RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4666
(828 letters)
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 397 bits (1020), Expect = e-130
Identities = 175/471 (37%), Positives = 241/471 (51%), Gaps = 82/471 (17%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY--- 57
R+ + GL K T+ +++K FP+++ P GTETG FLALDLGGTN+RVL +
Sbjct: 30 CDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNFLALDLGGTNYRVLSVTLEG 89
Query: 58 AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDM 117
G+ R++ +TY I E M+G G +LF YIAE+L +F+ +++ LGFTFSFP
Sbjct: 90 KGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKDKKFDLGFTFSFPCVQ 149
Query: 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQ 177
LT LVRWTKGF +GV G NV ELLQ
Sbjct: 150 KGLTH-----------------------------ATLVRWTKGFSADGVEGHNVAELLQT 180
Query: 178 ALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNV 237
L +R V
Sbjct: 181 ELDKR-------------------------------------------------ELNVKC 191
Query: 238 VAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEW 297
VA++NDT G L SCA + C +G+IVGTG N Y+E + V + +P VVINTEW
Sbjct: 192 VAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMDGV-KEPEVVINTEW 250
Query: 298 GAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFN 357
GAFG+ G LD T+FD+++D SL+ G+Q+YEKMVSGMY+GE+VR ++ E+ ILF
Sbjct: 251 GAFGEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFR 310
Query: 358 GKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVV 417
G +L R T Y++ +E + +L L +P D VRY C +V
Sbjct: 311 GDLPERLKVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMV 370
Query: 418 SQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468
+R+A+LA AGIA +L R++ S VTVGVDGS+Y++HP F M + + L
Sbjct: 371 VKRAAYLAGAGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLK 421
Score = 145 bits (366), Expect = 3e-37
Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+IVGTG N Y+E + V + +P VVINTEWGAFG+ G LD T+FD+++D
Sbjct: 215 GLIVGTGTNVAYIEDSSKVELMDGV-KEPEVVINTEWGAFGEKGELDCWRTQFDKSMDID 273
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
SL+ G+Q+YEKMVSGMY+GE+VR ++ E+ ILF G +L R T Y++ +E
Sbjct: 274 SLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVE- 332
Query: 591 ADVVNDNSSQLIET 604
D + L T
Sbjct: 333 ----RDPAHLLYNT 342
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 374 bits (962), Expect = e-122
Identities = 185/486 (38%), Positives = 264/486 (54%), Gaps = 94/486 (19%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
M R+ ++D+GL +TH A+VK PT+++ P+G+E G FL+LDLGGTNFRV+++ GE
Sbjct: 39 MRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVKVGE 98
Query: 61 K------FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP 114
+ +H+ Y I + MTG E LFDYI+E + +F+ + + +++ LPLGFTFSFP
Sbjct: 99 GEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFSFP 158
Query: 115 VDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVEL 174
V + K G+L+ WTKGFK G G NVV L
Sbjct: 159 VRHEDIDK-----------------------------GILLNWTKGFKASGAEGNNVVGL 189
Query: 175 LQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFP 234
L+ A+ RR +F
Sbjct: 190 LRDAIKRRG------------------------------------------------DFE 201
Query: 235 VNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVIN 294
++VVA++NDT ++SC Y+ C++G+IVGTG NACY+E +NV E + + + +N
Sbjct: 202 MDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVEGDEGR--MCVN 259
Query: 295 TEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGI 354
TEWGAFGD G LD L E+DR +D+ S N GQQ+YEK++ G YMGE+VRL++ + +E +
Sbjct: 260 TEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENL 319
Query: 355 LFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLC 414
LF+G+ S QL TRG F+T ++S +E +D GD N+L L L + DC VR C
Sbjct: 320 LFHGEASEQLRTRGAFETRFVSQVE-SDTGDRKQIYNIL-STLGLR-PSTTDCDIVRRAC 376
Query: 415 RVVSQRSAHLASAGIATLLNRM------DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468
VS R+AH+ SAG+A ++NRM D +TVGVDGSVY+ HP F + L
Sbjct: 377 ESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLT 436
Query: 469 SHSVIV 474
I
Sbjct: 437 PSCEIT 442
Score = 143 bits (362), Expect = 1e-36
Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+IVGTG NACY+E +NV E + + + +NTEWGAFGD G LD L E+DR +D+
Sbjct: 228 GMIVGTGCNACYMEEMQNVELVEGDEGR--MCVNTEWGAFGDSGELDEFLLEYDRLVDES 285
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
S N GQQ+YEK++ G YMGE+VRL++ + +E +LF+G+ S QL TRG F+T ++S +E+
Sbjct: 286 SANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVES 345
Query: 591 ADVVNDNSSQLIET 604
++ T
Sbjct: 346 DTGDRKQIYNILST 359
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 367 bits (942), Expect = e-118
Identities = 133/477 (27%), Positives = 208/477 (43%), Gaps = 92/477 (19%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMI--YA 58
+ +++DKGL K + P ++ + P G ETG FLALDLGGTN RV+++
Sbjct: 45 VKHFISELDKGLSKKGG---NIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVKLGG 101
Query: 59 GEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE--NEHLPLGFTFSFPVD 116
F Y + + TG EQL+ +IA+ L+ FV E + +E LPLGFTFS+P
Sbjct: 102 NHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPAS 161
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
+ GVL RWTKGF EGV G +VV +LQ
Sbjct: 162 QKKINS-----------------------------GVLQRWTKGFDIEGVEGHDVVPMLQ 192
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
+ + + P+N
Sbjct: 193 EQIEKLN-------------------------------------------------IPIN 203
Query: 237 VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFE-----NEANKPFV 291
