RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4666
(828 letters)
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 248 bits (634), Expect = 1e-73
Identities = 130/456 (28%), Positives = 193/456 (42%), Gaps = 110/456 (24%)
Query: 21 TVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEKFRME--HKTYPISPEIMTG 78
+ K + + +LP G E G + A+D GGTNFR + + +ME + + + G
Sbjct: 56 SFKMLDSCVYNLPTGKEKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLG 115
Query: 79 P---------GEQLFDYIAESLENFVREQKAE---NEHLPLGFTFSFPVDMMSLTKVRVL 126
LFD+IA+S++ + E N+ +P+GFTFSFP +S+
Sbjct: 116 EKGLLDKKATATDLFDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNN---- 171
Query: 127 LFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGIS 186
+L+ WTKGF+
Sbjct: 172 -------------------------AILIDWTKGFE------------------------ 182
Query: 187 NVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAG 246
T + V G +V ELL A +R+N P NVVA+LNDT G
Sbjct: 183 -------------------TGRATNDPVEGKDVGELLNDAF-KRNNVPANVVAVLNDTVG 222
Query: 247 CLVSCAYD----HKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGD 302
L+SCAY C++GVI+GTG NACY E VS + IN E G F
Sbjct: 223 TLISCAYQKPKNTPPCQVGVIIGTGSNACYFE--PEVSAYGYAG----TPINMECGNFDS 276
Query: 303 DGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSH 362
+T +D +D + NRG+Q +EKM+SG Y+GEI R ++ + K
Sbjct: 277 ----KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRLIVHLLQL------KAPP 326
Query: 363 QLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSA 422
++ G F++ S I D+ R V+ + T +D +R +C +V R+A
Sbjct: 327 KMWQSGSFESEDASMILNDQSPDLQFSRQVI-KEAWDVDLTDEDLYTIRKICELVRGRAA 385
Query: 423 HLASAGIATLLNRMDF--SIVTVGVDGSVYRYHPYF 456
LA+A IA + TV +DGSVY +P+F
Sbjct: 386 QLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWF 421
Score = 95.5 bits (238), Expect = 1e-20
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 531
VI+GTG NACY E VS + IN E G F +T +D +D +
Sbjct: 242 VIIGTGSNACYFE--PEVSAYGYAG----TPINMECGNFDSK----LPITPYDLEMDWYT 291
Query: 532 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAA 591
NRG+Q +EKM+SG Y+GEI R ++ + K ++ G F++ S I
Sbjct: 292 PNRGRQQFEKMISGAYLGEISRRLIVHLLQL------KAPPKMWQSGSFESEDASMI--- 342
Query: 592 DVVNDNSSQLIETQ 605
+ND S L ++
Sbjct: 343 --LNDQSPDLQFSR 354
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 235 bits (600), Expect = 1e-68
Identities = 154/486 (31%), Positives = 220/486 (45%), Gaps = 105/486 (21%)
Query: 4 LNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEK-- 61
+ AD+ GL D +K +++ LP G E G F ALDLGGTNFRVL + G K
Sbjct: 62 MAADMRAGLAVD--GGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDE 119
Query: 62 --FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLP------LGFTFSF 113
E + I E+M G E+LFD+IA L NFV ++ + HLP +GFTFSF
Sbjct: 120 RVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKF-HLPEGRKREIGFTFSF 178
Query: 114 PVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVE 173
PV S+ G+L++WTKGF G G +VV
Sbjct: 179 PVKQTSI-----------------------------DSGILMKWTKGFAVSGTAGKDVVA 209
Query: 174 LLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNF 233
L +A+ R Q L R
Sbjct: 210 CLNEAMER-------------------------------------------QGLDMR--- 223
Query: 234 PVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENE-ANKPFVV 292
V A++NDT G L Y + VI+GTG NACYVERT+ + + + ++ +
Sbjct: 224 ---VSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTI 280
Query: 293 INTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEE 352
INTEWGAF D LTEFDR +D S+N G+QI+EK +SGMY+GEIVR ++ K E
Sbjct: 281 INTEWGAFSD----GLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAET 336
Query: 353 GILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRY 412
LF +LST T ++ ++ + D+ ++LY L + + + V
Sbjct: 337 SDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGSILYDVLGVEASLSARRRVVE- 395
Query: 413 LCRVVSQRSAHLASAGIATLLNRMD-------FSIVT-VGVDGSVYRYHPYFHHMMLEKI 464
+C + +R LA AGI +L +M+ F T V +DG +Y +P + M + +
Sbjct: 396 VCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAV 455
Query: 465 PALISH 470
L+
Sbjct: 456 TELLGL 461
Score = 112 bits (282), Expect = 4e-26
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 471 SVIVGTGFNACYVERTENVSTFENE-ANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDD 529
+VI+GTG NACYVERT+ + + + ++ +INTEWGAF D LTEFDR +D
Sbjct: 248 AVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFSDG----LPLTEFDREMDA 303
Query: 530 RSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIE 589
S+N G+QI+EK +SGMY+GEIVR ++ K E LF +LST T ++ ++
Sbjct: 304 ASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQ 363
Query: 590 AADVVNDNSSQL 601
DNS L
Sbjct: 364 Q-----DNSDDL 370
>gnl|CDD|202746 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam00349. Some members of the family
have two copies of each of these domains.
