RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4665
(673 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 134 bits (338), Expect = 1e-36
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG-----------------GITQHIGAFVVTLK 160
V +GHVDHGKTTL L + ++ GIT +
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-T 64
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-II 219
+ + +D PGHA + GA D +LVV+A DG M QT E I +AR+ VP I+
Sbjct: 65 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 124
Query: 220 VAINKIDKPAAD--IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTK 277
V +NK+D ++ + + E G ++ + SAL + R +
Sbjct: 125 VFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 184
Query: 278 NMLLAQGITVED 289
N + + + D
Sbjct: 185 NEWVDKIWELLD 196
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 122 bits (307), Expect = 2e-32
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 112 MK-RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE------- 163
MK R P+V+++GHVDHGKTTLLD +R ++V E GGITQHIGA + + E
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL 60
Query: 164 ----------QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMARE 213
+ F+DTPGH AF+ +R RG D+ +L+V ++G QT E++ + R
Sbjct: 61 KKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 120
Query: 214 AKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ P +VA NKID+ + + + L G + E+
Sbjct: 121 YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE 180
Query: 274 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAE 319
+ V D + +PISA+TG + L ++ A+
Sbjct: 181 RFDR---------VTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 118 bits (298), Expect = 2e-31
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 30/186 (16%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAFVVTLKS 161
V +GHVDHGKTTL + + GIT + + +
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TA 64
Query: 162 GEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKV-PIIV 220
D PGHA + G D +LVVAA+DG M QT E + +AR+ V ++V
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124
Query: 221 AINKIDKPA--ADIERTKNMLLAQGITVEDLGGDIQAVPISALTG----------TNVDN 268
+NK D +E + + G + + SAL +V
Sbjct: 125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQK 184
Query: 269 LTEAIE 274
L +A++
Sbjct: 185 LLDAVD 190
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 108 bits (270), Expect = 4e-27
Identities = 55/223 (24%), Positives = 81/223 (36%), Gaps = 50/223 (22%)
Query: 113 KRPPV-VTIMGHVDHGKTTLL------------DTLRNTSVVKSEFGG------------ 147
++ + V ++GHVD GK+T T+ +E G
Sbjct: 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKL 62
Query: 148 -------ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGV 200
IT I + QVT +D PGH F G D +L++A G
Sbjct: 63 KAERERGITIDIALWKFETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 121
Query: 201 ME-------QTVESIRMAREAKVP-IIVAINKIDKPAADIERTKNMLLAQGITVEDLG-- 250
E QT E +A V +IVA+NK+D D R + ++ ++ +G
Sbjct: 122 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 181
Query: 251 -GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGG 292
+ VPIS G N+ IE T N +G E G
Sbjct: 182 PKTVPFVPISGWNGDNM------IEATTNAPWYKGWEKETKAG 218
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 108 bits (271), Expect = 6e-27
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVV-----KSEFGGITQHIGA------------FVVTLK 160
+ I H+D GKTT + + + + G T
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIV 220
++ +D PGH F+ R D ++V + GV Q+ R A + KVP I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 221 AINKIDKPAADIERTKNML 239
NK+DK AD+ +
Sbjct: 129 FANKMDKTGADLWLVIRTM 147
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 105 bits (263), Expect = 2e-26
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 118 VTIMGHVDHGKTTLLD------------TLRNTSVVKSEFG------------------- 146
+ ++GHVDHGK+TL+ T++ + G
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 65
Query: 147 GITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVME---- 202
G+T ++ K T +D PGH F GA D +LVV+A G E
Sbjct: 66 GVTINLTFMRFETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 203 ---QTVESIRMAREAKVP-IIVAINKID--KPAADIERTKNMLLAQGITVEDLG---GDI 253
QT E I +A+ + +IVA+NK+D +P D +R K ++ + G +
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 184
Query: 254 QAVPISALTGTNVDNLTEAIERTKNMLL 281
+ VP+ A +G N+ + +E ++ L
Sbjct: 185 RFVPVVAPSGDNITHKSENMKWYNGPTL 212
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 100 bits (251), Expect = 4e-26
Identities = 31/102 (30%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 563 YAEEVLGEANVLQMFLITDGKKKVPVAGCRCSKGVLKKNALFKLVRRNEVLFEGKLESMK 622
Y E+V+G+A V Q F ++ K +AGC + G + +++ +L+R+ V++EG+++S+K
Sbjct: 1 YEEKVIGQAEVRQTFKVS---KVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK 57
Query: 623 HLKEEVTSIKKELECGLRLEDPSIEFEPGDTIVCFVKNKVPQ 664
K++V + + ECGL +++ + + GD I +V +V +
Sbjct: 58 RYKDDVREVAQGYECGLTIKN-FNDIKEGDVIEAYVMQEVAR 98
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 102 bits (254), Expect = 3e-25
Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 45/218 (20%)
Query: 120 IMGHVDHGKTTLLDTL--------------------------------RNTSVVKSEFGG 147
G+VD GK+TL+ L +++E
Sbjct: 14 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 73
Query: 148 ITQHIGAFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVES 207
A+ + + DTPGH ++ + GA D+ +++V A GV QT
Sbjct: 74 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH 133
Query: 208 IRMAREAKVP-IIVAINKIDKPAADIERTKNMLLAQGITVEDL---GGDIQAVPISALTG 263
+A + I+VAINK+D D +++ E + + VP+SAL G
Sbjct: 134 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG 193
Query: 264 TNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPISA 301
NV +++ G ++ ++ ++ V I++
Sbjct: 194 DNVV------NKSERSPWYAGQSLMEI---LETVEIAS 222
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 103 bits (256), Expect = 3e-25
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 111 LMKRPPV-VTIMGHVDHGKTTLLDTL----------------RNTSVVKSEFGGITQHIG 153
+ + V + +GHVD GK+TL + R E ++ +
Sbjct: 19 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALD 78
Query: 154 AFVVTLKSGE--------------QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDG 199
+ + G+ + + LD PGH + GA DI VLV++A G
Sbjct: 79 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 138
Query: 200 VME-------QTVESIRMAREAKVP-IIVAINKIDKPAAD--IERTKNMLLAQGITVEDL 249
E QT E +AR + ++V INK+D+P+ ER K + + + +
Sbjct: 139 EFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 198
Query: 250 GG-----DIQAVPISALTGTNVDNLTEAI 273
G D++ +P+SA TG NV + ++
Sbjct: 199 AGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 100 bits (249), Expect = 7e-25
Identities = 45/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 114 RPPV-VTIMGHVDHGKTTLLDTLRNTSVVKS----------EFGGITQHIG--------- 153
+P V + ++GHVDHGKTTL+ + K + G +IG
Sbjct: 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPE 65
Query: 154 -----------AFVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVA-ADDGVM 201
K +++F+D PGH GA D +LVVA +
Sbjct: 66 AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQ 125
Query: 202 EQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISAL 261
QT E V ++ + + E + T ++ +P+SAL
Sbjct: 126 PQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSAL 185
Query: 262 TGTNVDNLTEAIE 274
N+D+L E IE
Sbjct: 186 HKINIDSLIEGIE 198
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 95.8 bits (237), Expect = 8e-23
Identities = 27/238 (11%), Positives = 53/238 (22%), Gaps = 79/238 (33%)
Query: 117 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA---------------------- 154
+V +G GKTTL + + G