VVA++NDT G LV+ Y K+G+I+GTG N Y + + E + +
Sbjct: 204 VVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPM 263
Query: 292 VINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTE 351
IN E+G+F D+ L T++D ID+ S GQQ +EKM SG Y+GEI+RL++ +
Sbjct: 264 AINCEYGSF-DNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYD 322
Query: 352 EGILFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVR 411
G +F + +L + DT Y S IE ++ ++ L + T + +R
Sbjct: 323 SGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIE-TTVVERKLIR 381
Query: 412 YLCRVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468
L +V R+A L G++ + ++ + + DGSV+ +P + + + +
Sbjct: 382 KLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIY 438
Score = 136 bits (344), Expect = 3e-34
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 471 SVIVGTGFNACYVERTENVSTFE-----NEANKPFVVINTEWGAFGDDGALDFLLTEFDR 525
+I+GTG N Y + + E + + IN E+G+F D+ L T++D
Sbjct: 228 GIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSF-DNEHLVLPRTKYDV 286
Query: 526 TIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYI 585
ID+ S GQQ +EKM SG Y+GEI+RL++ + G +F + +L + DT Y
Sbjct: 287 IIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYP 346
Query: 586 STIEAADVVNDNSSQLIETQ 605
S IE D L +T
Sbjct: 347 SKIED-----DPFENLEDTD 361
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 363 bits (934), Expect = e-118
Identities = 167/480 (34%), Positives = 251/480 (52%), Gaps = 91/480 (18%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
+++ + KGL + +++ PTF++ P G+E G FLALDLGGTNFRVL++
Sbjct: 24 QAQMRKAMAKGLRGEAS---SLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTT 80
Query: 61 KFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDMMSL 120
++ + Y I + G G+QLFD+I + + +F ++Q + LPLGFTFSFP + L
Sbjct: 81 GVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGL 140
Query: 121 TKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALV 180
+ G+L+ WTKGF
Sbjct: 141 DQ-----------------------------GILLNWTKGF------------------- 152
Query: 181 RRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAI 240
K G +VV LL++A+ RR +NVVAI
Sbjct: 153 -----------------------------KASDCEGQDVVSLLREAITRRQAVELNVVAI 183
Query: 241 LNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAF 300
+NDT G ++SC Y+ C+IG+IVGTG NACY+E NV+ ++ + + IN EWGAF
Sbjct: 184 VNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGR--MCINMEWGAF 241
Query: 301 GDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKG 360
GDDG+L L T FD ++D S+N G+Q +EKM+SGMY+GEIVR ++ T G+LF G+
Sbjct: 242 GDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQ 301
Query: 361 SHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQR 420
+L TR IF T ++S IE +D + R +L + L LP T+ D + V +C+ VSQR
Sbjct: 302 IQRLQTRDIFKTKFLSEIE-SDSLALRQVRAIL-EDLGLP-LTSDDALMVLEVCQAVSQR 358
Query: 421 SAHLASAGIATLLNRM------DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV 474
+A L AG+A ++ ++ + V+VGVDG++Y+ HP F ++ + L V+
Sbjct: 359 AAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVT 418
Score = 145 bits (368), Expect = 1e-37
Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+IVGTG NACY+E NV+ ++ + + IN EWGAFGDDG+L L T FD ++D
Sbjct: 204 GLIVGTGTNACYMEELRNVAGVPGDSGR--MCINMEWGAFGDDGSLAMLSTRFDASVDQA 261
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
S+N G+Q +EKM+SGMY+GEIVR ++ T G+LF G+ +L TR IF T ++S IE+
Sbjct: 262 SINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIES 321
Query: 591 ADVVNDNSSQLIET 604
+ ++E
Sbjct: 322 DSLALRQVRAILED 335
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 373 bits (958), Expect = e-116
Identities = 185/484 (38%), Positives = 262/484 (54%), Gaps = 92/484 (19%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
R+ A+++ GL K TH A VK P+F++ P GTE G FLALDLGGTNFRVL++
Sbjct: 488 KKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRS 547
Query: 61 K----FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVD 116
M +K Y I EIM G GE+LFD+I + +F+ + +PLGFTFSFP
Sbjct: 548 GKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIKGPRMPLGFTFSFPCQ 607
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
SL G+L+ WTKGFK VG +VV LL+
Sbjct: 608 QTSLDA-----------------------------GILITWTKGFKATDCVGHDVVTLLR 638
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
A+ RR F ++
Sbjct: 639 DAIKRRE------------------------------------------------EFDLD 650
Query: 237 VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTE 296
VVA++NDT G +++CAY+ C++G+IVGTG NACY+E +NV E + + + IN E
Sbjct: 651 VVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEGDQGQ--MCINME 708
Query: 297 WGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILF 356
WGAFGD+G LD + T +DR +D+ SLN G+Q YEKM+SGMY+GEIVR ++ FT++G LF
Sbjct: 709 WGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLF 768
Query: 357 NGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRV 416
G+ S L TRGIF+T ++S IE +D + R +L Q+L L +T D I V+ +C V
Sbjct: 769 RGQISETLKTRGIFETKFLSQIE-SDRLALLQVRAIL-QQLGLN-STCDDSILVKTVCGV 825
Query: 417 VSQRSAHLASAGIATLLNRM------DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISH 470
VS+R+A L AG+A +++++ D VTVGVDG++Y+ HP+F +M + + L
Sbjct: 826 VSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPK 885
Query: 471 SVIV 474
+
Sbjct: 886 CNVS 889
Score = 360 bits (924), Expect = e-111
Identities = 173/483 (35%), Positives = 265/483 (54%), Gaps = 92/483 (19%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
