Query psy4666
Match_columns 828
No_of_seqs 375 out of 1354
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:40:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 2E-104 4E-109 894.7 39.2 403 2-487 60-489 (497)
2 PLN02914 hexokinase 100.0 5E-103 1E-107 880.9 38.8 401 2-487 60-487 (490)
3 PLN02596 hexokinase-like 100.0 3E-102 6E-107 875.2 39.6 402 2-487 61-484 (490)
4 PLN02362 hexokinase 100.0 3E-102 5E-107 879.2 38.7 402 2-487 60-498 (509)
5 KOG1369|consensus 100.0 8.1E-99 2E-103 837.4 34.9 404 1-487 49-467 (474)
6 PTZ00107 hexokinase; Provision 100.0 5.8E-97 1E-101 829.6 36.9 392 1-487 29-460 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 2.2E-80 4.7E-85 675.4 32.7 404 2-487 40-459 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 1.4E-54 3.1E-59 451.8 18.7 227 257-487 1-241 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 6.7E-48 1.5E-52 393.8 15.4 177 2-255 26-206 (206)
10 PF03727 Hexokinase_2: Hexokin 100.0 9.4E-41 2E-45 348.2 7.0 166 471-639 5-175 (243)
11 PLN02405 hexokinase 100.0 7E-38 1.5E-42 354.5 9.3 165 472-639 249-420 (497)
12 KOG1369|consensus 100.0 1.1E-37 2.4E-42 348.4 8.6 167 472-641 236-407 (474)
13 PLN02596 hexokinase-like 100.0 1.2E-37 2.7E-42 351.8 9.1 167 472-641 249-422 (490)
14 PLN02362 hexokinase 100.0 3.2E-37 6.8E-42 350.1 8.8 164 472-639 249-419 (509)
15 PLN02914 hexokinase 100.0 3.5E-37 7.5E-42 348.1 8.7 165 471-639 248-418 (490)
16 PTZ00107 hexokinase; Provision 100.0 5E-33 1.1E-37 313.5 8.0 152 472-639 242-398 (464)
17 COG5026 Hexokinase [Carbohydra 99.9 1.7E-27 3.6E-32 261.6 9.4 170 471-641 224-400 (466)
18 TIGR00744 ROK_glcA_fam ROK fam 99.9 1E-22 2.2E-27 217.4 24.9 269 42-468 1-280 (318)
19 COG1940 NagC Transcriptional r 99.9 1.8E-22 4E-27 215.5 25.2 266 37-468 4-277 (314)
20 PRK13310 N-acetyl-D-glucosamin 99.9 4.9E-22 1.1E-26 211.5 25.5 251 41-468 2-273 (303)
21 PRK09557 fructokinase; Reviewe 99.9 3.1E-21 6.7E-26 205.5 23.0 252 41-468 2-272 (301)
22 PRK09698 D-allose kinase; Prov 99.9 1.2E-20 2.7E-25 200.5 23.3 254 38-468 3-265 (302)
23 PRK05082 N-acetylmannosamine k 99.9 4.8E-20 1E-24 195.3 24.0 248 41-467 3-260 (291)
24 PRK13311 N-acetyl-D-glucosamin 99.8 3.7E-19 8.1E-24 186.1 20.9 230 40-443 1-251 (256)
25 PRK12408 glucokinase; Provisio 99.8 3.1E-19 6.7E-24 194.6 18.6 175 220-467 101-303 (336)
26 PRK00292 glk glucokinase; Prov 99.8 9.5E-18 2.1E-22 180.3 18.7 173 221-466 84-283 (316)
27 TIGR00749 glk glucokinase, pro 99.7 1.8E-16 3.8E-21 171.1 16.6 174 237-464 93-287 (316)
28 PRK14101 bifunctional glucokin 99.7 1E-15 2.2E-20 179.8 16.1 173 221-466 99-298 (638)
29 PF00480 ROK: ROK family; Int 99.7 6.9E-16 1.5E-20 151.6 12.0 169 43-338 1-179 (179)
30 PTZ00288 glucokinase 1; Provis 99.2 4.2E-10 9.1E-15 126.6 19.4 152 256-456 183-341 (405)
31 TIGR02707 butyr_kinase butyrat 99.0 5.7E-09 1.2E-13 115.6 18.1 62 405-469 259-322 (351)
32 PF01869 BcrAD_BadFG: BadF/Bad 98.9 2.6E-07 5.6E-12 97.7 21.9 157 238-470 90-250 (271)
33 PRK03011 butyrate kinase; Prov 98.7 1.1E-06 2.4E-11 97.9 20.5 66 405-474 261-328 (358)
34 COG2971 Predicted N-acetylgluc 98.6 6.9E-06 1.5E-10 89.2 22.8 261 39-464 5-273 (301)
35 KOG1794|consensus 98.3 8.4E-05 1.8E-09 80.4 22.3 82 405-486 224-316 (336)
36 PF02685 Glucokinase: Glucokin 98.1 9.2E-05 2E-09 81.5 16.6 164 233-456 90-271 (316)
37 smart00732 YqgFc Likely ribonu 97.8 5E-05 1.1E-09 68.1 6.9 59 40-115 2-61 (99)
38 PRK13318 pantothenate kinase; 97.3 0.0013 2.7E-08 70.1 10.4 63 41-113 2-64 (258)
39 COG0837 Glk Glucokinase [Carbo 97.2 0.038 8.2E-07 60.8 20.7 98 233-346 94-207 (320)
40 PRK00976 hypothetical protein; 97.2 0.019 4.2E-07 63.7 18.0 58 405-464 231-289 (326)
41 PF00370 FGGY_N: FGGY family o 96.2 0.015 3.2E-07 60.7 8.1 72 41-113 2-77 (245)
42 PRK13321 pantothenate kinase; 95.7 0.11 2.3E-06 55.6 12.0 50 41-99 2-51 (256)
43 TIGR01315 5C_CHO_kinase FGGY-f 95.1 0.068 1.5E-06 62.8 8.7 73 41-114 2-78 (541)
44 TIGR01314 gntK_FGGY gluconate 94.7 0.094 2E-06 60.9 8.5 71 41-113 2-76 (505)
45 TIGR01311 glycerol_kin glycero 94.5 0.1 2.2E-06 60.5 8.0 71 41-112 3-77 (493)
46 PRK10939 autoinducer-2 (AI-2) 94.2 0.12 2.7E-06 60.3 8.1 73 40-113 4-82 (520)
47 PRK00047 glpK glycerol kinase; 94.1 0.13 2.7E-06 59.8 7.7 73 40-113 6-82 (498)
48 TIGR01312 XylB D-xylulose kina 93.3 0.18 4E-06 57.6 7.1 70 42-112 1-74 (481)
49 TIGR01234 L-ribulokinase L-rib 93.1 0.24 5.2E-06 58.2 7.8 74 40-114 2-91 (536)
50 PRK15027 xylulokinase; Provisi 92.9 0.33 7.2E-06 56.2 8.5 70 40-112 1-74 (484)
51 PLN02295 glycerol kinase 92.8 0.31 6.7E-06 56.9 8.2 72 41-112 2-80 (512)
52 PTZ00294 glycerol kinase-like 92.8 0.36 7.7E-06 56.3 8.6 73 40-113 3-81 (504)
53 COG1070 XylB Sugar (pentulose 92.5 0.34 7.4E-06 56.6 8.0 72 40-112 5-81 (502)
54 PRK10331 L-fuculokinase; Provi 91.9 0.47 1E-05 54.7 8.1 71 40-113 3-79 (470)
55 TIGR02628 fuculo_kin_coli L-fu 90.9 0.65 1.4E-05 53.6 7.8 70 41-113 3-78 (465)
56 PRK04123 ribulokinase; Provisi 90.0 0.93 2E-05 53.3 8.3 73 40-113 4-87 (548)
57 PLN02669 xylulokinase 87.4 2 4.4E-05 51.1 8.7 76 31-112 3-96 (556)
58 PTZ00009 heat shock 70 kDa pro 87.3 1.5 3.4E-05 53.0 7.9 48 219-269 155-206 (653)
59 PTZ00186 heat shock 70 kDa pre 85.9 3.4 7.4E-05 50.3 9.8 38 19-60 11-48 (657)
60 PRK13324 pantothenate kinase; 85.2 13 0.00029 40.3 12.9 50 41-99 2-52 (258)
61 TIGR01174 ftsA cell division p 84.4 21 0.00046 40.0 14.5 52 216-270 156-209 (371)
62 PRK13410 molecular chaperone D 84.3 6 0.00013 48.3 10.8 47 219-268 150-198 (668)
63 TIGR00671 baf pantothenate kin 83.9 15 0.00032 39.5 12.4 43 42-89 2-44 (243)
64 PF07318 DUF1464: Protein of u 82.3 20 0.00044 40.7 13.1 55 427-485 249-314 (343)
65 PTZ00400 DnaK-type molecular c 82.0 5.3 0.00012 48.7 9.2 47 219-268 189-237 (663)
66 TIGR01175 pilM type IV pilus a 81.9 6.9 0.00015 43.0 9.3 74 40-117 4-79 (348)
67 PRK13928 rod shape-determining 80.2 5 0.00011 44.3 7.5 33 219-254 110-142 (336)
68 PRK00290 dnaK molecular chaper 79.7 4.9 0.00011 48.5 7.8 33 219-254 148-180 (627)
69 PRK13411 molecular chaperone D 79.6 7.3 0.00016 47.4 9.2 33 219-254 148-180 (653)
70 PF14700 RPOL_N: DNA-directed 79.5 1.1 2.4E-05 48.7 2.2 81 715-807 37-117 (318)
71 TIGR00904 mreB cell shape dete 79.1 38 0.00082 37.4 13.8 32 220-254 114-145 (333)
72 TIGR00241 CoA_E_activ CoA-subs 79.0 6.5 0.00014 41.7 7.6 50 41-101 2-51 (248)
73 TIGR02350 prok_dnaK chaperone 78.5 4.8 0.0001 48.1 7.1 33 219-254 145-177 (595)
74 KOG1038|consensus 78.1 3.7 8.1E-05 51.0 6.0 50 715-770 289-340 (1088)
75 PRK13927 rod shape-determining 77.4 25 0.00055 38.6 11.8 33 219-254 111-143 (334)
76 COG1069 AraB Ribulose kinase [ 76.4 5.5 0.00012 47.3 6.6 80 40-120 4-88 (544)
77 PRK05183 hscA chaperone protei 76.2 9.7 0.00021 46.1 8.9 33 219-254 164-196 (616)
78 PLN03184 chloroplast Hsp70; Pr 75.8 13 0.00029 45.4 9.9 33 219-254 187-219 (673)
79 CHL00094 dnaK heat shock prote 75.5 19 0.00042 43.5 11.1 33 219-254 150-182 (621)
80 PF06673 L_lactis_ph-MCP: Lact 72.5 7.2 0.00016 41.2 5.6 73 662-734 5-77 (347)
81 PF00349 Hexokinase_1: Hexokin 71.6 2.8 6.1E-05 43.9 2.5 25 158-182 157-181 (206)
82 PF11104 PilM_2: Type IV pilus 70.1 14 0.00031 40.9 7.8 63 43-105 1-65 (340)
83 TIGR02627 rhamnulo_kin rhamnul 69.7 7.9 0.00017 44.6 5.9 66 42-113 1-75 (454)
84 PRK13326 pantothenate kinase; 69.5 59 0.0013 35.5 12.1 44 40-88 7-50 (262)
85 PF00012 HSP70: Hsp70 protein; 67.5 3.5 7.5E-05 48.6 2.4 48 218-268 149-199 (602)
86 KOG0162|consensus 66.6 4 8.7E-05 49.8 2.6 63 171-251 409-473 (1106)
87 PRK09472 ftsA cell division pr 66.3 1.4E+02 0.003 34.5 14.9 51 217-270 165-217 (420)
88 PF03702 UPF0075: Uncharacteri 63.7 46 0.00099 38.2 10.2 190 52-338 16-230 (364)
89 PRK15080 ethanolamine utilizat 62.1 1.4E+02 0.0031 32.3 13.2 60 33-97 18-79 (267)
90 TIGR03286 methan_mark_15 putat 61.4 20 0.00044 41.5 6.9 56 35-101 140-195 (404)
91 smart00842 FtsA Cell division 60.7 39 0.00085 34.2 8.3 56 41-98 1-59 (187)
92 TIGR01991 HscA Fe-S protein as 60.4 28 0.0006 42.1 8.2 34 219-255 144-177 (599)
93 PF05378 Hydant_A_N: Hydantoin 57.2 35 0.00075 34.9 7.2 50 42-100 2-52 (176)
94 COG0554 GlpK Glycerol kinase [ 56.4 17 0.00038 42.9 5.3 71 39-110 5-81 (499)
95 PRK13930 rod shape-determining 54.6 40 0.00088 36.9 7.7 50 219-271 115-164 (335)
96 COG4972 PilM Tfp pilus assembl 54.6 28 0.00061 39.5 6.4 69 41-109 12-82 (354)
97 PRK13929 rod-share determining 53.3 1.2E+02 0.0027 33.6 11.3 45 220-267 114-158 (335)
98 KOG2517|consensus 50.6 58 0.0013 39.0 8.5 63 38-100 5-72 (516)
99 KOG0103|consensus 45.7 3.6E+02 0.0079 33.7 14.0 104 407-513 302-411 (727)
100 TIGR03192 benz_CoA_bzdQ benzoy 45.6 73 0.0016 35.6 7.8 52 40-101 33-84 (293)
101 COG5146 PanK Pantothenate kina 45.0 45 0.00098 36.5 5.9 74 238-319 122-199 (342)
102 PRK01433 hscA chaperone protei 45.0 1E+02 0.0022 37.4 9.6 33 219-254 156-188 (595)
103 TIGR02529 EutJ ethanolamine ut 43.9 2.8E+02 0.006 29.6 11.7 50 43-96 1-51 (239)
104 PF03309 Pan_kinase: Type III 38.0 3.9E+02 0.0085 27.7 11.5 19 41-59 1-19 (206)
105 PRK13320 pantothenate kinase; 37.6 64 0.0014 34.7 5.8 21 40-60 3-23 (244)
106 cd03199 GST_C_GRX2 GST_C famil 36.7 28 0.0006 34.4 2.6 37 725-761 60-102 (128)
107 cd00012 ACTIN Actin; An ubiqui 35.4 4.1E+02 0.0089 29.6 11.9 44 441-487 293-348 (371)
108 PF13041 PPR_2: PPR repeat fam 33.6 37 0.0008 26.9 2.5 37 770-806 13-49 (50)
109 COG0443 DnaK Molecular chapero 33.6 1E+02 0.0022 37.3 7.2 53 220-275 136-190 (579)
110 TIGR03123 one_C_unchar_1 proba 32.8 31 0.00067 38.8 2.6 51 393-444 234-284 (318)
111 COG1521 Pantothenate kinase ty 32.0 4.7E+02 0.01 28.8 11.2 44 41-89 2-45 (251)
112 TIGR00555 panK_eukar pantothen 32.0 77 0.0017 35.1 5.4 28 438-467 231-258 (279)
113 PRK13317 pantothenate kinase; 29.2 46 0.001 36.6 3.1 21 39-59 2-23 (277)
114 PF00022 Actin: Actin; InterP 28.7 3.9E+02 0.0084 29.9 10.3 39 233-276 121-159 (393)
115 PF14574 DUF4445: Domain of un 27.7 99 0.0022 36.1 5.5 20 42-61 4-25 (412)
116 COG3426 Butyrate kinase [Energ 27.5 6.6E+02 0.014 28.7 11.3 157 246-469 167-325 (358)
117 PF01968 Hydantoinase_A: Hydan 27.3 54 0.0012 36.1 3.2 21 40-60 78-98 (290)
118 TIGR03123 one_C_unchar_1 proba 27.0 48 0.001 37.3 2.8 23 38-60 127-149 (318)
119 KOG0104|consensus 26.9 1E+02 0.0022 38.7 5.5 200 41-277 24-235 (902)
120 PTZ00452 actin; Provisional 25.8 6.7E+02 0.015 28.6 11.6 153 42-276 8-165 (375)
121 COG1924 Activator of 2-hydroxy 24.9 1.9E+02 0.0041 33.7 6.9 53 38-101 134-186 (396)
122 PRK05571 ribose-5-phosphate is 24.7 84 0.0018 31.8 3.7 58 428-485 17-77 (148)
123 KOG4422|consensus 24.0 38 0.00083 39.8 1.3 20 788-807 266-285 (625)
124 PRK13331 pantothenate kinase; 23.9 2.5E+02 0.0055 30.7 7.4 22 39-60 7-28 (251)
125 TIGR01120 rpiB ribose 5-phosph 23.7 92 0.002 31.4 3.8 59 427-485 15-75 (143)
126 cd07613 BAR_Endophilin_A1 The 23.6 1.8E+02 0.0039 31.4 6.1 31 699-729 193-223 (223)
127 PRK00180 acetate kinase A/prop 23.4 1.1E+03 0.024 27.7 12.8 48 416-467 304-351 (402)
128 TIGR00689 rpiB_lacA_lacB sugar 23.4 94 0.002 31.3 3.8 62 424-485 11-74 (144)
129 smart00268 ACTIN Actin. ACTIN 23.2 3.1E+02 0.0066 30.6 8.2 44 441-487 295-348 (373)
130 TIGR02261 benz_CoA_red_D benzo 22.9 3.7E+02 0.0081 29.7 8.5 55 41-101 3-58 (262)
131 KOG3132|consensus 22.7 21 0.00046 38.8 -0.9 31 189-219 256-289 (325)
132 TIGR02259 benz_CoA_red_A benzo 22.5 1E+02 0.0022 36.2 4.3 22 40-61 3-25 (432)
133 COG0145 HyuA N-methylhydantoin 21.9 70 0.0015 39.6 3.0 26 35-60 274-299 (674)
134 PF06723 MreB_Mbl: MreB/Mbl pr 21.7 1E+02 0.0022 34.8 4.1 46 221-269 110-157 (326)
135 TIGR01119 lacB galactose-6-pho 20.4 1.2E+02 0.0025 31.6 3.9 58 428-485 17-76 (171)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.7e-104 Score=894.73 Aligned_cols=403 Identities=34% Similarity=0.612 Sum_probs=377.5
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc---eeEEEEEEEecCCCccc
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE---KFRMEHKTYPISPEIMT 77 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~---~~~~~~~~~~Ip~e~~~ 77 (828)
++|.+||++||+++ ..|+++||||||+++|+|+|+|.|||||||||||||++|+ .|+ .+++++++|+||+++|.
T Consensus 60 ~~f~~em~~GL~~~--~~s~l~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~ 137 (497)
T PLN02405 60 DAMTVEMHAGLASE--GGSKLKMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMT 137 (497)
T ss_pred HHHHHHHHHhhccC--CCCCcceeccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhcc
Confidence 68999999999975 3689999999999999999999999999999999999999 553 46778899999999999
Q ss_pred CCccchHHHHHHHHHHHHhhccCC-----CCccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCe
Q psy4666 78 GPGEQLFDYIAESLENFVREQKAE-----NEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPG 152 (828)
Q Consensus 78 g~~~~lFd~IA~~i~~fl~e~~~~-----~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 152 (828)
|++++||||||+||++|+++++.. .+.+||||||||||+|+++++ |
T Consensus 138 gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~-----------------------------g 188 (497)
T PLN02405 138 GSSDALFDFIAAALAKFVATEGEDFHLPPGRQRELGFTFSFPVKQTSISS-----------------------------G 188 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccccccCcccccccceeEeeeeccCCCCc-----------------------------e
Confidence 999999999999999999988632 256999999999999999999 9
Q ss_pred EEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCC
Q psy4666 153 VLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSN 232 (828)
Q Consensus 153 ~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~ 232 (828)
+| ++|||||++++++|+||+++|++||+|++
T Consensus 189 ~L------------------------------------------------i~WTKGF~~~~~vG~DVv~lL~~Al~r~~- 219 (497)
T PLN02405 189 TL------------------------------------------------IKWTKGFSIDDAVGQDVVGELTKAMERVG- 219 (497)
T ss_pred EE------------------------------------------------EEeccccccCCccCchHHHHHHHHHHHcC-
Confidence 99 99999999999999999999999999997
Q ss_pred CCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCCccCCCCccccccc
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLT 311 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG~FG~~G~l~~~~T 311 (828)
++|+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+++++ .+..++|+||||||+||.+ .+|+|
T Consensus 220 l~v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~---~lp~T 296 (497)
T PLN02405 220 LDMRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSS---HLPLT 296 (497)
T ss_pred CCceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCC---CCCCc
Confidence 9999999999999999999999999999999999999999999999999976 4567899999999999854 36899
Q ss_pred chhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHH
Q psy4666 312 EFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRN 391 (828)
Q Consensus 312 ~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~ 391 (828)
+||+.+|+.|.|||+|+||||+||+|||||+|++|++|++++.||+|..|+.|.++++|+|++|++|+.|++++++.+++
T Consensus 297 ~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~ 376 (497)
T PLN02405 297 EYDHALDVESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGS 376 (497)
T ss_pred hHHHHHhhcCCCCCcchhhHHHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CeEEEEEcCceeecchhHHHHHHHH
Q psy4666 392 VLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDF--------SIVTVGVDGSVYRYHPYFHHMMLEK 463 (828)
Q Consensus 392 il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~--------~~ItVGvDGSVy~~~p~f~~~L~e~ 463 (828)
+|++.|+++..+.+|++.+++||.+|++|||+|+||+|+||+++++. .+++||||||||++||.|+++++++
T Consensus 377 ~l~~~l~~~~~~~~~~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~ 456 (497)
T PLN02405 377 KLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMEST 456 (497)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHH
Confidence 99999999877889999999999999999999999999999999987 3699999999999999999999999
Q ss_pred HHhhccc-----ceee----ecccchhhhhccc
Q psy4666 464 IPALISH-----SVIV----GTGFNACYVERTE 487 (828)
Q Consensus 464 lreL~p~-----~~i~----GtG~nAAyv~~~~ 487 (828)
++++++. +.+. |||.|||+++++.
T Consensus 457 l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~ 489 (497)
T PLN02405 457 LKELLGEEVSESIEVEHSNDGSGIGAALLAASH 489 (497)
T ss_pred HHHHhCcccCceEEEEEecCchHHHHHHHHHHH
Confidence 9999852 3333 9999999998864
No 2
>PLN02914 hexokinase
Probab=100.00 E-value=5.1e-103 Score=880.91 Aligned_cols=401 Identities=38% Similarity=0.671 Sum_probs=374.8
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc---eeEEEEEEEecCCCccc
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE---KFRMEHKTYPISPEIMT 77 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~---~~~~~~~~~~Ip~e~~~ 77 (828)
++|.+||++||+++ ..|+++||||||+++|+|+|+|.|||||||||||||++|+ .|+ .+++.+++|+||++++.
T Consensus 60 ~~f~~em~~GL~~~--~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~ 137 (490)
T PLN02914 60 DAMAADMRAGLAVD--GGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMF 137 (490)
T ss_pred HHHHHHHHHHhccC--CCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhcc
Confidence 68999999999875 3689999999999999999999999999999999999999 553 56788999999999999
Q ss_pred CCccchHHHHHHHHHHHHhhccC-----CCCccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCe
Q psy4666 78 GPGEQLFDYIAESLENFVREQKA-----ENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPG 152 (828)
Q Consensus 78 g~~~~lFd~IA~~i~~fl~e~~~-----~~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 152 (828)
|++++||||||+||++|+++++. ..+.+||||||||||+|+++++ |
T Consensus 138 gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~-----------------------------g 188 (490)
T PLN02914 138 GTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDS-----------------------------G 188 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCc-----------------------------e
Confidence 99999999999999999998863 2346999999999999999999 9
Q ss_pred EEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCC
Q psy4666 153 VLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSN 232 (828)
Q Consensus 153 ~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~ 232 (828)
+| ++|||||+++|++|+||+++|++||+|++
T Consensus 189 ~L------------------------------------------------i~WTKGF~~~gv~G~DVv~lL~~Al~r~~- 219 (490)
T PLN02914 189 IL------------------------------------------------MKWTKGFAVSGTAGKDVVACLNEAMERQG- 219 (490)
T ss_pred EE------------------------------------------------EEeccccccCCccCchHHHHHHHHHHHcC-
Confidence 99 99999999999999999999999999997
Q ss_pred CCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCCccCCCCccccccc
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLT 311 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG~FG~~G~l~~~~T 311 (828)
++|+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+|+++ ....++|+||||||+|++ + +|+|
T Consensus 220 l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~-~---lp~T 295 (490)
T PLN02914 220 LDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFSD-G---LPLT 295 (490)
T ss_pred CCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccCC-C---CCCC
Confidence 9999999999999999999999999999999999999999999999999977 455789999999999964 2 6899
Q ss_pred chhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHH
Q psy4666 312 EFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRN 391 (828)
Q Consensus 312 ~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~ 391 (828)
+||+.+|+.|.|||+|+||||+||+|||||+|++|++|++++.||++..|+.|.++++|+|++|++|+.|+++++..++.
T Consensus 296 ~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~ 375 (490)
T PLN02914 296 EFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGS 375 (490)
T ss_pred hHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CeEEEEEcCceeecchhHHHHHHHH
Q psy4666 392 VLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDF--------SIVTVGVDGSVYRYHPYFHHMMLEK 463 (828)
Q Consensus 392 il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~--------~~ItVGvDGSVy~~~p~f~~~L~e~ 463 (828)
+|++.++++ ++.+|++.+++||.+|++|||+|+||+|+||+++++. ++++||||||||++||.|+++++++
T Consensus 376 ~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~ 454 (490)
T PLN02914 376 ILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDA 454 (490)
T ss_pred HHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHH
Confidence 999999996 8999999999999999999999999999999999876 3699999999999999999999999
Q ss_pred HHhhcc-----cceee----ecccchhhhhccc
Q psy4666 464 IPALIS-----HSVIV----GTGFNACYVERTE 487 (828)
Q Consensus 464 lreL~p-----~~~i~----GtG~nAAyv~~~~ 487 (828)
++++++ .+.+. |||.|||+++++.
T Consensus 455 l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~ 487 (490)
T PLN02914 455 VTELLGLELSKNIAIEHTKDGSGIGAALLAATN 487 (490)
T ss_pred HHHHhCcccCCcEEEEEccCchHHHHHHHHHHh
Confidence 999984 23332 9999999998764
No 3
>PLN02596 hexokinase-like
Probab=100.00 E-value=2.5e-102 Score=875.23 Aligned_cols=402 Identities=30% Similarity=0.541 Sum_probs=375.9
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc---eeEEEEEEEecCCCccc
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE---KFRMEHKTYPISPEIMT 77 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~---~~~~~~~~~~Ip~e~~~ 77 (828)
++|..||++||.++ ..|+++||||||+++|+|+|+|+|||||||||||||++|+ .|+ .+++.+++|+||++++.