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 155 -------------------------FVVTLKSGEQVTFLDTPGHAAFSNMRSRGAHCTD- 188
++ L+ +DTPG G +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 189 ----IVVLVVAADDGVMEQTVESIRMAR-----EAKVPIIVAINKIDKPAADI------- 232
+VV + + +R I A+NK+D + +
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 233 ---------------ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
M + ++ ++ + +SA T ++L
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 239
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 94.7 bits (234), Expect = 1e-22
Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 27/214 (12%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175
P + I G + GKT+LL L G VT +D PGH
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTT-----DSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVK 58
Query: 176 ----FSNMRSRGAHCTDIVVLVVAADDGV---------MEQTVESIRMAREAKVPIIVAI 222
S+ A ++ +V + + + + E + I++A
Sbjct: 59 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118
Query: 223 NKIDKPAADIERTKNMLLAQGIT--VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNML 280
NK + A L I +E + V +N + ++ T
Sbjct: 119 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD--- 175
Query: 281 LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 314
G +L + A S + E I
Sbjct: 176 ---GFKFANLEASVVAFEGSINKR-KISQWREWI 205
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 95.6 bits (237), Expect = 6e-22
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 111 LMKRPPV---VTIMGHVDHGKTTLLDTLRNTSVVKSEFG----------------GITQH 151
LM + ++++ HVDHGK+TL D+L + + S GIT
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK 69
Query: 152 IGAFVVTLKSGEQ---------------VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAA 196
A + + ++ + +D+PGH FS+ + TD ++VV
Sbjct: 70 STAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 129
Query: 197 DDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLL 240
+GV QT +R A ++ +V INK+D+ +++ +K L
Sbjct: 130 IEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 173
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 87.3 bits (215), Expect = 2e-20
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 27/189 (14%)
Query: 113 KRPPV-VTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAFVVTL--------- 159
++ V + ++GHVDHGKTTL L + + GIT IG +
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 61
Query: 160 -------------KSGEQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVE 206
+ +V+F+D PGH A GA D +LV+AA++
Sbjct: 62 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR 121
Query: 207 SIRM-AREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTN 265
M + I+ + + +N + + + +PISAL G N
Sbjct: 122 EHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 181
Query: 266 VDNLTEAIE 274
+D L +AIE
Sbjct: 182 IDVLVKAIE 190
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 131
Score = 80.7 bits (199), Expect = 8e-19
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 464 IYLIGDVDGSVEALLDVFDTYTSALCRLDIVHYGVGQVSATDVELA------TLFNAIIY 517
+ + D GS+EA++ + + I +G VS DV A I
Sbjct: 25 VVVKADTLGSLEAVVKILRD-----MYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAII 79
Query: 518 TFNTTLHPAAKTSAEELGVTVKQFNVIYKLVEDVKEEINAMLPHTYAEEV 567
FN + P+A + + + Q NVIY+L+E+ +E + + + +
Sbjct: 80 AFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWM 129
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 80.9 bits (198), Expect = 3e-18
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 13/176 (7%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTP 171
+ V I+G + GK+TL + + N T G + F+DT
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 172 GHAAFSN------------MRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPII 219
G S D+VV+V+ A G+ Q + +
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124
Query: 220 VAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
V NK D E+ + + SA G N+D + +A+
Sbjct: 125 VVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 75.5 bits (184), Expect = 2e-16
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 6/168 (3%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSV------VKSEFGGITQHIGAFVVTLKSGEQVTFLDTP 171
+ I GH+DHGKTTL L + + F ++T +D P
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 172 GHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAAD 231
GHA A D+ ++VV A +G QT E + + +PIIV I K D +
Sbjct: 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNM 279
+ M++ + + +PISA TG VD L I T N
Sbjct: 128 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 175
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 73.6 bits (179), Expect = 9e-16
Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 33/184 (17%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ G + GK+TL+ L V + + G+T+ I +D PG
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK-----NHKIIDMPGFGFMM 57
Query: 178 NMRSRGAHC---------------TDIVVLV-----------VAADDGVMEQTVESIRMA 211
+ D+ VLV G + VE +
Sbjct: 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117
Query: 212 REAKVPIIVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTE 271
RE +P IVA+NK+DK E LA+ V D +PISA G N++ L
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVIN--FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 175
Query: 272 AIER 275
I
Sbjct: 176 RIFE 179
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 68.5 bits (166), Expect = 1e-13
Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 24/202 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTF-LDTPGHAAF 176
V +G D GKT L L + IT + V G +T +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 177 SNMRSRGAHCTDIVVLVVAADDGV--------MEQTVESIRMAREAKVPIIVAINKIDKP 228
+ R VV VV + V MA + +++A NK D
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 229 AADIERTKNMLLAQGIT--VEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGIT 286
A + L + + + S+ + + E
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE------------ 169
Query: 287 VEDLGGDIQAVPISALTGTNVD 308
L ++ + SA G
Sbjct: 170 FSQLPLKVEFLECSAKGGRGDT 191
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 66.7 bits (161), Expect = 2e-13
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNT--SVVKSEFGGITQHIGAF---------VVTLKSG 162
V G + GK++ L+TL N S+ G TQ I F +
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 163 EQVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAI 222
+V +V+++ + + + I A ++ + ++V +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 223 NKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
K DK K L V GD+Q S+L VD L + ++
Sbjct: 135 TKADK--LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 64.0 bits (154), Expect = 2e-12
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 13/171 (7%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSV-VKSEFGGITQHIGAFVVTLKSGEQVTFLDTP 171
+ I+G + GK+TLL+ L + + S T+H + T + + +
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 172 GH------AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAR-EAKVPIIVAINK 224
H ++ + D+ +++ + E + E K P+I+A+NK
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNK 122
Query: 225 IDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+D LL + + VPISA TG NVD + + +
Sbjct: 123 VDNVQEK-----ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 168
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 62.3 bits (150), Expect = 5e-12
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 20/167 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA-- 175
+ I+G + GK+TLL+ L N T + G +DT G +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 176 ------FSNMRSRGA-HCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228
R+ DIV+ V+ A + E+ + + + + +++ + +