M+R ++ GL +D + TATVK PTF++ +P G+E G F+ALDLGG++FR+L +
Sbjct: 40 MTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNH 99
Query: 61 K----FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVD 116
+ ME + Y I+ G G QLFD++AE L +F+ ++K +++ LP+GFTFSFP
Sbjct: 100 EKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVGFTFSFPCQ 159
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
+ + +L+ WTK FK GV GA+VV+LL
Sbjct: 160 QSKIDE-----------------------------AILITWTKRFKASGVEGADVVKLLN 190
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
+A+ +R N
Sbjct: 191 KAIKKRGDY------------------------------------------------DAN 202
Query: 237 VVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTE 296
+VA++NDT G +++C YD +HC++G+I+GTG NACY+E ++ E + + + INTE
Sbjct: 203 IVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLVEGDEGR--MCINTE 260
Query: 297 WGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILF 356
WGAFGDDG+L+ + TEFDR ID SLN G+Q++EKMVSGMY+GE+VRL++ K +EG+LF
Sbjct: 261 WGAFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLF 320
Query: 357 NGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRV 416
G+ + +L TRG F+T +S IE G + +L RL + + DC+ V+++C +
Sbjct: 321 EGRITPELLTRGKFNTSDVSAIEKNKEGL-HNAKEIL-TRLGVE-PSDDDCVSVQHVCTI 377
Query: 417 VSQRSAHLASAGIATLLNRMDFS------IVTVGVDGSVYRYHPYFHHMMLEKIPALISH 470
VS RSA+L +A + +LNR+ + TVGVDGS+Y+ HP + + + L+
Sbjct: 378 VSFRSANLVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPD 437
Query: 471 SVI 473
S +
Sbjct: 438 SDV 440
Score = 146 bits (369), Expect = 3e-36
Identities = 67/135 (49%), Positives = 91/135 (67%), Gaps = 7/135 (5%)
Query: 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 531
+IVGTG NACY+E +NV E + + + IN EWGAFGD+G LD + T +DR +D+ S
Sbjct: 676 LIVGTGSNACYMEEMKNVEMVEGDQGQ--MCINMEWGAFGDNGCLDDIRTHYDRLVDEYS 733
Query: 532 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAA 591
LN G+Q YEKM+SGMY+GEIVR ++ FT++G LF G+ S L TRGIF+T ++S IE+
Sbjct: 734 LNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIES- 792
Query: 592 DVVNDNSSQLIETQI 606
D + L I
Sbjct: 793 ----DRLALLQVRAI 803
Score = 138 bits (349), Expect = 9e-34
Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 2/132 (1%)
Query: 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 531
+I+GTG NACY+E ++ E + + + INTEWGAFGDDG+L+ + TEFDR ID S
Sbjct: 228 LIIGTGTNACYMEELRHIDLVEGDEGR--MCINTEWGAFGDDGSLEDIRTEFDRAIDAYS 285
Query: 532 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAA 591
LN G+Q++EKMVSGMY+GE+VRL++ K +EG+LF G+ + +L TRG F+T +S IE
Sbjct: 286 LNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKN 345
Query: 592 DVVNDNSSQLIE 603
N+ +++
Sbjct: 346 KEGLHNAKEILT 357
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 302 bits (773), Expect = 3e-94
Identities = 62/474 (13%), Positives = 127/474 (26%), Gaps = 91/474 (19%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
+ + + + + A++ P ++ G + G FLA+ +GG + V++I
Sbjct: 23 LQAVVSILTTRXDDXDSSAASIPMVPGWVLKQVSGAQAGSFLAIVMGGGDLEVILISLAG 82
Query: 61 K--FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE-NEHLPLGFTFSFPVDM 117
+ + + T L+ A S F + + +PLGFTF
Sbjct: 83 RQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSSXAGSVPLGFTFXEAGAK 142
Query: 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQ 177
+ K G + F ++ +
Sbjct: 143 EXVIK-----------------------------GQITXQAXAFSLA--XLXKLISAMXN 171
Query: 178 ALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNV 237
A
Sbjct: 172 AXFPA-------------------------------------------------GDXXXS 182
Query: 238 VAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENE---ANKPFVVIN 294
VA + D+ G L Y K+G+I G+G NA Y + + + + I
Sbjct: 183 VADIXDSHGILXXVNYTDAXIKMGIIFGSGVNAAYWCDSTXIGDAADGGXXGGAGXMXIC 242
Query: 295 TEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGI 354
+ +F + T++ S + + K G+ +R ++ F G
Sbjct: 243 CDQSSF-RKAFPSLPQIXYLXTLNXXS-PXAXKTFXKNSXAKNXGQSLRDVLMXFKXXGQ 300
Query: 355 LFNGKGSHQLSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLC 414
+ + +T Y + I+ D+ ++ + VR
Sbjct: 301 XH-XXXAXSFXAANVENTSYPAKIQKLPHFDLRXXXDLFXGDQGIA-XKTXMKXVVRRXL 358
Query: 415 RVVSQRSAHLASAGIATLLNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468
+++ + L I + + +S + GS Y F +
Sbjct: 359 FLIAAYAFRLVVCXIXAICQKKGYSSGHIAAXGSXRSY-SGFSXNSATXNXNIY 411
Score = 104 bits (260), Expect = 1e-23
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 472 VIVGTGFNACYVERTENVSTFENE---ANKPFVVINTEWGAFGDDGALDFLLTEFDRTID 528
+I G+G NA Y + + + + I + +F + T++
Sbjct: 207 IIFGSGVNAAYWCDSTXIGDAADGGXXGGAGXMXICCDQSSF-RKAFPSLPQIXYLXTLN 265
Query: 529 DRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTI 588
S + + K G+ +R ++ F G + + +T Y + I
Sbjct: 266 XXS-PXAXKTFXKNSXAKNXGQSLRDVLMXFKXXGQXH-XXXAXSFXAANVENTSYPAKI 323
Query: 589 EAADVVNDNSSQL 601
+ L
Sbjct: 324 QK-----LPHFDL 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 1e-10
Identities = 68/437 (15%), Positives = 133/437 (30%), Gaps = 133/437 (30%)
Query: 453 HPYFHHMMLEKIPALISHSVIVGTG-FNACYVERTENVSTFENEANKPFVVINTE---WG 508
H + HHM E TG Y + +S FE+ F + +
Sbjct: 1 HHHHHHMDFE-------------TGEHQYQY---KDILSVFEDAFVDNFDCKDVQDMPKS 44
Query: 509 AFGDDGALDFLLTEFDRTIDDRSL-----NRGQQIYEKMVSGMYMGEIVRL----MMEKF 559
+ +D ++ D L ++ +++ +K ++ E++R+ +M
Sbjct: 45 ILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-----FVEEVLRINYKFLMSPI 98
Query: 560 TEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVVNDNSS---------QLIETQIRT-- 608
E + MYI + + NDN Q ++R