T Consensus 61 ~~f~~em~~GL~~~--~~s~l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~ 138 (490)
T PLN02596 61 DALVSDMTASLTAE--ETTTLNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLN 138 (490)
T ss_pred HHHHHHHHHhhccC--CCCCCceecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhc
Confidence 68999999999864 4689999999999999999999999999999999999999 553 36778899999999999
Q ss_pred CCccchHHHHHHHHHHHHhhccCCC-----CccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCe
Q psy4666 78 GPGEQLFDYIAESLENFVREQKAEN-----EHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPG 152 (828)
Q Consensus 78 g~~~~lFd~IA~~i~~fl~e~~~~~-----~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 152 (828)
+++++||||||+||++|+++++... +.+||||||||||+|+++++ |
T Consensus 139 ~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~-----------------------------G 189 (490)
T PLN02596 139 GTSQELFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQAAASS-----------------------------G 189 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccccCcccccccceEEeeeeeecCCCC-----------------------------E
Confidence 9999999999999999999886533 35999999999999999999 9
Q ss_pred EEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCC
Q psy4666 153 VLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSN 232 (828)
Q Consensus 153 ~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~ 232 (828)
+| ++| |||++++++|+||+++|++|++|++
T Consensus 190 ~L------------------------------------------------i~W-KgF~~~~~vG~Dvv~lL~~Al~r~~- 219 (490)
T PLN02596 190 SA------------------------------------------------IKW-KSFSADDTVGKALVNDINRALEKHG- 219 (490)
T ss_pred EE------------------------------------------------EEe-ccccCCCccCcHHHHHHHHHHHhcC-
Confidence 99 899 9999999999999999999999997
Q ss_pred CCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCCccCCCCccccccc
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLT 311 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG~FG~~G~l~~~~T 311 (828)
++|+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+++++ .+..++|+||||||+|+.. .+|+|
T Consensus 220 l~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~---~lp~T 296 (490)
T PLN02596 220 LKIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSC---HLPIT 296 (490)
T ss_pred CCceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCC---CCCCC
Confidence 8999999999999999999999999999999999999999999999999976 4557899999999999742 47899
Q ss_pred chhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHH
Q psy4666 312 EFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRN 391 (828)
Q Consensus 312 ~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~ 391 (828)
+||+.||+.|.|||+|+||||+||+|||||+|++|+++++++.||++..|+.|.++|+|+|++|+.|+.|+++++..+++
T Consensus 297 ~~D~~lD~~S~nPG~Q~fEKMiSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~ 376 (490)
T PLN02596 297 EFDASLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNE 376 (490)
T ss_pred hHHHHHhccCCCCCcchHHHHHhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEEEEcCceeecchhHHHHHHHHHHhhc
Q psy4666 392 VLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDF---SIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 392 il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~---~~ItVGvDGSVy~~~p~f~~~L~e~lreL~ 468 (828)
+|.+.|+++.++.+|++.+++||.+|++|||+|+|++|+||+++++. .+++||||||||++||.|++++++++++++
T Consensus 377 ~l~~~l~~~~~~~~d~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ell 456 (490)
T PLN02596 377 KLKEIFGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEML 456 (490)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHh
Confidence 99999999888999999999999999999999999999999999974 469999999999999999999999999998
Q ss_pred c-----cceee----ecccchhhhhccc
Q psy4666 469 S-----HSVIV----GTGFNACYVERTE 487 (828)
Q Consensus 469 p-----~~~i~----GtG~nAAyv~~~~ 487 (828)
+ .+.+. |||.|||+++++.
T Consensus 457 g~~~~~~i~~~~s~DGSG~GAAl~AA~~ 484 (490)
T PLN02596 457 GSELSDNVVIEHSHGGSGAGALFLAACQ 484 (490)
T ss_pred CcccCCcEEEEEccCchhHHHHHHHHhh
Confidence 5 23443 9999999999864
No 4
>PLN02362 hexokinase
Probab=100.00 E-value=2.5e-102 Score=879.23 Aligned_cols=402 Identities=34% Similarity=0.608 Sum_probs=372.4
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc-eeEE--EEEEEecCCCccc
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE-KFRM--EHKTYPISPEIMT 77 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~-~~~~--~~~~~~Ip~e~~~ 77 (828)
++|.+||++||+++ .+|+++||||||+++|+|+|+|.|||||||||||||++|+ .|+ .+.+ ++++|+||+++|.
T Consensus 60 ~~f~~em~~GL~~~--~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~ 137 (509)
T PLN02362 60 DAMAVEMHAGLASE--GGSKLKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMN 137 (509)
T ss_pred HHHHHHHHHhhccC--CCCCCceecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhcc
Confidence 68999999999975 3689999999999999999999999999999999999999 653 2333 4578999999999
Q ss_pred CCccchHHHHHHHHHHHHhhccCC-----CCccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCe
Q psy4666 78 GPGEQLFDYIAESLENFVREQKAE-----NEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPG 152 (828)
Q Consensus 78 g~~~~lFd~IA~~i~~fl~e~~~~-----~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 152 (828)
+++++||||||+||++|+++++.. ...+||||||||||+|+++++ |
T Consensus 138 ~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q~si~~-----------------------------g 188 (509)
T PLN02362 138 STSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSISS-----------------------------G 188 (509)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCccccccccccccceeEEeeeeccCCCCc-----------------------------e
Confidence 999999999999999999998653 246999999999999999999 9
Q ss_pred EEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCC
Q psy4666 153 VLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSN 232 (828)
Q Consensus 153 ~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~ 232 (828)
+| ++|||||++++++|+||+++|++||+|++
T Consensus 189 ~L------------------------------------------------i~WtKGF~~~~v~G~DVv~lL~~Al~r~~- 219 (509)
T PLN02362 189 IL------------------------------------------------IKWTKGFAISDMVGKDVAECLQGALNRRG- 219 (509)
T ss_pred EE------------------------------------------------EEeccccccCcccCchHHHHHHHHHHHcC-
Confidence 99 99999999999999999999999999997
Q ss_pred CCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCCccCCCCccccccc
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLT 311 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG~FG~~G~l~~~~T 311 (828)
++|+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++++++++ .+..++|+||||||+||.+ .+|+|
T Consensus 220 l~v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~---~lp~T 296 (509)
T PLN02362 220 LDMRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSS---HLPRT 296 (509)
T ss_pred CCcEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCC---CCCCc
Confidence 9999999999999999999999999999999999999999999999999977 4567899999999999865 27899
Q ss_pred chhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHH
Q psy4666 312 EFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRN 391 (828)
Q Consensus 312 ~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~ 391 (828)
+||+.+|..|.|||+|+||||+||||||||+|++|++|++++.+|++ .|+.|.++|+|+|++|++|+.|+++++..+++
T Consensus 297 ~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~ 375 (509)
T PLN02362 297 SYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVAR 375 (509)
T ss_pred hHHHHHhcCCCCcCcchHHHHHhhccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999975 67889999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------------------CeEEEEEcCceeecc
Q psy4666 392 VLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDF------------------SIVTVGVDGSVYRYH 453 (828)
Q Consensus 392 il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~------------------~~ItVGvDGSVy~~~ 453 (828)
+|++.+|++.++.+|++.+++||.+|++|||+|+||+|+||+++++. ++++||||||||++|
T Consensus 376 ~l~~~~~~~~~~~~~~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~y 455 (509)
T PLN02362 376 ILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNY 455 (509)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcC
Confidence 99999999888999999999999999999999999999999999872 259999999999999
Q ss_pred hhHHHHHHHHHHhhcc-----cceee----ecccchhhhhccc
Q psy4666 454 PYFHHMMLEKIPALIS-----HSVIV----GTGFNACYVERTE 487 (828)
Q Consensus 454 p~f~~~L~e~lreL~p-----~~~i~----GtG~nAAyv~~~~ 487 (828)
|.|+++++++++++++ .+.+. |||.|||+++++.
T Consensus 456 p~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~ 498 (509)
T PLN02362 456 TMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASY 498 (509)
T ss_pred cCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHH
Confidence 9999999999999984 23332 9999999999874
No 5
>KOG1369|consensus
Probab=100.00 E-value=8.1e-99 Score=837.36 Aligned_cols=404 Identities=48% Similarity=0.855 Sum_probs=377.0
Q ss_pred CchHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc--eeEEEEEEEecCCCccc
Q psy4666 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE--KFRMEHKTYPISPEIMT 77 (828)
Q Consensus 1 ~~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~--~~~~~~~~~~Ip~e~~~ 77 (828)
+++|.+||++||++.++. ++++|+||||.++|+|+|+|+|||||||||||||++|. .|. .+.+.++.|+||+++|.
T Consensus 49 ~~~~~~em~~gL~~~~~g-~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~ 127 (474)
T KOG1369|consen 49 VDAFREEMERGLAKKTHG-SAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQ 127 (474)
T ss_pred HHHHHHHHHhhhhccCCC-cccccchhhcccCCCCCcCCCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHc
Confidence 368999999999976543 33999999999999999999999999999999999999 554 46778889999999999
Q ss_pred CCccchHHHHHHHHHHHHhhccCCCCc-cceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCeEEEe
Q psy4666 78 GPGEQLFDYIAESLENFVREQKAENEH-LPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVR 156 (828)
Q Consensus 78 g~~~~lFd~IA~~i~~fl~e~~~~~~~-l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~ 156 (828)
|++++|||||++|+++|+++++..+.. +|+||||||||+|+|+++ |+|
T Consensus 128 gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~lgFTFSfP~~Q~si~~-----------------------------g~L-- 176 (474)
T KOG1369|consen 128 GTGEELFDFIARCLADFLDKMGLKGASKLPLGFTFSFPCRQTSIDK-----------------------------GTL-- 176 (474)
T ss_pred CchHHHHHHHHHHHHHHHHHhccccccccccceEEeeeeeeccccc-----------------------------ceE--
Confidence 999999999999999999999886555 999999999999999999 999
Q ss_pred ccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCcc
Q psy4666 157 WTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236 (828)
Q Consensus 157 ~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~ 236 (828)
++|||||++++++|+||+++|++||.|||...++
T Consensus 177 ----------------------------------------------~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~ 210 (474)
T KOG1369|consen 177 ----------------------------------------------IRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMD 210 (474)
T ss_pred ----------------------------------------------EEecccccchhhhcchHHHHHHHHHHHcCCcceE
Confidence 9999999999999999999999999999944599
Q ss_pred EEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCCccCCCCcccccccchhh
Q psy4666 237 VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLTEFDR 315 (828)
Q Consensus 237 vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG~FG~~G~l~~~~T~fD~ 315 (828)
|+||+||||||+++++|.+++|.||+|+||||||||+|+.++|+++.+ .... +||||||||+||++ ++++|+|+||.
T Consensus 211 V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~~~~~~~~-~miIN~EWG~F~~~-~~~l~~T~yD~ 288 (474)
T KOG1369|consen 211 VVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKVEGDAGRG-PMCINTEWGAFGDN-SLDLPRTEYDV 288 (474)
T ss_pred EEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhcccccCCC-ceEEEccccCCCcc-ccccchhhHHH
Confidence 999999999999999999999999999999999999999999999998 2222 89999999999998 99999999999
Q ss_pred hhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHH
Q psy4666 316 TIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQ 395 (828)
Q Consensus 316 ~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~ 395 (828)
.+|.+|+|||+|.||||+|||||||++|++|+++.+++.||++.. +.+ +|+.|.|+++|+|++|+.+++..+.. +++
T Consensus 289 ~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~-~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~ 365 (474)
T KOG1369|consen 289 VVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS-TKL-TPFIFETKYVSAIEEDDTGALQETEK-ILD 365 (474)
T ss_pred HHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-ccc-CcceeccchHHhHhcCCchHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999987 666 99999999999999999999999888 779
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEEEEcCceeecchhHHHHHHHHHHhhc-ccc
Q psy4666 396 RLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMD---FSIVTVGVDGSVYRYHPYFHHMMLEKIPALI-SHS 471 (828)
Q Consensus 396 ~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~---~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~-p~~ 471 (828)
.||++..+.+|+..++++|..|++|||+|+||||+||+++++ ..+++||||||||++||.|+++|++++++++ |.+
T Consensus 366 ~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~ 445 (474)
T KOG1369|consen 366 LLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPSI 445 (474)
T ss_pred hhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999987 3579999999999999999999999999999 434
Q ss_pred ee--e----ecccchhhhhccc
Q psy4666 472 VI--V----GTGFNACYVERTE 487 (828)
Q Consensus 472 ~i--~----GtG~nAAyv~~~~ 487 (828)
.| . |||.|||+++++.
T Consensus 446 ~v~i~~s~dgSg~GAAL~Aav~ 467 (474)
T KOG1369|consen 446 HVKLVLSEDGSGRGAALIAAVA 467 (474)
T ss_pred eEEEEECCCCccccHHHHHHHH
Confidence 43 2 9999999999875
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=5.8e-97 Score=829.63 Aligned_cols=392 Identities=34% Similarity=0.604 Sum_probs=358.8
Q ss_pred CchHHHHHHhhcccC-CC------CCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc-eeEEEEEEEec
Q psy4666 1 MSRLNADIDKGLHKD-TH------ATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE-KFRMEHKTYPI 71 (828)
Q Consensus 1 ~~~f~~em~~GL~~~-~~------~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~-~~~~~~~~~~I 71 (828)
+++|.+||++||+++ +| ..|+++||||||+++|+|+|+|+|||||||||||||++|+ .|+ .+.+.+++|+|
T Consensus 29 ~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~i 108 (464)
T PTZ00107 29 VDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSL 108 (464)
T ss_pred HHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeC
Confidence 368999999999976 33 3799999999999999999999999999999999999999 554 56778899999
Q ss_pred CCCcccC---------CccchHHHHHHHHHHHHhhccC---CCCccceEEEEeccccccccchhhhhhhhcccccccccc
Q psy4666 72 SPEIMTG---------PGEQLFDYIAESLENFVREQKA---ENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYT 139 (828)
Q Consensus 72 p~e~~~g---------~~~~lFd~IA~~i~~fl~e~~~---~~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~ 139 (828)
|++++.| ++++||||||+||++|+++++. ..+.+||||||||||+|+++++
T Consensus 109 p~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~----------------- 171 (464)
T PTZ00107 109 PKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNN----------------- 171 (464)
T ss_pred CHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccccccccccceeEEeeeeecccCCc-----------------
Confidence 9999999 8999999999999999999872 2246999999999999999999
Q ss_pred ccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCccc-----CCC
Q psy4666 140 YTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKC-----EGV 214 (828)
Q Consensus 140 ~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~-----~~v 214 (828)
|+| ++|||||++ +|+
T Consensus 172 ------------g~L------------------------------------------------i~WtKGF~~~~~~~~~v 191 (464)
T PTZ00107 172 ------------AIL------------------------------------------------IDWTKGFETGRATNDPV 191 (464)
T ss_pred ------------eEE------------------------------------------------EEeccceeeccCCCCCc
Confidence 999 999999999 999
Q ss_pred cCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC----CCcEEEEEEcccccceeeccccccccCCCCCCCCc
Q psy4666 215 VGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH----KHCKIGVIVGTGFNACYVERTENVSTFENEANKPF 290 (828)
Q Consensus 215 ~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~----~~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~ 290 (828)
+|+||+++|++||+|++ ++|+|+||+||||||||+++|.+ ++|.||+|+|||+|+||+|+.... ...++
T Consensus 192 ~G~DV~~lL~~Al~r~~-l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~------~~~~~ 264 (464)
T PTZ00107 192 EGKDVGELLNDAFKRNN-VPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSA------YGYAG 264 (464)
T ss_pred cCchHHHHHHHHHHHcC-CCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeeehhhcc------CCCCc
Confidence 99999999999999997 99999999999999999999999 999999999999999999964321 12457
Q ss_pred EEEecCCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCcc
Q psy4666 291 VVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIF 370 (828)
Q Consensus 291 MiINtEwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sf 370 (828)
|+||||||+||++ +|+|+||+.+|+.|.|||+|+||||+||+|||||+|++|+++++++. |+.+.++++|
T Consensus 265 ~iINtEwG~F~~~----lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~~------~~~l~~~~~~ 334 (464)
T PTZ00107 265 TPINMECGNFDSK----LPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRLIVHLLQLKA------PPKMWQSGSF 334 (464)
T ss_pred EEEEeeccccCCC----CCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHHHHHHHHhcCC------chhhcCCccc
Confidence 9999999999743 68999999999999999999999999999999999999999988654 5778999999
Q ss_pred ChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CeEEEEEcCc
Q psy4666 371 DTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDF--SIVTVGVDGS 448 (828)
Q Consensus 371 dT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~--~~ItVGvDGS 448 (828)
+|+++++|+.|.++++..++++|.+.+++. ++.+|++.+++||.+|++|||+|+||+|+||+++++. ++++||||||
T Consensus 335 ~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGS 413 (464)
T PTZ00107 335 ESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGS 413 (464)
T ss_pred ccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCc
Confidence 999999999999999999999998889987 7889999999999999999999999999999999998 7799999999
Q ss_pred eeecchhHHHHHHHHHHhhc-cc---ceee----ecccchhhhhccc
Q psy4666 449 VYRYHPYFHHMMLEKIPALI-SH---SVIV----GTGFNACYVERTE 487 (828)
Q Consensus 449 Vy~~~p~f~~~L~e~lreL~-p~---~~i~----GtG~nAAyv~~~~ 487 (828)
||++||.|++++++++++++ |. +.+. |||.|||+++++.
T Consensus 414 v~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~DGSg~GAAl~AA~~ 460 (464)
T PTZ00107 414 VYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGKGAAIIAAMV 460 (464)
T ss_pred ceecCccHHHHHHHHHHHHhCCCCCcEEEEEccCchHHHHHHHHHHh
Confidence 99999999999999999997 33 3332 9999999998864
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-80 Score=675.37 Aligned_cols=404 Identities=35% Similarity=0.647 Sum_probs=373.0
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc-eeEEEEEEEecCCCcccC-
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE-KFRMEHKTYPISPEIMTG- 78 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~-~~~~~~~~~~Ip~e~~~g- 78 (828)
++|.+||++||+.. .+..++|+|+||...|+|+|.|.|||||+|||||||++|. .|. .+.|++.++.+|.+..+.
T Consensus 40 ~~Fieel~kgL~~~--~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sks~lp~e~~~~~ 117 (466)
T COG5026 40 KAFIEELEKGLQPK--SGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSFLPVECRDSE 117 (466)
T ss_pred HHHHHHHHhccCCC--CCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEEEeCCCCCcccccCcccCchhhccCC
Confidence 57999999999832 2344999999999999999999999999999999999999 543 678888888899999887
Q ss_pred CccchHHHHHHHHHHHHhhccCC--CCccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCeEEEe
Q psy4666 79 PGEQLFDYIAESLENFVREQKAE--NEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVR 156 (828)
Q Consensus 79 ~~~~lFd~IA~~i~~fl~e~~~~--~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~ 156 (828)
+.+++|++||++++.|++++..+ .+++++|||||||++|+++++ |.|
T Consensus 118 ~~~~l~~~iadrl~~fi~~~~~~~~~~~l~~gfTFSYP~~q~sin~-----------------------------g~l-- 166 (466)
T COG5026 118 SRDELFGFIADRLAAFIKEQHPSGYGSKLPIGFTFSYPLNQTSINE-----------------------------GQL-- 166 (466)
T ss_pred ChHHHHHHHHHHHHHHHHHhCchhccCcceeeEEEeccccccccCc-----------------------------eee--
Confidence 78999999999999999999874 357999999999999999999 999
Q ss_pred ccccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCcc
Q psy4666 157 WTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236 (828)
Q Consensus 157 ~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~ 236 (828)
++|||||++++++|+||+++|+++|.+|+ +|++
T Consensus 167 ----------------------------------------------~rwTKgf~i~e~ig~dvv~~l~e~l~~r~-~pi~ 199 (466)
T COG5026 167 ----------------------------------------------IRWTKGFDIPEVIGTDVVRLLQEALSARN-LPIR 199 (466)
T ss_pred ----------------------------------------------EeecccCcchhhhhhhHHHHHHHHHHhcC-CceE
Confidence 99999999999999999999999999998 8999
Q ss_pred EEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCC--CCCCCcEEEecCCCccCCCCcccccccchh
Q psy4666 237 VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFEN--EANKPFVVINTEWGAFGDDGALDFLLTEFD 314 (828)
Q Consensus 237 vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~g--age~G~MiINtEwG~FG~~G~l~~~~T~fD 314 (828)
|+||+|||+||+|+..|.++++.||+|+|||||+||+|+...|+++.. -.+.+.|+||+|||.|.+- ...+++|.||
T Consensus 200 v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfdn~-~~~Lp~t~yd 278 (466)
T COG5026 200 VVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFDNE-LSVLPRTKYD 278 (466)
T ss_pred EEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEecccccCcc-eeecccccee
Confidence 999999999999999999999999999999999999999999999874 3577889999999999643 4457899999
Q ss_pred hhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHH
Q psy4666 315 RTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLY 394 (828)
Q Consensus 315 ~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~ 394 (828)
-.+|+.|.+||.|.||||+||+||||++|++|..+..++.+|++..++++..++.++|..++.++.|+++.+.++...+.
T Consensus 279 v~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~ 358 (466)
T COG5026 279 VLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDPFENLRNTLTTFL 358 (466)
T ss_pred eeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhhcccceeeecchhhhhccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEEcCceeecchhHHHHHHHHHHhhcc--cc
Q psy4666 395 QRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMD-FSIVTVGVDGSVYRYHPYFHHMMLEKIPALIS--HS 471 (828)
Q Consensus 395 ~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~-~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p--~~ 471 (828)
+.|+++ .+.++++.++.+|++|.+|||+|+|+.+||++.+.+ .....||.||+||+.+|.|+++++++++.++. +.
T Consensus 359 ~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~ 437 (466)
T COG5026 359 NDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGE 437 (466)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCCccceeeeecchhhhchhHHHHHHHHHHHhhcccCc
Confidence 999998 788999999999999999999999999999999999 66688999999999999999999999998875 22
Q ss_pred ee--e----ecccchhhhhccc
Q psy4666 472 VI--V----GTGFNACYVERTE 487 (828)
Q Consensus 472 ~i--~----GtG~nAAyv~~~~ 487 (828)
.| . |+|.|||+++..+
T Consensus 438 ~i~i~~a~dgsglGAAl~a~~~ 459 (466)
T COG5026 438 KIKIKPAEDGSGLGAALCALLA 459 (466)
T ss_pred eeeEEecccCcchHHHHHHHHh
Confidence 22 2 9999999998765
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=1.4e-54 Score=451.80 Aligned_cols=227 Identities=42% Similarity=0.722 Sum_probs=206.5
Q ss_pred CcEEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccc
Q psy4666 257 HCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGM 336 (828)
Q Consensus 257 ~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~ 336 (828)
+|.||+|+|||+|+||+|+.++++++.+ ..++|+||||||+| ++|++++|+|+||+.+|+.|.|||+|+||||+||+
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~--~~~~~iINtEwg~f-~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG--KDGKMIINTEWGNF-DNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST--SSSEEEEEE-GGGT-TTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc--cCCeEEEEeecCCC-CCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999998 88999999999999 67899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy4666 337 YMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRV 416 (828)
Q Consensus 337 YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~a 416 (828)
|||||+|++|+++++++.||++..|+.|.++++|+|++++.|++|++.++..++.+|.+.++++ +|.+|+..++.||.+
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988999999999998889997 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC----C--CeEEEEEcCceeecchhHHHHHHHHHHhhccc--ceee------ecccchhh
Q psy4666 417 VSQRSAHLASAGIATLLNRMD----F--SIVTVGVDGSVYRYHPYFHHMMLEKIPALISH--SVIV------GTGFNACY 482 (828)
Q Consensus 417 V~~RAA~LlAAgLAAIl~~l~----~--~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p~--~~i~------GtG~nAAy 482 (828)
|++|||+|+|++|+||+.+++ . +.++||||||||++||.|++++++++++++|. +.|. |||.|||+
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi 236 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAI 236 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHH
Confidence 999999999999999999942 2 37999999999999999999999999999975 4443 99999999
Q ss_pred hhccc
Q psy4666 483 VERTE 487 (828)
Q Consensus 483 v~~~~ 487 (828)
++++.