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK 122
Query: 229 AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ E LG D V ISAL G ++ L E+I R
Sbjct: 123 INEEEIK-----------NKLGTDRHMVKISALKGEGLEKLEESIYR 158
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 60.2 bits (145), Expect = 3e-11
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 17/173 (9%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ I+G GK++LL + + I +++ + ++ DT G F
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVP-----IIVAINKIDKPAAD 231
+ V+LV +++ E ++ NKIDK +
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE 129
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIERTKNML 280
++R + + A+ + + SA T V L E I +T +
Sbjct: 130 VDRNEGLKFAR-------KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 60.0 bits (144), Expect = 4e-11
Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 20/172 (11%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--- 172
V ++G+ + GK++LL + + + T VV + E+ T D PG
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
Query: 173 --HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVES-------IRMAREAKVPIIVAIN 223
H VL+ D + P +VA+N
Sbjct: 62 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 224 KIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
K+D + + LA+ + +P+SALTG + L EA+
Sbjct: 122 KVDLLEEEAVKALADALAR--------EGLAVLPVSALTGAGLPALKEALHA 165
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 59.4 bits (143), Expect = 6e-11
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G GKT +L + + I + L ++ DT G F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 177 SNMRSRGAHCTDIVVLVVAADDG----VMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+ + ++LV + + + +I A V ++ NK D
Sbjct: 69 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN---D 125
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+R + + + ++ I+ + SA NV+N + R
Sbjct: 126 KRQVSKERGEKLALD---YGIKFMETSAKANINVENAFFTLAR 165
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 58.6 bits (141), Expect = 1e-10
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 8/166 (4%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLD 169
+MK + ++G GK+ LL S I V + + ++ D
Sbjct: 2 IMK----ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 57
Query: 170 TPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPA 229
T G F + + ++LV D ++ + + +
Sbjct: 58 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 117
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
R + + E I + SA NV+ + + +
Sbjct: 118 DMETRVVTADQGEALAKE---LGIPFIESSAKNDDNVNEIFFTLAK 160
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 58.8 bits (141), Expect = 1e-10
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPG--- 172
V ++G GK+TLL + + +++ T +V G D PG
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 173 --HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
H H V+V D +E + + ++P
Sbjct: 62 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-Q 120
Query: 231 DIERTKNMLLAQGITVED----LGGDIQAVPISALTGTNVDNLTEAIER 275
I K + +E L D PISA+T + L +
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 58.2 bits (139), Expect = 1e-10
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 15/163 (9%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+T++G GKTT ++ + +F F + + VT
Sbjct: 5 LTLVGLQYSGKTTFVNVI-----ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 59
Query: 178 NMRSRGAHCTDIVVLVVAAD-------DGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
+C + +V D + + + + +P++V NK D P A
Sbjct: 60 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119
Query: 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
E+ + + +I IS N+D + +
Sbjct: 120 LDEKELIEKMNLSAIQD---REICCYSISCKEKDNIDITLQWL 159
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 57.6 bits (138), Expect = 3e-10
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
V ++G GK+ LL I + + + DT G +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 177 SNMRSRGAHCTDIVVLVVAADD----GVMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+ S +LV +E+ ++ +R ++ + I++ NK D
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 126
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
T ++ + SAL TNV+ + I
Sbjct: 127 VPTDEARAFAEKN------NLSFIETSALDSTNVEEAFKNI 161
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 59.1 bits (142), Expect = 3e-10
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-------------- 163
V ++GH GKTTL + L + K G + + T ++
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 64
Query: 164 ---QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIV 220
+V LD PG+ F D ++ V+A+ GV T + +A +P +V
Sbjct: 65 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV 124
Query: 221 AINKIDKPAADIERTKNM 238
+ K+DK +++
Sbjct: 125 VVTKLDKGGDYYALLEDL 142
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 56.4 bits (135), Expect = 8e-10
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 13/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G+ GKT L+ + I V + + ++ DT G F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 177 SNMRSRGAHCTDIVVLVVAADDGV-----MEQTVESIRMAREAKVPIIVAINKIDKPAAD 231
++ + ++L E E + A + ++V +
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 127
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ + + ++ D+ + SA NV+ L +
Sbjct: 128 VSQQRAEEFSE-------AQDMYYLETSAKESDNVEKLFLDL 162
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 56.7 bits (135), Expect = 8e-10
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 116 PVVTIMGHVDHGKTTLLDTLRNTSVVK--SEFGGITQH---------IGAFVVTLKSGEQ 164
P + + G + GK++ +++L N + S G TQ + V +
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83
Query: 165 VTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
V+ + VV +V V+ + +P+IV K
Sbjct: 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143
Query: 225 IDK-PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
DK P ++ ++ ++ + + + S+ T D AI++
Sbjct: 144 ADKIPKGKWDKHAKVVRQT----LNIDPEDELILFSSETKKGKDEAWGAIKK 191
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 54.0 bits (130), Expect = 1e-09
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 329 GPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAWAKVRS 374
P I+E K +T G A++ G L+K + + + +
Sbjct: 3 SPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVIST 48
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 55.5 bits (132), Expect = 1e-09
Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 20/180 (11%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
V I+G + GK+TL + L + G+T+ V
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 177 SNMRSRGAHC--------TDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKP 228
++ S+ D+V+ VV G+ ++ R++ V I+ NK +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 229 AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVE 288
K L + G + +P+SA N+D + E I L +G+ +E
Sbjct: 123 REFEREVKPELYSLGFG--------EPIPVSAEHNINLDTMLETI---IKKLEEKGLDLE 171
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 55.9 bits (133), Expect = 1e-09
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170
L K+ + +G + GKTTLL L++ + + T H + +T+ TF
Sbjct: 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIAGMTFTTFDLG 65
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIR----MAREAKVPIIVAINKID 226
A ++ IV LV AD + ++ E + A VPI++ NKID
Sbjct: 66 GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125
Query: 227 KP-AADIERTKNMLLAQGITVEDLGG--------DIQAVPISALTGTNVDN----LTEAI 273
+P A ER + M G T ++ S L + + I
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
Query: 274 E 274
+
Sbjct: 186 D 186