Sbjct: 99 KTEQR-----------QPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPY-LKLRQAL 144
Query: 609 --LKSSQFHLVQ----SKESNSAANKCNNEDESNEMKDN------EKQERLEEELETSPV 656
L+ ++ L+ S ++ A + C + +M + E LE
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---- 200
Query: 657 IPEKKITQKVMNQAISNINRKSEESAKVKKLLMD----KEKLIKETVLNETLLAYTDACR 712
+ QK++ Q N +S+ S+ +K + +L+K LL
Sbjct: 201 -----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------- 248
Query: 713 KIFEETKDQWRRTIREAFN---------RDLSMIRTQHNKLKTYREVNIYPFLRVLTPEE 763
+ + AFN R + T +++ LTP+E
Sbjct: 249 -VLL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDE 302
Query: 764 YEDIVLLAKLDKVK------EILDI---VLHQHSDLLRPNIQTF---------------A 799
+ LL K + E+L L ++ +R + T+
Sbjct: 303 VKS--LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 800 AVLECLGRKEVKPRYTE 816
+ L L E + +
Sbjct: 361 SSLNVLEPAEYRKMFDR 377
Score = 57.2 bits (137), Expect = 2e-08
Identities = 104/711 (14%), Positives = 213/711 (29%), Gaps = 243/711 (34%)
Query: 5 NADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGEKFRM 64
+ID + + T++ F T + + E + ++ N++ LM +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLM----SPIKT 100
Query: 65 EHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDMMSLTKVR 124
E P +MT +++ + L N D K
Sbjct: 101 E----QRQPSMMT----RMYIEQRDRLYN----------------------DNQVFAK-- 128
Query: 125 VLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGAN----VVELLQQALV 180
NVS + L L + VL+ +GV+G+ +++ V
Sbjct: 129 ----YNVSRLQPYLKLRQALLELRPAKNVLI--------DGVLGSGKTWVALDVCLSYKV 176
Query: 181 RRC---GIS--NVLLCSSSTTISKCV---LVRWTKGFKCEGVVGANV---VELLQQALVR 229
+ I N+ C+S T+ + + L + + +N+ + +Q L R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 230 ---RSNFPVNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVERTENVSTFENEA 286
+ N + +L + A++ CKI ++ T R + V+ F + A
Sbjct: 237 LLKSKPYE-NCLLVLLNVQNAKAWNAFNLS-CKI--LLTT--------RFKQVTDFLSAA 284
Query: 287 NKPFVVINTEWGAFGDDGALDFLLTEFDRTIDD-----------------RSLNRGQQIY 329
+ ++ D LL D D S+ G +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 330 E--KMVSGMYMGEIVRLMMEKFTEEGI--LFNGKGSHQLSTRGIF-DTMYIST------- 377
+ K V+ + I+ + +F +LS +F + +I T
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-----DRLS---VFPPSAHIPTILLSLIW 396
Query: 378 --IEAADVGDI-------SIC-RNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASA 427
+ +DV + S+ + +++P I + ++ ++ + H
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------IYLELKVKLENEYALH---- 446
Query: 428 GIATLLNRMDF-------SIVTVGVDGSVYRYHPYF-HHMMLEKIPALISHSVIVGTGFN 479
++++ + ++ +D Y Y + HH+
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIPPYLDQ--YFYS-HIGHHLK------------------- 482
Query: 480 ACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIY 539
+E E ++ F F LDF
Sbjct: 483 --NIEHPERMTLFR----MVF---------------LDF--------------------- 500
Query: 540 EKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTM-----YISTIEAADVV 594
R + +K + +N GS I +T+ Y I
Sbjct: 501 -------------RFLEQKIRHDSTAWNASGS-------ILNTLQQLKFYKPYI----CD 536
Query: 595 NDNS-SQLIETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQ 644
ND +L+ + L + +L+ SK ++ EDE+ ++ KQ
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQ 586
Score = 49.9 bits (118), Expect = 3e-06
Identities = 88/590 (14%), Positives = 184/590 (31%), Gaps = 189/590 (32%)
Query: 360 GSHQLSTRGI---FDTMYISTIEAADVGDISICRNVLYQR-----LALPHATAQDCIDVR 411
G HQ + I F+ ++ + DV D+ +++L + + A +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDAVSG----TL 65
Query: 412 YLCRVVSQRSAHLASAGIATLL-----------------------------NRMDFSIVT 442
L + + + + +L +R+ ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQ 124
Query: 443 VGVDGSVYRYHPYFHHMMLEKIPALISHSVIV-----GTG-----FNACYVERTENVSTF 492
V +V R PY + + + L ++ G+G + C + V
Sbjct: 125 VFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKV--- 176
Query: 493 ENEANKPFVVINTEWGAFG----DDGALDF---LLTEFDRTIDDRSLNRGQQIYEKMVSG 545
+ F + W + L+ LL + D RS + I ++ S
Sbjct: 177 --QCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSI 230
Query: 546 MYMGEIVRLMMEKFTEEGIL-------------FNGKGSHQLSTRGIFDTMYISTIEAAD 592
E+ RL+ K E +L FN L+TR T ++S
Sbjct: 231 QA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 593 V-VNDNSSQLIETQIRTLKSSQFHLVQSKESNSAANKCN---------NEDESNEMKDNE 642
+ ++ +S L ++++L ++ + ++ N + + DN
Sbjct: 289 ISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 643 KQ---ERLEEELETS-----P-----------VIPEK-KITQKVMNQAISNINRKSEESA 682
K ++L +E+S P V P I ++ ++ + +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVM 405
Query: 683 KV-----KKLLMDK-----------------EKLIKETVLNETLL-AY-TDACRKIFEET 718
V K L++K KL E L+ +++ Y +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 719 KDQWR-----------RTIREA-----FNR---DLSMIRTQHNKLK-------------- 745
+ I F D + K++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDSTAWNASGSILN 522
Query: 746 TYREVNIY-PFLRVLTPEEYEDIV--LLAKLDKVKEILDIVLHQHSDLLR 792
T +++ Y P++ P+ YE +V +L L K++E +++ +++DLLR
Sbjct: 523 TLQQLKFYKPYICDNDPK-YERLVNAILDFLPKIEE--NLICSKYTDLLR 569
Score = 48.7 bits (115), Expect = 7e-06
Identities = 88/653 (13%), Positives = 200/653 (30%), Gaps = 157/653 (24%)
Query: 138 YTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTI 197
Y Y D +L + F C+ +V ++ + L + I +++ S +
Sbjct: 16 YQYKD---ILSV---FEDAFVDNFDCK-----DVQDMPKSILSKE-EIDHII--MSKDAV 61
Query: 198 SKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAG-CLVSCAYDHK 256