T Consensus 237 ~AA~a 241 (243)
T PF03727_consen 237 AAAVA 241 (243)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=6.7e-48 Score=393.82 Aligned_cols=177 Identities=50% Similarity=0.912 Sum_probs=153.8
Q ss_pred chHHHHHHhhcccCCCCCCCccccccccccCCCCcccccEEEEEeCCceEEEEEEE-eCc-eeEEEEEEEecCCCcccCC
Q psy4666 2 SRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY-AGE-KFRMEHKTYPISPEIMTGP 79 (828)
Q Consensus 2 ~~f~~em~~GL~~~~~~~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~-~~~~~~~~~~Ip~e~~~g~ 79 (828)
++|++||++||+++++..++++||||||+++|+|+|+|.|||||+|||||||++|+ .|+ .+++.+++|+||.+++.++
T Consensus 26 ~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~ 105 (206)
T PF00349_consen 26 DRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGS 105 (206)
T ss_dssp HHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSB
T ss_pred HHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCC
Confidence 68999999999988766677999999999999999999999999999999999999 554 6788899999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccC--CCCccceEEEEeccccccccchhhhhhhhccccccccccccCCCcccccCCeEEEec
Q psy4666 80 GEQLFDYIAESLENFVREQKA--ENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRW 157 (828)
Q Consensus 80 ~~~lFd~IA~~i~~fl~e~~~--~~~~l~LGftFSFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~ 157 (828)
+++||||||+||++|+++++. .++.+|+||||||||+|+++++ |+|
T Consensus 106 ~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfTFSFP~~q~~~~~-----------------------------g~l--- 153 (206)
T PF00349_consen 106 GEELFDFIADCIAEFLKEHNLESRDEKLPLGFTFSFPVEQTSLNS-----------------------------GTL--- 153 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEEEESSEEESSTTE-----------------------------EEE---
T ss_pred cccHHHHHHHHHHHHHHHhcccccccccceEEEEEEEEEeccCCC-----------------------------eEE---
Confidence 999999999999999999987 5678999999999999999999 999
Q ss_pred cccceecccccchHHHHHHHHHHHhhcccccccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccE
Q psy4666 158 TKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNV 237 (828)
Q Consensus 158 ~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~v 237 (828)
++|||||.+++++|+|++++|++||+|++..+++|
T Consensus 154 ---------------------------------------------i~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v 188 (206)
T PF00349_consen 154 ---------------------------------------------IRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKV 188 (206)
T ss_dssp -------------------------------------------------TT---BTGTTSBHHHHHHHHHHHHTSSEEEE
T ss_pred ---------------------------------------------EEeeccccccCCCCCccchhHHHHHHHhcccCcce
Confidence 89999999999999999999999999998444999
Q ss_pred EEEEechHHHHHhcccCC
Q psy4666 238 VAILNDTAGCLVSCAYDH 255 (828)
Q Consensus 238 vAVvNDTVaTLLaeay~~ 255 (828)
+||+|||||||||++|.+
T Consensus 189 ~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 189 VAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp EEEE-HHHHHHHHHHTT-
T ss_pred EEEEECCHHHhhhhhcCC
Confidence 999999999999999974
No 10
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=9.4e-41 Score=348.22 Aligned_cols=166 Identities=36% Similarity=0.595 Sum_probs=138.1
Q ss_pred ceeeecccchhhhhcccccccccccCCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHH
Q psy4666 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGE 550 (828)
Q Consensus 471 ~~i~GtG~nAAyv~~~~~I~k~~~~~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGE 550 (828)
..|+|||+||||+++.++|+++++ +.++|+||||||+| +++++++|+|+||+.||+.|.|||+|+||||+|||||||
T Consensus 5 GlIlGTG~Na~Y~e~~~~i~~~~~--~~~~~iINtEwg~f-~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~YLGE 81 (243)
T PF03727_consen 5 GLILGTGTNACYMEKTSNIPKLKG--KDGKMIINTEWGNF-DNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGMYLGE 81 (243)
T ss_dssp EEEESSSEEEEEEEEGGG-TTSST--SSSEEEEEE-GGGT-TTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHHHHHH
T ss_pred EEEEeCCeeEEEeeecccCccccc--cCCeEEEEeecCCC-CCCCccCCCCcccHHHhhhhhccCceEEeeEeceecHHH
Confidence 367899999999999999999987 56789999999999 677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccccccCcccccccceecccC-CCCCchhHHHHHhhccccc-hh---HHHHHHHHHHHH
Q psy4666 551 IVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAAD-VVNDNSSQLIETQIRTLKS-SQ---FHLVQSKESNSA 625 (828)
Q Consensus 551 LvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~-~~~d~s~~ll~~~~~~i~~-t~---~k~v~~~Vs~RA 625 (828)
|+|++|++|++++.||++..|+.|.++++|+|+++|.|+.++ .+...+..++...+....+ .+ +++||.+|++||
T Consensus 82 l~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~~t~~d~~~lr~I~~aV~~RA 161 (243)
T PF03727_consen 82 LVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLPPTEEDRQILRRICEAVSTRA 161 (243)
T ss_dssp HHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999752 2234455555554543222 22 999999999999
Q ss_pred Hhhhhccccccccc
Q psy4666 626 ANKCNNEDESNEMK 639 (828)
Q Consensus 626 A~l~aa~~~~~~~~ 639 (828)
|+||||++.+-=.+
T Consensus 162 A~L~Aa~iaail~~ 175 (243)
T PF03727_consen 162 ARLVAAAIAAILNK 175 (243)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886544
No 11
>PLN02405 hexokinase
Probab=100.00 E-value=7e-38 Score=354.52 Aligned_cols=165 Identities=30% Similarity=0.426 Sum_probs=140.9
Q ss_pred eeeecccchhhhhccccccccccc-CCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHH
Q psy4666 472 VIVGTGFNACYVERTENVSTFENE-ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGE 550 (828)
Q Consensus 472 ~i~GtG~nAAyv~~~~~I~k~~~~-~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGE 550 (828)
.|+|||+||||+|++++|+||++. ...+.|+||||||+||.+ .+|+|+||+.||+.|.|||+|+||||||||||||
T Consensus 249 ~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~---~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGE 325 (497)
T PLN02405 249 VILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSS---HLPLTEYDHALDVESLNPGEQIFEKIISGMYLGE 325 (497)
T ss_pred EEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCC---CCCCchHHHHHhhcCCCCCcchhhHHHhhccHHH
Confidence 556999999999999999999653 235689999999999855 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccccccCcccccccceecccCC-CCCchhHHHHHhhccccc---hh--HHHHHHHHHHH
Q psy4666 551 IVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADV-VNDNSSQLIETQIRTLKS---SQ--FHLVQSKESNS 624 (828)
Q Consensus 551 LvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~-~~d~s~~ll~~~~~~i~~---t~--~k~v~~~Vs~R 624 (828)
|+|+||++|++++.||++..|+.|.++++|+|++||.|+.++. +.+.+.+++...+..... .+ +++||++|++|
T Consensus 326 ivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i~~~V~~R 405 (497)
T PLN02405 326 ILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCNIVATR 405 (497)
T ss_pred HHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997532 233444555555552211 11 89999999999
Q ss_pred HHhhhhccccccccc
Q psy4666 625 AANKCNNEDESNEMK 639 (828)
Q Consensus 625 AA~l~aa~~~~~~~~ 639 (828)
||.|+||++.|--.|
T Consensus 406 AArL~Aa~iaail~k 420 (497)
T PLN02405 406 GARLSAAGIYGILKK 420 (497)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987544
No 12
>KOG1369|consensus
Probab=100.00 E-value=1.1e-37 Score=348.40 Aligned_cols=167 Identities=41% Similarity=0.636 Sum_probs=141.0
Q ss_pred eeeecccchhhhhcccccccccccCCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHHH
Q psy4666 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEI 551 (828)
Q Consensus 472 ~i~GtG~nAAyv~~~~~I~k~~~~~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGEL 551 (828)
.|.|||+||||++.+++|+|++++.....||||||||+||++ .+++|+|+||..||+.|+|||+|.|||||||||||||
T Consensus 236 vI~GTGtNacY~e~~~~i~k~~~~~~~~~miIN~EWG~F~~~-~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEi 314 (474)
T KOG1369|consen 236 VIFGTGTNACYMEDMRNIEKVEGDAGRGPMCINTEWGAFGDN-SLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEI 314 (474)
T ss_pred EEECCCccceeeeeccchhhcccccCCCceEEEccccCCCcc-ccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHH
Confidence 445999999999999999999986555479999999999988 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCccccccCcccccccceecccCCCCCchhHHHHHhhccccc--h-h--HHHHHHHHHHHHH
Q psy4666 552 VRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVVNDNSSQLIETQIRTLKS--S-Q--FHLVQSKESNSAA 626 (828)
Q Consensus 552 vRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~~~d~s~~ll~~~~~~i~~--t-~--~k~v~~~Vs~RAA 626 (828)
||+||+++.+++.||+++. +.| +|+.|+|+|+|+|++|+...-+....+...++.-.. . + |.+||.+|++|||
T Consensus 315 vR~vLl~m~~~~~lf~~~~-~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA 392 (474)
T KOG1369|consen 315 VRLVLLDLLEEGLLFGGQS-TKL-TPFIFETKYVSAIEEDDTGALQETEKILDLLGLETTTTEDRKLVREVCDVVSRRAA 392 (474)
T ss_pred HHHHHHHHhHhhhhhcccc-ccc-CcceeccchHHhHhcCCchHHHHHHHHHHhhCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 667 999999999999998544332222324444442212 2 2 8999999999999
Q ss_pred hhhhccccccccccc
Q psy4666 627 NKCNNEDESNEMKDN 641 (828)
Q Consensus 627 ~l~aa~~~~~~~~~~ 641 (828)
.||||||.+---|-+
T Consensus 393 ~L~aagIaail~k~~ 407 (474)
T KOG1369|consen 393 RLAAAGIAAILNKTG 407 (474)
T ss_pred HHHHhHHHHHHHHhc
Confidence 999999987654433
No 13
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.2e-37 Score=351.76 Aligned_cols=167 Identities=28% Similarity=0.407 Sum_probs=141.8
Q ss_pred eeeecccchhhhhccccccccccc-CCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHH
Q psy4666 472 VIVGTGFNACYVERTENVSTFENE-ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGE 550 (828)
Q Consensus 472 ~i~GtG~nAAyv~~~~~I~k~~~~-~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGE 550 (828)
.|+|||+||||++++++|+|+++. .+.+.|+||||||+||.. .+|+|+||++||+.|.|||+|+||||||||||||
T Consensus 249 ~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~---~lp~T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGE 325 (490)
T PLN02596 249 VTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSC---HLPITEFDASLDAESSNPGSRIFEKLTSGMYLGE 325 (490)
T ss_pred EEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCC---CCCCChHHHHHhccCCCCCcchHHHHHhhhhHHH
Confidence 567999999999999999999753 234689999999999843 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccccccCcccccccceecccCC-CCCchhHHHHHhhccccc--hh---HHHHHHHHHHH
Q psy4666 551 IVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADV-VNDNSSQLIETQIRTLKS--SQ---FHLVQSKESNS 624 (828)
Q Consensus 551 LvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~-~~d~s~~ll~~~~~~i~~--t~---~k~v~~~Vs~R 624 (828)
|+|+||++|++++.||++..|+.|.++++|+|++||.|+.++. +.+.+.+++...+..... .+ +++||++|++|
T Consensus 326 lvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~~~V~~R 405 (490)
T PLN02596 326 IVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVCDIVAER 405 (490)
T ss_pred HHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997432 233344566665553111 12 99999999999
Q ss_pred HHhhhhccccccccccc
Q psy4666 625 AANKCNNEDESNEMKDN 641 (828)
Q Consensus 625 AA~l~aa~~~~~~~~~~ 641 (828)
||.|+||++.|-=.|-+
T Consensus 406 AArL~Aa~iaail~k~g 422 (490)
T PLN02596 406 GARLAGAGIVGIIKKLG 422 (490)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999765543
No 14
>PLN02362 hexokinase
Probab=100.00 E-value=3.2e-37 Score=350.05 Aligned_cols=164 Identities=28% Similarity=0.421 Sum_probs=140.2
Q ss_pred eeeecccchhhhhccccccccccc-CCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHH
Q psy4666 472 VIVGTGFNACYVERTENVSTFENE-ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGE 550 (828)
Q Consensus 472 ~i~GtG~nAAyv~~~~~I~k~~~~-~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGE 550 (828)
.|+|||+||||++++++|+|+++. ...+.|+||||||+||++. +|+|+||+.||+.|.|||+|+||||||||||||
T Consensus 249 ~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~---lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGE 325 (509)
T PLN02362 249 VIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSH---LPRTSYDIDLDAESPNPNDQGFEKMISGMYLGD 325 (509)
T ss_pred EEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCC---CCCchHHHHHhcCCCCcCcchHHHHHhhccHHH
Confidence 567999999999999999999753 2356899999999998653 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccccccCcccccccceecccCC-CCCchhHHHHHhhccccc---hh--HHHHHHHHHHH
Q psy4666 551 IVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADV-VNDNSSQLIETQIRTLKS---SQ--FHLVQSKESNS 624 (828)
Q Consensus 551 LvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~-~~d~s~~ll~~~~~~i~~---t~--~k~v~~~Vs~R 624 (828)
|+|+||++|++++.+|++ .|+.|.++|+|+|+|||.|+.++. +.+.+.+++...++.... .+ +++||++|++|
T Consensus 326 ivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~V~~R 404 (509)
T PLN02362 326 IVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICDVVTRR 404 (509)
T ss_pred HHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 688899999999999999997532 345566666666663311 12 89999999999
Q ss_pred HHhhhhccccccccc
Q psy4666 625 AANKCNNEDESNEMK 639 (828)
Q Consensus 625 AA~l~aa~~~~~~~~ 639 (828)
||.|+|||+.|-=.|
T Consensus 405 aArL~Aa~iaail~k 419 (509)
T PLN02362 405 AARLAAAGIVGILKK 419 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999986554
No 15
>PLN02914 hexokinase
Probab=100.00 E-value=3.5e-37 Score=348.12 Aligned_cols=165 Identities=35% Similarity=0.504 Sum_probs=140.0
Q ss_pred ceeeecccchhhhhccccccccccc-CCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchH
Q psy4666 471 SVIVGTGFNACYVERTENVSTFENE-ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMG 549 (828)
Q Consensus 471 ~~i~GtG~nAAyv~~~~~I~k~~~~-~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLG 549 (828)
..|+|||+||||+|++++|+||++. ...+.|+||||||+|| ++ +|+|+||+.||+.|.|||+|+|||||||||||
T Consensus 248 GlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~-~~---lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLG 323 (490)
T PLN02914 248 AVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFS-DG---LPLTEFDREMDAASINPGEQIFEKTISGMYLG 323 (490)
T ss_pred EEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccC-CC---CCCChHHHHHhhCCCCCCcchhhhHHhhhhHH
Confidence 3567999999999999999999753 2356899999999996 32 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCccccccCcccccccceecccCC-CCCchhHHHHHhhccccc-hh---HHHHHHHHHHH
Q psy4666 550 EIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADV-VNDNSSQLIETQIRTLKS-SQ---FHLVQSKESNS 624 (828)
Q Consensus 550 ELvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~-~~d~s~~ll~~~~~~i~~-t~---~k~v~~~Vs~R 624 (828)
||+|+||++|++++.||.+..|+.|.++++|+|++||.|+.+.. +...+.+++...+..... .+ +++||++|++|
T Consensus 324 EivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~~~~~d~~~vr~i~~~V~~R 403 (490)
T PLN02914 324 EIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGSILYDVLGVEASLSARRRVVEVCDTIVKR 403 (490)
T ss_pred HHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997532 233445556555553222 12 89999999999
Q ss_pred HHhhhhccccccccc
Q psy4666 625 AANKCNNEDESNEMK 639 (828)
Q Consensus 625 AA~l~aa~~~~~~~~ 639 (828)
||.|+||++.+--.|
T Consensus 404 AArL~Aa~iaail~k 418 (490)
T PLN02914 404 GGRLAGAGIVGILEK 418 (490)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999986544
No 16
>PTZ00107 hexokinase; Provisional
Probab=99.97 E-value=5e-33 Score=313.49 Aligned_cols=152 Identities=28% Similarity=0.339 Sum_probs=123.0
Q ss_pred eeeecccchhhhhcccccccccccCCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccchHHH
Q psy4666 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEI 551 (828)
Q Consensus 472 ~i~GtG~nAAyv~~~~~I~k~~~~~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYLGEL 551 (828)
.|+|||+||||+++.... ...+.|+||||||+||++ +|+|+||+.+|+.|.|||+|+|||||||||||||
T Consensus 242 lIlGTG~NacY~E~~~~~------~~~~~~iINtEwG~F~~~----lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi 311 (464)
T PTZ00107 242 VIIGTGSNACYFEPEVSA------YGYAGTPINMECGNFDSK----LPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEI 311 (464)
T ss_pred EEEeccccceeeehhhcc------CCCCcEEEEeeccccCCC----CCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHH
Confidence 567999999999964321 123469999999999743 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCccccccCcccccccceecccCC-CCCchhHHHHHhhccccc-hh---HHHHHHHHHHHHH
Q psy4666 552 VRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADV-VNDNSSQLIETQIRTLKS-SQ---FHLVQSKESNSAA 626 (828)
Q Consensus 552 vRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~-~~d~s~~ll~~~~~~i~~-t~---~k~v~~~Vs~RAA 626 (828)
+|+||++|++.+ .|+.|.++++|+|+++|.|+++.. +...+.+++...+..... .+ +++||.+|++|||
T Consensus 312 ~Rlvl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~d~~~lr~i~~~V~~RAA 385 (464)
T PTZ00107 312 SRRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVDLTDEDLYTIRKICELVRGRAA 385 (464)
T ss_pred HHHHHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998865 367899999999999999997432 234455555554442222 11 9999999999999
Q ss_pred hhhhccccccccc
Q psy4666 627 NKCNNEDESNEMK 639 (828)
Q Consensus 627 ~l~aa~~~~~~~~ 639 (828)
.|+||++.+--.|
T Consensus 386 ~L~Aa~iaail~k 398 (464)
T PTZ00107 386 QLAAAFIAAPAKK 398 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987544
No 17
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=261.59 Aligned_cols=170 Identities=29% Similarity=0.472 Sum_probs=143.4
Q ss_pred ceeeecccchhhhhccccccccccc--CCCCeEEEecCCCCCCCCCCccccccccchhhhhcCCCccchhhhhhhcccch
Q psy4666 471 SVIVGTGFNACYVERTENVSTFENE--ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYM 548 (828)
Q Consensus 471 ~~i~GtG~nAAyv~~~~~I~k~~~~--~~~~~MiINtEWG~FGd~g~L~~~~T~fD~~lD~~S~nPG~Q~fEKMiSGmYL 548 (828)
..|.|||+|+||+++.++|+|++.+ +..+.|+||+|||+|+ |....+|+|+||..+|+.|.+||.|.||||+|||||
T Consensus 224 G~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfd-n~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yL 302 (466)
T COG5026 224 GIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFD-NELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYL 302 (466)
T ss_pred EEEEecCccceEEeecccCCcCccccccccCCeEEEecccccC-cceeeccccceeeeeccCCCCcchHHHhhhhcceeH
Confidence 3556999999999999999999843 3456799999999996 434567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCccccccCcccccccceecccCCC-CCchhHHHHHhhccccc-h---hHHHHHHHHHH
Q psy4666 549 GEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVV-NDNSSQLIETQIRTLKS-S---QFHLVQSKESN 623 (828)
Q Consensus 549 GELvRlILldl~~~g~LF~g~~~~~L~~~~~f~T~~lS~Ie~~~~~-~d~s~~ll~~~~~~i~~-t---~~k~v~~~Vs~ 623 (828)
|||+|++|.++..+|++|.++.|+.+..++.++|.++|.|+.++.. -..+.......||.... + -+..+|.+|.+
T Consensus 303 Gellr~~L~~l~~qg~~~~~q~~~~~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~tt~eer~lI~~l~~~i~~ 382 (466)
T COG5026 303 GELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAPTTKEERKLIRRLVELIGR 382 (466)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhcccceeeecchhhhhccccccccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975322 13445555666775432 1 17899999999
Q ss_pred HHHhhhhccccccccccc
Q psy4666 624 SAANKCNNEDESNEMKDN 641 (828)
Q Consensus 624 RAA~l~aa~~~~~~~~~~ 641 (828)
|||.|.|..+-.--.|-+
T Consensus 383 RAArlaa~~iaAi~~ktG 400 (466)
T COG5026 383 RAARLAAVPIAAIVIKTG 400 (466)
T ss_pred hhHHHHhhhHHHhhhhcC
Confidence 999999988877666665
No 18
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.91 E-value=1e-22 Score=217.36 Aligned_cols=269 Identities=16% Similarity=0.235 Sum_probs=199.5
Q ss_pred EEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--cccc
Q psy4666 42 LALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VDMM 118 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~q~ 118 (828)
++||+|||++|+++++ .|+.+. ...++.+. +.+++++.|.+.+.+|+++.+....++ +|+.+|+| ++..
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~--~~~~~~~~-----~~~~~~~~l~~~i~~~~~~~~~~~~~i-~gIgva~pG~vd~~ 72 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILS--KWKVPTDT-----TPETIVDAIASAVDSFIQHIAKVGHEI-VAIGIGAPGPVNRQ 72 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEE--EEEeCCCC-----CHHHHHHHHHHHHHHHHHhcCCCccce-EEEEEeccccccCC
Confidence 5899999999999999 887522 33344331 357899999999999999876554443 78888887 5432
Q ss_pred ccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccccc
Q psy4666 119 SLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTIS 198 (828)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 198 (828)
+ |++ .
T Consensus 73 ---~-----------------------------g~~-------------------------------------------~ 77 (318)
T TIGR00744 73 ---R-----------------------------GTV-------------------------------------------Y 77 (318)
T ss_pred ---C-----------------------------CEE-------------------------------------------E
Confidence 2 444 2
Q ss_pred cceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----CCCcEEEEEEcccccceeec
Q psy4666 199 KCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIGVIVGTGFNACYVE 274 (828)
Q Consensus 199 ~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----~~~~~IGLILGTGtNacYiE 274 (828)
..++..|+ +.|+.+.|++.+ + +| |.+.||+++.++++.+. +.++.+.+++|||++++++.
T Consensus 78 ~~~~~~w~---------~~~l~~~l~~~~---~-~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~ 141 (318)
T TIGR00744 78 FAVNLDWK---------QEPLKEKVEARV---G-LP---VVVENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIII 141 (318)
T ss_pred ecCCCCCC---------CCCHHHHHHHHH---C-CC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEE
Confidence 33557783 256888888866 4 66 59999999999999765 56889999999999999999
Q ss_pred cccccccCCC-CCCCCcEEEecC---CCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHh
Q psy4666 275 RTENVSTFEN-EANKPFVVINTE---WGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFT 350 (828)
Q Consensus 275 ~~~~i~kl~g-age~G~MiINtE---wG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~ 350 (828)
+++.+.+.+| +++.|||.++.+ -|.||..| |+|.++|+..|-+.++.......
T Consensus 142 ~G~~~~G~~g~agEiGh~~v~~~g~~~C~cG~~g-----------------------clE~~~s~~al~~~~~~~~~~~~ 198 (318)
T TIGR00744 142 NGEIRHGHNGVGAEIGHIRMVPDGRLLCNCGKQG-----------------------CIETYASATGLVRYAKRANAKPE 198 (318)
T ss_pred CCEEeecCCCCCcccCceEeCCCCCcccCCCCcc-----------------------hHHHHhCHHHHHHHHHHHhcccc
Confidence 9999988888 899999999743 45688777 69999999998654443111000
Q ss_pred hcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 351 EEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIA 430 (828)
Q Consensus 351 ~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLA 430 (828)
. ++.+ ...... .. .....++ +.++.++..|..+++++|+++|.+|+
T Consensus 199 ~---------~~~~-----------~~~~~~--~~-~~~~~i~-----------~~~~~gD~~a~~i~~~~~~~L~~~i~ 244 (318)
T TIGR00744 199 R---------AEVL-----------LALGDG--DG-ISAKHVF-----------VAARQGDPVAVDSYREVARWAGAGLA 244 (318)
T ss_pred c---------cchh-----------hccccc--CC-CCHHHHH-----------HHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 000000 00 0234444 45567788999999999999999999
Q ss_pred HHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc
Q psy4666 431 TLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 431 AIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~ 468 (828)
++++.++|+.|++| |++.+..+.|.+.+++.+++..
T Consensus 245 ~~~~~~dP~~Ivlg--G~~~~~~~~~~~~i~~~~~~~~ 280 (318)
T TIGR00744 245 DLASLFNPSAIVLG--GGLSDAGDLLLDPIRKSYKRWL 280 (318)
T ss_pred HHHHHhCCCEEEEC--ChhhhCcHHHHHHHHHHHHHHh
Confidence 99999999999998 9999989999999999998754
No 19
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.8e-22 Score=215.55 Aligned_cols=266 Identities=19% Similarity=0.311 Sum_probs=206.2
Q ss_pred ccccEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEeccc
Q psy4666 37 ETGKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPV 115 (828)
Q Consensus 37 E~G~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFPv 115 (828)
+...+++||+|||++++++++ .|+. ...+.++.|+... .+++.+.|++.+++++..++ . ..-.+|+.++.|.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~--l~~~~~~~~~~~~---~~~~~~~i~~~i~~~~~~~~-~-~~~~iGIgi~~pg 76 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEI--LLRERIPTPTPDP---EEAILEAILALVAELLKQAQ-G-RVAIIGIGIPGPG 76 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcE--EEEEEEecCCCCc---hhHHHHHHHHHHHHHHHhcC-C-cCceEEEEeccce
Confidence 344688999999999999999 8875 2244555554322 25889999999999999875 2 2235888888886
Q ss_pred cccccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcc
Q psy4666 116 DMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSST 195 (828)
Q Consensus 116 ~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 195 (828)
.-. . |..
T Consensus 77 ~~~---~-----------------------------~~~----------------------------------------- 83 (314)
T COG1940 77 DVD---N-----------------------------GTV----------------------------------------- 83 (314)
T ss_pred ecc---C-----------------------------CcE-----------------------------------------
Confidence 544 1 221
Q ss_pred ccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC----CCcEEEEEEcccccce
Q psy4666 196 TISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH----KHCKIGVIVGTGFNAC 271 (828)
Q Consensus 196 ~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~----~~~~IGLILGTGtNac 271 (828)
+...+++.|..+ .|+.+.|++.+ + +| |.|.||+++.+++|+|.+ .++++.+++|||++++
T Consensus 84 -~~~~~~~~~~~~--------~~l~~~L~~~~---~-~P---v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~g 147 (314)
T COG1940 84 -IVPAPNLGWWNG--------VDLAEELEARL---G-LP---VFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGG 147 (314)
T ss_pred -EeecCCCCcccc--------ccHHHHHHHHH---C-CC---EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEE
Confidence 133455777655 56899999977 4 66 499999999999999874 5799999999999999
Q ss_pred eeccccccccCCC-CCCCCcEEEecCC-CccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHH
Q psy4666 272 YVERTENVSTFEN-EANKPFVVINTEW-GAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKF 349 (828)
Q Consensus 272 YiE~~~~i~kl~g-age~G~MiINtEw-G~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l 349 (828)
++.+++.+++.+| +++.|||.++... |.||..| |+|.++|+..|-+.. .
T Consensus 148 iv~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~G-----------------------clE~~as~~al~~~~---~--- 198 (314)
T COG1940 148 IIVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRG-----------------------CLETYASGRAILRRA---A--- 198 (314)
T ss_pred EEECCEEeecCCCccccccceEECCCCccCCCCCC-----------------------chHHhccHHHHHHHH---H---
Confidence 9999999999888 8999999999776 5899888 699999999995543 0
Q ss_pred hhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 350 TEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGI 429 (828)
Q Consensus 350 ~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgL 429 (828)
+. . +... ... ..++++ +.+...+..+..++++++.++|.+|
T Consensus 199 -~~-~------~~~~---~~~-----------------~~~~i~-----------~~a~~gd~~a~~~~~~~~~~la~~i 239 (314)
T COG1940 199 -EA-L------ESEA---GEL-----------------TAKDIF-----------ELAAAGDPLAKEVIERAADYLARGL 239 (314)
T ss_pred -hh-c------cccc---cCc-----------------CHHHHH-----------HHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 0000 001 344555 5667888999999999999999999
Q ss_pred HHHHhhcCCCeEEEEEcC-ceeecchhHHHHHHHHHHhhc
Q psy4666 430 ATLLNRMDFSIVTVGVDG-SVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 430 AAIl~~l~~~~ItVGvDG-SVy~~~p~f~~~L~e~lreL~ 468 (828)
+++++.++|+.|+|| | ++....+.+.+.+++.+....
T Consensus 240 anl~~~~~P~~Ivig--G~g~~~~~~~~~~~l~~~~~~~~ 277 (314)
T COG1940 240 ANLINLLDPEVIVIG--GGGVSALGDLLLPRLRKLLAKYL 277 (314)
T ss_pred HHHHHhcCCCeEEEE--CcccccchhHHHHHHHHHHHHhh
Confidence 999999999999998 8 899999999999998887664
No 20
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.90 E-value=4.9e-22 Score=211.55 Aligned_cols=251 Identities=17% Similarity=0.203 Sum_probs=187.2
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--ccc
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VDM 117 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~q 117 (828)
+++||+|||++|+++++ +|+.. ....++.|.. +.+++.+.|.+.+.++..+.+ ...|+.+|+| ++.
