (78), Expect = 0.11
Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 14/185 (7%)
Query: 117 VVTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175
+V +MG GK+++ + N + + + T + + + + ++ PG
Sbjct: 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNP--SLEHFSTLIDLAVMELPGQLN 58
Query: 176 FSNMRSRGAHC---TDIVVLVVAADDGVMEQTVESIRMAREAK-----VPIIVAINKIDK 227
+ +V V+ + D + + A + I V I+K+D
Sbjct: 59 YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
Query: 228 PAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGI 285
+ D ++ ++++ G + +LG D V LT ++ EA R L+ +
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY-LTSIFDHSIYEAFSRIVQKLIPELS 177
Query: 286 TVEDL 290
+E++
Sbjct: 178 FLENM 182
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.13
Identities = 32/233 (13%), Positives = 61/233 (26%), Gaps = 50/233 (21%)
Query: 155 FVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVE----SIRM 210
F+ G + + A G IV + A D + +
Sbjct: 1177 FM--EAQGAGIQIIMQADLA-----LKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTT 1229
Query: 211 AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISA-LTGTNVDNL 269
ARE + A ++ R + ++ + + + +++A + ++
Sbjct: 1230 AREHHSSVKYASPNLNMKY----RKRQLVTREAQIKDWVENELEA--LKLEAEEIPSEDQ 1283
Query: 270 TE------------AIERTKNMLLAQGITVEDLGG-----------------DIQAVPIS 300
E A + + G D+
Sbjct: 1284 NEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFH 1343
Query: 301 ALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQ 353
T T ++ E+ + HL G PV + V KF T K A
Sbjct: 1344 G-TSTKANDKNESATINEMMKHLGRSEGNPV--IGVFQKFLTGHPKGAAGAWM 1393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 33.8 bits (77), Expect = 0.14
Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 93 DDSNGKDVERRPPADPSVLMKRPPVVTI--MGHVDHGKTTLLDTLRNTSVVKSE--FGGI 148
S+G++ P R + I +G GK+ +++ V S I
Sbjct: 6 HHSSGRE-NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI 64
Query: 149 TQHIGAFVVTLKSGEQVTFLDTPG--------HAAFSNMRSRGAHCTD--IVVLVVAADD 198
T+ + K ++ +DTPG + + +L+V
Sbjct: 65 TKKCEKRSSSWK-ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG 123
Query: 199 GVMEQTVESIRMARE-----AKVPIIVAINKIDKP 228
E+ ++ + A+ +I+ + D
Sbjct: 124 RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL 158
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.8 bits (76), Expect = 0.23
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 165 VTFLDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDGVMEQTVESIR-MAREAKVPIIV 220
+ +D+PG + ++ V+ A + + + +
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF 235
Query: 221 AINKIDKPAADIE 233
+N D+ +
Sbjct: 236 LVNAWDQVRESLI 248
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 33.2 bits (75), Expect = 0.26
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 143 SEFG-GITQHIGAFVVTLKSGEQVTFLDTPGH-AAFSNMRSRG----------AHCTDIV 190
+ FG + + E ++ +DTPG + SRG A D++
Sbjct: 133 NPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLI 192
Query: 191 VLVVAADDGVMEQTVES-IRMAREAKVPIIVAINKID-KPAADIER 234
+L+ A + I R + I V +NK D + R
Sbjct: 193 ILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMR 238
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 32.8 bits (74), Expect = 0.29
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 17/134 (12%)
Query: 166 TFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKI 225
T+L+ + S ++ D+++++ + G VE +R +I +
Sbjct: 88 TYLERIEGLSKSYLKLHQVTNKDVIMIISNS--GRNTVPVEMAIESRNIGAKVIAMTSMK 145
Query: 226 DKPAADIERTKNMLLAQGI-------------TVEDLGGDIQAVPISALTGTNVDNLTEA 272
L + + +I + S G +
Sbjct: 146 HSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANSEIYSGATSDSIGCFLAQAL-- 203
Query: 273 IERTKNMLLAQGIT 286
I T ++L+ QG
Sbjct: 204 IVETLHLLVQQGFE 217
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 32.1 bits (73), Expect = 0.32
Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 36/197 (18%)