S + + WT K E +V V E+L+ N+ + I + +++ Y +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRI------NYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 257 HCKI--GVIVGTGFNACYVERTENVSTFENEANK----PFVVINTEWGAFG-------DD 303
++ V +N V R + + V+I+ G G D
Sbjct: 116 RDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALD 169
Query: 304 GALDF-LLTEFDRTI----------DDRSLNRGQQIYEKMVSGMYMG------------- 339
L + + + D I + L Q++ ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 340 ---EIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIS-TIEAADVG--------DIS 387
E+ RL+ K E +L + + + A ++
Sbjct: 230 IQAELRRLLKSKPYENCLL-------------VLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 388 ICRNV---LYQRLALPHA----TAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMDFSI 440
+ + ++L H T + + L + + R L N SI
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPRE--VLTTNPRRLSI 332
Query: 441 VTVGVDGSVYRYHP----YFHHMMLEKIPALISHSVIV--GTGFNACYVERTENVSTFEN 494
+ R + H+ +K+ +I S+ V + + + +S F
Sbjct: 333 I-----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383
Query: 495 EANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSL-NRGQQIYEKMVSGMYMGEIVR 553
A+ P ++++ W + + + + SL + + + +Y+ V+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVV-VNKLHK----YSLVEKQPKESTISIPSIYLELKVK 438
Query: 554 LMMEKFTEEGIL--FNGKGSHQLSTRGI-FDTMYI--------STIEAADVVNDNSSQLI 602
L E I+ +N + + Y IE + + +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 603 ETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEKKI 662
+ F ++ K + + + N ++ + + I +
Sbjct: 499 D----------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---------ICDNDP 539
Query: 663 TQKVMNQAISNINRKSEESAKVKKLLMDKEK-LIKETVLNETLLAYTDACRKI 714
+ + AI + K EE L+ K L++ ++ E + +A +++
Sbjct: 540 KYERLVNAILDFLPKIEE-----NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 40.2 bits (93), Expect = 0.003
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 42/140 (30%)
Query: 689 MDKEKLIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDLSMIRTQHNKLKTYR 748
MD E E Y D I +AF + +
Sbjct: 7 MDFE-------TGEHQYQYKD----ILS--------VFEDAFVDNFD-----------CK 36
Query: 749 EVNIYPFLRVLTPEEYEDIVLLA-KLDKVKEILDIVLHQHS--------DLLRPNIQTFA 799
+V P +L+ EE + I++ + + +L + ++LR N +
Sbjct: 37 DVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 800 AVL--ECLGRKEVKPRYTEQ 817
+ + E + Y EQ
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQ 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 4e-10
Identities = 73/512 (14%), Positives = 153/512 (29%), Gaps = 159/512 (31%)
Query: 2 SRLNADIDKGLHKDTHATATVKCF----PTFIQDLPQGTETGKFLALDLGGTNFRVLMIY 57
++L + D L K +K + + + + + F A+ G N +++ I+
Sbjct: 106 AKLLQENDTTLVK---TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG--NAQLVAIF 160
Query: 58 AG--------EKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGF 109
G E+ R ++TY + L + AE+L +R + G
Sbjct: 161 GGQGNTDDYFEELRDLYQTYH--VLV-----GDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 110 TFSFPVDMMS-LTK------VRVLLFRNVSANAKFYTYTDHPLVLFHSPGV--LVRWTKG 160
+++ L LL +S PL+ GV L +
Sbjct: 214 ------NILEWLENPSNTPDKDYLLSIPISC----------PLI-----GVIQLAHYVVT 252
Query: 161 FKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVV 220
K G + L+ A G+ + + + + W + F +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--------W-ESFFV---SVRKAI 300
Query: 221 ELL-------QQALVRRSNFPVNVVAILND----TAGCLVSCAYDHKHCKIGVIVGTGFN 269
+L +A ++ P +++ + ++S + +
Sbjct: 301 TVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSI----SNLTQEQV------ 349
Query: 270 ACYVERTENVSTFENEA------NKP--FVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 321
YV +T N + N VV + G +L L +
Sbjct: 350 QDYVNKT-NSHLPAGKQVEISLVNGAKNLVV--S-----GPPQSLYGLNLTLRKAKAPSG 401
Query: 322 LNRGQQIY--EKMVSGM------------YMGEIVRLMMEKFTEEGILFNGKGSHQLSTR 367
L++ + + K+ + L+ + + + FN K +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK---DI--- 455
Query: 368 GI--FDTMYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLC---RVVSQRSA 422
I +DT D D+ + + +R+ DCI +R ++
Sbjct: 456 QIPVYDT--------FDGSDLRVLSGSISERIV-------DCI-IRLPVKWETTTQFKAT 499
Query: 423 HL------ASAGIATLLNRMDFSIVTVGVDGS 448
H+ ++G+ L +R DG+
Sbjct: 500 HILDFGPGGASGLGVLTHRN--------KDGT 523
Score = 50.0 bits (119), Expect = 3e-06
Identities = 70/435 (16%), Positives = 122/435 (28%), Gaps = 147/435 (33%)
Query: 268 FNACYVERTENVSTFENEANKP---------FVVINTEWGAFGD-DGALDFLLTEFDRTI 317
FN E TE + ++E P +V E G D L+ LTEF+
Sbjct: 37 FNKILPEPTEGFAA-DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 318 ---DD-----RSL---NRGQQIYEKMVSGMYMGEIVRLMMEKFT-----------EEG-- 353
+D L N + K + Y+ + F EG
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 354 ---ILFNGKGSHQ-----LSTRGIFDTMYISTIEAADVGDISICRNVLYQRLALPHATAQ 405
+F G+G+ L R ++ T Y + I L + + +
Sbjct: 155 QLVAIFGGQGNTDDYFEEL--RDLYQT-YHVLVGDL----IKFSAETLSELIRTTLDAEK 207
Query: 406 DC---IDVRYLCRVVSQR--SAHLASA-------GIATLLNRMDFSIVTVGVDGSVYRYH 453
+++ S +L S G+ L + + +VT + G +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---Y-VVTAKLLG----FT 259
Query: 454 PYFHHMMLEKIPALISHS--VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFG 511
P + + HS ++ A + T++ +F K
Sbjct: 260 P---GELRSYLKGATGHSQGLVT-----AVAIAETDSWESFFVSVRK------------- 298
Query: 512 DDGALDFL----LTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFN 567
A+ L + R + Y + ++E E
Sbjct: 299 ---AITVLFFIGV-------------RCYEAYPNT-------SLPPSILEDSLENN---E 332
Query: 568 GKGSHQLSTRG---------IFDT---------MYISTIEAAD--VVNDNSSQL--IETQ 605