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~--~~~~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-----~~~~igia~pG~vd~ 70 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQ--WEERVPTPRD----SYDAFLDAVCELVAEADQRFG-----CKGSVGIGIPGMPET 70 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEE--EEEEecCCCc----CHHHHHHHHHHHHHHHHhhcC-----CcceEEEeCCCcccC
Confidence 68999999999999999 88752 2334555432 356788888888887765432 1235666665 543
Q ss_pred cccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcccc
Q psy4666 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTI 197 (828)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 197 (828)
. + |++
T Consensus 71 ~---~-----------------------------g~~------------------------------------------- 75 (303)
T PRK13310 71 E---D-----------------------------GTL------------------------------------------- 75 (303)
T ss_pred C---C-----------------------------CEE-------------------------------------------
Confidence 3 2 443
Q ss_pred ccceee-ccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----CCCcEEEEEEccccccee
Q psy4666 198 SKCVLV-RWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIGVIVGTGFNACY 272 (828)
Q Consensus 198 ~~~~n~-~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----~~~~~IGLILGTGtNacY 272 (828)
. .+++ .| ++ .|+.+.|++.+ + +| |.+.||+++.++++.|. +.++.+++.+|||+++|+
T Consensus 76 ~-~~~~~~w-~~--------~~l~~~l~~~~---~-~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~gi 138 (303)
T PRK13310 76 Y-AANVPAA-SG--------KPLRADLSARL---G-RD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGL 138 (303)
T ss_pred e-ccCcccc-cC--------CcHHHHHHHHH---C-CC---eEEeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEE
Confidence 1 1234 46 33 56888998876 4 66 58999999999999876 568999999999999999
Q ss_pred eccccccccCCC-CCCCCcEEEecC------------CCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHH
Q psy4666 273 VERTENVSTFEN-EANKPFVVINTE------------WGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMG 339 (828)
Q Consensus 273 iE~~~~i~kl~g-age~G~MiINtE------------wG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLG 339 (828)
+.+++.+.+.++ ++|.|||.|+.. -|.||..| |+|.++|+..|.
T Consensus 139 v~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~g-----------------------clE~~~S~~al~ 195 (303)
T PRK13310 139 VFNGKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKG-----------------------CIENYLSGRGFE 195 (303)
T ss_pred EECCEEeeCCCCccccccceeecccccccccccCCCccCCCCCcc-----------------------hHHHhhcHHHHH
Confidence 999999999888 899999999742 35677777 699999999886
Q ss_pred HHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q psy4666 340 EIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQ 419 (828)
Q Consensus 340 ELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~ 419 (828)
+.++... +. .+ ..++++ +.++..+..|..+++
T Consensus 196 ~~~~~~~-----------~~---------~~-----------------~~~~l~-----------~~~~~gd~~a~~~~~ 227 (303)
T PRK13310 196 WLYQHYY-----------GE---------PL-----------------QAPEII-----------ALYYQGDEQAVAHVE 227 (303)
T ss_pred HHHHHhc-----------cC---------CC-----------------CHHHHH-----------HHHHcCCHHHHHHHH
Confidence 5444210 00 01 122333 445567788999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc
Q psy4666 420 RSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 420 RAA~LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~ 468 (828)
++++++|.+|+++++.++|+.|+|| |++.+ .|.|.+.+++.+++..
T Consensus 228 ~~~~~la~~l~n~~~~ldP~~Ivlg--G~~~~-~~~~~~~l~~~~~~~~ 273 (303)
T PRK13310 228 RYLDLLAICLGNILTIVDPHLVVLG--GGLSN-FDAIYEQLPKRLPRHL 273 (303)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC--CcccC-hHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 99887 6888899999987653
No 21
>PRK09557 fructokinase; Reviewed
Probab=99.88 E-value=3.1e-21 Score=205.46 Aligned_cols=252 Identities=19% Similarity=0.224 Sum_probs=186.0
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--ccc
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VDM 117 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~q 117 (828)
+|++|+|||++|+++++ +|+.. ...+++.|. . +.+++.+.|++.+.++..+.+ ...|+.+|.| ++.
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i~--~~~~~~~~~--~--~~~~~~~~i~~~i~~~~~~~~-----~~~gIgi~~pG~vd~ 70 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEEL--FRKRLPTPR--D--DYQQTIEAIATLVDMAEQATG-----QRGTVGVGIPGSISP 70 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCEE--EEEEecCCC--C--CHHHHHHHHHHHHHHHHhhcC-----CceEEEecCcccCcC
Confidence 78999999999999999 88752 233444442 1 346788888888877765432 1256766776 443
Q ss_pred cccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcccc
Q psy4666 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTI 197 (828)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 197 (828)
. + |++
T Consensus 71 ~---~-----------------------------g~i------------------------------------------- 75 (301)
T PRK09557 71 Y---T-----------------------------GLV------------------------------------------- 75 (301)
T ss_pred C---C-----------------------------CeE-------------------------------------------
Confidence 2 2 444
Q ss_pred ccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----CCCcEEEEEEcccccceee
Q psy4666 198 SKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIGVIVGTGFNACYV 273 (828)
Q Consensus 198 ~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----~~~~~IGLILGTGtNacYi 273 (828)
..++ ..|-++ .|+.+.|++++ + +| |.+.||++++++++.+. +.++.+.+++|||+++|++
T Consensus 76 ~~~~-~~~~~~--------~~l~~~l~~~~---~-~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv 139 (301)
T PRK09557 76 KNAN-STWLNG--------QPLDKDLSARL---N-RE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVA 139 (301)
T ss_pred EecC-CccccC--------CCHHHHHHHHH---C-CC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEE
Confidence 1122 235233 56888998877 4 66 58999999999999775 4678999999999999999
Q ss_pred ccccccccCCC-CCCCCcEEEe-----------cCCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHH
Q psy4666 274 ERTENVSTFEN-EANKPFVVIN-----------TEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEI 341 (828)
Q Consensus 274 E~~~~i~kl~g-age~G~MiIN-----------tEwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGEL 341 (828)
.+++.+.+.++ ++|.|||.|+ ..-|.||..| |+|.++|+..|.+.
T Consensus 140 ~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~G-----------------------clE~~~S~~al~~~ 196 (301)
T PRK09557 140 INGRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQG-----------------------CIETFISGTGFATD 196 (301)
T ss_pred ECCEEEecCCCCCcccCceecccccccccccCCCCcCCCCCCC-----------------------EEeEEEcHHHHHHH
Confidence 99999998888 8999999994 3446688877 58999999988554
Q ss_pred HHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q psy4666 342 VRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRS 421 (828)
Q Consensus 342 vRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RA 421 (828)
++... + . .++ ...++ +.++..+..|..+++++
T Consensus 197 ~~~~~-----------~---~------~~~-----------------~~~l~-----------~~~~~gd~~a~~~l~~~ 228 (301)
T PRK09557 197 YRRLS-----------G---K------ALK-----------------GSEII-----------RLVEEGDPVAELAFRRY 228 (301)
T ss_pred HHHhc-----------c---C------CCC-----------------HHHHH-----------HHHHcCCHHHHHHHHHH
Confidence 43210 0 0 011 22333 34456678889999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc
Q psy4666 422 AHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 422 A~LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~ 468 (828)
++++|.+|+++++.++|+.|+|| |++... +.|.+.+++.+++..
T Consensus 229 ~~~La~~l~~l~~~ldP~~Ivlg--G~~~~~-~~~~~~l~~~~~~~~ 272 (301)
T PRK09557 229 EDRLAKSLAHVINILDPDVIVLG--GGMSNV-DRLYPTLPALLKQYV 272 (301)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEc--Ccccch-HHHHHHHHHHHHHHh
Confidence 99999999999999999999998 998875 778888888887754
No 22
>PRK09698 D-allose kinase; Provisional
Probab=99.87 E-value=1.2e-20 Score=200.50 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=183.8
Q ss_pred cccEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--
Q psy4666 38 TGKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP-- 114 (828)
Q Consensus 38 ~G~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP-- 114 (828)
.+.++++|+|||++|+++++ +|+.. ....++.|.. . +.+ .++.+++.|.+++.+.+ .. .+|+++|+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i~--~~~~~~~~~~--~-~~~-~~~~l~~~i~~~~~~~~---~~-i~gigia~pG~ 72 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEIL--HCEKKRTAEV--I-APD-LVSGLGEMIDEYLRRFN---AR-CHGIVMGFPAL 72 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCEE--EEEEeCCccc--c-chH-HHHHHHHHHHHHHHHcC---CC-eeEEEEeCCcc
Confidence 34688999999999999999 88752 2344555532 1 233 49999999999998764 22 367777776
Q ss_pred ccccccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCc
Q psy4666 115 VDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSS 194 (828)
Q Consensus 115 v~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (828)
++.. + |++
T Consensus 73 vd~~---~-----------------------------g~i---------------------------------------- 80 (302)
T PRK09698 73 VSKD---R-----------------------------RTV---------------------------------------- 80 (302)
T ss_pred eeCC---C-----------------------------CEE----------------------------------------
Confidence 4432 2 443
Q ss_pred cccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC---CCCcEEEEEEcccccce
Q psy4666 195 TTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD---HKHCKIGVIVGTGFNAC 271 (828)
Q Consensus 195 ~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~---~~~~~IGLILGTGtNac 271 (828)
...+++.| ++ ..+.|+.+.|++++ + +| |.+.||++++++++.+. +.++.+++.+|||++++
T Consensus 81 ---~~~~~~~~-~~-----~~~~~l~~~l~~~~---~-~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~g 144 (302)
T PRK09698 81 ---ISTPNLPL-TA-----LDLYDLADKLENTL---N-CP---VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGFA 144 (302)
T ss_pred ---EecCCCCc-cc-----cccCCHHHHHHHHh---C-CC---EEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEEE
Confidence 22344553 11 23567999998877 4 66 59999999999998654 45689999999999999
Q ss_pred eeccccccccCCC-CCCCCcEEEe--cCCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHH
Q psy4666 272 YVERTENVSTFEN-EANKPFVVIN--TEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEK 348 (828)
Q Consensus 272 YiE~~~~i~kl~g-age~G~MiIN--tEwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~ 348 (828)
++.+++.+.+.++ ++|.|||.++ .+.|.||+.| |+|.++|+..|-+..+..
T Consensus 145 iv~~G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~g-----------------------clE~~~S~~al~~~~~~~--- 198 (302)
T PRK09698 145 VWMNGAPWTGAHGVAGELGHIPLGDMTQHCGCGNPG-----------------------CLETNCSGMALRRWYEQQ--- 198 (302)
T ss_pred EEECCEEeeCCCCCccccCceEeeCCCcccCCCCcc-----------------------chHhhcCHHHHHHHHHHh---
Confidence 9999999988888 8999999987 4566788888 699999998875433210
Q ss_pred HhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 349 FTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAG 428 (828)
Q Consensus 349 l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAg 428 (828)
+. ..+ ..+++ +..+ | ..+++++++.+|.+
T Consensus 199 -------~~-----------~~~-----------------~~~l~-~~~~-------~--------~~~~~~~~~~la~~ 227 (302)
T PRK09698 199 -------PR-----------DYP-----------------LSDLF-VHAG-------D--------HPFIQSLLENLARA 227 (302)
T ss_pred -------cC-----------CCC-----------------HHHHH-HHcC-------C--------HHHHHHHHHHHHHH
Confidence 00 001 11122 1110 0 02557788899999
Q ss_pred HHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc
Q psy4666 429 IATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468 (828)
Q Consensus 429 LAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~ 468 (828)
|+++++.++|+.|+|| |++.+..+.|.+.+++.+++..
T Consensus 228 l~~li~~ldP~~Ivlg--G~~~~~~~~~~~~l~~~~~~~~ 265 (302)
T PRK09698 228 IATSINLFDPDAIILG--GGVMDMPAFPRETLIAMIQKYL 265 (302)
T ss_pred HHHHHHHhCCCEEEEc--CccccCchhHHHHHHHHHHHHc
Confidence 9999999999999998 9999888888899999888764
No 23
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.86 E-value=4.8e-20 Score=195.27 Aligned_cols=248 Identities=17% Similarity=0.177 Sum_probs=181.7
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--ccc
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VDM 117 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~q 117 (828)
++++|+|||++|+++++ +|+.. ....++.|.. .+.+++.+.|.+.+.++..+ ..|+.+|.| ++.
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~--~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~--------~~~igi~~pG~vd~ 69 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIR--QRRQIPTPAS---QTPEALRQALSALVSPLQAQ--------ADRVAVASTGIIND 69 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEE--EEEEecCCCC---CCHHHHHHHHHHHHHHhhhc--------CcEEEEeCcccccC
Confidence 79999999999999999 88752 2344555532 23566888888888877531 135555555 531
Q ss_pred cccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcccc
Q psy4666 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTI 197 (828)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 197 (828)
+... .
T Consensus 70 ----------------------------------~~~~-----------------------------------------~ 74 (291)
T PRK05082 70 ----------------------------------GILT-----------------------------------------A 74 (291)
T ss_pred ----------------------------------CeeE-----------------------------------------E
Confidence 1110 0
Q ss_pred ccceee-ccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC---CCCcEEEEEEcccccceee
Q psy4666 198 SKCVLV-RWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD---HKHCKIGVIVGTGFNACYV 273 (828)
Q Consensus 198 ~~~~n~-~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~---~~~~~IGLILGTGtNacYi 273 (828)
..++++ .| + +.|+.+.|++.+ + +| |.+.||+++.++++.+. +.++++.+.+|||++++++
T Consensus 75 ~~~~~~~~w-~--------~~~l~~~l~~~~---~-~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~giv 138 (291)
T PRK05082 75 LNPHNLGGL-L--------HFPLVQTLEQLT---D-LP---TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGIV 138 (291)
T ss_pred ecCCCCccc-c--------CCChHHHHHHHh---C-CC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEEE
Confidence 111223 57 3 467888888866 4 66 59999999999999764 5678999999999999999
Q ss_pred ccccccccCCC-CCCCCcEEEec--CCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHh
Q psy4666 274 ERTENVSTFEN-EANKPFVVINT--EWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFT 350 (828)
Q Consensus 274 E~~~~i~kl~g-age~G~MiINt--EwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~ 350 (828)
.+++.+.+.++ ++|.|||.++. +.|.||..| |+|.++|+.+|-+..+. .
T Consensus 139 ~~G~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~G-----------------------clE~~~S~~al~~~~~~----~- 190 (291)
T PRK05082 139 LNGKLLTGPGGLAGHIGHTLADPHGPVCGCGRRG-----------------------CVEAIASGRAIAAAAQG----W- 190 (291)
T ss_pred ECCEEeeCCCCccccccceEecCCCCCCCCCCcC-----------------------chhhhcCHHHHHHHHHH----h-
Confidence 99998888888 89999999964 556788887 69999999988432211 0
Q ss_pred hcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 351 EEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIA 430 (828)
Q Consensus 351 ~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLA 430 (828)
+ + ..+ ...++ +.+...+..|..+++++++++|.+|+
T Consensus 191 -----~-----~------~~~-----------------~~~i~-----------~~~~~gd~~a~~~~~~~~~~la~~l~ 226 (291)
T PRK05082 191 -----L-----A------GCD-----------------AKTIF-----------ERAGQGDEQAQALINRSAQAIARLIA 226 (291)
T ss_pred -----h-----c------CCC-----------------HHHHH-----------HHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011 12233 33455677888999999999999999
Q ss_pred HHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhh
Q psy4666 431 TLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPAL 467 (828)
Q Consensus 431 AIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL 467 (828)
++++.++|+.|+|| |++.. .+.|.+.+++.++++
T Consensus 227 ~l~~~~dpe~Ivlg--G~~~~-~~~~~~~i~~~l~~~ 260 (291)
T PRK05082 227 DLKATLDCQCVVLG--GSVGL-AEGYLELVQAYLAQE 260 (291)
T ss_pred HHHHHhCCCEEEEc--Ccccc-HHHHHHHHHHHHHhc
Confidence 99999999999998 88765 577888899999875
No 24
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.83 E-value=3.7e-19 Score=186.09 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=166.7
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--cc
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VD 116 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~ 116 (828)
.|+++|+|||++|+++++ .|+.. ..++++.|.. +.+++++.+.+.++++..... ...|+++|+| ++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~--~~~~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-----~~~gIgv~~pG~vd 69 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRI--WHKRVPTPRE----DYPQLLQILRDLTEEADTYCG-----VQGSVGIGIPGLPN 69 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEE--EEEEecCCCc----CHHHHHHHHHHHHHHHHhhcC-----CCceEEEEecCcEE
Confidence 379999999999999999 88753 2344555532 345788888888877643322 2247777777 43
Q ss_pred ccccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccc
Q psy4666 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTT 196 (828)
Q Consensus 117 q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 196 (828)
.. . |++
T Consensus 70 ~~---~-----------------------------g~i------------------------------------------ 75 (256)
T PRK13311 70 AD---D-----------------------------GTV------------------------------------------ 75 (256)
T ss_pred CC---C-----------------------------CEE------------------------------------------
Confidence 22 1 333
Q ss_pred cccceee-ccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----CCCcEEEEEEcccccce
Q psy4666 197 ISKCVLV-RWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIGVIVGTGFNAC 271 (828)
Q Consensus 197 i~~~~n~-~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----~~~~~IGLILGTGtNac 271 (828)
.. +++ .| ++ .|+++.|++.+ + +| |.+.||+++.++++.|. +.++.+++++|||++++
T Consensus 76 -~~-~~~~~w-~~--------~~l~~~l~~~~---~-~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~g 137 (256)
T PRK13311 76 -FT-ANVPSA-MG--------QPLQADLSRLI---Q-RE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGG 137 (256)
T ss_pred -Ec-cCCCcc-cC--------CChHHHHHHHH---C-CC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEEE
Confidence 11 123 46 23 57999999877 4 66 59999999999999886 45899999999999999
Q ss_pred eeccccccccCCC-CCCCCcEEE--ec----------CCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccH
Q psy4666 272 YVERTENVSTFEN-EANKPFVVI--NT----------EWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYM 338 (828)
Q Consensus 272 YiE~~~~i~kl~g-age~G~MiI--Nt----------EwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YL 338 (828)
++.+++.+++.++ ++|.|||.+ +. ..|.||..| |+|.++||..|
T Consensus 138 iv~~G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~G-----------------------clE~~~S~~ai 194 (256)
T PRK13311 138 LIVNGSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRG-----------------------CIENYISGRGF 194 (256)
T ss_pred EEECCEEecCCCCCCccceeEEeccCcccccccCCCCCcCCCCCcc-----------------------chhheecHHHH
Confidence 9999999888888 899999998 32 245677776 69999999988
Q ss_pred HHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q psy4666 339 GEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVS 418 (828)
Q Consensus 339 GELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~ 418 (828)
.+..+... . . .. ..++++ +.+...++.|..++
T Consensus 195 ~~~~~~~~----~----------~------~~-----------------~~~~l~-----------~~~~~gd~~a~~~~ 226 (256)
T PRK13311 195 EWMYSHFY----Q----------H------TL-----------------PATDII-----------AHYAAGEPKAVAHV 226 (256)
T ss_pred HHHHHHhc----c----------C------CC-----------------CHHHHH-----------HHHHcCCHHHHHHH
Confidence 55433210 0 0 01 123444 45567789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEE
Q psy4666 419 QRSAHLASAGIATLLNRMDFSIVTV 443 (828)
Q Consensus 419 ~RAA~LlAAgLAAIl~~l~~~~ItV 443 (828)
+++++++|.+|+++++.+++..+..
T Consensus 227 ~~~~~~la~~i~nl~~~~~~~~~~~ 251 (256)
T PRK13311 227 ERFMDVLAVCLGNLLTMLGSPFGRG 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999999999999775443
No 25
>PRK12408 glucokinase; Provisional
Probab=99.82 E-value=3.1e-19 Score=194.55 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC-------------CC-CcEEEEEEcccccceeeccccccccCCC-
Q psy4666 220 VELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD-------------HK-HCKIGVIVGTGFNACYVERTENVSTFEN- 284 (828)
Q Consensus 220 v~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~-------------~~-~~~IGLILGTGtNacYiE~~~~i~kl~g- 284 (828)
.+.|++.+ + + ..|.++||+++.++++.+. +. .+.+.+++|||+|+|++.+++ .+.++
T Consensus 101 ~~~l~~~~---~-~--~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~ 172 (336)
T PRK12408 101 PEQIRAQL---G-L--QAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVL 172 (336)
T ss_pred HHHHHHHc---C-C--CeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--Cceeee
Confidence 36666654 3 3 3479999999999999877 23 578999999999999999987 45555
Q ss_pred CCCCCcEEEecCC--------CccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCccc
Q psy4666 285 EANKPFVVINTEW--------GAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILF 356 (828)
Q Consensus 285 age~G~MiINtEw--------G~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF 356 (828)
++|.|||.+.... +.|+.. |.-|+|.++||+.|.++.+..... .+.
T Consensus 173 agE~GH~~~~~~~~~~~~l~~~~~~~~---------------------~~~~~E~~~Sg~gL~~~~~~~~~~---~~~-- 226 (336)
T PRK12408 173 PTEAGQAALAAASELEMQLLQHLLRTR---------------------THVPIEHVLSGPGLLNLYRALCAL---RGA-- 226 (336)
T ss_pred cCccccccCCCCCHHHHHHHHHHHhhC---------------------CceeHhheecHHHHHHHHHHHHhh---cCC--
Confidence 8899999885321 112211 223799999999998887764210 000
Q ss_pred CCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4666 357 NGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDV-RYLCRVVSQRSAHLASAGIATLLNR 435 (828)
Q Consensus 357 ~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~v-r~Ic~aV~~RAA~LlAAgLAAIl~~ 435 (828)
....++ .+.++ +.+... +..|..++++.++++|.++++++..
T Consensus 227 ---------~~~~~~-----------------~~~v~-----------~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ 269 (336)
T PRK12408 227 ---------TPVHAS-----------------PAAIT-----------AAALAGDDALAHEALQVFCGFLGSVVGDMALA 269 (336)
T ss_pred ---------CcccCC-----------------HHHHH-----------HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112 23444 334454 7899999999999999999999999
Q ss_pred cCCCe-EEEEEcCceeec-chhHHHH--HHHHHHhh
Q psy4666 436 MDFSI-VTVGVDGSVYRY-HPYFHHM--MLEKIPAL 467 (828)
Q Consensus 436 l~~~~-ItVGvDGSVy~~-~p~f~~~--L~e~lreL 467 (828)
++|+. |+|| ||+... .+.|.+. +++.+++.
T Consensus 270 ldPe~GIvIG--GGIs~~~~~~l~~~~f~~~~~~~~ 303 (336)
T PRK12408 270 YGARGGVYLA--GGILPQIADFLARSDFVERFLNKG 303 (336)
T ss_pred HCCCceEEEE--CchhHhHHhhhcCHHHHHHHhccC
Confidence 99999 9999 999866 5666554 66666553
No 26
>PRK00292 glk glucokinase; Provisional
Probab=99.77 E-value=9.5e-18 Score=180.35 Aligned_cols=173 Identities=12% Similarity=0.117 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----------C----CCcEEEEEEcccccceeeccccccccCCC-C
Q psy4666 221 ELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----------H----KHCKIGVIVGTGFNACYVERTENVSTFEN-E 285 (828)
Q Consensus 221 ~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----------~----~~~~IGLILGTGtNacYiE~~~~i~kl~g-a 285 (828)
+.|++.+ + +| .|.+.||+++.++++.+. . .++.+.+++|||+++|++.++ +.+..+ +
T Consensus 84 ~~l~~~~---~-~p--~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~a 155 (316)
T PRK00292 84 AAMKQEL---G-LD--HLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLP 155 (316)
T ss_pred HHHHHHh---C-CC--eEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEec--CCceEEcc
Confidence 5666655 3 43 369999999999999752 1 367999999999999999987 556555 8
Q ss_pred CCCCcEEEecCCCc--------cCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccC
Q psy4666 286 ANKPFVVINTEWGA--------FGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFN 357 (828)
Q Consensus 286 ge~G~MiINtEwG~--------FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~ 357 (828)
+|.|||.++...-. |+. -|..|+|.++||..|.++.+.... ..+.