Length = 238
Score = 222 bits (569), Expect = 3e-67
Identities = 91/210 (43%), Positives = 131/210 (62%), Gaps = 11/210 (5%)
Query: 257 HCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRT 316
C+IG+IVGTG NACY+E N+ E + + + IN EWGAF D+G LD T++D
Sbjct: 1 ECEIGLIVGTGTNACYMEEMRNIEKLEGDDGR--MCINMEWGAF-DNGHLDLPRTKYDVV 57
Query: 317 IDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIS 376
ID+ S N GQQ +EKM+SGMY+GEIVRL++ ++G+LF G+ S +L T G F+T +S
Sbjct: 58 IDEESPNPGQQRFEKMISGMYLGEIVRLILLDLAKQGLLFKGQDSPKLLTPGSFETSVLS 117
Query: 377 TIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM 436
IE +D ++ R +L L L T ++ VR +C VS R+A L +AG+A +L ++
Sbjct: 118 RIE-SDSENLEDVRAILQTALGLE-TTDEERKLVRRVCEAVSTRAARLCAAGLAAILQKI 175
Query: 437 ------DFSIVTVGVDGSVYRYHPYFHHMM 460
+ VTVGVDGSVY+ +P F +
Sbjct: 176 RENRGYEHLKVTVGVDGSVYKLYPGFKERL 205
Score = 148 bits (375), Expect = 3e-40
Identities = 58/118 (49%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 531
+IVGTG NACY+E N+ E + + + IN EWGAF D+G LD T++D ID+ S
Sbjct: 6 LIVGTGTNACYMEEMRNIEKLEGDDGR--MCINMEWGAF-DNGHLDLPRTKYDVVIDEES 62
Query: 532 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIE 589
N GQQ +EKM+SGMY+GEIVRL++ ++G+LF G+ S +L T G F+T +S IE
Sbjct: 63 PNPGQQRFEKMISGMYLGEIVRLILLDLAKQGLLFKGQDSPKLLTPGSFETSVLSRIE 120
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 221 bits (566), Expect = 5e-64
Identities = 135/452 (29%), Positives = 204/452 (45%), Gaps = 88/452 (19%)
Query: 26 PTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE--KFRMEHKTYPISPEIMTGPG-EQ 82
PT++ LP G E+G LA+DLGGTN RV ++ G F +E + E ++
Sbjct: 62 PTWVAPLPTGNESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSFLPVECRDSESRDE 121
Query: 83 LFDYIAESLENFVREQKAENE--HLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTY 140
LF +IA+ L F++EQ LP+GFTFS+P++ S+ +
Sbjct: 122 LFGFIADRLAAFIKEQHPSGYGSKLPIGFTFSYPLNQTSINE------------------ 163
Query: 141 TDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKC 200
G L+RWTKGF V+G +VV LLQ+AL R
Sbjct: 164 -----------GQLIRWTKGFDIPEVIGTDVVRLLQEALSAR------------------ 194
Query: 201 VLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKI 260
N P+ VVA++NDT G L++ Y I
Sbjct: 195 -------------------------------NLPIRVVAVINDTTGTLLASVYTSSETII 223
Query: 261 GVIVGTGFNACYVERTENVSTFENEANKPF--VVINTEWGAFGDDGALDFLLTEFDRTID 318
G+I GTG N CY E + + ++IN EWG+F D+ T++D ID
Sbjct: 224 GIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSF-DNELSVLPRTKYDVLID 282
Query: 319 DRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTI 378
S N G QI+EKM SGMY+GE++RL++ E+G++FNG+ +L+ T +S I
Sbjct: 283 QESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRI 342
Query: 379 EAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATL-LNRMD 437
E ++ + T ++ +R L ++ +R+A LA+ IA + +
Sbjct: 343 EEDPFENLR-NTLTTFLNDFRAPTTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGA 401
Query: 438 FSIVTVGVDGSVYRYHPYFHHMMLEKIPALIS 469
+ VG DGSV +P F M+ E + AL+
Sbjct: 402 YKAYHVGADGSVIERYPGFRSMLREALKALLG 433
Score = 88.6 bits (220), Expect = 2e-18
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPF--VVINTEWGAFGDDGALDFLLTEFDRTID 528
+I GTG N CY E + + ++IN EWG+F D+ T++D ID
Sbjct: 224 GIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSF-DNELSVLPRTKYDVLID 282
Query: 529 DRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTI 588
S N G QI+EKM SGMY+GE++RL++ E+G++FNG+ +L+ T +S I
Sbjct: 283 QESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRI 342
Query: 589 EAADVVNDNSSQLIETQIRTLKS 611
E D L T L
Sbjct: 343 EE-----DPFENLRNTLTTFLND 360
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 217 bits (553), Expect = 6e-62
Identities = 144/470 (30%), Positives = 210/470 (44%), Gaps = 101/470 (21%)
Query: 22 VKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEK----FRMEHKTYPISPEIMT 77
+K +++ +LP G E G F ALDLGGTNFRVL + G K + E + I P +MT
Sbjct: 78 LKMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMT 137
Query: 78 GPGEQLFDYIAESLENFVREQKAENEHLP------LGFTFSFPVDMMSLTKVRVLLFRNV 131
G + LFD+IA +L FV + E+ HLP LGFTFSFPV S+
Sbjct: 138 GSSDALFDFIAAALAKFV-ATEGEDFHLPPGRQRELGFTFSFPVKQTSI----------- 185
Query: 132 SANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLC 191
S G L++WTKGF + VG +VV L +A+ R
Sbjct: 186 ------------------SSGTLIKWTKGFSIDDAVGQDVVGELTKAMER---------- 217
Query: 192 SSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSC 251
VG + + V A++NDT G L
Sbjct: 218 -----------------------VGLD----------------MRVSALVNDTIGTLAGG 238
Query: 252 AYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPF-VVINTEWGAFGDDGALDFLL 310
Y + VI+GTG NA YVER + + + K +VIN EWG F L
Sbjct: 239 RYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSS---HLPL 295