G S LS + T + IS + A VV+ L +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 606 IRTLKSSQFHLVQSK 620
+R K+ L QS+
Sbjct: 393 LRKAKAPS-GLDQSR 406
Score = 42.7 bits (100), Expect = 6e-04
Identities = 51/244 (20%), Positives = 79/244 (32%), Gaps = 70/244 (28%)
Query: 37 ETGKFLALDLGGTNFRVLMIY-AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFV 95
+T F LD+ N L I+ GEK + + Y M E + D ++ + F
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA----MIF--ETIVDGKLKTEKIF- 1707
Query: 96 REQKAENEHLPLGFTFSFPVDMMSLTK--------VRVLLFR------NVSANAKF---- 137
K NEH +TF ++S T+ + F + A+A F
Sbjct: 1708 ---KEINEHST-SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 138 ---YTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVV----ELLQQALVR-RCGISNVL 189
Y L V+ E +V VV +Q A+ R G SN
Sbjct: 1764 LGEYA------ALASLADVM-----SI--ESLV--EVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 190 LCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILND-TAGCL 248
+ + R F E + VVE + +R+ + V +V N
Sbjct: 1809 MIA-------INPGRVAASFSQEAL--QYVVERVG----KRTGWLVEIV---NYNVENQQ 1852
Query: 249 VSCA 252
A
Sbjct: 1853 YVAA 1856
Score = 42.3 bits (99), Expect = 7e-04
Identities = 50/298 (16%), Positives = 94/298 (31%), Gaps = 94/298 (31%)
Query: 297 WGAFGDDGALDFLLTEFDRTIDDRSLN------------RGQQIYEKMVSGMY-MGEIVR 343
W + A + + +I D +N +G++I E + ++ +
Sbjct: 1646 W-----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 344 LMMEKFTEE------GILFNG-KGSHQLSTRGIFDTMY----ISTIEAADVGDISICRNV 392
L EK +E F KG + T + ++ +E A
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGL-------LSATQFTQPALTLMEKA------AFE-D 1746
Query: 393 LYQRLALP-------H---------ATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM 436
L + +P H + A D + + L VV R + A L R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 437 DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIVGTGFN---ACYVERTENVSTFE 493
++ ++ + G V F L+ + + TG+ Y
Sbjct: 1806 NYGMIAIN-PGRV---AASFSQEALQYVVERVGKR----TGWLVEIVNY----------- 1846
Query: 494 NEANKPFVVINTEWGAFGDDGALDFLLTEFD----RTIDDRSLNRGQQIYEKMVSGMY 547
N N+ +V A GD ALD + + + ID L + + E++ ++
Sbjct: 1847 NVENQQYVA------A-GDLRALDTVTNVLNFIKLQKIDIIELQKSLSL-EEVEGHLF 1896
Score = 39.6 bits (92), Expect = 0.005
Identities = 94/580 (16%), Positives = 162/580 (27%), Gaps = 183/580 (31%)
Query: 46 LGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHL 105
+ + R L + G +EH + P QL + + L A++E
Sbjct: 1 MDAYSTRPLTLSHGS---LEH-VLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDE-- 53
Query: 106 PLGFTFSFPVDMMSLTKVRVLLFRNVSANAKFYTYTDH---PLVLFHSPGVLVRWTKGFK 162
P L KF Y P + VL F+
Sbjct: 54 --------PTTPAELV-------------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 163 CEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKCVLVRWTKG-FKCEGVVGANVVE 221
+ G ++ AL + LL + TT+ K K + +
Sbjct: 93 NCYLEGNDI-----HALAAK------LLQENDTTLVK--TKELIKNYITARIMAKRPFDK 139
Query: 222 LLQQALVRRSNFP-VNVVAILNDTAGCLVSCAYDHKHCKIGVIVGTGFNACYVE--R--- 275
AL R +VAI G G Y E R
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG----------------------GQGNTDDYFEELRDLY 177
Query: 276 ---TENVSTFENEANK---PFVVINTEWGAFGDDGALDFL--LTEFDRTIDDRSLNRGQ- 326
V + + + + G L+ L L T D L
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPI 236
Query: 327 --------QI--YEKM--VSGMYMGEIVRLMMEKFTEEGILFNGKG---SHQLSTRGIFD 371
Q+ Y + G GE+ + +G + +G + ++ ++
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYL------KGATGHSQGLVTAVAIAETDSWE 290
Query: 372 TMYISTIEAADV----GDISICR-NVLYQRLALPHATAQDCID-----------VRYLCR 415
+ ++S +A V G R Y +LP + +D ++ + L +
Sbjct: 291 SFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 416 -----VVSQRSAHLASAG---IATLLN-RMDFSIVT-------------------VGVDG 447
V++ ++HL + I+ L+N + +V+ G+D
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNL-VVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 448 S-----------VYRYHPY---FHHMMLEKIPALISHSVIVGT-GFNACY----VERTE- 487
S R+ P FH +L LI+ ++ FNA V T
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 488 --NVSTFENEANKPFV-VINTE---WGAFGDDGA---LDF 518
++ ++ V I W A LDF
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 39.3 bits (91), Expect = 0.006
Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 104/304 (34%)
Query: 418 SQR-----SAHLASAGIATLLNRMD--------FSIVTVGVDGSVYRYHPYFH----HMM 460
SQ + S + NR D FSI+ + V + +F +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRI 1684
Query: 461 LEKIPALISHSVIVG-TGFNACYVERTENVS--TFENEANKPFVVINT------------ 505
E A+I +++ G + E E+ + TF +E T
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 506 ----EWGAFGDD--------G---AL----DFLLTEFDRTIDDRSL--NRG---QQIYEK 541
G D G AL D + + ++ + RG Q +
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIESLVE---VVFYRGMTMQVAVPR 1799
Query: 542 MVSGMYMGEIVRL----MMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVVNDN 597
G ++ + + F++E + + + + + T ++VN N
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEAL------------QYVVERVGKRTGWLVEIVNYN 1847
Query: 598 SS--QLI--------ETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERL 647
Q + +T L K D E++ + E +
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLN---------------FIKLQKIDII-ELQKSLSLEEV 1891
Query: 648 EEEL 651
E L
Sbjct: 1892 EGHL 1895
Score = 33.9 bits (77), Expect = 0.32
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 45/121 (37%)
Query: 39 GKFLAL-----DLGGTNFRVLMIYAGE---KFRMEHKTY---PISPEIMTG--------- 78
G + + +LG +N+ ++ I G F E Y + TG