Query: 104 PPADPSVLMKRPPVVTI----MGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA----F 155
P A S + P + + +G GKT LL S F +++ +
Sbjct: 3 PGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLL-----MSYANDAF--PEEYVPTVFDHY 55
Query: 156 VVTLKSGEQ---VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVES 207
V++ G + + DT G + +R TD+ ++ + V E+ V
Sbjct: 56 AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115
Query: 208 IRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI--- 258
++ VP ++ +ID D +T L + L +I A
Sbjct: 116 LKEYAP-NVPFLLIGTQID--LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172
Query: 259 SALTGTNVDNL-TEAIE 274
SALT + + EAI
Sbjct: 173 SALTQKGLKTVFDEAII 189
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 32.3 bits (74), Expect = 0.39
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 70 VIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKT 129
+ I+ + G+ ++ + + + + + + I+G + GK+
Sbjct: 83 LSINSVNGQGLN-QIVPASKEILQEKFDRMRAKGVKPRAIRAL-------IIGIPNVGKS 134
Query: 130 TLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
TL++ L ++ K + GIT +K G+++ LDTPG
Sbjct: 135 TLINRLAKKNIAKTGDRPGITTSQ----QWVKVGKELELLDTPG 174
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 31.4 bits (72), Expect = 0.52
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 27/120 (22%)
Query: 162 GEQVTF--LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESI--------RMA 211
G+ D G VV V + +D E + +++
Sbjct: 64 GQSYLLLIRDEGGPPELQFAA--WVDA---VVFVFSLED---EISFQTVYNYFLRLCSFR 115
Query: 212 REAKVPIIVAINKIDKPAAD---IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268
++VP+++ + AA+ I+ ++ L+ + A G NV+
Sbjct: 116 NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL------KRCTYYETCATYGLNVER 169
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.9 bits (72), Expect = 0.62
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 118 VTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG 172
+ ++G GK+ +++ + K +T+ + ++ +DTP
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-NREIVIIDTPD 80
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 31.2 bits (71), Expect = 0.63
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPI 218
++ DT G F +R TDI +L + V E+ V IR K PI
Sbjct: 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPI 127
Query: 219 IVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI---SALTGTNVDNL 269
I+ + D + + L + L +I+A SALT N+ +
Sbjct: 128 ILVGTQSDL--REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185
Query: 270 -TEAIE 274
AI
Sbjct: 186 FDAAIV 191
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 31.3 bits (71), Expect = 0.65
Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 18/162 (11%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHC 186
GKT LL + + + + A V+ + DT G + +R
Sbjct: 17 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76
Query: 187 TDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLA 241
TD+ ++ + + V + +R PII+ K+D D + T L
Sbjct: 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLR--DDKDTIEKLKE 133
Query: 242 QGITV------EDLGGDIQAVPI---SALTGTNVDNL-TEAI 273
+ +T + +I AV SALT + + EAI
Sbjct: 134 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 31.3 bits (71), Expect = 0.77
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPIIVAIN 223
DT G + +R TD+ ++ + + V + +R PII+
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 142
Query: 224 KIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI---SALTGTNVDNL-TEAI 273
K+D D + T L + +T + +I AV SALT + + EAI
Sbjct: 143 KLDLR--DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 30.8 bits (70), Expect = 0.79
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPI 218
+ DT G ++ +R D+ +L + + V ++ + ++ VPI
Sbjct: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPI 115
Query: 219 IVAINKID--KPAADIERTKNMLLAQGITVEDLGGDIQAVPI---SALTGTNVDNL-TEA 272