T Consensus 156 gE~GH~~~~~~~~~~~~~~~~~c~~---------------------~~~gclE~~~Sg~~L~~~~~~~~~---~~~~--- 208 (316)
T PRK00292 156 GEGGHVDFAPRSEEEAQILQYLRAE---------------------FGHVSAERVLSGPGLVNLYRAICK---ADGR--- 208 (316)
T ss_pred CCcccccCCCCChHHHHHHHHHHHh---------------------cCCceeEeeecHHhHHHHHHHHHh---hcCC---
Confidence 99999998632100 111 012379999999999776654321 0000
Q ss_pred CCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4666 358 GKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVR-YLCRVVSQRSAHLASAGIATLLNRM 436 (828)
Q Consensus 358 g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr-~Ic~aV~~RAA~LlAAgLAAIl~~l 436 (828)
.+ ..+ ..+.++ +.++..+ .+|..+++++++++|.+|+++++.+
T Consensus 209 ---~~-----~~~-----------------~~~~i~-----------~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~ 252 (316)
T PRK00292 209 ---EP-----ELL-----------------TPADIT-----------ERALAGSCPLCRRTLSLFCVILGRVAGNLALTL 252 (316)
T ss_pred ---Cc-----ccC-----------------CHHHHH-----------HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 001 234444 5566777 9999999999999999999999999
Q ss_pred CCC-eEEEEEcCceee-cchhHHH-HHHHHHHh
Q psy4666 437 DFS-IVTVGVDGSVYR-YHPYFHH-MMLEKIPA 466 (828)
Q Consensus 437 ~~~-~ItVGvDGSVy~-~~p~f~~-~L~e~lre 466 (828)
+|+ .|+|+ ||+.. ..+.+.+ .+++.+++
T Consensus 253 ~P~~~vvi~--Gg~~~~~~~~~~~~~~~~~~~~ 283 (316)
T PRK00292 253 GARGGVYIA--GGIVPRFLEFFKASGFRAAFED 283 (316)
T ss_pred cCCceEEEe--CchHHhHHhhhccHHHHHHHhc
Confidence 999 88888 88874 5566655 45665554
No 27
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.70 E-value=1.8e-16 Score=171.08 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=108.6
Q ss_pred EEEEEechHHHHHhc--------ccC----CCCcEEEEEEccccccee--ec---cccccccCCCCCCCCcEEEecCCCc
Q psy4666 237 VVAILNDTAGCLVSC--------AYD----HKHCKIGVIVGTGFNACY--VE---RTENVSTFENEANKPFVVINTEWGA 299 (828)
Q Consensus 237 vvAVvNDTVaTLLae--------ay~----~~~~~IGLILGTGtNacY--iE---~~~~i~kl~gage~G~MiINtEwG~ 299 (828)
.|.+.||.++.++++ .+. +.++.+.+++||||+.+. +. +++.+ . .++|.|||.+... +
T Consensus 93 ~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~~~vi~~~~g~l~-~--~agE~GH~~~~~~-~- 167 (316)
T TIGR00749 93 HLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGVAHLIHQVDGRWV-V--LPGEGGHVDFAPN-S- 167 (316)
T ss_pred eEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCceeeEEEEcCCCCEE-E--CCCCcccccCCCC-C-
Confidence 479999999999998 555 356789999977777764 55 66654 1 2679999988421 0
Q ss_pred cCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhh
Q psy4666 300 FGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIE 379 (828)
Q Consensus 300 FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie 379 (828)
..+ .++...+.... +.-|+|.++||+.|.++.|...... +.. .. ... ....+
T Consensus 168 --~~~------~~~~~~l~~~~---~~g~~E~~~Sg~gl~~~~~~~~~~~---~~~---~~-~~~-~~~~~--------- 219 (316)
T TIGR00749 168 --ELE------AIILEYLRAKI---GHVSAERVLSGPGLVNIYEALVKAD---PER---QF-NKL-PQENL--------- 219 (316)
T ss_pred --HHH------HHHHHHHHHhc---CCceeeeeecHHHHHHHHHHHHhhc---Ccc---cc-ccc-ccccC---------
Confidence 000 00000011111 2348999999999998888653211 110 00 000 00111
Q ss_pred hcCCCChHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCC-eEEEEEcCcee-ecchhH
Q psy4666 380 AADVGDISICRNVLYQRLALPHATAQDCIDVR-YLCRVVSQRSAHLASAGIATLLNRMDFS-IVTVGVDGSVY-RYHPYF 456 (828)
Q Consensus 380 ~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr-~Ic~aV~~RAA~LlAAgLAAIl~~l~~~-~ItVGvDGSVy-~~~p~f 456 (828)
.++.|+ +.++.++ .+|..++++.++++|.+++++++.++|+ -+.|+ ||+. +..+.+
T Consensus 220 --------~~~~I~-----------~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ldpeggv~v~--GG~~~~~~~~~ 278 (316)
T TIGR00749 220 --------KPKDIS-----------ERALAGSCTDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIA--GGIVPRFIEFF 278 (316)
T ss_pred --------CHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE--CcHHHhHHhhh
Confidence 235555 5667776 8999999999999999999999999998 55555 6665 444444
Q ss_pred HH-HHHHHH
Q psy4666 457 HH-MMLEKI 464 (828)
Q Consensus 457 ~~-~L~e~l 464 (828)
.+ .+.+.+
T Consensus 279 ~~~~f~~~~ 287 (316)
T TIGR00749 279 KASGFRAAF 287 (316)
T ss_pred CchHHHHHH
Confidence 33 333333
No 28
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.65 E-value=1e-15 Score=179.79 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=112.4
Q ss_pred HHHHHHHHhcCCCCccEEEEEechHHHHHhc--------ccC----CCCcEEEEEEcccccce---ee-ccccccccCCC
Q psy4666 221 ELLQQALVRRSNFPVNVVAILNDTAGCLVSC--------AYD----HKHCKIGVIVGTGFNAC---YV-ERTENVSTFEN 284 (828)
Q Consensus 221 ~LLqeAL~rrg~l~V~vvAVvNDTVaTLLae--------ay~----~~~~~IGLILGTGtNac---Yi-E~~~~i~kl~g 284 (828)
+.|++.+ .+.+|.++||.+++++++ .+. +.++.+.+++|||||.+ ++ .+++.+. .
T Consensus 99 ~~l~~~~------g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGlG~a~lv~~~g~~~~--~- 169 (638)
T PRK14101 99 EATRRAL------GFDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGLGVSGLIPADDRWIA--L- 169 (638)
T ss_pred HHHHHHc------CCCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccceeeEEEecCCeeEE--C-
Confidence 5666644 333589999999999995 333 34578899997776655 43 5554221 1
Q ss_pred CCCCCcEEEecC----C----CccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCccc
Q psy4666 285 EANKPFVVINTE----W----GAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILF 356 (828)
Q Consensus 285 age~G~MiINtE----w----G~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF 356 (828)
++|.|||.+... . +.||. .|..|+|.++||+.|.++.|...... +.
T Consensus 170 g~E~GH~~~~~~~~~e~~~~~~~~~~---------------------~g~~~~E~~~Sg~gL~~~~~~~~~~~---~~-- 223 (638)
T PRK14101 170 GSEGGHASFAPQDEREDLVLQYARKK---------------------YPHVSFERVCAGPGMEIIYRALAARD---KK-- 223 (638)
T ss_pred CCCccccCCCCCCHHHHHHHHHHHHh---------------------cCcceeeeecchhhHHHHHHHHHhhc---CC--
Confidence 357788877421 0 01121 23447999999999998887643211 10
Q ss_pred CCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4666 357 NGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM 436 (828)
Q Consensus 357 ~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l 436 (828)
+ .+..+ ..+.|+ +.+..++.+|..++++.++++|.++++++..+
T Consensus 224 ----~----~~~~~-----------------~~~~i~-----------~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~ 267 (638)
T PRK14101 224 ----R----VAANV-----------------DTAEIV-----------ERAHAGDALALEAVECFCAILGTFAGNLALTL 267 (638)
T ss_pred ----C----CcCcC-----------------CHHHHH-----------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00011 234455 55567789999999999999999999999999
Q ss_pred C-CCeEEEEEcCceeecc-hhHHH-HHHHHHHh
Q psy4666 437 D-FSIVTVGVDGSVYRYH-PYFHH-MMLEKIPA 466 (828)
Q Consensus 437 ~-~~~ItVGvDGSVy~~~-p~f~~-~L~e~lre 466 (828)
+ |+.|+|| ||+.... +.|.+ .+.+.++.
T Consensus 268 ~~p~~vvig--GGIs~~~~~~l~~~~f~~~f~~ 298 (638)
T PRK14101 268 GALGGIYIG--GGVVPKLGELFTRSSFRARFEA 298 (638)
T ss_pred CCCCcEEEe--CcHHHHHHHHcChHHHHHHHHh
Confidence 8 7999999 9998553 44432 44444443
No 29
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.65 E-value=6.9e-16 Score=151.59 Aligned_cols=169 Identities=22% Similarity=0.340 Sum_probs=133.0
Q ss_pred EEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc--ccccc
Q psy4666 43 ALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP--VDMMS 119 (828)
Q Consensus 43 alDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP--v~q~~ 119 (828)
+||+|+|++++++++ .|+. +...++++| .+.+++++.+.+.+.+++.+.+.. |+++|+| ++..+
T Consensus 1 gidig~~~i~~~l~d~~g~i--i~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~------gIgi~~pG~v~~~~ 67 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEI--IYSESIPTP-----TSPEELLDALAELIERLLADYGRS------GIGISVPGIVDSEK 67 (179)
T ss_dssp EEEEESSEEEEEEEETTSCE--EEEEEEEHH-----SSHHHHHHHHHHHHHHHHHHHTCE------EEEEEESSEEETTT
T ss_pred CEEECCCEEEEEEECCCCCE--EEEEEEECC-----CCHHHHHHHHHHHHHHHHhhcccc------cEEEeccccCcCCC
Confidence 699999999999999 8876 335567776 246789999999999999887642 6666666 44431
Q ss_pred cchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcccccc
Q psy4666 120 LTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISK 199 (828)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 199 (828)
|.+ ..
T Consensus 68 --------------------------------g~i-------------------------------------------~~ 72 (179)
T PF00480_consen 68 --------------------------------GRI-------------------------------------------IS 72 (179)
T ss_dssp --------------------------------TEE-------------------------------------------EE
T ss_pred --------------------------------CeE-------------------------------------------Ee
Confidence 233 23
Q ss_pred ceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC----CCCcEEEEEEcccccceeecc
Q psy4666 200 CVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIGVIVGTGFNACYVER 275 (828)
Q Consensus 200 ~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~----~~~~~IGLILGTGtNacYiE~ 275 (828)
.++..|. +.|+.+.|++.+ + +| |.+.||+++.++++.+. +.++.+.+.+|||++++++.+
T Consensus 73 ~~~~~~~---------~~~l~~~l~~~~---~-~p---v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 73 SPNPGWE---------NIPLKEELEERF---G-VP---VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGIGAGIIIN 136 (179)
T ss_dssp CSSGTGT---------TCEHHHHHHHHH---T-SE---EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSEEEEEEET
T ss_pred cCCCCcc---------cCCHHHHhhccc---c-eE---EEEecCCCcceeehhhcCccCCcceEEEEEeecCCCcceecc
Confidence 4446673 367999999977 3 55 59999999999999764 457999999999999999999
Q ss_pred ccccccCCC-CCCCCcEEEec--CCCccCCCCcccccccchhhhhcccCCCcchhHHHHhhccccH
Q psy4666 276 TENVSTFEN-EANKPFVVINT--EWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYM 338 (828)
Q Consensus 276 ~~~i~kl~g-age~G~MiINt--EwG~FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YL 338 (828)
++.+.+.++ +++.|||.++. +-+.||..| |+|.++|+..|
T Consensus 137 g~i~~G~~~~aGeigh~~~~~~~~~c~cG~~G-----------------------ClE~~~S~~Al 179 (179)
T PF00480_consen 137 GKIYRGSNGFAGEIGHMPVDPNGEPCYCGNRG-----------------------CLETYASGRAL 179 (179)
T ss_dssp TEEETTTTS-TTGGGGSBSSTTSSB-TTSSBS-----------------------BHHHHHSHHHH
T ss_pred cccccCCCccccceeeeeccCCCCcCCCCCcC-----------------------cHHHhhChhhC
Confidence 999988877 89999999985 456688887 58999998765
No 30
>PTZ00288 glucokinase 1; Provisional
Probab=99.22 E-value=4.2e-10 Score=126.56 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=92.3
Q ss_pred CCcEEEEEEcccccceeeccccccccCCC-CCCCCcEEEecCCC---ccCCCCcccccccchh-hhhcccCCCcchhHHH
Q psy4666 256 KHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWG---AFGDDGALDFLLTEFD-RTIDDRSLNRGQQIYE 330 (828)
Q Consensus 256 ~~~~IGLILGTGtNacYiE~~~~i~kl~g-age~G~MiINtEwG---~FG~~G~l~~~~T~fD-~~iD~~S~npg~q~fE 330 (828)
....+.+.+|||.|+|++.+.+.+.++.+ ++|.|||.++...+ .||.. .+..+..++. +-.+. + ..-++|
T Consensus 183 ~~~~~Vlg~GTGLG~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~-l~~~l~~~~~~~g~~~-~---~~vs~E 257 (405)
T PTZ00288 183 RGRCMVLAPGTGLGSSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQA-LAGYLASKALSKGIDS-T---VYPIYE 257 (405)
T ss_pred CCCEEEEEeccceeEEEEECCeecCCcccccccccceeeccCCCCccchhHH-HHHHHHhhhccccccc-c---CceeEe
Confidence 34568999999999999999887777777 88999999953111 22211 0000000000 00000 0 022799
Q ss_pred HhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHHHHH-H
Q psy4666 331 KMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCI-D 409 (828)
Q Consensus 331 KmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~~-~ 409 (828)
.++||+.|..+.|.... ... ++ ....+ ...+. +.+. .
T Consensus 258 ~v~SG~GL~~ly~~l~~----~~~------~~----~~~~~-----------------~a~ia-----------~~A~~~ 295 (405)
T PTZ00288 258 DIVSGRGLEFNYAYEKR----GNK------PS----APLKE-----------------AAEVA-----------KLAKYG 295 (405)
T ss_pred EEecHHHHHHHHHHHhc----cCC------Cc----cCcCC-----------------HHHHH-----------HHHHhC
Confidence 99999999887775321 000 00 00011 12222 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcCce-eecchhH
Q psy4666 410 VRYLCRVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSV-YRYHPYF 456 (828)
Q Consensus 410 vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~~ItVGvDGSV-y~~~p~f 456 (828)
.+..|..++++.++++|.++++++..++|..|+|| ||+ .+..|.|
T Consensus 296 gD~~A~~al~~f~~~LG~~~~nlal~l~P~~VvIg--GGi~~~~~~~l 341 (405)
T PTZ00288 296 SDVAAVKAMKRHYKYLMRLAAEISMQFLPLTVVLM--GDNIVYNSFFF 341 (405)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE--CccHHhhHHHH
Confidence 56788999999999999999999999999998887 644 4333433
No 31
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.05 E-value=5.7e-09 Score=115.57 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEEcCceeecchhHHHHHHHHHHhhcc
Q psy4666 405 QDCIDVRYLCRVVSQRSAHLASAGIATLLNRM--DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALIS 469 (828)
Q Consensus 405 ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l--~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p 469 (828)
+.++.++..|..+++..++.+|.+|++++..+ +|+.|++| ||+.+. +.+++.+.+.++.+.|
T Consensus 259 ~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~g--GGI~e~-~~l~~~I~~~l~~~a~ 322 (351)
T TIGR02707 259 KRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLT--GGLAYS-KYFVSEIIKRVSFIAP 322 (351)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc--chhhcC-HHHHHHHHHHHHhhCC
Confidence 34456678888999999999999999999999 78999998 999875 6788999999998866
No 32
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.88 E-value=2.6e-07 Score=97.67 Aligned_cols=157 Identities=22% Similarity=0.319 Sum_probs=100.5
Q ss_pred EEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCCc-cCCCCcccccccchhhh
Q psy4666 238 VAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGA-FGDDGALDFLLTEFDRT 316 (828)
Q Consensus 238 vAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG~-FG~~G~l~~~~T~fD~~ 316 (828)
+.+.||+..++.+..- ..-|-+|-|||+++..+.+ .|++.-...||. +|+.|
T Consensus 90 v~~~~Da~~al~~~~~---~~giv~I~GTGS~~~~~~~------------~g~~~r~gG~G~~~gD~G------------ 142 (271)
T PF01869_consen 90 VIVVNDAAIALYGATA---EDGIVVIAGTGSIAYGRDR------------DGRVIRFGGWGHCLGDEG------------ 142 (271)
T ss_dssp EEEEEHHHHHHHHHST---SSEEEEEESSSEEEEEEET------------TSEEEEEEESCTTTTTTT------------
T ss_pred EEEEHHHHHHhCCCCC---CcEEEEEcCCCceEEEEEc------------CCcEEEeCCCCCCcCCCC------------
Confidence 6999999988777644 4789999999999988752 345555567887 46555
Q ss_pred hcccCCCcchhHHHHhhccccHHHH-HHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHH
Q psy4666 317 IDDRSLNRGQQIYEKMVSGMYMGEI-VRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQ 395 (828)
Q Consensus 317 iD~~S~npg~q~fEKmvSG~YLGEL-vRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~ 395 (828)
||.++|.- ++.++..+.... ++.. -........++.+ ++.++
T Consensus 143 -----------------Sg~~ig~~~L~~~~~~~d~~~-------~~~~-~~~~~~~~~~A~f----------a~~v~-- 185 (271)
T PF01869_consen 143 -----------------SGYWIGRRALRAVLRELDGRA-------EPTP-YAKPASNARIAVF----------APTVF-- 185 (271)
T ss_dssp -----------------SHHHHHHHHHHHHHHHHTTSS-------TTSH-HHHTT-HHHHHCT----------HHHHH--
T ss_pred -----------------cHHHHHHHHHhHHHHHhcCcc-------ccCc-ccCCCChhheehh----------hHHHH--
Confidence 56666542 333333331110 1110 0001112222221 34444
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCe--EEEEEcCceeecchhHHHHHHHHHHhhccc
Q psy4666 396 RLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSI--VTVGVDGSVYRYHPYFHHMMLEKIPALISH 470 (828)
Q Consensus 396 ~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~~--ItVGvDGSVy~~~p~f~~~L~e~lreL~p~ 470 (828)
+.++..+..|..|+.++++.++..+.+++.+.+... +++. |||+++.+ +.+.+++.+++..++
T Consensus 186 ---------~~a~~gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~--GGv~~~~~-~~~~l~~~l~~~~~~ 250 (271)
T PF01869_consen 186 ---------EAAQQGDEVARDILAEAADELAELIKAVLKRLGPEKEPVVLS--GGVFKNSP-LVKALRDALKEKLPK 250 (271)
T ss_dssp ---------HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEE--SGGGGCHH-HHHHHGGGS-HHHHC
T ss_pred ---------HHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEE--CCccCchH-HHHHHHHHHHHhcCC
Confidence 566788999999999999999999999999998764 5555 99998765 445566666665554
No 33
>PRK03011 butyrate kinase; Provisional
Probab=98.70 E-value=1.1e-06 Score=97.90 Aligned_cols=66 Identities=8% Similarity=0.114 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEEcCceeecchhHHHHHHHHHHhhcccceee
Q psy4666 405 QDCIDVRYLCRVVSQRSAHLASAGIATLLNRM--DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV 474 (828)
Q Consensus 405 ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l--~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p~~~i~ 474 (828)
+.++.+++.|..++++.++.+|-+|++++..+ +|+.|++| ||+.+ .+.+++.+++.++.+.| +.|.
T Consensus 261 ~~a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlg--GGI~~-~~~l~~~I~~~l~~~~p-v~i~ 328 (358)
T PRK03011 261 KRIEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLT--GGLAY-SKRLVERIKERVSFIAP-VIVY 328 (358)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe--Ccccc-CHHHHHHHHHHHHhhCC-eEEE
Confidence 33455678889999999999999999999999 78999998 99998 89999999999998755 4443
No 34
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=6.9e-06 Score=89.20 Aligned_cols=261 Identities=20% Similarity=0.226 Sum_probs=153.5
Q ss_pred ccEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEeccccc
Q psy4666 39 GKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDM 117 (828)
Q Consensus 39 G~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFPv~q 117 (828)
-.||+||=|||..|..+-+ +|+.. -+-..=|-.+...+.+.-+..|.+.|.+.+++.+...++++... +
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~~g~vl---g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~----a--- 74 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADEDGNVL---GRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV----A--- 74 (301)
T ss_pred cEEEEEccCCcceEEEEEcCCCcEE---EEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee----e---
Confidence 3588999999999998888 77641 22334467777755588899999999999998876544432211 1
Q ss_pred cccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCcccc
Q psy4666 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTI 197 (828)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 197 (828)
|.= +
T Consensus 75 ----------------------------------gla---~--------------------------------------- 78 (301)
T COG2971 75 ----------------------------------GLA---L--------------------------------------- 78 (301)
T ss_pred ----------------------------------eee---c---------------------------------------
Confidence 111 0
Q ss_pred ccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCcc-EEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccc
Q psy4666 198 SKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN-VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERT 276 (828)
Q Consensus 198 ~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~-vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~ 276 (828)
.|.+.....+. +. +. .|+- -+.|+||+..++++.-..+ .=+-+|+||| ++++-.
T Consensus 79 -----------------ag~~~~~~~~~-~~-~~-l~~a~~v~v~~Dg~iAl~ga~~~~--~Gii~i~GTG--Si~~~~- 133 (301)
T COG2971 79 -----------------AGANVEEAREE-LE-RL-LPFAGKVDVENDGLIALRGALGDD--DGIIVIAGTG--SIGYGR- 133 (301)
T ss_pred -----------------cCcchhHHHHH-HH-Hh-cCccceEEEecChHHHHhhccCCC--CCEEEEecCC--eEEEEE-
Confidence 01111111111 11 12 4443 6789999999999875433 2233455555 555432
Q ss_pred cccccCCCCCCCCcEEEecCCCc-cCCCCcccccccchhhhhcccCCCcchhHHHHhhccccHHHH-HHHHHHHHhhcCc
Q psy4666 277 ENVSTFENEANKPFVVINTEWGA-FGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEI-VRLMMEKFTEEGI 354 (828)
Q Consensus 277 ~~i~kl~gage~G~MiINtEwG~-FG~~G~l~~~~T~fD~~iD~~S~npg~q~fEKmvSG~YLGEL-vRliLl~l~~~gl 354 (828)
..|+...--.||. .||. .||.+||.- ++.+++.+ +|.
T Consensus 134 ----------~gg~~~r~GG~Gf~IgDe-----------------------------gSga~ig~~~L~~~lra~--DG~ 172 (301)
T COG2971 134 ----------KGGRRERVGGWGFPIGDE-----------------------------GSGAWIGREALQEALRAF--DGR 172 (301)
T ss_pred ----------eCCeeEEecCcCcccccc-----------------------------chHHHHHHHHHHHHHHHh--cCC
Confidence 1345555567887 4655 489999864 34444322 222
Q ss_pred ccCCCCCccccccCccChhHHHHhhh-cCCCC--hH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 355 LFNGKGSHQLSTRGIFDTMYISTIEA-ADVGD--IS-ICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIA 430 (828)
Q Consensus 355 LF~g~~~~~L~~~~sfdT~~ls~Ie~-~~~~~--~~-~~~~il~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLA 430 (828)
--...+.+........|-..+-+... ...++ +. -+..|+ +.+..++.++..|+++||..+++.+-
T Consensus 173 ~~~t~L~d~v~~~f~~d~edlv~~~y~a~~~~~~ia~lap~V~-----------~~A~~GD~~A~~Il~~aa~~i~~~~~ 241 (301)
T COG2971 173 REATPLTDAVMAEFNLDPEDLVAFIYKAGPGDKKIAALAPAVF-----------EAARKGDPVAIRILKEAAAYIATLLE 241 (301)
T ss_pred ccCChHHHHHHHHhCCCHHHHHHHHHhcCCchHHHHHhhHHHH-----------HHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 10000011111111122222222211 11111 11 122333 77889999999999999998888887
Q ss_pred HHHhhcCCCeEEEEEcCceeecchhHHHHHHHHH
Q psy4666 431 TLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKI 464 (828)
Q Consensus 431 AIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~l 464 (828)
++....+..++++- ||+++.++.|.+.+++.+
T Consensus 242 ~l~~~~g~~~l~l~--GG~~~~~~~~~~~~~~~l 273 (301)
T COG2971 242 ALSIFNGSEKLSLL--GGLAPSYPYYLSLFRRAL 273 (301)
T ss_pred HHhcccCCceEEEe--ccccccchhhHHHHHHHh
Confidence 77655666777776 999999999999988755
No 35
>KOG1794|consensus
Probab=98.34 E-value=8.4e-05 Score=80.40 Aligned_cols=82 Identities=7% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----eEEEEEcCceeecchhHHHHHHHHHHhh--cccceee---
Q psy4666 405 QDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFS-----IVTVGVDGSVYRYHPYFHHMMLEKIPAL--ISHSVIV--- 474 (828)
Q Consensus 405 ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~-----~ItVGvDGSVy~~~p~f~~~L~e~lreL--~p~~~i~--- 474 (828)
+-+++++++++.|+++|+..+|--+.|++..+.+. ..-|-.-|||+..+..+.+-....++.. .|.....
T Consensus 224 ~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k 303 (336)
T KOG1794|consen 224 EHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPK 303 (336)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeec
Confidence 56688899999999999999999999999998873 1233334999999887777666655543 2322222
Q ss_pred -ecccchhhhhcc
Q psy4666 475 -GTGFNACYVERT 486 (828)
Q Consensus 475 -GtG~nAAyv~~~ 486 (828)
.+..|||+.++-
T Consensus 304 ~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 304 ESSAVGAAILAAS 316 (336)
T ss_pred ccchHHHHHHhhh
Confidence 788999998763
No 36
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=98.09 E-value=9.2e-05 Score=81.46 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=95.2
Q ss_pred CCccEEEEEechHHHHHhcccC-------------C-CCcEEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCC
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYD-------------H-KHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWG 298 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~-------------~-~~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG 298 (828)
+.++-+.++||=.+...+.... . ....+-+=.|||.|.|++.+.. .+..++-+|.|
T Consensus 90 lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~----------~~~~v~~sEgG 159 (316)
T PF02685_consen 90 LGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDG----------DGYYVLPSEGG 159 (316)
T ss_dssp CT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEET----------TEEEEEEE-GG
T ss_pred hCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecC----------CceEeCCCccc
Confidence 4555689999999988887221 1 2234444578999999988742 45567888866
Q ss_pred ccCCCCcccc-cccchhhhhc-ccCCCcchhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHH
Q psy4666 299 AFGDDGALDF-LLTEFDRTID-DRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIS 376 (828)
Q Consensus 299 ~FG~~G~l~~-~~T~fD~~iD-~~S~npg~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls 376 (828)
.. ++ |.|+.+..+= .-...-|.=.+|..+||+.|..+.+-... .. +..++ ..
T Consensus 160 H~------~fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~GL~~ly~~l~~----~~----~~~~~------~~------ 213 (316)
T PF02685_consen 160 HV------DFAPRTDEEAELLRFLRRRYGRVSVERVLSGRGLENLYRFLAG----ER----GAEPP------LL------ 213 (316)
T ss_dssp GS------B---SSHHHHHHHHHHHHHCTS-BHHHCSSHHHHHHHHHHHHC----CT----T--S---------------
T ss_pred cc------cCCCCCHHHHHHHHHHHHhcCCceeEeecchhhHHHHHHHHHh----cc----CCCCC------CC------
Confidence 43 33 4665554331 10001144479999999999887765321 11 00000 01
Q ss_pred HhhhcCCCChHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-eEEEEEcCceeecch
Q psy4666 377 TIEAADVGDISICRNVLYQRLALPHATAQDC-IDVRYLCRVVSQRSAHLASAGIATLLNRMDFS-IVTVGVDGSVYRYHP 454 (828)
Q Consensus 377 ~Ie~~~~~~~~~~~~il~~~lgl~~~s~ed~-~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~-~ItVGvDGSVy~~~p 454 (828)
.+..|. +.+ ...+.+|...++....++|.....+.-.+.+. -|-|+ ||+..+..