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYN 1847
Query: 79 -PGEQLFDYIA----ESLE------NFVREQKAENEHLPLGFTFSFPVDMMSLTKVRVLL 127
+Q Y+A +L+ NF++ QK + L +SL +V L
Sbjct: 1848 VENQQ---YVAAGDLRALDTVTNVLNFIKLQKIDIIELQ---------KSLSLEEVEGHL 1895
Query: 128 F 128
F
Sbjct: 1896 F 1896
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 49.4 bits (116), Expect = 5e-06
Identities = 26/213 (12%), Positives = 72/213 (33%), Gaps = 26/213 (12%)
Query: 616 LVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNIN 675
L + + + +++ +++ LE + ++ + + +
Sbjct: 44 LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAP 103
Query: 676 RKSEESAKVKKLLMDKEKLIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDLS 735
K S V++ + + + + LLA+ C +
Sbjct: 104 GKL--SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ-------------LPLAHH 148
Query: 736 MIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLAKLDKVKEILDIVLHQHSDLLRPNI 795
++ H + + + + + + V+ ++ +L +V L P++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVM-----LGWARQGAFKELVYVLFMVKDAG---LTPDL 200
Query: 796 QTFAAVLECLGRKEVKPRYTEQIAGVIEQMKHY 828
++AA L+C+GR++ + I +EQM
Sbjct: 201 LSYAAALQCMGRQD---QDAGTIERCLEQMSQE 230
Score = 39.8 bits (91), Expect = 0.004
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 6/141 (4%)
Query: 632 EDESNEMKDNEKQERLEEELETSPVIPE--KKITQKVMNQAISNINRKSEESAKVKKLLM 689
+ +L + TS ++ + K + + + K + +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 690 DKEKLIKETVLNETLLAYTDACRKIFEETKDQWRRTIREAFNRDLSMIRTQHNKLKTYRE 749
+ RK + +DQW + + A + + + + +
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRF--- 369
Query: 750 VNIYPFLRVLTPEEYEDIVLL 770
++YPFL +L E ++L
Sbjct: 370 -SLYPFLCLLDEREVVRMLLQ 389
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.017
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 671 ISNINRKSEESAKVKKLLMDKEKLI---------KETVLNETLLAYTDACRKIFEETKDQ 721
I+ +R ++E ++K ++ K + E E + + E ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 722 WRRTIR---EAF--NRDLSMI 737
+ R +AF D +I
Sbjct: 134 NKINNRIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 2.7
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 624 SAANKCNNEDES-----------NEMKDNEKQERLEEELETSPVIPEKKITQ--KVMNQA 670
+ A++ E ES + D + +E E + +K + + + ++
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA----KKDLEEWNQRQSEQ 130
Query: 671 ISNI---NRKSEE 680
+ NR +++
Sbjct: 131 VEKNKINNRIADK 143
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase,
1,5-benzodiazepine, transferase; HET: IX6; 1.55A
{Hepatitis c virus subtype 1A} PDB: 3qgi_A* 3qgh_A*
2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A*
3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A*
3igv_A* 2ax0_A* 2awz_A* 2ax1_A* ...
Length = 581
Score = 33.9 bits (77), Expect = 0.22
Identities = 12/68 (17%), Positives = 24/68 (35%)
Query: 293 INTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEE 352
+ W + + FD T+ + + + IY+ ++ + E+
Sbjct: 207 LVQAWKSKKSPMGFSYDTRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVG 266
Query: 353 GILFNGKG 360
G L N KG
Sbjct: 267 GPLTNSKG 274
Score = 33.9 bits (77), Expect = 0.22
Identities = 12/68 (17%), Positives = 24/68 (35%)
Query: 503 INTEWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEE 562
+ W + + FD T+ + + + IY+ ++ + E+
Sbjct: 207 LVQAWKSKKSPMGFSYDTRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVG 266
Query: 563 GILFNGKG 570
G L N KG
Sbjct: 267 GPLTNSKG 274
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 32.3 bits (74), Expect = 0.47
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 35 GTETGKFLALDLGGTNFRV-LMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLEN 93
+ + +D+GGT + ++ K E P +P+ E + + +A +
Sbjct: 8 SHKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVP-TPQ--PATPESVAEAVALVVAE 64
Query: 94 FVREQKAENEHLPLGFTFSFPVD 116
+A P+G TF +
Sbjct: 65 LSARPEAPAAGSPVGVTFPGIIQ 87
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 32.6 bits (75), Expect = 0.54
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 213 GVVGANVVELLQQALVRRSNFPVNVVAIL 241
G VG NV+ ++ + RRS F + VV +
Sbjct: 13 GNVGLNVLRIIDASNRRRSAFSIKVVGVS 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.6 bits (69), Expect = 0.78
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 632 EDESNEMKDN---EKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSEESAKVKKLL 688
++E +K+ + R E E + ++ EK Q + N+ E ++ K
Sbjct: 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK 78
Query: 689 MDKEKLIKETVLNETLLAYTDACRKIFEETK 719
+ E +KE +N+ L + ++ + +
Sbjct: 79 IQLEAKVKE--MNKRLEDEEEMNAELTAKKR 107
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.0 bits (73), Expect = 0.85
Identities = 19/195 (9%), Positives = 59/195 (30%), Gaps = 36/195 (18%)
Query: 619 SKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISN--INR 676
++ + N S+ + + ++ + ++ + + ++ I+
Sbjct: 70 VLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNK------LVELMRIISRNGDTSYKIDG 123
Query: 677 KSEESAKVKKLLMDKEKLIKETV-------LNETLLAYTDACRKIFEETKDQWRR----- 724
K+ L ++ LIK + + ++FEE +
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYE 183
Query: 725 -------TIREAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLAKLDKVK 777
+ ++ + R H +LKTY+ + + Y+ + +
Sbjct: 184 ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYD---------EAE 234
Query: 778 EILDIVLHQHSDLLR 792
+++ ++ L
Sbjct: 235 GRFEVINNETEQLKA 249
Score = 31.2 bits (71), Expect = 1.7
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 10/134 (7%)