++ K+D + + E+L I A S+ + NV + A
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175
Query: 273 I 273
I
Sbjct: 176 I 176
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 31.0 bits (71), Expect = 0.79
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G FS MR R ++V + D +++ + I R+ P+I
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDG---FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 220 VAINKID 226
+ NK+D
Sbjct: 128 LVANKVD 134
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.3 bits (70), Expect = 0.86
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 112 MKRPPVVTIM--GHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA----FVVTLKSGE-- 163
+ T+M G GK+TL+++L T + E+ G + I + E
Sbjct: 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 62
Query: 164 ---QVTFLDTPG 172
+T +DTPG
Sbjct: 63 VQLLLTIVDTPG 74
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 31.1 bits (70), Expect = 0.89
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 206 ESIRMAREAKVPIIVAINKIDKPA-ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGT 264
+ K PI+V + K D+ I L++ ++Q V SA +
Sbjct: 189 NLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK--------KNLQVVETSARSNV 240
Query: 265 NVDN----LTEAIER 275
NVD L + I++
Sbjct: 241 NVDLAFSTLVQLIDK 255
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 31.4 bits (72), Expect = 0.97
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 537 TVKQFNVIYKLVEDVKEEINA 557
KQ NVI + + + E ++A
Sbjct: 81 VTKQLNVIKRFLHEASEIVHA 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.3 bits (70), Expect = 1.00
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 112 MKRPPVVTIM--GHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQV---- 165
+KR T+M G GK+TL+++L T + E+ G + I V +S +
Sbjct: 26 VKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85
Query: 166 -----TFLDTPG 172
T +DTPG
Sbjct: 86 VQLLLTIVDTPG 97
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 30.6 bits (70), Expect = 1.2
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 23/124 (18%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G F MR R H +LV A +D + + I R+ P++
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHG---FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 220 VAINKIDKPAA-DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIE 274
+ NK D + + R++ + SA NVD L A+
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGA-----SHH--VAYFEASAKLRLNVDEAFEQLVRAVR 171
Query: 275 RTKN 278
+ +
Sbjct: 172 KYQE 175
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 30.7 bits (69), Expect = 1.4
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPIIVAIN 223
DT G + +R TD+ ++ + V + +R PII+
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGT 267
Query: 224 KIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI---SALTGTNVDNL-TEAI 273
K+D D + T L + +T + +I AV SALT + + EAI
Sbjct: 268 KLD--LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 30.1 bits (68), Expect = 1.5
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 23/130 (17%)
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPIIVAIN 223
DT G + +R +++L D + + + + KVPIIV
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGC 146
Query: 224 KIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI---SALTGTNVDNL-TEAI 273
K D + N L G+ +++ + AV SA NV + EA
Sbjct: 147 KTD--LRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
Query: 274 E-----RTKN 278
E R +N
Sbjct: 205 EVALSSRGRN 214
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.9 bits (69), Expect = 1.7
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT-P 171
P V I+G GKT+L TL + ++ + Q +++ P
Sbjct: 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL------------------KFNAYQPLYINLDP 177
Query: 172 GHAAFS 177
F+
Sbjct: 178 QQPIFT 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.6 bits (68), Expect = 1.7