T Consensus 214 -----------~~~~I~-----------~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a~gGvyia--GGI~~~~~ 269 (316)
T PF02685_consen 214 -----------SAAEIS-----------AAALEGGDPLAREALDLFARILGRVAGDLALTFLARGGVYIA--GGIAPRLL 269 (316)
T ss_dssp ------------HHHHH-----------HHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE---TTGGGGH
T ss_pred -----------CHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEe--cchhhHHH
Confidence 233333 222 23467888899999999999999888877775 47777 88876654
Q ss_pred hH
Q psy4666 455 YF 456 (828)
Q Consensus 455 ~f 456 (828)
.+
T Consensus 270 ~~ 271 (316)
T PF02685_consen 270 PL 271 (316)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.81 E-value=5e-05 Score=68.07 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=37.2
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEeccc
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPV 115 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFPv 115 (828)
.+||||+|||++++++++ +|+... ...+|+. . +..++++.+.+.+.++ . +-++..++|-
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~----~~~~~~~--~-~~~~~~~~l~~~i~~~----~------~~~i~Ig~pg 61 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLAD----PLEVIPR--T-NKEADAARLKKLIKKY----Q------PDLIVIGLPL 61 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEec----CEEEEEe--c-CcchHHHHHHHHHHHh----C------CCEEEEeCCc
Confidence 479999999999999998 886522 1222221 1 2456777777766542 2 3456566664
No 38
>PRK13318 pantothenate kinase; Reviewed
Probab=97.31 E-value=0.0013 Score=70.08 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=38.2
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
+|+||+|||++|++++++|+. ...+.+|+....+ .++ +.+.+.++++.++..... +-++.+|+
T Consensus 2 iL~IDIGnT~iK~al~d~g~i----~~~~~~~t~~~~~-~~~----~~~~l~~l~~~~~~~~~~-i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKL----VAHWRISTDSRRT-ADE----YGVWLKQLLGLSGLDPED-ITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEECCEE----EEEEEEeCCCCCC-HHH----HHHHHHHHHHHcCCCccc-CceEEEEE
Confidence 789999999999999986543 2345566654432 233 445566666655432222 24555555
No 39
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.038 Score=60.76 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=61.0
Q ss_pred CCccEEEEEechHHHHHhcccCCC-------------Cc-EEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCC
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHK-------------HC-KIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWG 298 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~-------------~~-~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG 298 (828)
+..+-+.|+||=.+.+++-...++ +. ..=+==|||.+.|+..+.. .+...+-+|-
T Consensus 94 Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~----------~~w~~lp~EG- 162 (320)
T COG0837 94 LGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNG----------GGWIPLPGEG- 162 (320)
T ss_pred cCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecC----------CeeEeccCCC-
Confidence 444558999999999998855522 11 2222236777778877543 1233344552
Q ss_pred ccCCCCcccc-cccchhhhhcc-cCCCcchhHHHHhhccccHHHHHHHHH
Q psy4666 299 AFGDDGALDF-LLTEFDRTIDD-RSLNRGQQIYEKMVSGMYMGEIVRLMM 346 (828)
Q Consensus 299 ~FG~~G~l~~-~~T~fD~~iD~-~S~npg~q~fEKmvSG~YLGELvRliL 346 (828)
|+.++ |+|+-|..|=+ -..+-|.-.-|...||+.|-.+.|-+.
T Consensus 163 -----GHvdf~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY~al~ 207 (320)
T COG0837 163 -----GHVDFAPRSEREFQILEYLRARFGRVSAERVLSGPGLVNLYRALC 207 (320)
T ss_pred -----ccccCCCCCHHHHHHHHHHHHhcCccchhhhcccccHHHHHHHHH
Confidence 34444 57777765432 233466677899999999988877654
No 40
>PRK00976 hypothetical protein; Provisional
Probab=97.18 E-value=0.019 Score=63.75 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcCceeecch-hHHHHHHHHH
Q psy4666 405 QDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHP-YFHHMMLEKI 464 (828)
Q Consensus 405 ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p-~f~~~L~e~l 464 (828)
+.++.++..|..++++.+..+|.+|+++++.++|+.|+|| |||.+..+ .+.+++++.+
T Consensus 231 eaA~~GD~~A~~aid~~~~~LA~~IAnLi~llDPe~IVLG--GGVS~~~e~~L~~~I~e~l 289 (326)
T PRK00976 231 EAYEKGDEKAKLAIDTLALFVAMEIASLLLLNPEDNVVLA--GSVGEMDEPDVSERIKELL 289 (326)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEc--CccccCchhHHHHHHHHHh
Confidence 5566778889999999999999999999999999999999 99997753 3555555544
No 41
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.22 E-value=0.015 Score=60.73 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=50.7
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCC---cccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPE---IMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e---~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
||+||+|.|++|+++++ +|+.+...+..++.... ...-+.+++++.+.+++++.+++.+.....+ .|++||-
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I-~aI~is~ 77 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQI-KAIGISG 77 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGE-EEEEEEE
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCccccee-EEEEecc
Confidence 78999999999999999 88865555555544222 1122467899999999999998875443333 5666654
No 42
>PRK13321 pantothenate kinase; Reviewed
Probab=95.73 E-value=0.11 Score=55.64 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=32.7
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhcc
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQK 99 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~ 99 (828)
+|+||+|||++|++++++++. ...+.+|+....+ . +.+.+.+.+++++.+
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i----~~~~~~~T~~~~~-~----~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRL----LRSFRLPTDKSRT-S----DELGILLLSLFRHAG 51 (256)
T ss_pred EEEEEECCCeEEEEEEECCEE----EEEEEEecCCCCC-H----HHHHHHHHHHHHHcC
Confidence 689999999999999984433 2346677665442 3 444455555555543
No 43
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.08 E-value=0.068 Score=62.83 Aligned_cols=73 Identities=14% Similarity=0.324 Sum_probs=50.9
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CC-CcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SP-EIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP 114 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~-e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP 114 (828)
+|+||+|+|+.|+++++ +|+.+...+..++. |. ....-+.+++++-+.+++++.+++.+...+.+ .|+++|.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I-~~Igis~~ 78 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSV-KGIGFDAT 78 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhhe-EEEEeccc
Confidence 68999999999999999 88765444444543 22 12222467799999999999998766543333 56666665
No 44
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.72 E-value=0.094 Score=60.94 Aligned_cols=71 Identities=17% Similarity=0.374 Sum_probs=47.4
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CCC-cccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SPE-IMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~e-~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
+||||+|+|++|+++++ +|+........|+. |.. ...-+.+++++.+.+++++.+++.+.. +.+ .|+++|-
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I-~~Igis~ 76 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEI-LFVSFST 76 (505)
T ss_pred EEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-Cce-EEEEEec
Confidence 68999999999999999 88764433333442 111 122245678999999999998865543 222 5666654
No 45
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.50 E-value=0.1 Score=60.55 Aligned_cols=71 Identities=11% Similarity=0.264 Sum_probs=47.9
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CCC-cccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEe
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SPE-IMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~e-~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFS 112 (828)
+|+||+|+|++|+++++ +|+.+...+..++. |.. ...-+.+.+++.+.+++++.+++.+...+.+ .|+.||
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i-~aIgis 77 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI-AAIGIT 77 (493)
T ss_pred EEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe-eEEEEe
Confidence 68999999999999999 88765444444432 211 0111356799999999999998876443332 555554
No 46
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.24 E-value=0.12 Score=60.25 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=51.1
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCC-----CcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISP-----EIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~-----e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
.+|+||+|.|+.|+++++ +|+.+...+..|+.+. ....-+.+++++.+.+++++.+.+.+...+.+ .|++||-
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I-~aI~~s~ 82 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDI-AAVSATS 82 (520)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccce-EEEEEEC
Confidence 468999999999999999 8876555455554321 11122456899999999999987765443333 5777773
No 47
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.09 E-value=0.13 Score=59.77 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=49.6
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CCC-cccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SPE-IMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~e-~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
.+|+||+|+|++|+++++ +|+.....+..|++ |.. ...-+.+++++-+.+++++.+++.+...+.+ .|+++|-
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I-~~Igis~ 82 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQI-AAIGITN 82 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHe-eEEEEec
Confidence 368999999999999999 88765554455543 221 1112467799999999999988765433322 5555554
No 48
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.26 E-value=0.18 Score=57.63 Aligned_cols=70 Identities=19% Similarity=0.363 Sum_probs=48.6
Q ss_pred EEEEeCCceEEEEEEE-eCceeEEEEEEEec---CCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEe
Q psy4666 42 LALDLGGTNFRVLMIY-AGEKFRMEHKTYPI---SPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I---p~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFS 112 (828)
|+||+|.|++|+++++ +|+.+...+..++. ++....-+.+++++.+.+++++++++.+....++ .|+++|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I-~gIgvs 74 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDI-KGIGIS 74 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccE-EEEEEe
Confidence 5899999999999999 88764333333332 1111122467789999999999999876544443 677777
No 49
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.09 E-value=0.24 Score=58.15 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=52.6
Q ss_pred cEEEEEeCCceEEEEEEE--eCceeEEEEEEEec-------C-------CCcccCCccchHHHHHHHHHHHHhhccCCCC
Q psy4666 40 KFLALDLGGTNFRVLMIY--AGEKFRMEHKTYPI-------S-------PEIMTGPGEQLFDYIAESLENFVREQKAENE 103 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~--~G~~~~~~~~~~~I-------p-------~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~ 103 (828)
.+|+||+|.|+.|+++++ +|+.+...+..|++ | +....-+++++++-+.+++++.+++.+...+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 378999999999999999 68765555556652 3 2223334678999999999999988754433
Q ss_pred ccceEEEEecc
Q psy4666 104 HLPLGFTFSFP 114 (828)
Q Consensus 104 ~l~LGftFSFP 114 (828)
.+ .|++||--
T Consensus 82 ~I-~aI~~s~q 91 (536)
T TIGR01234 82 DV-VGIGVDFT 91 (536)
T ss_pred HE-EEEEEecC
Confidence 33 67777654
No 50
>PRK15027 xylulokinase; Provisional
Probab=92.89 E-value=0.33 Score=56.18 Aligned_cols=70 Identities=13% Similarity=0.324 Sum_probs=48.1
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEec--C-CCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEe
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--S-PEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p-~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFS 112 (828)
.||+||+|.|++|+++++ +|+.+...+..|++ | +....-+.+++++-+.+++++.+++... +.+ .|++||
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~--~~I-~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL--QDV-KALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc--cce-eEEEEe
Confidence 389999999999999999 88865545555554 2 1122224567899999999999876522 222 455554
No 51
>PLN02295 glycerol kinase
Probab=92.83 E-value=0.31 Score=56.95 Aligned_cols=72 Identities=8% Similarity=0.146 Sum_probs=49.3
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CC-CcccCCccchHHHHHHHHHHHHhhccCCCCcc---ceEEEEe
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SP-EIMTGPGEQLFDYIAESLENFVREQKAENEHL---PLGFTFS 112 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~-e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l---~LGftFS 112 (828)
+|+||+|.|++|+++++ +|+.+...+..|++ |+ ....-+++++++-+.+++++.+++.+...+.+ ..|++||
T Consensus 2 vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred EEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 68999999999999999 89865444445543 21 11222467899999999999998876543331 2455544
No 52
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.78 E-value=0.36 Score=56.25 Aligned_cols=73 Identities=10% Similarity=0.174 Sum_probs=48.9
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEec--C-CCcccCCccchHHHHHHHHHHHHhhccCCCC--ccceEEEEec
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--S-PEIMTGPGEQLFDYIAESLENFVREQKAENE--HLPLGFTFSF 113 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p-~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~--~l~LGftFSF 113 (828)
.+|+||+|.|++|+++++ +|+.+...+..+++ | +....-+.+++|+-+.+++.+.+.+.+.... . ..|++||-
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~-I~aIgis~ 81 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK-IKAIGITN 81 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc-eEEEEeec
Confidence 478999999999999999 88765544444442 1 1111223567899999999999887653322 2 35666654
No 53
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.51 E-value=0.34 Score=56.58 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=48.3
Q ss_pred cEEEEEeCCceEEEEEEE-e-CceeEEEEEEEecCCC---cccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEe
Q psy4666 40 KFLALDLGGTNFRVLMIY-A-GEKFRMEHKTYPISPE---IMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~-G~~~~~~~~~~~Ip~e---~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFS 112 (828)
.|||||+|.|+.|+.+++ + |.........+++... ...-+.++++..+.++|.+.+++.......+ .|+++|
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I-~aI~is 81 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAI-AAIGIS 81 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhc-eEEEEe
Confidence 578999999999999999 7 5544433334443321 1223568899999999999999875333332 444444
No 54
>PRK10331 L-fuculokinase; Provisional
Probab=91.93 E-value=0.47 Score=54.73 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=45.8
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCC-----CcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISP-----EIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~-----e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
.+|+||+|.|+.|+++++ +|+.....+..++.+. ....-+.+++++.+.+++++.+++... .. ..|++||-
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~~--~~-I~~I~is~ 79 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSELTE--CH-IRGITVTT 79 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCc--cc-eEEEEEec
Confidence 368999999999999999 8976443333333111 111224566899999999998876421 22 25565554
No 55
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.86 E-value=0.65 Score=53.60 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=45.6
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCC-----CcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEec
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISP-----EIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSF 113 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~-----e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSF 113 (828)
+|+||+|.|+.|+++++ +|+.+...+..++.+. ....-+.+++++.+.+++++.+.+. ..+++ .|++||-
T Consensus 3 ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I-~aI~~s~ 78 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSEL--TEKHI-RGIAVTT 78 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhhc--Chhce-EEEEEec
Confidence 67999999999999999 8876444343333111 1112245679999999999998642 12222 5666654
No 56
>PRK04123 ribulokinase; Provisional
Probab=89.99 E-value=0.93 Score=53.35 Aligned_cols=73 Identities=18% Similarity=0.373 Sum_probs=46.7
Q ss_pred cEEEEEeCCceEEEEEEE--eCceeEEEEEEEec--------CCC-cccCCccchHHHHHHHHHHHHhhccCCCCccceE
Q psy4666 40 KFLALDLGGTNFRVLMIY--AGEKFRMEHKTYPI--------SPE-IMTGPGEQLFDYIAESLENFVREQKAENEHLPLG 108 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~--~G~~~~~~~~~~~I--------p~e-~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LG 108 (828)
.|||||+|.|+.|+++++ +|+.....+..|+. |+. ...-+.+++++-+.+++++.+++.+.....+ .|
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I-~a 82 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAV-VG 82 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhE-EE
Confidence 478999999999999999 66654444444542 111 1111245688889999999887765432222 55
Q ss_pred EEEec
Q psy4666 109 FTFSF 113 (828)
Q Consensus 109 ftFSF 113 (828)
++||-
T Consensus 83 Igis~ 87 (548)
T PRK04123 83 IGVDF 87 (548)
T ss_pred EEEec
Confidence 65554
No 57
>PLN02669 xylulokinase
Probab=87.39 E-value=2 Score=51.13 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=46.6
Q ss_pred cCCCCcccccEEEEEeCCceEEEEEEE-eCceeEEEEEEEec--CCC-----cccCCcc----------chHHHHHHHHH
Q psy4666 31 DLPQGTETGKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPI--SPE-----IMTGPGE----------QLFDYIAESLE 92 (828)
Q Consensus 31 ~lP~G~E~G~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~I--p~e-----~~~g~~~----------~lFd~IA~~i~ 92 (828)
++|.+. .||+||+|.|++|+++++ +|+.+...+..|+. |.. ... +.+ ..++-+..+++
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~-dp~~~~~~~~~~~~w~~al~~~l~ 78 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYR-DPKVNGRIVSPTLMWVEALDLLLQ 78 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEe-CCcccCccCCCHHHHHHHHHHHHH
Confidence 456554 588999999999999999 88765444444442 211 111 112 34488888888
Q ss_pred HHHhhccCCCCccceEEEEe
Q psy4666 93 NFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 93 ~fl~e~~~~~~~l~LGftFS 112 (828)
+.+ +.+...+.+ .|+++|
T Consensus 79 ~l~-~~~~~~~~I-~aIs~s 96 (556)
T PLN02669 79 KLA-KEKFPFHKV-VAISGS 96 (556)
T ss_pred HHH-HcCCChhhE-EEEEec
Confidence 866 444332333 677666
No 58
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=87.35 E-value=1.5 Score=53.02 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC----CCcEEEEEEccccc
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH----KHCKIGVIVGTGFN 269 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~----~~~~IGLILGTGtN 269 (828)
=.+.+.+|...-| + +++.++|+.+|++++..... ....+-+=+|-||=
T Consensus 155 qR~a~~~Aa~~AG-l--~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~ 206 (653)
T PTZ00009 155 QRQATKDAGTIAG-L--NVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTF 206 (653)
T ss_pred HHHHHHHHHHHcC-C--ceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeE
Confidence 4566777775555 4 46999999999999876542 23344344555544
No 59
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=85.90 E-value=3.4 Score=50.32 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCCcccccEEEEEeCCceEEEEEEEeCc
Q psy4666 19 TATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 19 ~s~~~MlPT~v~~lP~G~E~G~fLalDLGGTn~Rv~lV~~G~ 60 (828)
.++..+|-+++.. | -.+.++|||||.||..|+.+++|.
T Consensus 11 ~~~~~~~~~~~~~-~---~~~~viGIDLGTTnS~vA~~~~~~ 48 (657)
T PTZ00186 11 AASAARLARHESQ-K---VQGDVIGVDLGTTYSCVATMDGDK 48 (657)
T ss_pred hhhcccccccccC-c---ccceEEEEEeCcCeEEEEEEeCCc
Confidence 4555666666642 2 134689999999999999887553
No 60
>PRK13324 pantothenate kinase; Reviewed
Probab=85.23 E-value=13 Score=40.34 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=33.3
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEEEEEEecCC-CcccCCccchHHHHHHHHHHHHhhcc
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISP-EIMTGPGEQLFDYIAESLENFVREQK 99 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~-e~~~g~~~~lFd~IA~~i~~fl~e~~ 99 (828)
.|+||+|=||+++++.++++. ...|.+++ +.. ...|..+..+.+++...+
T Consensus 2 iL~iDiGNT~ik~gl~~~~~~----~~~~r~~t~~~~-----~t~de~~~~l~~~~~~~~ 52 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDRI----VSQIRYATSSVD-----STSDQMGVFLRQALRENS 52 (258)
T ss_pred EEEEEeCCCceEEEEEECCEE----EEEEEEecCccc-----cchHHHHHHHHHHHHhcC
Confidence 689999999999999874432 23467776 433 244555666666766544
No 61
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=84.44 E-value=21 Score=39.98 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC--CCcEEEEEEcccccc
Q psy4666 216 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH--KHCKIGVIVGTGFNA 270 (828)
Q Consensus 216 G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~--~~~~IGLILGTGtNa 270 (828)
-++.+..+.+++..-| .++..++++..|++.+..... ....+-+=+|.|+--
T Consensus 156 ~~~~v~~~~~~~~~aG---l~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~ 209 (371)
T TIGR01174 156 SSTILRNLVKCVERCG---LEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTD 209 (371)
T ss_pred EHHHHHHHHHHHHHcC---CCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEE
Confidence 4667788888886555 446899999999998753322 233455556666543
No 62
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.32 E-value=6 Score=48.35 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCC--CcEEEEEEcccc
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHK--HCKIGVIVGTGF 268 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~--~~~IGLILGTGt 268 (828)
=.+.+.+|.+.-| + +++.++|+.+|++++...... ...+-+=+|-||
T Consensus 150 qR~a~~~Aa~~AG-l--~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT 198 (668)
T PRK13410 150 QRQATRDAGRIAG-L--EVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGT 198 (668)
T ss_pred HHHHHHHHHHHcC-C--CeEEEecchHHHHHHhccccCCCCEEEEEECCCCe
Confidence 3456667665555 4 468999999999998765432 233333355554
No 63
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=83.90 E-value=15 Score=39.50 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=30.0
Q ss_pred EEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHH
Q psy4666 42 LALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAE 89 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~ 89 (828)
|+||+|=||+++++.++++. ...|.+|++... +.+++..++..
T Consensus 2 L~iDiGNT~i~~g~~~~~~~----~~~~r~~t~~~~-t~de~~~~l~~ 44 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNKV----YQFWRLATNLMK-TYDEHSEFLKE 44 (243)
T ss_pred EEEEECCCcEEEEEEECCEE----EEEEEecCCCcc-ChHHHHHHHHH
Confidence 78999999999999985543 235788887665 44555444333
No 64
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=82.34 E-value=20 Score=40.68 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHhhc-CCCeEEEEEcCceeecchhHHHHHHHHHHhhcccceee----------ecccchhhhhc
Q psy4666 427 AGIATLLNRM-DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV----------GTGFNACYVER 485 (828)
Q Consensus 427 AgLAAIl~~l-~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p~~~i~----------GtG~nAAyv~~ 485 (828)
-.+++++... +++.|.+. |++. ..|.|.+.+.+.+.++.| ..+. -+..|+|+++.
T Consensus 249 k~V~~l~~~~~~~~~IilS--Gr~~-~~~~~~~~l~~~l~~~~~-~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 249 KAVASLLASVPDPDEIILS--GRFS-RIPEFRKKLEDRLEDYFP-VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred HHHHHHhcccCCCCEEEEe--cccc-ccHHHHHHHHHHHHhhcc-cceeecccccccchhhhhhHHHHhh
Confidence 3444555555 45668887 8776 568888889999988876 2221 36678888875
No 65
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=82.01 E-value=5.3 Score=48.66 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC--CCcEEEEEEcccc
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH--KHCKIGVIVGTGF 268 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~--~~~~IGLILGTGt 268 (828)
=.+.+.+|...-| + +++.++|+.+|++++..... ....+-+=+|-||
T Consensus 189 qR~a~~~Aa~~AG-l--~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT 237 (663)
T PTZ00400 189 QRQATKDAGKIAG-L--DVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGT 237 (663)
T ss_pred HHHHHHHHHHHcC-C--ceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCe
Confidence 3556677765555 4 46999999999999876543 2333333344444
No 66
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=81.91 E-value=6.9 Score=43.02 Aligned_cols=74 Identities=18% Similarity=0.365 Sum_probs=49.5
Q ss_pred cEEEEEeCCceEEEEEEE-eCceeEE-EEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEeccccc
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEKFRM-EHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDM 117 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~~~~-~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFPv~q 117 (828)
.++|||+|.+++|++.++ .+..+++ .....++|++........=.+.+++.|.+.+++.+...+ -..+++|-.+
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~~~k----~v~~alp~~~ 79 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGINTK----KAATAVPGSA 79 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCCCcc----eEEEEecCCe
Confidence 578999999999999998 4544444 344668887765432222346778888888888765433 3456666544
No 67
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=80.21 E-value=5 Score=44.31 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
-.+.+++++++-| ++++.++|+.+|++++....
T Consensus 110 ~r~~~~~a~~~ag---~~~~~li~ep~Aaa~~~g~~ 142 (336)
T PRK13928 110 EKRAVREAAEQAG---AKKVYLIEEPLAAAIGAGLD 142 (336)
T ss_pred HHHHHHHHHHHcC---CCceEecccHHHHHHHcCCc
Confidence 5667778876554 45689999999999997664
No 68
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=79.73 E-value=4.9 Score=48.45 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+.+|...-| + +++.++|+.+|++++....
T Consensus 148 qR~a~~~Aa~~AG-l--~v~~li~EptAAAl~y~~~ 180 (627)
T PRK00290 148 QRQATKDAGKIAG-L--EVLRIINEPTAAALAYGLD 180 (627)
T ss_pred HHHHHHHHHHHcC-C--ceEEEecchHHHHHHhhhc
Confidence 4456666665454 4 4689999999999987554
No 69
>PRK13411 molecular chaperone DnaK; Provisional
Probab=79.64 E-value=7.3 Score=47.40 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+.+|...-| + +++.++|+.+|++++....
T Consensus 148 qR~a~~~Aa~~AG-l--~v~~li~EPtAAAl~y~~~ 180 (653)
T PRK13411 148 QRQATKDAGTIAG-L--EVLRIINEPTAAALAYGLD 180 (653)
T ss_pred HHHHHHHHHHHcC-C--CeEEEecchHHHHHHhccc
Confidence 4556677765555 4 5699999999999987553
No 70
>PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D ....
Probab=79.46 E-value=1.1 Score=48.74 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhcccccccccccccccccccCcccchhheeecchhhhHHHHHHHhhccccccCch
Q psy4666 715 FEETKDQWRRTIREAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLAKLDKVKEILDIVLHQHSDLLRPN 794 (828)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (828)
+..+..+|.+.++++|.++++.+++. .-+.-+....||||+.|++|.+..|.+ .++++.+.+.+. ..+.
T Consensus 37 ~~~l~~~w~~~L~~~i~~~~~~~~~~--~~~~~~~~~~~p~L~~l~~e~lA~Iti-------~~~l~~~~~~~~--~~~g 105 (318)
T PF14700_consen 37 LQALMWQWYEPLAEAIQEEQEKLKAS--SKKRGRRAAYGPFLKLLPPEKLAVITI-------REVLNLLSSSEG--YSKG 105 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----HCCCTT--HCCHHCCTS-HHHHHHHHH-------HHHHHHHTTSSS--E---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCcchHHHHHHcCCHHHHHHHHH-------HHHHHHhccCCC--Ccch
Confidence 56788899999999999999998864 234455788999999999999998865 466666664322 1110
Q ss_pred hHhHHHHHHhhcc
Q psy4666 795 IQTFAAVLECLGR 807 (828)
Q Consensus 795 ~~~~~~~~~~~~~ 807 (828)
.++..+...+|+
T Consensus 106 -~~~~~~~~~IG~ 117 (318)
T PF14700_consen 106 -MKLTRLAIAIGR 117 (318)
T ss_dssp --EHHHHHHHHHH
T ss_pred -hHHHHHHHHHHH
Confidence 156666666665
No 71
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=79.11 E-value=38 Score=37.39 Aligned_cols=32 Identities=3% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 220 VELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 220 v~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
.+.+++++..-| ++++.++|+.++++++....
T Consensus 114 r~~~~~~~~~ag---~~~~~li~ep~aaa~~~g~~ 145 (333)
T TIGR00904 114 RRAVKESALSAG---AREVYLIEEPMAAAIGAGLP 145 (333)
T ss_pred HHHHHHHHHHcC---CCeEEEecCHHHHHHhcCCc
Confidence 456777775444 45699999999999986553
No 72
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=79.01 E-value=6.5 Score=41.70 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=33.5
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~ 101 (828)
+++||+|.|+.|++++++|+.+ ...+. ++ ...++-+.+.+.+.+++.+..
T Consensus 2 ~lGIDiGtts~K~vl~d~g~il---~~~~~-~~-------~~~~~~~~~~l~~~~~~~~~~ 51 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDGKVI---GYKWL-DT-------TPVIEETARAILEALKEAGIG 51 (248)
T ss_pred EEEEEcChhheEEEEEcCCEEE---EEEEe-cC-------CCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999855431 11122 22 245677778888887665543
No 73
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=78.47 E-value=4.8 Score=48.12 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
-.+.+.+|...-| + +++.++|+.+|++++....
T Consensus 145 qR~a~~~Aa~~AG-l--~v~~li~EptAAAl~y~~~ 177 (595)
T TIGR02350 145 QRQATKDAGKIAG-L--EVLRIINEPTAAALAYGLD 177 (595)
T ss_pred HHHHHHHHHHHcC-C--ceEEEecchHHHHHHHhhc
Confidence 4566677765555 4 4689999999999987554
No 74
>KOG1038|consensus
Probab=78.10 E-value=3.7 Score=50.96 Aligned_cols=50 Identities=22% Similarity=0.533 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhh--cccccccccccccccccccCcccchhheee
Q psy4666 715 FEETKDQWRRTIREAFNRDLSMIRTQ--HNKLKTYREVNIYPFLRVLTPEEYEDIVLL 770 (828)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (828)
+..+-..|.+-++.||.+|++-+|++ |+.+ +-||||--|+...+..|.+.