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 54.7 bits (130), Expect = 2e-09
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 15/166 (9%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ +G + GKTTLL L+N + L G + T D GH
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN-----DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57
Query: 177 SNMRSRGAHCTDIVVLVVAADD-----GVMEQTVESIRMAREAKVPIIVAINKIDKPAA- 230
+ + +V +V A D + +A VP ++ NKID P A
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 231 DIERTKNMLLAQGITVEDLGG---DIQAVPISALTGTNVDNLTEAI 273
++ L T ++ S + + +
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 55.5 bits (133), Expect = 1e-08
Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 10/150 (6%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTS-----VVKSEFGGITQHIGAFVVTLKSGEQVTF 167
V + G GK++ ++TLR K+ +T + V F
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVF 111
Query: 168 LDTPG---HAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINK 224
D PG + + ++ + + ++ + K K
Sbjct: 112 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTK 171
Query: 225 IDKPAADIERTKNMLLAQGITVEDLGGDIQ 254
+D + + + ++D+ +
Sbjct: 172 VDSDITNEADGEPQTFDKEKVLQDIRLNCV 201
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 52.2 bits (124), Expect = 2e-08
Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 3/159 (1%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
++G+ GK+ LL I G+ ++ + ++ DT G F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236
++ +LV + + + I +
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE 127
Query: 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
L ++ + + SALTG NV+ R
Sbjct: 128 VTFLEASRFAQENE--LMFLETSALTGENVEEAFVQCAR 164
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 51.7 bits (122), Expect = 3e-08
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 2/162 (1%)
Query: 114 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
V I+G + GK+TLL+ L V T + + Q+ F+DTPG
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Query: 174 AAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIE 233
+ L + E + +
Sbjct: 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123
Query: 234 RTKNMLLAQGIT--VEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ + +L + + +SAL V L +
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADL 165
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 51.5 bits (122), Expect = 3e-08
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 14/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF- 176
+ ++G + GKTTLL L + IT G + +++S + G
Sbjct: 19 ILLLGLDNAGKTTLLKQL-----ASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM-----AREAKVPIIVAINKIDKPAAD 231
TDI++ V+ + D + + + VP+++ NK D A
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
L + Q SALTG V + +
Sbjct: 134 PASEIAEGLNLHTIRD---RVWQIQSCSALTGEGVQDGMNWV 172
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 50.1 bits (118), Expect = 9e-08
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G + GKTT+L V T + + + D G +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTI---SPTLGFNIKTLEHRGFKL-NIWDVGGQKSLR 60
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTV-----ESIRMAREAKVPIIVAINKIDKPAADI 232
+ TD ++ VV + D Q + R A +++ NK D P A
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
L + SA+TG ++ + +
Sbjct: 121 CNAIQEALELDSIRS---HHWRIQGCSAVTGEDLLPGIDWL 158
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 48.7 bits (115), Expect = 3e-07
Identities = 19/157 (12%), Positives = 43/157 (27%), Gaps = 3/157 (1%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ I+G+ GKT+ L + S + + + ++ DT G +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236
+ + +L+ + V+ + + + +
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 127
Query: 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ LG + SA NV E +
Sbjct: 128 VSSERGRQLADHLG--FEFFEASAKDNINVKQTFERL 162
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 48.8 bits (115), Expect = 3e-07
Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 14/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ I+G GKTT+L L+ E IG V TL ++ D G +
Sbjct: 20 ILILGLDGAGKTTILYRLQI-----GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSI 74
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVM-----EQTVESIRMAREAKVPIIVAINKIDKPAAD 231
T V+ VV + D ++ ++ ++V NK D+P A
Sbjct: 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ L VE V SA+ G + + +
Sbjct: 135 SASEVSKELNL---VELKDRSWSIVASSAIKGEGITEGLDWL 173
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 48.6 bits (114), Expect = 3e-07
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 6/159 (3%)
Query: 118 VTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175
V I G + GK++LL+ L R ++V G + G + +DT G
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL--REHIHIDGMPLHIIDTAGLRE 61
Query: 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERT 235
S+ R + A M + A++ K + R
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFM-VDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120
Query: 236 KNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIE 274
K + + + + ++ G + +SA TG VD L ++
Sbjct: 121 KADITGETLGMSEVNGH-ALIRLSARTGEGVDVLRNHLK 158
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 48.0 bits (113), Expect = 4e-07
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 13/164 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
I+G + GK+ LL + I G ++ + + ++ DT G F
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 177 SNMRSRGAHCTDIVVLVVAADDG----VMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+ ++V + + R II+ NK D A
Sbjct: 67 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD 126
Query: 233 ERTKNML-LAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ A+ + + SA TG NV++ +
Sbjct: 127 VTYEEAKQFAEEN-------GLLFLEASAKTGENVEDAFLEAAK 163
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 48.3 bits (114), Expect = 6e-07
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 11/163 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G+ GK+ LL + + I V L ++ DT G F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 177 SNMRS---RGAHCTDIVVLVVAADDGV-MEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+ S RG+H IV V + ++ ++ I + V ++ NK
Sbjct: 69 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK------CD 122
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ K ++ + + SAL TNV++ + R
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 47.3 bits (111), Expect = 7e-07
Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 14/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G GKTT+L L E IG V T++ T D G
Sbjct: 3 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57
Query: 177 SNMRSRGAHCTDIVVLVVAADD-----GVMEQTVESIRMAREAKVPIIVAINKIDKPAAD 231
+ T ++ VV ++D E+ + + ++V NK D P A
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
L + A +G + + +
Sbjct: 118 NAAEITDKLGL---HSLRHRNWYIQATCATSGDGLYEGLDWL 156
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 46.5 bits (109), Expect = 2e-06
Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 13/170 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ I+G GKT LL + + ++ A + ++ DT G +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 178 NMRSRGAHCTDIVVLVVAAD-----DGVMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+R TD++++ + D + + E+ ++ VPII+ NK D +
Sbjct: 65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEH 123
Query: 233 ERTKNMLLAQGITVEDLG-------GDIQAVPISALTGTNVDNLTEAIER 275
R + + Q + G G + SA T V + E R
Sbjct: 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 45.9 bits (107), Expect = 3e-06
Identities = 37/171 (21%), Positives = 50/171 (29%), Gaps = 14/171 (8%)