Query: 311 TEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIF 370
TE+D +D SLN G+QI+EK++SGMY+GEI+R ++ K EE F +L I
Sbjct: 296 TEYDHALDVESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFIL 355
Query: 371 DTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIA 430
T +S + D+ + + L L +P+ + + V LC +V+ R A L++AGI
Sbjct: 356 RTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIY 415
Query: 431 TLLNRMDFSIV--------TVGVDGSVYRYHPYFHHMMLEKIPALISHSV 472
+L ++ V + +DG ++ ++ F M + L+ V
Sbjct: 416 GILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEV 465
Score = 93.4 bits (232), Expect = 7e-20
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPF-VVINTEWGAFGDDGALDFLLTEFDRTIDD 529
+VI+GTG NA YVER + + + K +VIN EWG F LTE+D +D
Sbjct: 248 AVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSS---HLPLTEYDHALDV 304
Query: 530 RSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIE 589
SLN G+QI+EK++SGMY+GEI+R ++ K EE F +L I T +S +
Sbjct: 305 ESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMH 364
Query: 590 AADVVNDNSSQLI 602
+D S L
Sbjct: 365 -----HDTSPDLK 372
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 205 bits (524), Expect = 8e-58
Identities = 134/437 (30%), Positives = 197/437 (45%), Gaps = 99/437 (22%)
Query: 22 VKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEK----FRMEHKTYPISPEIMT 77
+K TF+ DLP G+E G + ALDLGGTNFRVL + G + + + +PI +M
Sbjct: 78 LKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMN 137
Query: 78 GPGEQLFDYIAESLENFVREQKAENEHLP-----LGFTFSFPVDMMSLTKVRVLLFRNVS 132
E LFD+IA SL+ FV +++ +E LGFTFSFPV S+
Sbjct: 138 STSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSI------------ 185
Query: 133 ANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCS 192
S G+L++WTKGF +VG +V E LQ AL RR
Sbjct: 186 -----------------SSGILIKWTKGFAISDMVGKDVAECLQGALNRR---------- 218
Query: 193 SSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCA 252
+ V A++NDT G L
Sbjct: 219 ---------------------------------------GLDMRVAALVNDTVGTLALGH 239
Query: 253 YDHKHCKIGVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLT 311
Y VI+GTG NACY+ERT+ + + +V+N EWG F T
Sbjct: 240 YHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSS---HLPRT 296
Query: 312 EFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFD 371
+D +D S N Q +EKM+SGMY+G+IVR ++ + ++E +F G S +LST +
Sbjct: 297 SYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIF-GPVSSRLSTPFVLR 355
Query: 372 TMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIAT 431
T ++ + D ++ +L + L + + V +C VV++R+A LA+AGI
Sbjct: 356 TPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVG 415
Query: 432 LLNRMDFSIVTVGVDGS 448
+L + +G DGS
Sbjct: 416 ILKK-------IGRDGS 425
Score = 79.2 bits (195), Expect = 3e-15
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 471 SVIVGTGFNACYVERTENVSTFEN-EANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDD 529
+VI+GTG NACY+ERT+ + + +V+N EWG F T +D +D
Sbjct: 248 AVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSS---HLPRTSYDIDLDA 304
Query: 530 RSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIE 589
S N Q +EKM+SGMY+G+IVR ++ + ++E +F G S +LST + T ++ +
Sbjct: 305 ESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIF-GPVSSRLSTPFVLRTPSVAAMH 363
Query: 590 AADVVNDNSSQLIETQIRTLK 610
D+S +L E R LK
Sbjct: 364 E-----DDSPELQEVA-RILK 378
>gnl|CDD|201171 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam03727. Some members of the family
have two copies of each of these domains.
Length = 205
Score = 184 bits (469), Expect = 1e-53
Identities = 93/258 (36%), Positives = 124/258 (48%), Gaps = 81/258 (31%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMI--YA 58
+ R ++++KGL K+ A V PTF++ P GTE G FLALDLGGTNFRVL++
Sbjct: 24 VKRFISEMEKGLSKEGGNLAAVPMLPTFVRSTPTGTEKGDFLALDLGGTNFRVLLVKLTG 83
Query: 59 GEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQK--AENEHLPLGFTFSFPVD 116
K M Y + E+MTG GEQLFD+IA+ L++F+ EQ + E LPLGFTFSFP
Sbjct: 84 NGKVEMTQSKYRLPEELMTGTGEQLFDFIADCLKDFMDEQFPLGKKEPLPLGFTFSFPCS 143
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
S+ + G+L+RWTKGFK GV G +VV LLQ
Sbjct: 144 QTSINE-----------------------------GILIRWTKGFKISGVEGHDVVPLLQ 174
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
+A+ RR GI ++
Sbjct: 175 EAIKRR-GI-----------------------------------------------PDID 186
Query: 237 VVAILNDTAGCLVSCAYD 254
VVA++NDT G L++CAY
Sbjct: 187 VVAVVNDTVGTLMACAYT 204
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 119 bits (300), Expect = 2e-28
Identities = 91/310 (29%), Positives = 152/310 (49%), Gaps = 30/310 (9%)
Query: 203 VRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGV 262