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 112 MKRPPVVTIM--GHVDHGKTTLLDTLRNTSVVK-------SEFGGITQHIGAFVVTLKSG 162
+K+ T+M G GK+TL+++L T + +E T I A V ++
Sbjct: 32 VKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEER 91
Query: 163 E---QVTFLDTPGH 173
++T +DTPG+
Sbjct: 92 GVKLRLTVVDTPGY 105
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 29.8 bits (68), Expect = 1.8
Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 28/131 (21%)
Query: 162 GEQVTF--LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDGVMEQTVESIRMARE--- 213
+Q LDT G F+ MR + LV + + T ++ RE
Sbjct: 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQG---FALVYSITA---QSTFNDLQDLREQIL 101
Query: 214 -----AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN 268
VP+I+ NK D ER QG + + + SA + NV+
Sbjct: 102 RVKDTEDVPMILVGNKCDLED---ERVVGK--EQGQNLARQWCNCAFLESSAKSKINVNE 156
Query: 269 ----LTEAIER 275
L I R
Sbjct: 157 IFYDLVRQINR 167
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 2.0
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 620 SMKHLKEEVTSIKKEL-------ECGLRLEDPSI--EFEPGDTIVC 656
+ + + + L EC + P I F GD VC
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVY--PPKIVERFSEGDV-VC 45
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 30.2 bits (68), Expect = 2.1
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 186 CTDIVVLVV-AADDGVMEQTVESI-RMARE---AKVPIIVAINKIDKP-AADIERTKNML 239
T ++ VV + D + + E + RM E ++V NK D P A + + L
Sbjct: 232 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 291
Query: 240 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280
+ + A +G D L E ++ N L
Sbjct: 292 GLHSLR----HRNWYIQATCATSG---DGLYEGLDWLSNQL 325
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 29.3 bits (66), Expect = 2.7
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVES--IRMARE--AKVPIIVAINK 224
DT G + +R TD++++ + D + + + VPII+ NK
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 138
Query: 225 IDKPAADIERTKNMLLAQGITV------EDLGGDIQAVP---ISALTGTNVDNL-TEAI 273
D E T+ L D+ I A SA T V + A
Sbjct: 139 KD--LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 29.6 bits (67), Expect = 2.8
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 34/164 (20%)
Query: 127 GKTTLLDTLRNTSVVKSEFGGITQH-IGAFVVTLK---SGEQVTFL--DTPGHAAFSNMR 180
GKTT + R + EF +G V L + + F DT G F +R
Sbjct: 27 GKTTFV--KR---HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 81
Query: 181 S---RGAHCTDIVVLVVAADDGVMEQTVESIRM-AREAK-----VPIIVAINKIDKPAAD 231
A C +++ D T +++ R+ +PI++ NK+D
Sbjct: 82 DGYYIQAQC---AIIMF---DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-- 133
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ K A+ I +Q ISA + N + + R
Sbjct: 134 -RKVK----AKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLAR 171
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 29.3 bits (66), Expect = 3.4
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 20/129 (15%)
Query: 162 GEQVT--FLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREA 214
G+QV DT G + +R TD++++ + D + + E+ V ++
Sbjct: 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP- 128
Query: 215 KVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQAVPI---SALTGTN 265
VPII+ NK D E + L + IQA SA T
Sbjct: 129 NVPIILVANKKDL--RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 266 VDNL-TEAI 273
V + A
Sbjct: 187 VREVFETAT 195
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 29.8 bits (67), Expect = 3.5
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 12 VMMYVDNSVNYD-RPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQV 70
++++ S Y R + +I D + I+D ++ +++ +VDN Y V
Sbjct: 178 TLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK--DIICFVDN--CYGEFMDTKEPTDV 233
Query: 71 IIDIIQKSGMKYM 83
D+I S +K +
Sbjct: 234 GADLIAGSLIKNI 246
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine
biosynthesis, amino-acid biosynthesis, diaminopimelate