Query: 112 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG-AFVVTLKSGEQVTFLDT 170
M R + I+G GKTT+L L E IG + D
Sbjct: 2 MTREMRILILGLDGAGKTTILYRL-----QVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 56
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVM-----EQTVESIRMAREAKVPIIVAINKI 225
G + TD V+ VV + D + V + K ++V NK
Sbjct: 57 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116
Query: 226 DKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276
D A L Q SA GT +D E + T
Sbjct: 117 DMEQAMTSSEMANSLGL---PALKDRKWQIFKTSATKGTGLDEAMEWLVET 164
Score = 32.0 bits (71), Expect = 0.12
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 291 GGDIQAVPISALTGTNVDNLTEAIVAQ 317
Q SA GT +D E +V
Sbjct: 138 DRKWQIFKTSATKGTGLDEAMEWLVET 164
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 45.2 bits (106), Expect = 5e-06
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 14/165 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTF--LDTPGHAA 175
V ++G GKT LL ++ + + F V G +V DT G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 176 FSNMRS---RGAHCTDIVVLVVAAD--DGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
F ++ R AH ++ V D + E A+ +++
Sbjct: 69 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 128
Query: 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
++R LA+ + + SA TG NVD AI +
Sbjct: 129 VVKREDGEKLAKEY-------GLPFMETSAKTGLNVDLAFTAIAK 166
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 44.6 bits (104), Expect = 9e-06
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V I+G + GKTT+L VV + + + + D G +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHT----SPTIGSNVEEIVINNTRFLMWDIGGQESLR 73
Query: 178 NMRSRGAHCTDIVVLVVAADD-----GVMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+ + T+ V++VV + D E+ + + K +++ NK D
Sbjct: 74 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 133
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ L + ALTG + E +
Sbjct: 134 VAEISQFLKLTSIKD---HQWHIQACCALTGEGLCQGLEWM 171
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 41.5 bits (96), Expect = 8e-05
Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 14/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G GKTT+L L+ + +G V T+ + D G
Sbjct: 15 ILMLGLDAAGKTTILYKLKL-----GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVES-----IRMAREAKVPIIVAINKIDKPAAD 231
+ T ++ VV D I I++ NK D P A
Sbjct: 70 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
L + + P A +G + +
Sbjct: 130 KPHEIQEKLGLTRIRD---RNWYVQPSCATSGDGLYEGLTWL 168
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.1 bits (95), Expect = 1e-04
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
++G GKT LL + + + + A V+ + DT G +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVES----IRMAREAKVPIIVAINKIDKPAADIE 233
+R TD+ ++ + + V + PII+ K+D
Sbjct: 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT 127
Query: 234 RTKNMLLAQGITVEDLG-------GDIQAVPISALTGTNVDNLTEAIER 275
K G G ++ + SALT + + + R
Sbjct: 128 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 39.9 bits (92), Expect = 3e-04
Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 12/167 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-----------QVT 166
+ +G GKTT L + + V + +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 167 FLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKID 226
DT G F ++ + +L+ V + +A +
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 127
Query: 227 KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
AD+ + + Q + D G I SA TG NV+ E +
Sbjct: 128 GNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETL 173
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 39.6 bits (91), Expect = 4e-04
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 12/163 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G GK+ L L V I VV + LDT G +S
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESI-----RMAREAKVPIIVAINKIDKPAADI 232
MR + + + V A ++ + + R+ VP+++ NK D A +
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV 125
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
E + LA+ I + SA T V++ + R
Sbjct: 126 ESRQAQDLARSY-------GIPYIETSAKTRQGVEDAFYTLVR 161
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 39.5 bits (91), Expect = 4e-04
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 11/163 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
I+G GK+ LL + I GA +V + + ++ DT G +F
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTV----ESIRMAREAKVPIIVAINKIDKPAADI 232
++ +LV + E R + + I++ NK D +
Sbjct: 66 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL---ES 122
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
R + E + + SA T NV+ +
Sbjct: 123 RRDVKREEGEAFAREH---GLIFMETSAKTACNVEEAFINTAK 162
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 39.2 bits (90), Expect = 5e-04
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 13/164 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V ++G GK+ L V+ VV Q+ LDT G ++
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTV-----ESIRMAREAKVPIIVAINKID-KPAAD 231
+R + + V + + + +R+ + VP ++ NK D +
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + A ++ V SA T NVD + + R
Sbjct: 127 VSVEEAKNRADQW-------NVNYVETSAKTRANVDKVFFDLMR 163
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 38.0 bits (87), Expect = 0.001
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V ++G GK+ L + ++ I + S + LDT G F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVES-----IRMAREAKVPIIVAINKIDKPAADI 232
+MR +LV + + Q ++ IR+ R KVP+I+ NK+D +
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD-----L 120
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
E + + ++G + + G + SA + T VD L I R
Sbjct: 121 ESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVR 162
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 37.3 bits (85), Expect = 0.002
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 11/169 (6%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
++G GKT LL + + + V+ + DT G +
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 65
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVES----IRMAREAKVPIIVAINKIDKPAADIE 233
+R TD+ ++ + + V+ K P ++ +ID
Sbjct: 66 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPST 125
Query: 234 RTKNMLLAQGITVEDLG-------GDIQAVPISALTGTNVDNLTEAIER 275
K Q + ++ V SALT + N+ +
Sbjct: 126 IEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 36.6 bits (83), Expect = 0.003
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 8/161 (4%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
+ ++G GK++++ N E + V + + DT G F
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 177 SNMRSRGAHCTDIVVLVVAADDG----VMEQTVESIRMAREAKVPIIVAINKIDKPAADI 232
+++ ++V V+ + + I + NKID
Sbjct: 66 ASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGG 125
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
ER + + E + SA TG NV+++ I
Sbjct: 126 ERKVAREEGEKLAEEK---GLLFFETSAKTGENVNDVFLGI 163
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 34.9 bits (79), Expect = 0.013
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 13/162 (8%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
V ++G GKT+L+ N K + + + DT G F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 177 SNMRSRGAHCTDIVVLVVAADDG-----VMEQTVESIRMAREAKVPIIVAINKIDKPAAD 231
+ ++ +LV D V E +M IV +
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 125
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ + A+ + + SA ++ L +
Sbjct: 126 VSIQEAESYAESV-------GAKHYHTSAKQNKGIEELFLDL 160
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 34.3 bits (77), Expect = 0.019