++W K F + VG +V + +AL + + V A+++DT G L Y +K V
Sbjct: 192 IKW-KSFSADDTVGKALVNDINRAL-EKHGLKIRVFALVDDTIGNLAGGRYYNKDTVAAV 249
Query: 263 IVGTGFNACYVERTENVSTFENEANKPF-VVINTEWGAFGDDGALDFLLTEFDRTIDDRS 321
+G G NA YVE + + +++ + + +VI+TEWG F + +TEFD ++D S
Sbjct: 250 TLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFN---SCHLPITEFDASLDAES 306
Query: 322 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYI--STIE 379
N G +I+EK+ SGMY+GEIVR ++ K EE LF +L T Y+ S
Sbjct: 307 SNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKL------TTPYLLRSPDM 360
Query: 380 AADVGDISICRNVLYQRL----ALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATL--- 432
AA D S V+ ++L + +T V +C +V++R A LA AGI +
Sbjct: 361 AAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKK 420
Query: 433 LNRMDFSIVTVGVDGSVYRYH----PYFHHMMLEKIPALISHSVIV-----GTGFNACYV 483
L R++ V V+G +Y ++ Y H + E + + +S +V++ G+G A ++
Sbjct: 421 LGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSGAGALFL 480
Query: 484 ERTENVSTFE 493
+
Sbjct: 481 AACQTGEPDS 490
Score = 90.3 bits (224), Expect = 7e-19
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPF-VVINTEWGAFGDDGALDFLLTEFDRTIDD 529
+V +G G NA YVE + + +++ + + +VI+TEWG F + +TEFD ++D
Sbjct: 248 AVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFN---SCHLPITEFDASLDA 304
Query: 530 RSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDT-----MY 584
S N G +I+EK+ SGMY+GEIVR ++ K EE LF +L+T + + M+
Sbjct: 305 ESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMH 364
Query: 585 ISTIEAADVVND 596
T E +VVN+
Sbjct: 365 QDTSEDHEVVNE 376
Score = 66.1 bits (161), Expect = 3e-11
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 12 LHKDTHATATVKCFPT------FIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEKFR-- 63
L D A+ T + T ++ LP G E G + L+L G+NF +L G K
Sbjct: 63 LVSDMTASLTAEETTTLNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPI 122
Query: 64 --MEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLP-----LGFTFSFPVD 116
+ + I ++ G ++LFDYIA L FV E + P LGFT S+PVD
Sbjct: 123 SDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVD 182
Query: 117 MMSLTKVRVLLFRNVSANAK 136
+ + + +++ SA+
Sbjct: 183 QAAASSGSAIKWKSFSADDT 202
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 42.6 bits (100), Expect = 3e-04
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 42 LALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGP--GEQLFDYIAESLENFVREQK 99
L +D+G T+ + + + + + P ++L + + E L+ +R+ K
Sbjct: 1 LGIDIGSTSTKA-GVADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLK 59
Query: 100 AENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVL 147
+E +G T V + + + + P+ +
Sbjct: 60 SEI--DAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAV 105
Score = 32.2 bits (73), Expect = 0.62
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 213 GVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHK--HCKIGVIVGTGF-N 269
V LL + + VA++ND ++ K + V +GTG
Sbjct: 78 REVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTG 137
Query: 270 ACYVERTENVSTFENE 285
VE + E
Sbjct: 138 IAIVEDGKGGVGAAGE 153
>gnl|CDD|111843 pfam02998, Lentiviral_Tat, Lentiviral Tat protein. This family
contains retroviral transactivating (Tat) proteins, from
a variety of Lentiviruses.
Length = 86
Score = 33.6 bits (77), Expect = 0.048
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 709 DACRKIFEETKDQWRRT-IR---EAFNRDLSMIRTQHNKLKTYREVNIY 753
+A R +E +D W+ R E R L+M+ + K RE+ +
Sbjct: 14 EAVRFQWERERDCWQWVSQRVPGEILQRWLAMLTNGRLRRKVIREMQKW 62
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 36.8 bits (85), Expect = 0.051
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 595 NDNSSQLIETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETS 654
D + QL T +RT + + + DE+ DNE+Q ++ + S
Sbjct: 69 TDENGQLENTSLRT--VMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLS 126
Query: 655 PVIPEKKITQKVMNQAISNINRKSEESAK----VKKLLMDKEKLIKETVLNETLLAYTDA 710
E + ++ A NI ++ + ++K+L +KE L + + E L+ TDA
Sbjct: 127 DFQLEDLVG--MIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDA 184
Query: 711 CRKIFEETK 719
K+ + K
Sbjct: 185 RIKLAAQEK 193
>gnl|CDD|212594 cd11720, FANCI, Fanconi anemia I protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCI
may function as a molecular switch to turn on the FA
pathway.
Length = 1202
Score = 36.1 bits (84), Expect = 0.086
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 768 VLLAKLDKVKEILDIVLHQHSDLLRPNIQTFAAVLECLGRKEVKPRYTEQIAGVIEQMK 826
+ L L+ EIL++VL + L + F +V++ K EQ+ I
Sbjct: 821 IALLALECFLEILNVVLQLYPSKL----EDFLSVIDVEDGGGEKSTIDEQLHFQIRHFI 875
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication,
recombination, and repair].
