RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4666
(828 letters)
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 237
Score = 251 bits (643), Expect = 1e-78
Identities = 91/210 (43%), Positives = 129/210 (61%), Gaps = 1/210 (0%)
Query: 258 CKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTI 317
C +G+IVGTG N Y+E + V + +P VVINTEWGAFG+ G LD T+FD+++
Sbjct: 2 CAVGLIVGTGTNVAYIEDSSKVELMDG-VKEPEVVINTEWGAFGEKGELDCWRTQFDKSM 60
Query: 318 DDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIST 377
D SL+ G+Q+YEKMVSGMY+GE+VR ++ E+ ILF G +L R T Y++
Sbjct: 61 DIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTD 120
Query: 378 IEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRMD 437
+E + +L L +P D VRY C +V +R+A+LA AGIA +L R++
Sbjct: 121 VERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRIN 180
Query: 438 FSIVTVGVDGSVYRYHPYFHHMMLEKIPAL 467
S VTVGVDGS+Y++HP F M + + L
Sbjct: 181 RSEVTVGVDGSLYKFHPKFCERMTDMVDKL 210
Score = 163 bits (415), Expect = 2e-46
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 472 VIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDRS 531
+IVGTG N Y+E + V + +P VVINTEWGAFG+ G LD T+FD+++D S
Sbjct: 6 LIVGTGTNVAYIEDSSKVELMDG-VKEPEVVINTEWGAFGEKGELDCWRTQFDKSMDIDS 64
Query: 532 LNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
L+ G+Q+YEKMVSGMY+GE+VR ++ E+ ILF G +L R T Y++ +E
Sbjct: 65 LHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVER 123
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 240 bits (613), Expect = 5e-74
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 7/216 (3%)
Query: 258 CKIGVIVGTGFNACYVERTENVSTFENEANKPF-----VVINTEWGAFGDDGALDFLLTE 312
K+GVI GTG N Y + ++ + + + + IN E+G+F D+ + T+
Sbjct: 2 TKMGVIFGTGVNGAYYDVCSDIEKLQGKLSDDIPPSAPMAINCEYGSF-DNEHVVLPRTK 60
Query: 313 FDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDT 372
+D TID+ S GQQ +EKM SG Y+GEI+RL + ++G +F + + + DT
Sbjct: 61 YDITIDEESPRPGQQTFEKMSSGYYLGEILRLALMDMYKQGFIFKNQDLSKFDKPFVMDT 120
Query: 373 MYISTIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATL 432
Y + IE ++ ++ + + T Q+ +R L ++ R+A L+ GIA +
Sbjct: 121 SYPARIEEDPFENLEDTDDLFQNEFGI-NTTVQERKLIRRLSELIGARAARLSVCGIAAI 179
Query: 433 LNRMDFSIVTVGVDGSVYRYHPYFHHMMLEKIPALI 468
+ + + DGSVY +P F + +
Sbjct: 180 CQKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIY 215
Score = 155 bits (394), Expect = 2e-43
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPF-----VVINTEWGAFGDDGALDFLLTEFDR 525
VI GTG N Y + ++ + + + + IN E+G+F D+ + T++D
Sbjct: 5 GVIFGTGVNGAYYDVCSDIEKLQGKLSDDIPPSAPMAINCEYGSF-DNEHVVLPRTKYDI 63
Query: 526 TIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYI 585
TID+ S GQQ +EKM SG Y+GEI+RL + ++G +F + + + DT Y
Sbjct: 64 TIDEESPRPGQQTFEKMSSGYYLGEILRLALMDMYKQGFIFKNQDLSKFDKPFVMDTSYP 123
Query: 586 STIEA 590
+ IE
Sbjct: 124 ARIEE 128
>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 243
Score = 237 bits (605), Expect = 5e-73
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 257 HCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRT 316
C++G+IVGTG NACY+E +NV E + + + +NTEWGAFGD G LD L E+DR
Sbjct: 1 QCEVGMIVGTGCNACYMEEMQNVELVEGDEGR--MCVNTEWGAFGDSGELDEFLLEYDRL 58
Query: 317 IDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIS 376
+D+ S N GQQ+YEK++ G YMGE+VRL++ + +E +LF+G+ S QL TRG F+T ++S
Sbjct: 59 VDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVS 118
Query: 377 TIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM 436
+E +D GD N+L L L + DC VR C VS R+AH+ SAG+A ++NRM