Identities = 18/158 (11%), Positives = 35/158 (22%), Gaps = 2/158 (1%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V ++G GK+ L H + + E +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKN 237
++V + S + + + I
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 238 MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + D + + SA NV L E + R
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159
Score = 28.9 bits (63), Expect = 1.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 293 DIQAVPISALTGTNVDNLTEAIVAQ 317
D + + SA NV L E +V Q
Sbjct: 136 DCKFIETSAALHHNVQALFEGVVRQ 160
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 34.6 bits (78), Expect = 0.020
Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 15/180 (8%)
Query: 108 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTF 167
++++K ++G GKT LL + N + + + H V +
Sbjct: 6 GALMLK----CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 61
Query: 168 LDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTV----ESIRMAREAKVPIIVAIN 223
DT G + +R TD+ ++ + + Q V VP ++
Sbjct: 62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 121
Query: 224 KID-------KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERT 276
+ID + + K + + QG + G V SALT + + +
Sbjct: 122 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.9 bits (76), Expect = 0.026
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 12/162 (7%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
+ ++G GKTT + K + T + + DT G F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREA---KVPIIVAINKIDKPAADIE 233
+R +++ V + V + +PI++ NK+D ++
Sbjct: 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK 125
Query: 234 RTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + ++Q ISA + N + + R
Sbjct: 126 AKSIVFHRKK--------NLQYYDISAKSNYNFEKPFLWLAR 159
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.9 bits (79), Expect = 0.029
Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 42/214 (19%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNT-------------SVVKSEFGGITQHIGAFVVTL 159
R V I G GK+T +D L + + GG + L
Sbjct: 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARL 108
Query: 160 KSGEQVTFLDTPGHAAFSNMRSRGAHCTDI-------VVLVVAADDGVMEQTVESIR--- 209
+P + ++ + V+LV G E V +
Sbjct: 109 AIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFF 168
Query: 210 ---------------MAREAKVPIIVAINKIDKP----AADIERTKNMLLAQGITVEDLG 250
++ ++A+NK D A ++ +T
Sbjct: 169 LVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSAT 228
Query: 251 GDIQAVPISALTGTNVDNLTEAIERTKNMLLAQG 284
V IS L G +D+L IE ++ L A G
Sbjct: 229 WTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATG 262
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 33.8 bits (76), Expect = 0.029
Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G GK+ L V+ I V + LDT G F+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESI-----RMAREAKVPIIVAINKIDKPAADI 232
MR LV + ++ + R+ VP+I+ NK D +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDN----LTEAIER 275
+ + + + SA + NV+ L I R
Sbjct: 126 VGKEQG-----QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 33.8 bits (76), Expect = 0.032
Identities = 17/164 (10%), Positives = 48/164 (29%), Gaps = 14/164 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G GK++L+ + + + + + T L A +
Sbjct: 8 LGVLGDARSGKSSLIHRF-----LTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 62
Query: 178 NMRSRGAHCTDIVVLVVAADDGVME------QTVESIRMAREAKVPIIVAINKIDKPAAD 231
++ + D+ + + S+R + + + + A
Sbjct: 63 PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA-- 120
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + A+ + A G NVD + + + +
Sbjct: 121 -SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 163
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.0 bits (74), Expect = 0.050
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V + G GK++L+ + +S + + KS + DT G F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 64
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRM------AREAKVPIIVAINKIDK-PAA 230
M+ +LV + + ++ I +PI++ NK D+ P+
Sbjct: 65 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 124
Query: 231 DIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+++ ++ LA+ + SA NV L + +
Sbjct: 125 EVQSSEAEALARTW-------KCAFMETSAKLNHNVKELFQEL 160
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 33.7 bits (76), Expect = 0.061
Identities = 31/217 (14%), Positives = 60/217 (27%), Gaps = 49/217 (22%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTL------------------------RNTSVVKSEFGGI 148
+ + G GK+T L+ + K+ +
Sbjct: 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL 111
Query: 149 TQHIGAFVVTL---------------------KSGEQVTFLDTPGHAAFSNMRSRGAHCT 187
+ AF+ + +G V ++T G +R C
Sbjct: 112 ARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCF 171
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKNMLLAQGITVE 247
+ + A G Q ++ + A + +I + + I R + +
Sbjct: 172 ---ISLQIAGGGDDLQGIK-KGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRK 227
Query: 248 DLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQG 284
+ + SAL +D + AI K L A G
Sbjct: 228 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 264
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.1 bits (74), Expect = 0.064
Identities = 34/168 (20%), Positives = 53/168 (31%), Gaps = 14/168 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVK--SEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAA 175
V I+G GKT+L+ N + G V + DT G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 176 FSNMRSRGAHCTDIVVLVVAADDG--------VMEQTVESIRMAREAKVPIIVAINKIDK 227
F ++ D VLV + ++ + + P ++ NKID
Sbjct: 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 124
Query: 228 PAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ ++ ++ GDI SA NVD E I R
Sbjct: 125 EESKKIVSEKSAQELAKSL----GDIPLFLTSAKNAINVDTAFEEIAR 168
Score = 29.3 bits (64), Expect = 0.96
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 292 GDIQAVPISALTGTNVDNLTEAIVAQA 318
GDI SA NVD E I A
Sbjct: 144 GDIPLFLTSAKNAINVDTAFEEIARSA 170
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 32.2 bits (72), Expect = 0.092
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
V ++G GK++L++ N + + + + + DT G F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 177 SNMRSRGAHCTDIVVLVVAADDGV--------MEQTVESIRMAREAKVPIIVAINKIDKP 228
++R+ +D +L + DD ++ + + P ++ NKID
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128
Query: 229 AADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + + GD SA TNV E R
Sbjct: 129 ERQVSTEEAQAWCRDN------GDYPYFETSAKDATNVAAAFEEAVR 169
Score = 26.8 bits (58), Expect = 5.9
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 292 GDIQAVPISALTGTNVDNLTEAIVAQA 318
GD SA TNV E V +
Sbjct: 145 GDYPYFETSAKDATNVAAAFEEAVRRV 171
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.5 bits (70), Expect = 0.18
Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
+ +G GKT+L+ ++ + + + ++ DT G F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 177 SNMRSRGAHCTDIVVLVVAADDGV----MEQTVESIRMAREAKVPIIVAINKID-KPAAD 231
++ + V+V + + ++ +R R + V I++ NK D
Sbjct: 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQ 122
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + A+ + ++ + SA G NV L +
Sbjct: 123 VSIEEGERKAKEL-------NVMFIETSAKAGYNVKQLFRRVAA 159
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 31.7 bits (70), Expect = 0.19
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 14/166 (8%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
V ++G GK+TL + + + GE T +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTV--------ESIRMAREAKVPIIVAINKIDKPA 229
HC + + + + R + +PII+ NK D