Length = 542
Score = 35.4 bits (82), Expect = 0.14
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 13/137 (9%)
Query: 651 LETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLMDKE-KLIKETVLNETLLA--- 706
L SP +KI + V N I + ++EE V+ + + + IK + E
Sbjct: 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDL 227
Query: 707 YTDACRKIFEETKDQW-RRTIREAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYE 765
DA + + K+ + +DL +R + + + + L VL
Sbjct: 228 LRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLA----- 282
Query: 766 DIVLLAKLDKVKEILDI 782
KL E+L+
Sbjct: 283 ---EAIKLAHALELLET 296
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 33.9 bits (78), Expect = 0.32
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 469 SHSVIVGTGFNACYVERTENVSTFENEANKPFVVINT--EWGAFGDDGALDF----LLTE 522
S++ IVG+G N C + TEN S + V+I+ E+ + D F T
Sbjct: 226 SYNTIVGSGENGCILHYTENESEMR---DGDLVLIDAGCEYKGYAGDITRTFPVNGKFTP 282
Query: 523 FDRTIDD---RSLNRGQQIYEKMVS-GMYMGEIVRLMMEKFTEEGIL 565
R I D SL ++Y S GE+VR+M+ + GIL
Sbjct: 283 AQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGIL 329
Score = 32.0 bits (73), Expect = 1.5
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 263 IVGTGFNACYVERTENVSTFENEANKPFVVINT--EWGAFGDDGALDF----LLTEFDRT 316
IVG+G N C + TEN S + V+I+ E+ + D F T R
Sbjct: 230 IVGSGENGCILHYTENESEMR---DGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRE 286
Query: 317 IDD---RSLNRGQQIYEKMVS-GMYMGEIVRLMMEKFTEEGIL 355
I D SL ++Y S GE+VR+M+ + GIL
Sbjct: 287 IYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGIL 329
>gnl|CDD|201347 pfam00619, CARD, Caspase recruitment domain. Motif contained in
proteins involved in apoptotic signaling. Predicted to
possess a DEATH (pfam00531) domain-like fold.
Length = 85
Score = 31.0 bits (71), Expect = 0.45
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 757 RVLTPEEYEDIVLLAK-LDKVKEILDIVLHQHSDLLRPNIQTFAAVLECL 805
VLT EEYE I DK +E+LD+V + + LE L
Sbjct: 29 NVLTEEEYEKIKANTTRRDKARELLDLVQKKGP-------EACQIFLEAL 71
>gnl|CDD|189025 cd09855, PIN_VapC-Smg6-like, PIN domains of VapC and Smg6
ribonucleases, ribosome assembly factor NOB1,
Archaeoglobus fulgidus AF0591 protein and homologs. PIN
(PilT N terminus) domains of such ribonucleases as the
toxins of prokaryotic toxin/antitoxin operons FitAB and
VapBC, as well as, eukaryotic ribonucleases such as
Smg6, ribosome assembly factor NOB1, exosome subunit
Rrp44 endoribonuclease are included in this family. Also
included are the PIN domains of the Pyrobaculum
aerophilum Pea0151 and Archaeoglobus fulgidus AF0591
proteins and other similar archaeal homologs. These PIN
domains are structural homologs of flap endonuclease-1
(FEN1)-like PIN domains, but lack the extensive
arch/clamp region and the H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region,
seen in FEN1-like PIN domains. PIN domains typically
contain three or four highly conserved acidic residues
(putative metal-binding, active site residues) which
cluster at the C-terminal end of the beta-sheet and form
a negatively charged pocket near the center of the
molecule.
Length = 128
Score = 31.6 bits (72), Expect = 0.52
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 640 DNEKQERLEEELET-----SPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLMDKEKL 694
+EKQ + E LE VI +V+ + + RK + S + + L
Sbjct: 14 RDEKQAKAAEVLELLVKDRDVVIS-----VQVLAELRNVATRKLKLSEDEVGERL-ERVL 67
Query: 695 IKETVLNETLLAYTDACRKIFEETKDQWRRTIREA 729
VL T T+A R W I
Sbjct: 68 RACEVLPLTPSVITEANRLARRYQLSYWDAAIIAT 102
>gnl|CDD|218083 pfam04426, Bul1_C, Bul1 C terminus. This family contains the C
terminus of Saccharomyces cerevisiae Bul1. Bul1 binds
the ubiquitin ligase Rsp5, via an N terminal PPSY motif.
The complex containing Bul1 and Rsp5 is involved in
intracellular trafficking of the general amino acid
permease Gap1, degradation of Rog1 in cooperation with
Bul2 and GSK-3, and mitochondrial inheritance. Bul1 may
contain HEAT repeats.
Length = 226
Score = 32.7 bits (75), Expect = 0.62
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 27/117 (23%)
Query: 674 INRKSEESAKVK---KLLMDKEKL--IKETVLN--ETLLAYTDACRKIFEETKDQWRRTI 726
I KS+ S +K +LLM+KEKL IK+T + + + Y +K F E K++ +
Sbjct: 54 ITAKSDNSIPIKLNSELLMNKEKLKNIKKTFKDFLKKIKEY----KKKFNENKEK----L 105
Query: 727 REAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLAKLD-KVKEILDI 782
E +N + ++ + K + + D+ LA L V + DI
Sbjct: 106 NELYNLNRTISTNRELKFTDFISTQL-----------ANDVESLANLKVNVTNLNDI 151
>gnl|CDD|213057 cd12088, helicase_insert_domain, helical domain inserted in
SF2-type helicase domain in Hef-, MDA5- and FancM-like
proteins. This helical domain can be found inserted in
a subset of SF2-type DEAD-box related helicases, like
archaeal Hef helicase, MDA5-like helicases and
FancM-like helicases. The exact function of this domain
is unknown, but seems to play a role in interaction with
nucleotides and/or the stabilization of the nucleotide
complex.