biosynthesis; HET: KPI CME; 2.10A {Mycobacterium
tuberculosis} PDB: 1xxx_A
Length = 304
Score = 28.9 bits (65), Expect = 4.9
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 6/149 (4%)
Query: 210 MAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269
+ A P IV + AD+ ++ G+ G D +P + T ++
Sbjct: 162 IRALASHPNIVG---VXDAKADLHSGAQIMADTGLAYYS-GDDALNLPWLRMGATGFISV 217
Query: 270 TEAIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADYGG 329
+ + L D+ + + I+ N + + + L+ G
Sbjct: 218 IAHLAAGQLRELLSAFGSGDIAT-ARKINIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVG 276
Query: 330 PVEAMIVESKFDTHRGKLATALVQRGTLK 358
V + LA + L+
Sbjct: 277 DPRLPQVAAT-PEQIDALAADMRAASVLR 304
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 28.6 bits (65), Expect = 5.2
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 37/138 (26%)
Query: 162 GEQVTF--LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDGVMEQTVESIRMARE--- 213
G++ +DT G +S + +LV + ++ E I++
Sbjct: 51 GQEYHLQLVDTAGQDEYSIFPQTYSIDING---YILVYSVTS---IKSFEVIKVIHGKLL 104
Query: 214 -----AKVPIIVAINKIDKPAA-DIERTKNMLLAQ--GIT-VEDLGGDIQAVPISALTGT 264
++PI++ NK D I + LA+ +E SA
Sbjct: 105 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLE----------SSAKENQ 154
Query: 265 NVDN----LTEAIERTKN 278
+ + E+
Sbjct: 155 TAVDVFRRIILEAEKMDG 172
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
lipoprotein, PSI-2, protein initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 469
Score = 29.2 bits (65), Expect = 5.6
Identities = 2/20 (10%), Positives = 10/20 (50%)
Query: 66 YDFQVIIDIIQKSGMKYMVI 85
D + + ++ +G+ ++
Sbjct: 54 LDCRQWMQTLKAAGIPAAIL 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.4 bits (64), Expect = 5.6
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 27/122 (22%)
Query: 162 GEQVTF--LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDGVMEQTVESIRMARE--- 213
T DT G F M+ H +LV + +Q++E + +
Sbjct: 53 KSVCTLQITDTTGSHQFPAMQRLSISKGHA---FILVFSVTS---KQSLEELGPIYKLIV 106
Query: 214 ------AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVD 267
+P+++ NK D+ +++ + +AQ + + SA NV
Sbjct: 107 QIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWK--CAFMETSAKMNYNVK 159
Query: 268 NL 269
L
Sbjct: 160 EL 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 28.3 bits (63), Expect = 6.2
Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 32/204 (15%)
Query: 93 DDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI---- 148
S+G++ P ++ R +V + G V GKT +L L ++ +
Sbjct: 6 HHSSGRENLYFQGRAPQPVVARCKLVLV-GDVQCGKTAMLQVLAKDCYPETYVPTVFENY 64
Query: 149 --TQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAAD-----DGVM 201
V L + DT G + N+R +D V+L D +
Sbjct: 65 TACLETEEQRVEL------SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 118
Query: 202 EQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITV------EDLGGDIQA 255
++ I +++ K D T L Q + + A
Sbjct: 119 KKWRTEILDYCP-STRVLLIGCKTDL--RTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175
Query: 256 VP---ISALTG-TNVDNL-TEAIE 274
SA T ++ ++ A
Sbjct: 176 EIYLEGSAFTSEKSIHSIFRTASM 199
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 27.8 bits (63), Expect = 6.6
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 168 LDTPGHAAFSNMRS---RGAHCTDIVVLVVAADDG----VMEQTVESI-RMAREAKVPII 219
LDT G F++MR + +LV + + ++ + I R+ R KVP+I
Sbjct: 56 LDTAGTEQFASMRDLYIKNGQG---FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 220 VAINKIDKPAA---DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEA 272
+ NK+D + + LA+ + G + SA + T VD +
Sbjct: 113 LVGNKVDLESEREVSSSEGRA--LAE-----EWG--CPFMETSAKSKTMVDELFAEIVRQ 163
Query: 273 IER 275
+
Sbjct: 164 MNY 166
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B*
2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Length = 637
Score = 28.9 bits (65), Expect = 6.6
Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 194 VAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLA----QGITVEDL 249
+A + +++ + + + + V AA+ L++ +DL
Sbjct: 144 IAPEH--LDEVLSDVLLE---MTKVEVFSRYDQGAAAE------ALVSVYERSDKPAKDL 192
Query: 250 GGDIQAVPISALTGTN----VDNLTEAIERT-KNMLLAQGITV 287
++ PI + L + + R K ++ +T+
Sbjct: 193 ALNLGLDPIGFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTI 235
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A
C-terminal alpha-helical segment, amino-acid
biosynthesis, cytoplasm; HET: MCL; 2.20A
{Corynebacterium glutamicum}
Length = 304
Score = 28.5 bits (64), Expect = 6.8
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 210 MAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNL 269
M R +++P I+A + D+ +++ G+ G D + AL G+ ++
Sbjct: 163 MRRLSELPTILA---VXDAKGDLVAATSLIKETGLAWYS-GDDPLNLVWLALGGSGFISV 218
Query: 270 TEAI 273
Sbjct: 219 IGHA 222
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 28.2 bits (63), Expect = 6.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 459 SKHGRIYLIGDVDGSVEALLDVFD 482
SK+ I+++GD+ G L++ D
Sbjct: 10 SKYRNIWVVGDLHGCYTNLMNKLD 33
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 28.8 bits (63), Expect = 6.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 644 PSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673
P I E GDTI NK P G
Sbjct: 451 PVIWAEVGDTIRVTFHNKGAYPLSIEPIGV 480
Score = 28.4 bits (62), Expect = 9.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 644 PSIEFEPGDTIVCFVKNKVPQFTDWNPPG 672
P I+ E GD + +KN + ++ G
Sbjct: 95 PIIKAETGDKVYVHLKNLASRPYTFHSHG 123
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 28.6 bits (63), Expect = 7.4
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 403 INPFCPSGDVDGSVEALLDVFDTYTSALCRLDIVHYGVTSTDQWRRYWTCSTPTRESKHG 462
+ + + L VF R DIVH T ++ R+ + + G
Sbjct: 10 HDAKEANKQTATKLT-LPAVFTAPI----RTDIVHKVFTDLNKNRKQASGVKISTRGTAG 64
Query: 463 R 463
Sbjct: 65 M 65
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 28.2 bits (62), Expect = 8.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 644 PSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673
P++ E GD + KNK + + G
Sbjct: 60 PTLYAEVGDIMKVHFKNKAHKPLSIHAQGI 89
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus
thermophilus}
Length = 350
Score = 28.2 bits (62), Expect = 8.5
Identities = 8/84 (9%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 7 DHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIY 66
L E M Y ++ ++ ++ + + ++ + + ++ +N + V Y
Sbjct: 84 KDLLEQMEYKKGTLAQGYLRKIVNQVDIVGHLEKINEQVELIEEAMNRHINLNC-GQVEY 142
Query: 67 DFQVIIDIIQKSGMKYMVINPTNS 90
+ + + + K
Sbjct: 143 HLENLPLTLDQLLTKNFSPFFAIE 166
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 28.1 bits (62), Expect = 8.7
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 463 RIYLIGDVDGSVEAL---LDVFDTYTSALCRLDIVHYG 497
RI +I DV ++ AL L DIV YG
Sbjct: 5 RILIISDVHANLVALEAVLSDAGRVDDIWSLGDIVGYG 42
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.7 bits (61), Expect = 8.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 115 PPVVTIMGHVDHGKTTLLDTL 135
+++I+G D GKTTL+ +
Sbjct: 2 SLILSIVGTSDSGKTTLITRM 22
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.0 bits (63), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 219 IVAINKID-KPA--ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
++ INKID A ADI++ +N + D + V +S T D + E IE+
Sbjct: 168 LIVINKIDLADAVGADIKKMENDAKR-------INPDAEVVLLSLKTMEGFDKVLEFIEK 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,510,726
Number of extensions: 687920
Number of successful extensions: 2604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 247
Length of query: 673
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 573
Effective length of database: 3,909,693
Effective search space: 2240254089
Effective search space used: 2240254089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)