Query: 599 SQLIETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIP 658
Q QI + + + S S K E+ ++ + + E +
Sbjct: 150 FQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKI-EKLSKSATESIKNRRRIHG 208
Query: 659 EKKITQKVMNQAISNINRKSE-ESAKVKKLLMDKEKLIKETVLNETLLAYTDACRKIFEE 717
E K + + + R S + A+ + +++ E E L A F +
Sbjct: 209 ELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNET--------EQLKAEEKKILNQFLK 260
Query: 718 TKDQWRRTIREAFN 731
K + + + F+
Sbjct: 261 IKKKRKELFEKTFD 274
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation,
inhibitor, TETR intermediate, ligase, nucleus,
phosphoprotein; HET: VMX; 2.61A {Homo sapiens}
Length = 115
Score = 30.3 bits (68), Expect = 0.87
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 620 KESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIPEKKITQKVMNQAISNINRKSE 679
S+ + + + M D E + E+ + + I KV+ Q S I+ K +
Sbjct: 2 GSSHHHHHHSSGLVPRSHMSDQEAKPSTEDLGDKKE---GEYIKLKVIGQDSSEIHFKVK 58
Query: 680 ESAKVKKL 687
+ +KKL
Sbjct: 59 MTTHLKKL 66
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 30.5 bits (69), Expect = 2.1
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 36 TETGKFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENF 94
E LA+D+GG++ ++ + GE+ ++E S + MT G ++ + ++
Sbjct: 3 AEDQTVLAIDIGGSHVKIGLSTDGEERKVE------SGKTMT--GPEMVAAVTAMAKDM 53
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 30.7 bits (70), Expect = 2.1
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 213 GVVGANVVELLQ-QALVRRSNFPVNVVAIL 241
G VG N++ +++ R NVV +
Sbjct: 15 GNVGLNLLRIIRSFNEENRLGLKFNVVFVA 44
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 30.6 bits (69), Expect = 2.6
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 41 FLALDLGGTNFRV-LMIYAGEKFRMEHKTYPISPEIMTGPG------EQLFDYIAESLEN 93
+ +DLG T +V L G + + G ++ + L
Sbjct: 8 TIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEI----DGIRRLDAPDTGRWLLDVLSR 63
Query: 94 FVREQ 98
+
Sbjct: 64 YADHP 68
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding,
complex of two elongation factors; 3.00A {Thermus
thermophilus} SCOP: a.5.2.2 d.43.1.1
Length = 196
Score = 29.7 bits (67), Expect = 2.8
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 252 AYDHKHCKIGVIVGTGFNACYVERTENVSTFENE------ANKPFVVINTEWGAFGDDGA 305
Y H + ++GV+V +V R E + P V
Sbjct: 62 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYV---------SAEE 112
Query: 306 LDFLLTEFDRTI-DDRSLNRGQ--QIYEKMVSGMYMGEIVRLMMEKFTEEGIL 355
+ E +R I +LN G+ QI EK+ G ++K+ EE +L
Sbjct: 113 IPAEELEKERQIYIQAALNEGKPQQIAEKIAEG---------RLKKYLEEVVL 156
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 29.0 bits (64), Expect = 3.2
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 141 TDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQALVRRCGISNVLLCSSSTTISKC 200
P+++ + V C+ E +A + + S V +C S+
Sbjct: 8 KQSPMLVAYDNAV------NLSCKYSYNLFSREF--RASLHKGLDSAVEVCVVYGNYSQQ 59
Query: 201 VLVRWTKGFKCEGVVGANVVELLQQAL 227
+ V GF C+G +G V Q L
Sbjct: 60 LQVYSKTGFNCDGKLGNESVTFYLQNL 86
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding,
transferase; HET: MSE BGC; 2.20A {Escherichia coli}
SCOP: c.55.1.7 PDB: 1q18_A*
Length = 332
Score = 29.7 bits (66), Expect = 3.8
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 30 QDLPQGTETGKFLALDLGGTNFRVLMIYAGEKFRMEH-KTYPISPEIMTGPGEQLFDYIA 88
T L D+GGTN R L + + KTY + +
Sbjct: 5 HHHHHHGSTKYALVGDVGGTNAR-LALCDIASGEISQAKTYSGLD----------YPSLE 53
Query: 89 ESLENFVREQKAENEHLPLG 108
+ ++ E K E + +
Sbjct: 54 AVIRVYLEEHKVEVKDGCIA 73
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 29.0 bits (66), Expect = 4.7
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 13/40 (32%)
Query: 64 MEHKTYPIS-----PE-IMTGPGEQLFDYIAESLENFVRE 97
+ H+ YPI PE + T G ++ L NF+
Sbjct: 162 IHHEEYPIYGVQFHPESVGTSLGYKI-------LYNFLNR 194
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 29.5 bits (67), Expect = 4.9
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 213 GVVGANVVELLQQ---ALVRRSNFPVNVVAIL 241
G VG + +L++ + RR+ + VV
Sbjct: 19 GTVGGGTLTVLRRNAEEITRRAGREIRVVRAA 50
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle,
dimanganese CLU flavoprotein, oxidoreductase; HET: FMN;
1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Length = 153
Score = 28.5 bits (63), Expect = 5.2
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 270 ACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRG 325
R + ++P+++I +G G GA+ + F +R+L RG
Sbjct: 42 GLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRG 97
Score = 28.5 bits (63), Expect = 5.2
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 480 ACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRSLNRG 535
R + ++P+++I +G G GA+ + F +R+L RG
Sbjct: 42 GLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRG 97
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 29.4 bits (67), Expect = 5.4
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 213 GVVGANVVELLQ--QALVRRSNFPVNVVAIL 241
G VG+ L+ + + +L
Sbjct: 12 GTVGSAFYNLVLERAEELSAFGVVPRFLGVL 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,559,510
Number of extensions: 781245
Number of successful extensions: 1740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 78
Length of query: 828
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 726
Effective length of database: 3,853,851
Effective search space: 2797895826
Effective search space used: 2797895826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.0 bits)