Length = 124
Score = 31.3 bits (71), Expect = 0.67
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 635 SNEMKDNEK---QERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLMDK 691
S ++D E Q RL + + E+ I + QA E S + L +
Sbjct: 8 SQLLRDTESLLKQIRLLLQRDFGTQKYEQWIL--AVQQACRVFQPHDEGSRICRALFLYT 65
Query: 692 EKLIK-----ETVLNETLLAYTDACRKIFEETK 719
L K E + + + + F +
Sbjct: 66 AHLRKLNHALELLEDAGIRDLLLYIKNFFTNVR 98
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 32.7 bits (74), Expect = 0.71
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 284 NEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKM--------VSG 335
+E N P++V +GAF DG + + D D+ L + +I E++ + G
Sbjct: 58 HECNSPYIV--GFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKG 115
Query: 336 M-YMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGI 369
+ Y+ E ++M IL N +G +L G+
Sbjct: 116 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV 150
Score = 32.7 bits (74), Expect = 0.71
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 494 NEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKM--------VSG 545
+E N P++V +GAF DG + + D D+ L + +I E++ + G
Sbjct: 58 HECNSPYIV--GFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKG 115
Query: 546 M-YMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGI 579
+ Y+ E ++M IL N +G +L G+
Sbjct: 116 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV 150
>gnl|CDD|226115 COG3587, COG3587, Restriction endonuclease [Defense mechanisms].
Length = 985
Score = 32.5 bits (74), Expect = 1.2
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 630 NNEDESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLM 689
NE+E E K+ E + +E E I + + + I N + +E K++K
Sbjct: 614 LNENEFAE-KEPELDKLKDELYEAFEKIKDLIKDRLIGADRIRNAKERKKEKIKIRKENF 672
Query: 690 DKEKLIKETVLNETLLAY 707
+ K + E + ++ +L Y
Sbjct: 673 KEFKALWEKINHKAVLQY 690
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 32.1 bits (73), Expect = 1.3
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 22/73 (30%)
Query: 402 ATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMML 461
A A D I LC V+ Q + H A AG FS +TVG+ + Y Y P
Sbjct: 341 ANASDAI----LCTVLGQNAVHGAFAG---------FSGITVGICNTHYVYLP------- 380
Query: 462 EKIPALISHSVIV 474
IP +I++ V
Sbjct: 381 --IPEVIAYPRRV 391
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.8 bits (70), Expect = 1.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 615 HLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEK 660
HLV S+E S ++E++ E D E + E E E SPV K
Sbjct: 105 HLVASEEDES----DDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|217408 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negative nucleoporin
C-terminal. This is the C-termainl half of a family of
nucleoporin proteins. Nucleoporins are the main
components of the nuclear pore complex in eukaryotic
cells, and mediate bidirectional nucleocytoplasmic
transport, especially of mRNA and proteins. Two
nucleoporin classes are known: one is characterized by
the FG repeat pfam03093; the other is represented by
this family, and lacks any repeats. RNA undergoing
nuclear export first encounters the basket of the
nuclear pore and many nucleoporins are accessible on the
basket side of the pore.
Length = 559
Score = 32.1 bits (73), Expect = 1.4
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 605 QIRTLKSSQFHLVQSK--ESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEKKI 662
+ ++S F + SK E + +E +EE LE + KI
Sbjct: 381 SLALEEASSFTITLSKRIELLLRKLAALASENDGTPILSELLSEIEELLEVA------KI 434
Query: 663 TQKVMNQAISNINRKSEESAKVKKLLMDKEKLIKETVLNETLLAYTD 709
+ ++ Q + R S+E A +D L + N+ L
Sbjct: 435 QKDLLEQLLEADQRISDEKAAAALAKLDGLILSLTKLFNDYALPAEY 481
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and
histone deacetylase 10. Histone deacetylases 6 and 10
are class IIb Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC6 is
the only histone deacetylase with internal duplication
of two catalytic domains which appear to function
independently of each other, and also has a C-terminal
ubiquitin-binding domain. It is located in the cytoplasm
and associates with microtubule motor complex,
functioning as the tubulin deacetylase and regulating
microtubule-dependent cell motility. HDAC10 has an
N-terminal deacetylase domain and a C-terminal
pseudo-repeat that shares significant similarity with
its catalytic domain. It is located in the nucleus and
cytoplasm, and is involved in regulation of
melanogenesis. It transcriptionally down-regulates
thioredoxin-interacting protein (TXNIP), leading to
altered reactive oxygen species (ROS) signaling in human
gastric cancer cells. Known interaction partners of
HDAC6 are alpha tubulin (substrate) and ubiquitin-like
modifier FAT10 (also known as Ubiquitin D or UBD) while
interaction partners of HDAC10 are Pax3, KAP1, hsc70 and
HDAC3 proteins.