T Consensus 289 lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~------~Y~p~L~lL~a~k~aviti~ 340 (1088)
T KOG1038|consen 289 LKSLFLGWFKPLRDAIKEEINLLRALVRKGRL------NYAPFLKLLDADKMAVITIH 340 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------ccchHHHhcChhhHHHHHHH
Confidence 56778899999999999999999999 7766 77999999999988888653
No 75
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=77.39 E-value=25 Score=38.56 Aligned_cols=33 Identities=3% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+++++..-| ++.+.++|+.++++++....
T Consensus 111 ~r~~~~~a~~~ag---~~~~~li~ep~aaa~~~g~~ 143 (334)
T PRK13927 111 ERRAVRESALGAG---AREVYLIEEPMAAAIGAGLP 143 (334)
T ss_pred HHHHHHHHHHHcC---CCeeccCCChHHHHHHcCCc
Confidence 4466777776544 55699999999999987554
No 76
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=76.36 E-value=5.5 Score=47.31 Aligned_cols=80 Identities=8% Similarity=0.234 Sum_probs=58.0
Q ss_pred cEEEEEeCCceEEEEEEE--eCceeEEEEE---EEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEecc
Q psy4666 40 KFLALDLGGTNFRVLMIY--AGEKFRMEHK---TYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP 114 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~--~G~~~~~~~~---~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFP 114 (828)
.+++||+|.-+-|+++++ +|+......+ .+.++.....-+..+.+.-+-.+|.+.+++.+.....+ .|++|.|-
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V-~gIGvDaT 82 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADV-VGIGVDAT 82 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHe-eEEEEcce
Confidence 468999999999999999 5874333222 23344444444577889999999999999999877555 78888887
Q ss_pred cccccc
Q psy4666 115 VDMMSL 120 (828)
Q Consensus 115 v~q~~l 120 (828)
|.---+
T Consensus 83 cSlvv~ 88 (544)
T COG1069 83 CSLVVI 88 (544)
T ss_pred eeeEEE
Confidence 544333
No 77
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=76.25 E-value=9.7 Score=46.06 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
-.+.+.+|...-| ++ ++.++|+.+|++++....
T Consensus 164 qR~a~~~Aa~~AG-l~--v~~li~EPtAAAlay~~~ 196 (616)
T PRK05183 164 QRQATKDAARLAG-LN--VLRLLNEPTAAAIAYGLD 196 (616)
T ss_pred HHHHHHHHHHHcC-CC--eEEEecchHHHHHHhhcc
Confidence 4566777776555 44 689999999999986554
No 78
>PLN03184 chloroplast Hsp70; Provisional
Probab=75.76 E-value=13 Score=45.42 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+.+|...-| + +++.++|+.+|++++..+.
T Consensus 187 qR~a~~~Aa~~AG-l--~v~~li~EPtAAAlayg~~ 219 (673)
T PLN03184 187 QRTATKDAGRIAG-L--EVLRIINEPTAASLAYGFE 219 (673)
T ss_pred HHHHHHHHHHHCC-C--CeEEEeCcHHHHHHHhhcc
Confidence 3556666665444 4 5699999999999987665
No 79
>CHL00094 dnaK heat shock protein 70
Probab=75.48 E-value=19 Score=43.47 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+.+|.+.-| + +++.++|+.+|++++....
T Consensus 150 qR~a~~~Aa~~AG-l--~v~~li~EptAAAlay~~~ 182 (621)
T CHL00094 150 QRQATKDAGKIAG-L--EVLRIINEPTAASLAYGLD 182 (621)
T ss_pred HHHHHHHHHHHcC-C--ceEEEeccHHHHHHHhccc
Confidence 3456667665444 4 5699999999999986544
No 80
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=72.45 E-value=7.2 Score=41.22 Aligned_cols=73 Identities=32% Similarity=0.303 Sum_probs=61.6
Q ss_pred hHHHHHHHHhhhccccchhHHHHHHHhhchhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4666 662 ITQKVMNQAISNINRKSEESAKVKKLLMDKEKLIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDL 734 (828)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (828)
-||..|.|||..=-.-.|-.|||..|--.+|.|-||.-.|=.--.-.|.-|+.|.++-++--|.-..-|-|+.
T Consensus 5 etqemmkqaieagvkvreleakveelnkereelkkereanipsekpqdverkfmrelgdkmtempeqgflref 77 (347)
T PF06673_consen 5 ETQEMMKQAIEAGVKVRELEAKVEELNKEREELKKEREANIPSEKPQDVERKFMRELGDKMTEMPEQGFLREF 77 (347)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHhHHHhhCchhhHHHHh
Confidence 3899999999887777788899999999999999998777666666788999999999998887777777664
No 81
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=71.65 E-value=2.8 Score=43.94 Aligned_cols=25 Identities=72% Similarity=1.023 Sum_probs=19.7
Q ss_pred cccceecccccchHHHHHHHHHHHh
Q psy4666 158 TKGFKCEGVVGANVVELLQQALVRR 182 (828)
Q Consensus 158 ~kGf~~~~~~~~~~~~~l~~~~~~~ 182 (828)
+|||.+.+++|.++.++|+++|.|+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~ 181 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRR 181 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHH
T ss_pred eccccccCCCCCccchhHHHHHHHh
Confidence 5899999999999999999999883
No 82
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=70.09 E-value=14 Score=40.92 Aligned_cols=63 Identities=17% Similarity=0.464 Sum_probs=40.3
Q ss_pred EEEeCCceEEEEEEE-eCceeEE-EEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCcc
Q psy4666 43 ALDLGGTNFRVLMIY-AGEKFRM-EHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHL 105 (828)
Q Consensus 43 alDLGGTn~Rv~lV~-~G~~~~~-~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l 105 (828)
|||+|-.++|+..++ .++.+++ .....++|..........=.+.+++.|++.+++++...++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~k~v 65 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIKGKKV 65 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT----EE
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCCCeE
Confidence 799999999999999 6655555 34577899887543222346789999999999998765544
No 83
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=69.73 E-value=7.9 Score=44.62 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=37.6
Q ss_pred EEEEeCCceEEEEEEE-eCc--eeEEEEEEEecCCCcccCC------ccchHHHHHHHHHHHHhhccCCCCccceEEEEe
Q psy4666 42 LALDLGGTNFRVLMIY-AGE--KFRMEHKTYPISPEIMTGP------GEQLFDYIAESLENFVREQKAENEHLPLGFTFS 112 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~-~G~--~~~~~~~~~~Ip~e~~~g~------~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFS 112 (828)
||||+|.|+.|+.+++ +|. ...+ ...+..++.....+ .+++++.+.+++++.... + .. ..|++||
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-~---~~-i~~Igis 74 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTL-EEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-G---IA-PDSIGID 74 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEE-EEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-C---CC-ceEEEEe
Confidence 5899999999999999 632 2221 11122222211111 235788888888887653 1 11 3566665
Q ss_pred c
Q psy4666 113 F 113 (828)
Q Consensus 113 F 113 (828)
.
T Consensus 75 ~ 75 (454)
T TIGR02627 75 T 75 (454)
T ss_pred c
Confidence 4
No 84
>PRK13326 pantothenate kinase; Reviewed
Probab=69.46 E-value=59 Score=35.49 Aligned_cols=44 Identities=11% Similarity=0.276 Sum_probs=29.7
Q ss_pred cEEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHH
Q psy4666 40 KFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIA 88 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA 88 (828)
..|+||+|=||+++++.++++. ...|.++++... +.++++..+.
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~l----~~~~r~~t~~~~-t~de~~~~l~ 50 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNKM----QIFCKLKTKLDL-SFDELYSFLK 50 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCEE----EEEEEeccCCCC-CHHHHHHHHh
Confidence 4689999999999999985543 235777766544 3444444443
No 85
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=67.46 E-value=3.5 Score=48.62 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCC-cEEEEEE--cccc
Q psy4666 218 NVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKH-CKIGVIV--GTGF 268 (828)
Q Consensus 218 DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~-~~IGLIL--GTGt 268 (828)
.=.+.+.+|...-| + +++.++|+.+|++++.+..... ...-+++ |-|+
T Consensus 149 ~qr~~~~~Aa~~ag-l--~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt 199 (602)
T PF00012_consen 149 EQRQALRDAAELAG-L--NVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGT 199 (602)
T ss_dssp HHHHHHHHHHHHTT----EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSE
T ss_pred hhhhcccccccccc-c--ccceeecccccccccccccccccccceeccccccce
Confidence 35677888887666 4 5689999999999986544322 3344444 4443
No 86
>KOG0162|consensus
Probab=66.63 E-value=4 Score=49.78 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcccccccccCccccccceeecccc--CcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHH
Q psy4666 171 VVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTK--GFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCL 248 (828)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~n~~WtK--gf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTL 248 (828)
|+|-|||+|-. |-.-.+.+.+.--.++||- -|+ ++=|+++++. . .|--+.+++||+.||+
T Consensus 409 VNEKLQQIFIe-------LTLKaEQEeYvrE~I~WTpIkYFn-----NKvVCDLIE~-----K-~PPGims~ldD~~At~ 470 (1106)
T KOG0162|consen 409 VNEKLQQIFIE-------LTLKAEQEEYVREGIKWTPIKYFN-----NKVVCDLIEN-----K-RPPGIMSALDDVCATA 470 (1106)
T ss_pred HHHHHHHHHHH-------HhhhhhHHHHHHhcccccchhhcC-----Ceeeeehhhc-----c-CCchHHHHHHHHHHHh
Confidence 88999999965 3333444445555689983 233 4556777766 2 3555789999999998
Q ss_pred Hhc
Q psy4666 249 VSC 251 (828)
Q Consensus 249 Lae 251 (828)
=+-
T Consensus 471 Ha~ 473 (1106)
T KOG0162|consen 471 HAD 473 (1106)
T ss_pred ccc
Confidence 664
No 87
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=66.26 E-value=1.4e+02 Score=34.49 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCC--CcEEEEEEcccccc
Q psy4666 217 ANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHK--HCKIGVIVGTGFNA 270 (828)
Q Consensus 217 ~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~--~~~IGLILGTGtNa 270 (828)
++..+-+.+++.+-| .++..++++..|++.+..+.+. ...+-+=+|.||--
T Consensus 165 ~~~~~~~~~a~~~aG---l~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTd 217 (420)
T PRK09472 165 NDMAKNIVKAVERCG---LKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMD 217 (420)
T ss_pred hHHHHHHHHHHHHcC---CeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceE
Confidence 345556666775554 4468999999999997654432 23444456666554
No 88
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=63.73 E-value=46 Score=38.17 Aligned_cols=190 Identities=19% Similarity=0.345 Sum_probs=84.3
Q ss_pred EEEEEE-eCceeEE-EEEEEecCCCccc-------CC----------ccchHHHHHHHHHHHHhhccCCCCcc-ceEEEE
Q psy4666 52 RVLMIY-AGEKFRM-EHKTYPISPEIMT-------GP----------GEQLFDYIAESLENFVREQKAENEHL-PLGFTF 111 (828)
Q Consensus 52 Rv~lV~-~G~~~~~-~~~~~~Ip~e~~~-------g~----------~~~lFd~IA~~i~~fl~e~~~~~~~l-~LGftF 111 (828)
=+++|+ +|..++. ....+++|+++.. .. ..+|=++.|+++..|+++++...+.+ .+|+
T Consensus 16 D~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~l~~~~i~~~~I~~Igs-- 93 (364)
T PF03702_consen 16 DAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAASSLDELCELDRELGELFADAVNQFLKKNGISPSDIDLIGS-- 93 (364)
T ss_dssp EEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGGEEEEEE--
T ss_pred hheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEe--
Confidence 345566 4433332 4566788777431 11 13456778999999999988754332 3555
Q ss_pred eccccccccchhhhhhhhccccccccccccCCCcccccCCe----EEEeccccceecccccchHHHHHHHHHHHhhcccc
Q psy4666 112 SFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPG----VLVRWTKGFKCEGVVGANVVELLQQALVRRCGISN 187 (828)
Q Consensus 112 SFPv~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G----~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (828)
|=--+||.|. .-+-.|.| +.+..+.|++-
T Consensus 94 -------------------------------HGQTv~H~P~~~~~~TlQiG~~----------------~~iA~~tgi~v 126 (364)
T PF03702_consen 94 -------------------------------HGQTVFHRPEGQHPFTLQIGDP----------------AVIAERTGITV 126 (364)
T ss_dssp ---------------------------------EEEEEECCCTTTEEEEES-H----------------HHHHHHHSS-E
T ss_pred -------------------------------CCcceecCcCCCCCceEecCCH----------------HHHHHHHCcCE
Confidence 3334555552 11122222 34566667766
Q ss_pred cccccCccccccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCCcEEEEEEccc
Q psy4666 188 VLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTG 267 (828)
Q Consensus 188 ~~~~~~~~~i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTG 267 (828)
+.=||... + .-|-+|-+++..+..+|=+.. . +..+++| +|-=
T Consensus 127 V~DFR~~D-------i-------a~GGqGAPLvP~~~~~lf~~~--~-~~~~~lN---------------------IGGI 168 (364)
T PF03702_consen 127 VSDFRSAD-------I-------AAGGQGAPLVPFFHQLLFRHP--K-KPRAVLN---------------------IGGI 168 (364)
T ss_dssp EE--CHHH-------H-------HTTS-S---CHHHHHHHH--T--T-S-EEEEE---------------------ESSE
T ss_pred EeechHHH-------H-------hccCCCCCcccHHHHHHhCCC--C-CCEEEEe---------------------cCCc
Confidence 64444433 2 234579999999999884431 1 1234444 6766
Q ss_pred ccceeeccccccccCCCCCCCCcEEEecCCCccCCCCcccccccchhhhhcc-cCCCcchhHHHHhhccccH
Q psy4666 268 FNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDD-RSLNRGQQIYEKMVSGMYM 338 (828)
Q Consensus 268 tNacYiE~~~~i~kl~gage~G~MiINtEwG~FG~~G~l~~~~T~fD~~iD~-~S~npg~q~fEKmvSG~YL 338 (828)
.|.+|+.+...+..++- -.|.|.+|. |-.. ..--+||+.... .+..+....++++.+--|.
T Consensus 169 aNiT~l~~~~~~~~fDt--GPGN~liD~-~~~~-------~~~~~yD~~G~~A~~G~v~~~ll~~ll~~pyf 230 (364)
T PF03702_consen 169 ANITFLPPGGDVIGFDT--GPGNMLIDA-WIQR-------HTGLPYDKDGEWAASGKVNEELLDRLLSHPYF 230 (364)
T ss_dssp EEEEEE-TTS--EEEEE--EESSHHHHH-HHHH-------HCS-SS-GGGHHHHCS---HHHHHHHHTSHHH
T ss_pred eEEEEecCCCCceeecc--CcHHHHHHH-HHHH-------HhCCCcCcCcHhhCcCCCCHHHHHHHhcCccc
Confidence 77788764332222211 112233321 1100 011346665443 3556666666666665555
No 89
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=62.10 E-value=1.4e+02 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=36.6
Q ss_pred CCCcccccEEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCC-cccCCccchHHHHHHHHHHHHhh
Q psy4666 33 PQGTETGKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPE-IMTGPGEQLFDYIAESLENFVRE 97 (828)
Q Consensus 33 P~G~E~G~fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e-~~~g~~~~lFd~IA~~i~~fl~e 97 (828)
|.-+..+.+++||+|-|++|+...+ .++.+. .-..|.+ +..|.-.+ ++.....|..+++.
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~~~~----~~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ 79 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQPVA----GALEWADVVRDGIVVD-FIGAVTIVRRLKAT 79 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCCEEE----EEeccccccCCCEEee-HHHHHHHHHHHHHH
Confidence 4445566788999999999998877 554322 1222333 33332122 66677777777764
No 90
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=61.40 E-value=20 Score=41.51 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=35.3
Q ss_pred CcccccEEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC
Q psy4666 35 GTETGKFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101 (828)
Q Consensus 35 G~E~G~fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~ 101 (828)
+...|.|++||+|+|+.|+.++++++. ....|. |+. ..-+-+.+.+++++++.+..
T Consensus 140 ~~~~g~~lGIDiGSTttK~Vl~dd~~I---i~~~~~-~t~-------~~~~~a~~~l~~~l~~~Gl~ 195 (404)
T TIGR03286 140 ERQEGLTLGIDSGSTTTKAVVMEDNEV---IGTGWV-PTT-------KVIESAEEAVERALEEAGVS 195 (404)
T ss_pred hccCCEEEEEEcChhheeeEEEcCCeE---EEEEEe-ecc-------cHHHHHHHHHHHHHHHcCCC
Confidence 344567999999999999999885543 122222 321 11344666677777776654
No 91
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=60.73 E-value=39 Score=34.24 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=35.0
Q ss_pred EEEEEeCCceEEEEEEE-eC-ceeEEEEEEEecCCCcc-cCCccchHHHHHHHHHHHHhhc
Q psy4666 41 FLALDLGGTNFRVLMIY-AG-EKFRMEHKTYPISPEIM-TGPGEQLFDYIAESLENFVREQ 98 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G-~~~~~~~~~~~Ip~e~~-~g~~~~lFd~IA~~i~~fl~e~ 98 (828)
|.|||+|-|++++...+ .+ ..+++..... .|.+-+ .|.-. =.+-++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~-~~s~gi~~G~I~-d~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGE-VPSRGIRKGVIV-DIEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEE-ecCCCccCcEEE-CHHHHHHHHHHHHHHH
Confidence 47999999999999887 32 2345433332 255433 33222 2567777777777765
No 92
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=60.41 E-value=28 Score=42.08 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH 255 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~ 255 (828)
=.+.+.+|...-| ++ ++.++|+.+|++++.....
T Consensus 144 qR~a~~~Aa~~AG-l~--v~~li~EPtAAAlay~~~~ 177 (599)
T TIGR01991 144 QRQATKDAARLAG-LN--VLRLLNEPTAAAVAYGLDK 177 (599)
T ss_pred HHHHHHHHHHHcC-CC--ceEEecCHHHHHHHHhhcc
Confidence 4556777776555 54 6899999999999876543
No 93
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=57.16 E-value=35 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=35.3
Q ss_pred EEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccC
Q psy4666 42 LALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKA 100 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~ 100 (828)
++||.|||+.=+.+++ ++.. ....+.|+. ..++..=|.+.|...+.+.+.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~----~~~~K~~Tt-----~~d~~~gi~~al~~l~~~~~~ 52 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGV----VATAKVPTT-----PDDPAEGILEALDALLEESGI 52 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCE----EEEEEeCCC-----CcCHHHHHHHHHHhhhcccCC
Confidence 6899999999999998 4233 334455553 346777788888887776654
No 94
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=56.38 E-value=17 Score=42.85 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.1
Q ss_pred ccEEEEEeCCceEEEEEEE-eCceeEEEE----EEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCC-ccceEEE
Q psy4666 39 GKFLALDLGGTNFRVLMIY-AGEKFRMEH----KTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENE-HLPLGFT 110 (828)
Q Consensus 39 G~fLalDLGGTn~Rv~lV~-~G~~~~~~~----~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~-~l~LGft 110 (828)
...+|||-|.|+.|..+++ +|+.+-..+ +-||-|-=+.. ++.+++..+..++...+.+.++... --.+|+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEh-Dp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGIT 81 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEH-DPLEIWASVRSVLKEALAKAGIKPGEIAAIGIT 81 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCccceEEEEee
Confidence 3456999999999999999 887433222 33555544444 6789999999999999998876543 3456774
No 95
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=54.62 E-value=40 Score=36.88 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccce
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNAC 271 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNac 271 (828)
-.+.+.+++.+.| ++.+.++|..++++++......+..-++++.-|-+.+
T Consensus 115 ~r~~~~~~~e~~g---~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gtt 164 (335)
T PRK13930 115 ERRAVREAAEHAG---AREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTT 164 (335)
T ss_pred HHHHHHHHHHHcC---CCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeE
Confidence 4566777776544 5569999999999998755433332345555554443
No 96
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.62 E-value=28 Score=39.51 Aligned_cols=69 Identities=14% Similarity=0.362 Sum_probs=54.2
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEE-EEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEE
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHK-TYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGF 109 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~-~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGf 109 (828)
-++||+|-+.+|++-.+ .|+.++.+.- .-++|..++.+....=.+-+++.|+..+.+++...++...++
T Consensus 12 ~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AV 82 (354)
T COG4972 12 AVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAV 82 (354)
T ss_pred eeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhc
Confidence 57999999999999998 7776665433 457899998866666678999999999999988766544444
No 97
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=53.31 E-value=1.2e+02 Score=33.65 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCCcEEEEEEccc
Q psy4666 220 VELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTG 267 (828)
Q Consensus 220 v~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTG 267 (828)
.+.+.+++..- .++++.++|+.++++++.........-++++.-|
T Consensus 114 R~~l~~a~~~a---g~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG 158 (335)
T PRK13929 114 RRAISDAVKNC---GAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIG 158 (335)
T ss_pred HHHHHHHHHHc---CCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeC
Confidence 34455666544 4556899999999999865442233334444444
No 98
>KOG2517|consensus
Probab=50.65 E-value=58 Score=39.04 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=43.2
Q ss_pred cccEEEEEeCCceEEEEEEE--eCceeEEEEEEEe--c-CCCcccCCccchHHHHHHHHHHHHhhccC
Q psy4666 38 TGKFLALDLGGTNFRVLMIY--AGEKFRMEHKTYP--I-SPEIMTGPGEQLFDYIAESLENFVREQKA 100 (828)
Q Consensus 38 ~G~fLalDLGGTn~Rv~lV~--~G~~~~~~~~~~~--I-p~e~~~g~~~~lFd~IA~~i~~fl~e~~~ 100 (828)
..-+++||+|.|+.|+++++ +|+.....++... - .+....-++.++++.+-+||+...++-..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~ 72 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGV 72 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcc
Confidence 34578999999999999998 6764333222221 1 22233445789999999999987766544
No 99
>KOG0103|consensus
Probab=45.68 E-value=3.6e+02 Score=33.68 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhcc------cceeeecccch
Q psy4666 407 CIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALIS------HSVIVGTGFNA 480 (828)
Q Consensus 407 ~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p------~~~i~GtG~nA 480 (828)
.....++|.-+.+|.-.-+-.+|+- ......+.--|=+.||... -|...+++.+...+... ++.-.|+...+
T Consensus 302 ReEfEel~~plL~rv~~p~~~~l~d-~~l~~edi~~VEiVGg~sr-ipaike~Is~~Fgke~s~TlN~dEavarG~ALqc 379 (727)
T KOG0103|consen 302 REEFEELSAPLLERVEVPLLKALAD-AKLKVEDIHAVEIVGGLSR-IPAIKEMISDFFGKELSRTLNQDEAVARGAALQC 379 (727)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH-hcCccccceeEEEecCccc-chHHHHHHHHHhCCcccccccHHHHHHHhHHHHH
Confidence 4567788999999988877777765 2333333323334466544 46666666665544432 12223666667
Q ss_pred hhhhcccccccccccCCCCeEEEecCCCCCCCC
Q psy4666 481 CYVERTENVSTFENEANKPFVVINTEWGAFGDD 513 (828)
Q Consensus 481 Ayv~~~~~I~k~~~~~~~~~MiINtEWG~FGd~ 513 (828)
|+..+.=++.-|+-. +-..--|--.|-..|.+
T Consensus 380 AIlSP~frVRef~v~-Di~pysIs~~w~~~~ed 411 (727)
T KOG0103|consen 380 AILSPTFRVREFSVE-DIVPYSISLRWVKQGED 411 (727)
T ss_pred HhcCccccceeccee-cccceeEEEEecccccc
Confidence 777665444333221 11235577778777766
No 100
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=45.60 E-value=73 Score=35.63 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.0
Q ss_pred cEEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC
Q psy4666 40 KFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~ 101 (828)
.|++||+|-|+.|+.++++++. ...+-+|+. ...-+-..+.+++.+++.+..
T Consensus 33 ~~~GIDiGStt~K~Vlld~~~i----~~~~~~~tg------~~~~~~a~~~l~~~l~~~g~~ 84 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDGEL----YGYNSMRTG------NNSPDSAKNALQGIMDKIGMK 84 (293)
T ss_pred EEEEEEeCchhEEEEEEeCCEE----EEEEeecCC------CCHHHHHHHHHHHHHHHcCCc
Confidence 4789999999999999985543 223334443 233345666777777776653
No 101
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=45.02 E-value=45 Score=36.55 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=46.1
Q ss_pred EEEEechHHHHHh----cccCCCCcEEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCCccCCCCcccccccch
Q psy4666 238 VAILNDTAGCLVS----CAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEF 313 (828)
Q Consensus 238 vAVvNDTVaTLLa----eay~~~~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG~FG~~G~l~~~~T~f 313 (828)
|-+.||+.+-.+. +.+.+-...+-+-+|||+.--++..-++...+.|.+-.|- |=||.. .|--+.|.|
T Consensus 122 vFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSilkvtgpsqf~RvGGsslGGG----tlwGLl----sLlt~a~~y 193 (342)
T COG5146 122 VFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSILKVTGPSQFERVGGSSLGGG----TLWGLL----SLLTQATDY 193 (342)
T ss_pred HeeeeccccchhhhhhhhccccccceeeEeccCCeEEEEecCcchhccccccccCcc----hHHHHH----HHHcccccH
Confidence 4677887665443 3455557788999999999888876665555554222221 234432 233357889
Q ss_pred hhhhcc
Q psy4666 314 DRTIDD 319 (828)
Q Consensus 314 D~~iD~ 319 (828)
|..+|.
T Consensus 194 dqmld~ 199 (342)
T COG5146 194 DQMLDM 199 (342)
T ss_pred HHHHHH
Confidence 988774
No 102
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=44.97 E-value=1e+02 Score=37.43 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC
Q psy4666 219 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 254 (828)
Q Consensus 219 Vv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~ 254 (828)
=.+.+.+|...-| + +++.++|+.+|++++....