Sbjct: 119 QVE-SDTGDRKQIYNIL-STLGLR-PSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRM 175
Query: 437 ------DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV 474
D +TVGVDGSVY+ HP F + L I
Sbjct: 176 RESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEIT 219
Score = 164 bits (416), Expect = 2e-46
Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+IVGTG NACY+E +NV E + + + +NTEWGAFGD G LD L E+DR +D+
Sbjct: 5 GMIVGTGCNACYMEEMQNVELVEGDEGR--MCVNTEWGAFGDSGELDEFLLEYDRLVDES 62
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
S N GQQ+YEK++ G YMGE+VRL++ + +E +LF+G+ S QL TRG F+T ++S +E+
Sbjct: 63 SANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVES 122
Query: 591 ADVVNDNSSQLIETQIRTLKSSQFHLVQ 618
++ T ++ +V+
Sbjct: 123 DTGDRKQIYNILSTLGLRPSTTDCDIVR 150
>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 236 bits (603), Expect = 8e-73
Identities = 97/223 (43%), Positives = 146/223 (65%), Gaps = 11/223 (4%)
Query: 258 CKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTI 317
C++G+IVGTG NACY+E +NV E + + + IN EWGAFGD+G LD + T +DR +
Sbjct: 2 CEVGLIVGTGSNACYMEEMKNVEMVEGDQGQ--MCINMEWGAFGDNGCLDDIRTHYDRLV 59
Query: 318 DDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIST 377
D+ SLN G+Q YEKM+SGMY+GEIVR ++ FT++G LF G+ S L TRGIF+T ++S
Sbjct: 60 DEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQ 119
Query: 378 IEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM- 436
IE+ + + + + Q+L L +T D I V+ +C VVS+R+A L AG+A +++++
Sbjct: 120 IESDRLALLQV--RAILQQLGLN-STCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIR 176
Query: 437 -----DFSIVTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV 474
D VTVGVDG++Y+ HP+F +M + + L +
Sbjct: 177 ENRGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVS 219
Score = 163 bits (415), Expect = 2e-46
Identities = 64/134 (47%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+IVGTG NACY+E +NV E + + + IN EWGAFGD+G LD + T +DR +D+
Sbjct: 5 GLIVGTGSNACYMEEMKNVEMVEGDQGQ--MCINMEWGAFGDNGCLDDIRTHYDRLVDEY 62
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
SLN G+Q YEKM+SGMY+GEIVR ++ FT++G LF G+ S L TRGIF+T ++S IE+
Sbjct: 63 SLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIES 122
Query: 591 ADVVNDNSSQLIET 604
+ +++
Sbjct: 123 DRLALLQVRAILQQ 136
>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 231 bits (590), Expect = 6e-71
Identities = 95/224 (42%), Positives = 146/224 (65%), Gaps = 11/224 (4%)
Query: 257 HCKIGVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRT 316
HC++G+I+GTG NACY+E ++ E + + + INTEWGAFGDDG+L+ + TEFDR
Sbjct: 1 HCEVGLIIGTGTNACYMEELRHIDLVEGDEGR--MCINTEWGAFGDDGSLEDIRTEFDRA 58
Query: 317 IDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYIS 376
ID SLN G+Q++EKMVSGMY+GE+VRL++ K +EG+LF G+ + +L TRG F+T +S
Sbjct: 59 IDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVS 118
Query: 377 TIEAADVGDISICRNVLYQRLALPHATAQDCIDVRYLCRVVSQRSAHLASAGIATLLNRM 436
IE + + + +L RL + + DC+ V+++C +VS RSA+L +A + +LNR+
Sbjct: 119 AIE-KNKEGLHNAKEIL-TRLGVE-PSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRL 175
Query: 437 DFSI------VTVGVDGSVYRYHPYFHHMMLEKIPALISHSVIV 474
+ TVGVDGS+Y+ HP + + + L+ S +
Sbjct: 176 RDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVR 219
Score = 160 bits (405), Expect = 5e-45
Identities = 64/133 (48%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 471 SVIVGTGFNACYVERTENVSTFENEANKPFVVINTEWGAFGDDGALDFLLTEFDRTIDDR 530
+I+GTG NACY+E ++ E + + + INTEWGAFGDDG+L+ + TEFDR ID