Length = 336
Score = 31.5 bits (72), Expect = 1.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 452 YHPYFHHMMLEKIPALISHSVIVGTGFNACY 482
Y FHH++L V+V GF+A
Sbjct: 221 YLAIFHHILLPLALEFQPELVLVSAGFDASI 251
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 31.3 bits (71), Expect = 1.7
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 36 TETGKFLALDLGGTNFR-VLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENF 94
E L +D+GGT + L+ GE E P P E + + I +
Sbjct: 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTP-----DPEEAILEAILALVAEL 57
Query: 95 VREQKAENEHLPLGFTFSFPVDMMS 119
+++ + + +G VD +
Sbjct: 58 LKQAQGRVAIIGIGIPGPGDVDNGT 82
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 31.6 bits (71), Expect = 1.9
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 284 NEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGM------- 336
+E N P++V +GAF DG + + D D+ L ++I E+++ +
Sbjct: 58 HECNSPYIV--GFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRG 115
Query: 337 --YMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGI 369
Y+ E ++M IL N +G +L G+
Sbjct: 116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV 150
Score = 31.6 bits (71), Expect = 1.9
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 494 NEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGM------- 546
+E N P++V +GAF DG + + D D+ L ++I E+++ +
Sbjct: 58 HECNSPYIV--GFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRG 115
Query: 547 --YMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGI 579
Y+ E ++M IL N +G +L G+
Sbjct: 116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV 150
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 31.4 bits (72), Expect = 2.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 86 YIAESL-ENFVREQKAENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSA 133
Y+ ES+ + FVR A + LG + + DM SL L VSA
Sbjct: 302 YVHESIYDEFVRAFVAAVRAMRLGAGYDYSADMGSLISEAQL--ETVSA 348
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.2 bits (71), Expect = 2.7
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 608 TLKSSQFHLVQSKESNSAANKCNNED------ESNEMKDNEKQERLEEELETSPVIPEKK 661
K ++ + KES+ + E+ + +K +EK ++ EEE E P K
Sbjct: 439 LKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLK 498
Query: 662 ITQKVMNQAISNINRKSEESAKVKKLLMDKEKLIKETV 699
T V A + K + S+K+ K K +
Sbjct: 499 TTSSVGKSAKKQ-DSKKKSSSKLDKAANKISKAAVKVK 535
>gnl|CDD|129980 TIGR00902, 2A0127, phenyl proprionate permease family protein.
This family of proteins is involved in the uptake of
3-phenylpropionic acid. This uptake mechanism is for the
metabolism of phenylpropanoid compounds and plays an
important role in the natural degradative cycle of these
aromatic molecules [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 382
Score = 31.1 bits (70), Expect = 2.7
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 133 ANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCS 192
A+A +Y ++ + + + G+ T GV+ ++ L + C ++LL S
Sbjct: 220 AHAAYYGFS---AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276
Query: 193 SSTTISKCVLVRWTKGFKCEGVVGA 217
+ + RW ++GA
Sbjct: 277 AI-----ACVGRW-------AIIGA 289
>gnl|CDD|115336 pfam06673, L_lactis_ph-MCP, Lactococcus lactis bacteriophage major
capsid protein. This family consists of several
Lactococcus lactis bacteriophage major capsid proteins.
Length = 347
Score = 30.9 bits (69), Expect = 2.7
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 663 TQKVMNQAISNINRKSEESAKVKKLLMDKEKLIKETVLNETLLAYTDACRKIFEETKDQW 722
TQ++M QAI + E AKV++L ++E+L KE N DA RK E D+
Sbjct: 6 TQEIMKQAIEAGVKVRELEAKVEELNKEREELKKEREANIPSEKPEDAERKFMRELGDKM 65
Query: 723 RRTIREAFNRDLS 735
+ F R+ +
Sbjct: 66 AEMPEQGFLREFA 78
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
metabolism].
Length = 333
Score = 30.6 bits (70), Expect = 3.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 213 GVVGANVVELL---QQALVRRSNFPVNVVAILN 242
G VG+ V+E+L Q+ L +R+ + VVA+ +
Sbjct: 12 GTVGSGVLEILAEKQEELRKRAGIEIRVVAVAD 44
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 30.4 bits (69), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 86 YIAESL-ENFVREQKAENEHLPLGFTFSFPVDMMSLT 121
Y+ ES+ + FVR A L LG + DM SL
Sbjct: 266 YVHESVYDEFVRRFVARTRALRLGAALDYGPDMGSLI 302
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.3 bits (69), Expect = 4.4
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 616 LVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPE--KKITQKVMNQAISN 673
L ++K++ K + E D + E LEE L + V E ++I +++ +
Sbjct: 41 LSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKK 100
Query: 674 INRKSEESAKVKKLLMDKEKLIK 696
K EE VK+ L +E LI+
Sbjct: 101 KKIKDEE--TVKEAL--REALIE 119
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 29.4 bits (66), Expect = 4.7
Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Query: 576 TRGIFDTMYISTIEAADVVNDNSSQLIETQ--IRTLKSSQFHLVQSKESNSAANKCNNED 633
+ + + I++ + D++ +N E Q + ++ E + ++
Sbjct: 19 DENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDE 78
Query: 634 ESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLM 689
E E + + + + E + I N IS +K+E+S K + ++
Sbjct: 79 EEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQN-LISKNYKKNEKSKKTAEDIV 133
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.5 bits (69), Expect = 5.1
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 637 EMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEE----SAKVKKLLMDKE 692
K E+++ +EE S K+ ++ + + N+ R + +++KL E
Sbjct: 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAE 210
Query: 693 KLIKETVLNETLLAYTDAC--RKIFEETKDQWRRTIREAFNRDLSMIRTQHNKLK 745
K + L L A K+ E K+ E +LS + + +L+
Sbjct: 211 KAERYQELKAELRELELALLLAKLKELRKE------LEELEEELSRLEEELEELQ 259
>gnl|CDD|130700 TIGR01639, P_fal_TIGR01639, Plasmodium falciparum uncharacterized
domain TIGR01639. This model represents a conserved
sequence region of about 60 amino acids found in over 40
predicted proteins of Plasmodium falciparum. It is not
found elsewhere, including closely related species such
as Plasmodium yoelii. No member of this family is
characterized.