T Consensus 156 qR~a~~~Aa~~AG-l--~v~~li~EPtAAAlay~~~ 188 (595)
T PRK01433 156 ARGEVMLAAKIAG-F--EVLRLIAEPTAAAYAYGLN 188 (595)
T ss_pred HHHHHHHHHHHcC-C--CEEEEecCcHHHHHHHhcc
Confidence 4556677765444 4 5699999999999986544
No 103
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=43.90 E-value=2.8e+02 Score=29.63 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=29.0
Q ss_pred EEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHh
Q psy4666 43 ALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVR 96 (828)
Q Consensus 43 alDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~ 96 (828)
+||+|-|++|+...+ .++. .-.-+.|++-+....-.=|+-.+..+..+++
T Consensus 1 g~dig~~~ik~v~~~~~~~~----~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~ 51 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQP----VAGVMQFADVVRDGIVVDFLGAVEIVRRLKD 51 (239)
T ss_pred CCCcccceEEEEEEecCCCE----EEEEecccccccCCeEEEhHHHHHHHHHHHH
Confidence 589999999998877 4433 2234566665542222224444555554443
No 104
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=37.98 E-value=3.9e+02 Score=27.69 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.9
Q ss_pred EEEEEeCCceEEEEEEEeC
Q psy4666 41 FLALDLGGTNFRVLMIYAG 59 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G 59 (828)
+|.||+|=|++|++++++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999999744
No 105
>PRK13320 pantothenate kinase; Reviewed
Probab=37.58 E-value=64 Score=34.73 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.3
Q ss_pred cEEEEEeCCceEEEEEEEeCc
Q psy4666 40 KFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~~G~ 60 (828)
.+|+||+|-|+++.+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 379999999999999998554
No 106
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=36.69 E-value=28 Score=34.43 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=26.3
Q ss_pred HHHHHHhhhhHHHHhhc------ccccccccccccccccccCc
Q psy4666 725 TIREAFNRDLSMIRTQH------NKLKTYREVNIYPFLRVLTP 761 (828)
Q Consensus 725 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 761 (828)
++.+++|.||..+..-- |.--+|-..+|||.||.|+.
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~~n~~ls~DDi~lFp~LR~Lt~ 102 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEAVNGQLSTDDIILFPILRNLTL 102 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCccccCCcCCHHHHHHHHHHhhhhh
Confidence 45566777776665433 44457888999999999985
No 107
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=35.40 E-value=4.1e+02 Score=29.64 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=30.7
Q ss_pred EEEEEcCceeecchhHHHHHHHHHHhhccc-----ceee-------ecccchhhhhccc
Q psy4666 441 VTVGVDGSVYRYHPYFHHMMLEKIPALISH-----SVIV-------GTGFNACYVERTE 487 (828)
Q Consensus 441 ItVGvDGSVy~~~p~f~~~L~e~lreL~p~-----~~i~-------GtG~nAAyv~~~~ 487 (828)
|++. ||... .|.|.++|++.++.+.|. ..+. .+..||++++.+.
T Consensus 293 Ivl~--GG~s~-~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~ 348 (371)
T cd00012 293 IVLS--GGSTL-FPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLS 348 (371)
T ss_pred EEEe--CCccC-CcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCch
Confidence 5665 66655 589999999999998875 1221 5566777776653
No 108
>PF13041 PPR_2: PPR repeat family
Probab=33.61 E-value=37 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.6
Q ss_pred ecchhhhHHHHHHHhhccccccCchhHhHHHHHHhhc
Q psy4666 770 LAKLDKVKEILDIVLHQHSDLLRPNIQTFAAVLECLG 806 (828)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (828)
++|..++++.+++.-.-...-++||..||..++.++-
T Consensus 13 ~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 13 YCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566777777777777778889999999999998763
No 109
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.60 E-value=1e+02 Score=37.34 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCCcEEEEE--Ecccccceeecc
Q psy4666 220 VELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVI--VGTGFNACYVER 275 (828)
Q Consensus 220 v~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~~~IGLI--LGTGtNacYiE~ 275 (828)
.+.+.+|-..-| ++ ++.++|+.+|++++-.........-+| +|-||=-+=+.+
T Consensus 136 R~at~~A~~iaG-l~--vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 136 RQATKDAARIAG-LN--VLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred HHHHHHHHHHcC-CC--eEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEE
Confidence 556666665555 55 589999999999998777544444444 455554444443
No 110
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=32.81 E-value=31 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=32.6
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy4666 393 LYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSIVTVG 444 (828)
Q Consensus 393 l~~~lgl~~~s~ed~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~~~~ItVG 444 (828)
|...+|++ ..+-.-.....+|..+.+.+...++.++--+....+.+.++.|
T Consensus 234 lAr~lg~d-~~e~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dpv~~g 284 (318)
T TIGR03123 234 LARMVCAD-LEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKTVVAA 284 (318)
T ss_pred HHHHhCCC-hhHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEe
Confidence 44566664 1111123567788888888888888888777777666664443
No 111
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=32.03 E-value=4.7e+02 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=30.6
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHH
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAE 89 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~ 89 (828)
+|+||+|=|++.+++.++++. ...|.++++-.. +.++|+.++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~----~~~~r~~t~~~~-~~del~~~~~~ 45 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV----VQTWRLATEDLL-TEDELGLQLHN 45 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE----EEEEeecccccc-cHHHHHHHHHH
Confidence 789999999999999875554 456787776554 23445544444
No 112
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=32.02 E-value=77 Score=35.10 Aligned_cols=28 Identities=11% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCeEEEEEcCceeecchhHHHHHHHHHHhh
Q psy4666 438 FSIVTVGVDGSVYRYHPYFHHMMLEKIPAL 467 (828)
Q Consensus 438 ~~~ItVGvDGSVy~~~p~f~~~L~e~lreL 467 (828)
.++|... ||....+|..++.+..+++-.
T Consensus 231 ~~~IvF~--Gg~L~~~~~l~~~~~~~~~~~ 258 (279)
T TIGR00555 231 IDRIVFI--GSFLRNNQLLMKVLSYATNFW 258 (279)
T ss_pred CCeEEEE--CCcccCCHHHHHHHHHHHhhc
Confidence 3556665 999999999999998887644
No 113
>PRK13317 pantothenate kinase; Provisional
Probab=29.20 E-value=46 Score=36.58 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.9
Q ss_pred ccEEEEEeCCceEEEEEEE-eC
Q psy4666 39 GKFLALDLGGTNFRVLMIY-AG 59 (828)
Q Consensus 39 G~fLalDLGGTn~Rv~lV~-~G 59 (828)
+..++||+|||..|++.++ ++
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCC
Confidence 4578999999999999888 44
No 114
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=28.72 E-value=3.9e+02 Score=29.91 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccc
Q psy4666 233 FPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERT 276 (828)
Q Consensus 233 l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~ 276 (828)
+++.-+.+++++++++.+.... -|++|.-|-+.+.+.+.
T Consensus 121 ~~~~~v~~~~~~~~a~~~~g~~-----tglVVD~G~~~t~v~pV 159 (393)
T PF00022_consen 121 FGVPSVYFIPSPLLALYASGRT-----TGLVVDIGYSSTSVVPV 159 (393)
T ss_dssp S--SEEEEEEHHHHHHHHTTBS-----SEEEEEESSS-EEEEEE
T ss_pred cccceeeeeecccccccccccc-----cccccccceeeeeeeee
Confidence 5556689999999999887544 37888877777766543
No 115
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=27.73 E-value=99 Score=36.11 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=15.6
Q ss_pred EEEEeCCceEEEEEEE--eCce
Q psy4666 42 LALDLGGTNFRVLMIY--AGEK 61 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~--~G~~ 61 (828)
+|+|+|.|++...+++ .|+.
T Consensus 4 iAvDiGTTti~~~L~dl~~G~~ 25 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLETGEV 25 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT--E
T ss_pred EEEEcchhheeeEEEECCCCCE
Confidence 6999999999999999 6764
No 116
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=27.47 E-value=6.6e+02 Score=28.66 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=78.4
Q ss_pred HHHHhcccCCCCcEEEEEEcccccceeeccccccccCCCCCCCCcEEEecCCCccCCCCcccccccchhhhhcccCCCcc
Q psy4666 246 GCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRG 325 (828)
Q Consensus 246 aTLLaeay~~~~~~IGLILGTGtNacYiE~~~~i~kl~gage~G~MiINtEwG~FG~~G~l~~~~T~fD~~iD~~S~npg 325 (828)
+..++-.|..- +.|-.=+|.|+..|-.-+++.|..-+... .-|.|+.. ++-.-|-
T Consensus 167 A~e~gk~yee~-n~vVaHmGggiSV~ah~~GrvIDvnnald---------geGPfspe---------------rsG~lP~ 221 (358)
T COG3426 167 AKEVGKRYEEM-NIVVAHMGGGISVGAHKQGRVIDVNNALD---------GEGPFSPE---------------RSGTLPT 221 (358)
T ss_pred HHHhccchhhh-eEEEEeccCceEEEEecCCcEEeccCCCC---------CCCCCCcc---------------cCCCCCh
Confidence 34445555443 33444578888888777776554322211 11444421 1223455
Q ss_pred hhHHHHhhccccHHHHHHHHHHHHhhcCcccCCCCCccccccCccChhHHHHhhhcCCCChHHHHHHHHHhhCCCCCCHH
Q psy4666 326 QQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQ 405 (828)
Q Consensus 326 ~q~fEKmvSG~YLGELvRliLl~l~~~glLF~g~~~~~L~~~~sfdT~~ls~Ie~~~~~~~~~~~~il~~~lgl~~~s~e 405 (828)
-+..+-.-||.|-- +.++..+...|-++.- +-|.++.+++ +
T Consensus 222 ~dlv~lcfSgk~t~---~El~k~i~g~gG~~ay-----------lGT~d~~~v~-------------------------~ 262 (358)
T COG3426 222 GDLVRLCFSGKYTE---EELLKKITGKGGLVAY-----------LGTNDAKEVE-------------------------R 262 (358)
T ss_pred HHHHHHHhcCcccH---HHHHHHhhcCCceEEE-----------eccchHHHHH-------------------------H
Confidence 56677777888863 3444444444443310 2233333332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCeEEEEEcCceeecchhHHHHHHHHHHhhcc
Q psy4666 406 DCIDVRYLCRVVSQRSAHLASAGIATLLNRMD--FSIVTVGVDGSVYRYHPYFHHMMLEKIPALIS 469 (828)
Q Consensus 406 d~~~vr~Ic~aV~~RAA~LlAAgLAAIl~~l~--~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~p 469 (828)
..+.+++.|..+.+--|+=+|-.|.+....+. ++.|++- ||+ .+...|.+++.+.+.-..|
T Consensus 263 ~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLT--GGi-A~~~~f~~~I~~~v~~iap 325 (358)
T COG3426 263 RIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLT--GGI-AYEKLFVDAIEDRVSWIAP 325 (358)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEe--cch-hhHHHHHHHHHHHHhhhcc
Confidence 22333344444444444444434433333343 3445554 886 3457788888888876655
No 117
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=27.32 E-value=54 Score=36.06 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=17.4
Q ss_pred cEEEEEeCCceEEEEEEEeCc
Q psy4666 40 KFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~~G~ 60 (828)
+.|.+|+|||++-++++.+|+
T Consensus 78 ~~i~vDmGGTTtDi~~i~~G~ 98 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKDGR 98 (290)
T ss_dssp SEEEEEE-SS-EEEEEEETTE
T ss_pred CEEEEeCCCCEEEEEEEECCe
Confidence 589999999999999999885
No 118
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=26.99 E-value=48 Score=37.34 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred cccEEEEEeCCceEEEEEEEeCc
Q psy4666 38 TGKFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 38 ~G~fLalDLGGTn~Rv~lV~~G~ 60 (828)
.++.|.+|+|||++.+.+|.+|+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~ 149 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGE 149 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCE
Confidence 55689999999999999999885
No 119
>KOG0104|consensus
Probab=26.91 E-value=1e+02 Score=38.69 Aligned_cols=200 Identities=18% Similarity=0.207 Sum_probs=97.9
Q ss_pred EEEEEeCCceEEEEEEEeCceeEEE---EEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC-CCccceEEEEecccc
Q psy4666 41 FLALDLGGTNFRVLMIYAGEKFRME---HKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE-NEHLPLGFTFSFPVD 116 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~~G~~~~~~---~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~-~~~l~LGftFSFPv~ 116 (828)
.++||+|.-++++++|+-|-..++- ..+.+-|.-++--.++.+|.--|..+.----.+-.. -..+ ||=++-=|.
T Consensus 24 vmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~l-lgk~~~~~~- 101 (902)
T KOG0104|consen 24 VMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDL-LGKSLDDPT- 101 (902)
T ss_pred heeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHH-hCcccCCcH-
Confidence 5899999999999999976422221 112233433333346778877666553211000000 0011 232222221
Q ss_pred ccccchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhcccccccccCccc
Q psy4666 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTT 196 (828)
Q Consensus 117 q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 196 (828)
|-||. .---||++...| +.+.+ +|++++-..-||-++|-..|..--.+ +++
T Consensus 102 --------v~ly~---~~~p~~e~v~d~-----~rstV-----~F~i~d~~~ysvEellAMil~~a~~~--------ae~ 152 (902)
T KOG0104|consen 102 --------VDLYQ---KRFPFFELVEDP-----QRSTV-----VFKISDQEEYSVEELLAMILQYAKSL--------AEE 152 (902)
T ss_pred --------HHHHH---hcCCceeecccC-----ccceE-----EEEeCCccccCHHHHHHHHHHHHHHH--------HHH
Confidence 11222 011111222222 22344 67776655677777777665430000 000
Q ss_pred cccceeecccc-CcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccC-------CCCcEEEEEEcccc
Q psy4666 197 ISKCVLVRWTK-GFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD-------HKHCKIGVIVGTGF 268 (828)
Q Consensus 197 i~~~~n~~WtK-gf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~-------~~~~~IGLILGTGt 268 (828)
-...+ -++ -+.+++-.|+.=...|-+|-. -..++|..++||-+|+++.-.-. .+...|--=.|.|.
T Consensus 153 ~a~~~---Ikd~ViTVP~~F~qaeR~all~Aa~---iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~s 226 (902)
T KOG0104|consen 153 YAKQP---IKDMVITVPPFFNQAERRALLQAAQ---IAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGS 226 (902)
T ss_pred HHhcc---hhheEEeCCcccCHHHHHHHHHHHH---hcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCc
Confidence 00000 000 123444445554444444431 14567899999999999987443 34556666667777
Q ss_pred cceeecccc
Q psy4666 269 NACYVERTE 277 (828)
Q Consensus 269 NacYiE~~~ 277 (828)
-.|-|....
T Consensus 227 T~Ativsy~ 235 (902)
T KOG0104|consen 227 TSATIVSYQ 235 (902)
T ss_pred eeEEEEEEE
Confidence 667666554
No 120
>PTZ00452 actin; Provisional
Probab=25.85 E-value=6.7e+02 Score=28.56 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred EEEEeCCceEEEEEEE--eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCCCCccceEEEEeccccccc
Q psy4666 42 LALDLGGTNFRVLMIY--AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDMMS 119 (828)
Q Consensus 42 LalDLGGTn~Rv~lV~--~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~~~~l~LGftFSFPv~q~~ 119 (828)
++||+|..++|++.-. .-..+--..-..+-....+.+.... .-++.+........ +.+.+|+ +.
T Consensus 8 vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~---------~~~iG~~~~~~~~~---~~l~~Pi-~~- 73 (375)
T PTZ00452 8 VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNK---------EYYVGEEAQAKRGV---LAIKEPI-QN- 73 (375)
T ss_pred EEEECCCCeEEEeeCCCCCcCEEecceeEEECCcccccccccc---------ceEEChhhhccccC---cEEcccC-cC-
Q ss_pred cchhhhhhhhccccccccccccCCCcccccCCeEEEeccccceecccccchHHHHHHHHHHHhhccc---ccccccCccc
Q psy4666 120 LTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGIS---NVLLCSSSTT 196 (828)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~kGf~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 196 (828)
|.+++|. .+..+++.+|.++++.. .+++++...
T Consensus 74 --------------------------------G~I~dwd-----------~~e~iw~~~f~~~l~v~p~~~pvlitE~~- 109 (375)
T PTZ00452 74 --------------------------------GIINSWD-----------DIEIIWHHAFYNELCMSPEDQPVFMTDAP- 109 (375)
T ss_pred --------------------------------CEEcCHH-----------HHHHHHHHHHHhhcCCCcccCceeeecCC-
Q ss_pred cccceeeccccCcccCCCcCccHHHHHHHHHHhcCCCCccEEEEEechHHHHHhcccCCCCcEEEEEEcccccceeeccc
Q psy4666 197 ISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERT 276 (828)
Q Consensus 197 i~~~~n~~WtKgf~~~~v~G~DVv~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~~~~~~IGLILGTGtNacYiE~~ 276 (828)
-+++. ..+.+-+.+=.. +++.-+.+.++++.++.+..... |++|.-|-+.+.+.+.
T Consensus 110 -------~~~~~----------~Re~l~eilFE~--~~vp~~~~~~~~~lslya~g~~t-----glVVDiG~~~t~v~PV 165 (375)
T PTZ00452 110 -------MNSKF----------NRERMTQIMFET--FNTPCLYISNEAVLSLYTSGKTI-----GLVVDSGEGVTHCVPV 165 (375)
T ss_pred -------CCCHH----------HHHHHHHHHhhc--cCCceEEEechHHHHHHHCCCce-----eeeecCCCCcceEEEE
No 121
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=24.89 E-value=1.9e+02 Score=33.71 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=32.8
Q ss_pred cccEEEEEeCCceEEEEEEEeCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC
Q psy4666 38 TGKFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101 (828)
Q Consensus 38 ~G~fLalDLGGTn~Rv~lV~~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~ 101 (828)
-+.||+||.|-|+.|+.++++++. + ...|-.++. +... -.+.+++.+++-+.+
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d~~~--I-~~~~~~~t~-----g~p~---~~~~l~~~le~l~~~ 186 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMEDGKE--I-LYGFYVSTK-----GRPI---AEKALKEALEELGEK 186 (396)
T ss_pred CcEEEEEecCCcceeEEEEeCCCe--E-EEEEEEcCC-----CChh---HHHHHHHHHHHcccC
Confidence 457899999999999999996542 1 223333332 1122 355666666665544
No 122
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=24.73 E-value=84 Score=31.78 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=37.5
Q ss_pred HHHHHHhhcCCCeEEEEEcCce-eecchhHHHHHHHHHHhhc--ccceeeecccchhhhhc
Q psy4666 428 GIATLLNRMDFSIVTVGVDGSV-YRYHPYFHHMMLEKIPALI--SHSVIVGTGFNACYVER 485 (828)
Q Consensus 428 gLAAIl~~l~~~~ItVGvDGSV-y~~~p~f~~~L~e~lreL~--p~~~i~GtG~nAAyv~~ 485 (828)
.|..-+...+.+.+.+|.+..- ...||.|...+-+.+.+-- ..+.|+|||.|.++.+.
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 3444455556666667643211 2467888888877775432 25677899999999874
No 123
>KOG4422|consensus
Probab=24.00 E-value=38 Score=39.82 Aligned_cols=20 Identities=40% Similarity=0.772 Sum_probs=17.3
Q ss_pred ccccCchhHhHHHHHHhhcc
Q psy4666 788 SDLLRPNIQTFAAVLECLGR 807 (828)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~ 807 (828)
+--++||++||.|+|.|+.+
T Consensus 266 sqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HhhcCCchHhHHHHHHHHHH
Confidence 44689999999999999865
No 124
>PRK13331 pantothenate kinase; Reviewed
Probab=23.91 E-value=2.5e+02 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.6
Q ss_pred ccEEEEEeCCceEEEEEEEeCc
Q psy4666 39 GKFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 39 G~fLalDLGGTn~Rv~lV~~G~ 60 (828)
-++|+||+|=||+++++.++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 3589999999999999998443
No 125
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.75 E-value=92 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc--ccceeeecccchhhhhc
Q psy4666 427 AGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI--SHSVIVGTGFNACYVER 485 (828)
Q Consensus 427 AgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~--p~~~i~GtG~nAAyv~~ 485 (828)
..|..-+...+.+.+.+|....=.-.||.|...+-+.+.+-- -.+.|+|||.|.++.+.
T Consensus 15 ~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 75 (143)
T TIGR01120 15 EEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAAN 75 (143)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHh
Confidence 344444555666667777533223468888888877775432 14677899999999874
No 126
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=23.58 E-value=1.8e+02 Score=31.39 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.2
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4666 699 VLNETLLAYTDACRKIFEETKDQWRRTIREA 729 (828)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (828)
-|-|.-+.|-..|.++|++++.+|.+.|++|
T Consensus 193 ~fveAQl~Yh~qa~eiL~~l~~~l~~~~~~a 223 (223)
T cd07613 193 ALVQAQLEYHKQATQILQQVTVKLEDRIREA 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456778999999999999999999999875
No 127
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=23.43 E-value=1.1e+03 Score=27.70 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhh
Q psy4666 416 VVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPAL 467 (828)
Q Consensus 416 aV~~RAA~LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL 467 (828)
+.+.|.++..|+-.+++--. -+.++.. ||+-++.+.+++++.+.+.-+
T Consensus 304 ~f~yri~k~Iga~~a~L~g~--vDaiVfT--GGIgE~s~~lr~~I~~~l~~l 351 (402)
T PRK00180 304 VFVYRLAKYIGSYAAALNGR--LDAIVFT--AGIGENSALVREKVLEGLEFL 351 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCEEEEc--CccccCCHHHHHHHHhhhhhc
Confidence 33455555555544443222 2345554 999999999999988877544
No 128
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=23.39 E-value=94 Score=31.32 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc--ccceeeecccchhhhhc
Q psy4666 424 LASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI--SHSVIVGTGFNACYVER 485 (828)
Q Consensus 424 LlAAgLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~--p~~~i~GtG~nAAyv~~ 485 (828)
-+-..|..-+...+.+.+.+|....=.-.||.|...+-+.+.+-- -.+.|+|||.|+++.+.
T Consensus 11 ~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 74 (144)
T TIGR00689 11 ELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAAN 74 (144)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHh
Confidence 333445555666666666776532222357888888877774432 14677899999999874
No 129
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=23.23 E-value=3.1e+02 Score=30.63 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=31.5
Q ss_pred EEEEEcCceeecchhHHHHHHHHHHhhccc---ceee-------ecccchhhhhccc
Q psy4666 441 VTVGVDGSVYRYHPYFHHMMLEKIPALISH---SVIV-------GTGFNACYVERTE 487 (828)
Q Consensus 441 ItVGvDGSVy~~~p~f~~~L~e~lreL~p~---~~i~-------GtG~nAAyv~~~~ 487 (828)
|++. ||... .|.|.++|+..++++.|. +.+. .+..||++++.+.
T Consensus 295 Ivlt--GG~s~-i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~ 348 (373)
T smart00268 295 IVLS--GGSTL-IPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLS 348 (373)
T ss_pred eEee--ccccc-CcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCcc
Confidence 5555 77655 699999999999999872 2332 6677777776654
No 130
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.93 E-value=3.7e+02 Score=29.68 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=34.6
Q ss_pred EEEEEeCCceEEEEEEE-eCceeEEEEEEEecCCCcccCCccchHHHHHHHHHHHHhhccCC
Q psy4666 41 FLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101 (828)
Q Consensus 41 fLalDLGGTn~Rv~lV~-~G~~~~~~~~~~~Ip~e~~~g~~~~lFd~IA~~i~~fl~e~~~~ 101 (828)
|++||+|-|+.|+.+++ +|+.... ......|.. +.+..+-..+.+++++++.+..
T Consensus 3 ~~GIDiGStttK~Vlid~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~ 58 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGDKEEC-LAKRNDRIR-----QRDPFKLAEDAYDDLLEEAGLA 58 (262)
T ss_pred EEEEEcCcccEEEEEEecCCCeeEE-EEEEEecCC-----CCCHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999 5543222 111222221 2234455677778888777754
No 131
>KOG3132|consensus
Probab=22.66 E-value=21 Score=38.84 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=22.1
Q ss_pred ccccCcccc---ccceeeccccCcccCCCcCccH
Q psy4666 189 LLCSSSTTI---SKCVLVRWTKGFKCEGVVGANV 219 (828)
Q Consensus 189 ~~~~~~~~i---~~~~n~~WtKgf~~~~v~G~DV 219 (828)
|+|-|-+++ ...|.++|-|-+-.+++.|.+|
T Consensus 256 LLFYhks~~yqpgqsplvgwlkp~ml~eil~v~v 289 (325)
T KOG3132|consen 256 LLFYHKSVVYQPGQSPLVGWLKPWMLPEILNVPV 289 (325)
T ss_pred EEEeecceeeCCCCCccccccchhhhHHHhCCCC
Confidence 568887777 4668899988876666555544
No 132
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=22.51 E-value=1e+02 Score=36.20 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=18.6
Q ss_pred cEEEEEeCCceEEEEEEE-eCce
Q psy4666 40 KFLALDLGGTNFRVLMIY-AGEK 61 (828)
Q Consensus 40 ~fLalDLGGTn~Rv~lV~-~G~~ 61 (828)
.|++||+|+|+.|+.+++ +++.
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g~I 25 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKGEV 25 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCCcE
Confidence 478999999999999998 4444
No 133
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.91 E-value=70 Score=39.60 Aligned_cols=26 Identities=38% Similarity=0.730 Sum_probs=21.5
Q ss_pred CcccccEEEEEeCCceEEEEEEEeCc
Q psy4666 35 GTETGKFLALDLGGTNFRVLMIYAGE 60 (828)
Q Consensus 35 G~E~G~fLalDLGGTn~Rv~lV~~G~ 60 (828)
|...|+.+++|+|||+..++++.+|+
T Consensus 274 g~~~g~~i~~DmGGTStDva~i~~G~ 299 (674)
T COG0145 274 GLKAGNAIVFDMGGTSTDVALIIDGE 299 (674)
T ss_pred ccccCCEEEEEcCCcceeeeeeecCc
Confidence 44445688999999999999998775
No 134
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=21.65 E-value=1e+02 Score=34.80 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCccEEEEEechHHHHHhcccC--CCCcEEEEEEccccc
Q psy4666 221 ELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD--HKHCKIGVIVGTGFN 269 (828)
Q Consensus 221 ~LLqeAL~rrg~l~V~vvAVvNDTVaTLLaeay~--~~~~~IGLILGTGtN 269 (828)
..+.+++..- ..+-|.++-...++++|.... .+...+-+=+|-||-
T Consensus 110 rA~~~a~~~a---Ga~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtT 157 (326)
T PF06723_consen 110 RALIDAARQA---GARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTT 157 (326)
T ss_dssp HHHHHHHHHT---T-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-E
T ss_pred HHHHHHHHHc---CCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeE
Confidence 3455555433 345689999999999998553 344444445555543
No 135
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=20.43 E-value=1.2e+02 Score=31.56 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHhhcCCCeEEEEEcCceeecchhHHHHHHHHHHhhc--ccceeeecccchhhhhc
Q psy4666 428 GIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI--SHSVIVGTGFNACYVER 485 (828)
Q Consensus 428 gLAAIl~~l~~~~ItVGvDGSVy~~~p~f~~~L~e~lreL~--p~~~i~GtG~nAAyv~~ 485 (828)
.|..-+...+-+.+.+|.+..-.-.||.|...+-+++.+-- ..+.|+|||.|.++.+.
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaAN 76 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVN 76 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 34444555565666676533222358888888888775432 24677899999999874
Done!