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 125
Query: 230 ADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ D + + SA NV L E I R
Sbjct: 126 CREVSVSEGRACAVV------FDCKFIETSAAVQHNVKELFEGIVR 165
Score = 27.0 bits (58), Expect = 4.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 293 DIQAVPISALTGTNVDNLTEAIVAQ 317
D + + SA NV L E IV Q
Sbjct: 142 DCKFIETSAAVQHNVKELFEGIVRQ 166
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 30.4 bits (68), Expect = 0.21
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 324 KADYGGPVEAMIVESKFDTHRGKLATALVQRGTLKKGAIVVAGQAW 369
+ GP A + + + D G++A + RG LK G + +
Sbjct: 3 ERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ 48
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.1 bits (69), Expect = 0.22
Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 3/159 (1%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFLDTPGHAAF 176
+ ++G GK++L+ + + I V L + DT G +
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236
++ ++V + ++ + + + I A +
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128
Query: 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+D + + SA T NV+ + AI +
Sbjct: 129 VDFQEAQSYADDNS--LLFMETSAKTSMNVNEIFMAIAK 165
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.2 bits (69), Expect = 0.22
Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 13/164 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G GK+ L + V I V ++ LDT G F
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIR------MAREAKVPIIVAINKIDKPAAD 231
MR + + +LV + D + + + R+ I++
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
Query: 232 IERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + + LA+ + + + SA NVD + R
Sbjct: 128 VTQEEGQQLARQL-------KVTYMEASAKIRMNVDQAFHELVR 164
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 30.6 bits (68), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 459 SKHGRIYLIGDVDGSVEALLDVFDT--YTSALCRL----DIVHYG 497
SK+ I+++GD+ G L++ DT + + L D+V G
Sbjct: 10 SKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRG 54
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 30.2 bits (67), Expect = 0.60
Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 30/229 (13%)
Query: 116 PVVTIMGHVDHGKTTLLDTL------RNTSVVKSEFGGIT------QHIGAFVVTLKSGE 163
V + G + GKTTLL + +V+++EFG ++ + TL +G
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC 63
Query: 164 -----QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPI 218
D + + ++ AD G + QT S + + +
Sbjct: 64 ICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLD 123
Query: 219 IVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKN 278
V I +D AD + + + + D ++ E+
Sbjct: 124 GV-IALVDAVHADEQMNQFTIAQSQVGYAD------------RILLTKTDVAGEAEKLHE 170
Query: 279 MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIVAQAEIMHLKADY 327
L + + L TN L E +V+ H AD
Sbjct: 171 RLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADK 219
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 30.4 bits (68), Expect = 0.61
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 117 VVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGH 173
VV I+G GK+ L++ L + S T+ I + V +
Sbjct: 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTE 93
Query: 174 AAFSNMRSRGAHCTDIVVLVVA 195
+ + + I L V
Sbjct: 94 GLGDVEKGDNQNDSWIFALAVL 115
>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 30.0 bits (67), Expect = 0.62
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 644 PSIEFEPGDTIVCFVKNKVPQFTDWNPPG 672
P + + GD + KN + + G
Sbjct: 86 PQLHADVGDKVKIIFKNMATRPYSIHAHG 114
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.6 bits (65), Expect = 0.76
Identities = 35/177 (19%), Positives = 55/177 (31%), Gaps = 17/177 (9%)
Query: 104 PPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE 163
PP PS K + ++G GK+ L + V I
Sbjct: 1 PP--PSETHK----LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA 54
Query: 164 QVTFLDTPGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTV-----ESIRMAREAKVPI 218
++ LDT G F MR + +LV A +D V + +R+ P+
Sbjct: 55 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 114
Query: 219 IVAINKIDKPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
++ NK D + + + SA NVD E + R
Sbjct: 115 VLVGNKADLESQRQVPRSEA------SAFGASHHVAYFEASAKLRLNVDEAFEQLVR 165
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.3 bits (64), Expect = 0.89
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 293 DIQAVPISALTGTNVDNLTEAIVAQAE 319
+ + SA ++ I+ +AE
Sbjct: 140 NAAFLESSAKENQTAVDVFRRIILEAE 166
Score = 27.4 bits (59), Expect = 4.2
Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 1/156 (0%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ I+G+ GK++L V S I + + +DT G +S
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 66
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTKN 237
+ + +LV + + ++ I V + + D+ +
Sbjct: 67 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV 126
Query: 238 MLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ +G + + + SA ++ I
Sbjct: 127 ISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRI 161
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.3 bits (64), Expect = 0.90
Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 4/157 (2%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
+ ++G+ GK++++ + + + + ++ DT G F
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236
+ VLV + D + + S R A+V I + ++ +
Sbjct: 65 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSC 123
Query: 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAI 273
+ L ++ S NV + + +
Sbjct: 124 IKNEEAEGLAKRLK--LRFYRTSVKEDLNVSEVFKYL 158
Score = 26.6 bits (57), Expect = 7.1
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 293 DIQAVPISALTGTNVDNLTEAIVAQA 318
++ S NV + + + +
Sbjct: 137 KLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
maritima [TaxId: 2336]}
Length = 292
Score = 29.8 bits (67), Expect = 0.94
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 182 RGAHCTDIVVLVVAADDGVMEQTVE-SIRMAREAKVPIIVAINKIDKPAADIERTKNMLL 240
+ I V+V GV V+ S + + ++ + I K D+E T ML
Sbjct: 110 FLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGI-KSILDVEATFEMLE 168
Query: 241 AQGITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGITVEDLGGDIQAVPI- 299
I + + + S +G V + E K + + +E + P+
Sbjct: 169 TLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELE--KTLMVLNPVP 226
Query: 300 --SALTGTNVDNLTEAIVAQAEIM 321
+ ++ L E + E+
Sbjct: 227 EEYEIPHDEIERLLEK--IELEVE 248
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Haemophilus influenzae [TaxId: 727]}
Length = 144
Score = 28.4 bits (63), Expect = 1.7
Identities = 7/88 (7%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 6 DDHLYEVMMYVDNSVN--YDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSS 63
D + + + V+ ++ D + I D + +
Sbjct: 46 DLYEVVLNISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCP-------N 98
Query: 64 VIYDF--QVIIDIIQKSGMKYMVINPTN 89
+++ + +++ +++ + + ++P N
Sbjct: 99 MLFPYARELVSNLVNRGTFPALNLSPVN 126
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDG 199
P A + +G DI V+A
Sbjct: 89 PLQGALILLNLKGYDYPDIQRAVLAEKAD 117
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 28.6 bits (63), Expect = 2.0
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 188 DIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDK 227
DIV +V A + + + + P I+ +NK DK
Sbjct: 17 DIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADK 54
Score = 28.3 bits (62), Expect = 2.6
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 111 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDT 170
+ R I+G + GK+TL++ L ++ K+ G I +K G+++ LDT
Sbjct: 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT---GDRPGITTSQQWVKVGKELELLDT 164