Length = 61
Score = 27.2 bits (61), Expect = 5.1
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 636 NEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLLM 689
N++ +E L E + + IP + + NQ K +++ L
Sbjct: 4 NDLSKKLSKEELNELINSLDEIPNRNDMLIIWNQVHGIERDKFV---DMQENLK 54
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 30.0 bits (68), Expect = 5.9
Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 21/194 (10%)
Query: 603 ETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDN--EKQERLEEELETSPVIPEK 660
+ + LK +L ++ A + + + LE E+
Sbjct: 858 KKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEI--------I 909
Query: 661 KITQKVMNQAISNINRKSEESAKVKKLL---MDKEKLIKETVLNETLLAYTDACRKIFEE 717
++ + + + I N+ K+E A++KKLL +E E V L + K+ E
Sbjct: 910 ELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKET 969
Query: 718 TKDQWRRTIREAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLAKLDKVK 777
+++ E + +++ + NK + E+ + ++Y + K K
Sbjct: 970 SEE------YEDLLKKSTILVREGNKANS--ELKNFKKELAELSKQYGALQESTKQLKEL 1021
Query: 778 EILDIVLHQHSDLL 791
+ L S ++
Sbjct: 1022 PVEVAELQSASKII 1035
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 30.1 bits (68), Expect = 6.2
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 82 QLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYT 141
+L DYI E E F R + K+RV+ FRN S A+F + +
Sbjct: 414 ELLDYIKEITEGF-RNMYLLLCSGISEIKEKNILAFEDC-KIRVV-FRNTSVYAEFLSNS 470
Query: 142 DHPLVLF----HSPGVLVRWT 158
HP LF + RW
Sbjct: 471 YHPDFLFSGLERGELLENRWV 491
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.0 bits (68), Expect = 6.3
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 15/171 (8%)
Query: 586 STIEAADVVNDNSSQLI---ETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNE 642
IE + I E Q + L+ +L + E A + E ES + E
Sbjct: 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDELAE 337
Query: 643 KQERLEEELETSPV--------IPEKKITQKVMNQAISNINRKSEE-SAKVKKLLMDKEK 693
+ LEE+LE + E + + + + + + E +KV +L +
Sbjct: 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
Query: 694 LIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDLSMIRTQHNKL 744
L E E L + R+ ++ ++ + + EA ++L + +
Sbjct: 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 29.2 bits (66), Expect = 6.7
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 614 FHLVQSKESNSAANKCNNEDESNEMKDN-EKQERLEEELETSPVIPEKKITQKVMNQAIS 672
F +K ++EDE +++KD+ +++E E+E E + V + K A
Sbjct: 9 FEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAK--------AKK 60
Query: 673 NINRKSEESAKVKKLLMDKEKLIKETVLNETLLAYTDACRKIFEE 717
+ K EE K K+ +K E E LA RK+ EE
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.6 bits (67), Expect = 7.1
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 598 SSQLIETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVI 657
L E + L + L+ ES AA + E K+ E +++ EE+L
Sbjct: 191 ERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKE-ELRKKYEEKLRQ---- 245
Query: 658 PEKKITQKVMNQAISNINRKSEESAKVKKLLMDKE--KLIKETVLNE 702
E + + Q + N ++ + + +E K IKE V E
Sbjct: 246 -ELERQAEAHEQKLKNELA-------LQAIELQREFNKEIKEKVEEE 284
>gnl|CDD|176719 cd01671, CARD, Caspase activation and recruitment domain: a
protein-protein interaction domain. Caspase activation
and recruitment domains (CARDs) are death domains (DDs)
found associated with caspases. Caspases are
aspartate-specific cysteine proteases with functions in
apoptosis, immune signaling, inflammation, and
host-defense mechanisms. In addition to caspases,
proteins containing CARDs include adaptor proteins such
as RAIDD, CARD9, and RIG-I-like helicases, which can
form mutliprotein complexes and play important roles in
mediating the signals to induce immune and inflammatory
responses. In general, DDs are protein-protein
interaction domains found in a variety of domain
architectures. Their common feature is that they form
homodimers by self-association or heterodimers by
associating with other members of the DD superfamily
including PYRIN and DED (Death Effector Domain). They
serve as adaptors in signaling pathways and can recruit
other proteins into signaling complexes.
Length = 80
Score = 27.2 bits (61), Expect = 8.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 757 RVLTPEEYEDIVLLA-KLDKVKEILDIVL 784
VLT EEYE I + + DK +++LDI+
Sbjct: 26 GVLTEEEYEKIRSESTRQDKARKLLDILP 54
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 29.5 bits (67), Expect = 8.6
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 633 DESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAK-------VK 685
+E E K+ EK+ EEEL KI + +A R++E + V
Sbjct: 135 EERIERKEEEKEREREEEL---------KILEYQREKAEREEEREAERRERKEEKEREVA 185
Query: 686 KLLMDKEKLIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDLSMIRTQHNKLK 745
+L +E+ E + L A EE + + R+ +E + R Q +L+
Sbjct: 186 RLRAQQEEAEDEREELDELRA-----DLYQEEYERKERQKEKEEAEK----RRRQKQELQ 236
Query: 746 TYRE 749
RE
Sbjct: 237 RARE 240
>gnl|CDD|182034 PRK09698, PRK09698, D-allose kinase; Provisional.
Length = 302
Score = 29.2 bits (66), Expect = 8.9
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 41 FLALDLGGTNFRV-LMIYAGE--KFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVRE 97
L +D+GGT+ R L+ GE + I+P++++G + E ++ ++R
Sbjct: 6 VLGIDMGGTHIRFCLVDAEGEILHCEKKRTAEVIAPDLVSG--------LGEMIDEYLRR 57
Query: 98 QKAENEHLPLGF 109
A + +GF
Sbjct: 58 FNARCHGIVMGF 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,735,411
Number of extensions: 4173218
Number of successful extensions: 4000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3919
Number of HSP's successfully gapped: 101
Length of query: 828
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 723
Effective length of database: 6,280,432
Effective search space: 4540752336
Effective search space used: 4540752336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)