Query: 171 PGHAAFSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAA 230
PG + + + + + V +R E + +D+
Sbjct: 165 PGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPE 224
Query: 231 DIE 233
DI
Sbjct: 225 DIA 227
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 28.5 bits (63), Expect = 2.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 644 PSIEFEPGDTIVCFVKNKVPQFTDWNPPGF 673
P++ E GD + KNK + + G
Sbjct: 60 PTLYAEVGDIMKVHFKNKAHKPLSIHAQGI 89
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.0 bits (61), Expect = 2.3
Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 3/159 (1%)
Query: 118 VTIMGHVDHGKTTLLDTL-RNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAF 176
V ++G GK++++ ++ + V + DT G F
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 177 SNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVAINKIDKPAADIERTK 236
+ + ++V T+++ P + + + +
Sbjct: 67 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE 126
Query: 237 NMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
M + + V SA N++ L I R
Sbjct: 127 VMERDAKDYADSIH--AIFVETSAKNAININELFIEISR 163
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 28.1 bits (61), Expect = 3.0
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 463 RIYLIGDVDGSVEALLDVFDTYTSALCRL----------DIVHYG 497
+ ++ ++ G++ AL +IV
Sbjct: 2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLF 46
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.9 bits (61), Expect = 3.4
Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 17/137 (12%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVVTLKSGEQVTFLDTP 171
+ +MG GK++ ++++ VV S F + + +DTP
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-FTLNIIDTP 88
Query: 172 GHAAFSNMRSRG---------AHCTDIVVLVVAADDGVMEQTVESIRMA------REAKV 216
G + D+++ V D ++ + + A +
Sbjct: 89 GLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 148
Query: 217 PIIVAINKIDKPAADIE 233
IVA+ D
Sbjct: 149 KAIVALTHAQFSPPDGL 165
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 26.9 bits (59), Expect = 3.8
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 299 ISALTGTNVDNLTEAIVAQAEIMHLKADYGGPVEAMIVESKFDTHRGKLATALVQRGTLK 358
I + GT + E++ + D GP+ A+ + D + G+L V GTL
Sbjct: 4 IPPIKGTTPEG---------EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLT 54
Query: 359 KGAIVVAGQAWAKVR 373
G+ V K R
Sbjct: 55 SGSYVYNTTKGRKER 69
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.4 bits (59), Expect = 4.6
Identities = 29/169 (17%), Positives = 46/169 (27%), Gaps = 7/169 (4%)
Query: 110 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGE-QVTFL 168
VL+K V I+G GKT+L++ N I V + +
Sbjct: 1 VLLK----VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
Query: 169 DTPGHAAFSNMRSRGAHCTDIVVLVVAADD--GVMEQTVESIRMAREAKVPIIVAINKID 226
DT G F ++ D VLV +A +
Sbjct: 57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116
Query: 227 KPAADIERTKNMLLAQGITVEDLGGDIQAVPISALTGTNVDNLTEAIER 275
+ + + +I SA NV+ + I R
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 165
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 265
Score = 27.4 bits (59), Expect = 6.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 620 SMKHLKEEVTSIKKELECGLRLEDPSIEFEPGDTIV 655
+ L ++ +I + + L P + EPG I
Sbjct: 226 PIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIA 261
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 6.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 113 KRPPVVTIMGHVDHGKTTLLDTLRN 137
K+ P++++ G G +T+ T
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.4 bits (60), Expect = 6.9
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 225 IDKPAADIERTKNMLLAQGITV---EDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLL 281
+ + + I + V +S D+ + + K+M+
Sbjct: 366 VKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYLKDMVK 423
Query: 282 AQ 283
A+
Sbjct: 424 AK 425
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 26.4 bits (58), Expect = 7.7
Identities = 8/86 (9%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 6 DDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSDHLYEVMMYVDNSVNYDRPSSVI 65
D + + + V S+ + I I + +++
Sbjct: 46 DVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCP-------NIL 98
Query: 66 YDF--QVIIDIIQKSGMKYMVINPTN 89
+ + + I ++ + + + P N
Sbjct: 99 FPYARECITSMVSRGTFPQLNLAPVN 124
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 26.4 bits (57), Expect = 8.1
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 463 RIYLIGDVDGSVEALLDVFDTYTSA-----LCRLDIVHYG 497
++ D+ GS+ A V + + + + D++++G
Sbjct: 3 KLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHG 42
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 26.5 bits (58), Expect = 8.3
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 4/120 (3%)
Query: 104 PPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA---FVVTLK 160
P + T+ G TT + + V++ + V
Sbjct: 77 PMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPL 136
Query: 161 SGEQVTFLDTPGHAAFSNMRSRGAHCTDI-VVLVVAADDGVMEQTVESIRMAREAKVPII 219
+ L GH + A V+ + DDG M + E I A + + ++
Sbjct: 137 RAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALV 196
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 26.9 bits (59), Expect = 8.7
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 35 IIDIIQKSDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQK--SGMKYM 83
+D D L+ VM Y+ D + D I + ++ ++++
Sbjct: 82 YLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFL 132
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 8.7
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 12/164 (7%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFLDTPGHAAFS 177
+ ++G GK+ L V I + LDT G FS
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 178 NMRSRGAHCTDIVVLVVAADDGVMEQTVES-----IRMAREAKVPIIVAINKIDKPAADI 232
MR + D ++V + D + V+ +R+ P+I+ NK+D
Sbjct: 67 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD------ 120
Query: 233 ERTKNMLLAQGITVEDLGGDIQAVPISALTGT-NVDNLTEAIER 275
+ +I + SA NVD + R
Sbjct: 121 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus
influenzae [TaxId: 727]}
Length = 236
Score = 26.5 bits (57), Expect = 9.4
Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 2/106 (1%)
Query: 118 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVVTLKSGEQVTFL--DTPGHAA 175
+ + L + + T A + ++ V G
Sbjct: 109 ICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYD 168
Query: 176 FSNMRSRGAHCTDIVVLVVAADDGVMEQTVESIRMAREAKVPIIVA 221
++ A + D + + + +AR+ +PI V
Sbjct: 169 CDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVF 214
>d1j33a_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Thermus thermophilus
[TaxId: 274]}
Length = 333
Score = 26.8 bits (59), Expect = 9.9
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 40/151 (26%)
Query: 190 VVLVVAADDGVMEQ---------TVESIR-----------MAREAKVPIIVAINKIDKPA 229
V+V AAD GV+ + T + + A A + V +
Sbjct: 46 AVVVAAADHGVVAEGVSAYPQEVTRQMVLNFLRGGAAINQFALAADCAVYVLDVGVVGEL 105
Query: 230 ADIERTKNMLLAQG---ITVEDLGGDIQAVPISALTGTNVDNLTEAIERTKNMLLAQGIT 286
D + G + A+T + A +A+G T
Sbjct: 106 PDHPGLLKRKVRPGTANLAQGP-----------AMTPEEAERALLAGREAARRAIAEGAT 154
Query: 287 VEDLGGD------IQAVPISALTGTNVDNLT 311
+ G A +AL G + +
Sbjct: 155 LLAAGDMGIGNTTAAAALTAALLGLPPEAVV 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,487,363
Number of extensions: 121199
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 158
Length of query: 673
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 582
Effective length of database: 1,158,166
Effective search space: 674052612
Effective search space used: 674052612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)