Sbjct: 5 GLIIGTGTNACYMEELRHIDLVEGDEGR--MCINTEWGAFGDDGSLEDIRTEFDRAIDAY 62
Query: 531 SLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRGIFDTMYISTIEA 590
SLN G+Q++EKMVSGMY+GE+VRL++ K +EG+LF G+ + +L TRG F+T +S IE
Sbjct: 63 SLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEK 122
Query: 591 ADVVNDNSSQLIE 603
N+ +++
Sbjct: 123 NKEGLHNAKEILT 135
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 205
Score = 192 bits (489), Expect = 4e-57
Identities = 86/262 (32%), Positives = 126/262 (48%), Gaps = 84/262 (32%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
M R+ ++D+GL +TH A+VK PT+++ P+G+E G FL+LDLGGTNFRV+++ GE
Sbjct: 21 MRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVKVGE 80
Query: 61 ------KFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFP 114
+ +H+ Y I + MTG E LFDYI+E + +F+ + + +++ LPLGFTFSFP
Sbjct: 81 GEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFSFP 140
Query: 115 VDMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVEL 174
V + K G+L+ WTK
Sbjct: 141 VRHEDIDK-----------------------------GILLNWTK--------------- 156
Query: 175 LQQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFP 234
GFK G G NVV LL+ A+ RR +F
Sbjct: 157 ---------------------------------GFKASGAEGNNVVGLLRDAIKRRGDFE 183
Query: 235 VNVVAILNDTAGCLVSCAY-DH 255
++VVA++NDT ++SC Y DH
Sbjct: 184 MDVVAMVNDTVATMISCYYEDH 205
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 190 bits (485), Expect = 1e-56
Identities = 84/258 (32%), Positives = 112/258 (43%), Gaps = 81/258 (31%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIY--- 57
R+ + GL K T+ +++K FP+++ P GTETG FLALDLGGTN+RVL +
Sbjct: 28 CDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNFLALDLGGTNYRVLSVTLEG 87
Query: 58 AGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVDM 117
G+ R++ +TY I E M+G G +LF YIAE+L +F+ +++ LGFTFSFP
Sbjct: 88 KGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKDKKFDLGFTFSFPCVQ 147
Query: 118 MSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQQ 177
LT LVRWTKGF +GV G NV ELLQ
Sbjct: 148 KGLTH-----------------------------ATLVRWTKGFSADGVEGHNVAELLQT 178
Query: 178 ALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNV 237
L +R V
Sbjct: 179 ELDKR-------------------------------------------------ELNVKC 189
Query: 238 VAILNDTAGCLVSCAYDH 255
VA++NDT G L SCA +
Sbjct: 190 VAVVNDTVGTLASCALED 207
>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 187 bits (476), Expect = 3e-55
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 81/260 (31%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
M+R ++ GL +D + TATVK PTF++ +P G+E G F+ALDLGG++FR+L +
Sbjct: 25 MTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNH 84
Query: 61 K----FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVD 116
+ ME + Y I+ G G QLFD++AE L +F+ ++K +++ LP+GFTFSFP
Sbjct: 85 EKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVGFTFSFPCQ 144
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
+ + +L+ WTK FK GV GA+VV+LL
Sbjct: 145 QSKIDE-----------------------------AILITWTKRFKASGVEGADVVKLLN 175
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
+A+ +R ++ N
Sbjct: 176 KAIKKRG------------------------------------------------DYDAN 187
Query: 237 VVAILNDTAGCLVSCAYDHK 256
+VA++NDT G +++C YD +
Sbjct: 188 IVAVVNDTVGTMMTCGYDDQ 207
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 185 bits (472), Expect = 9e-55
Identities = 85/259 (32%), Positives = 115/259 (44%), Gaps = 81/259 (31%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMIYAGE 60
R+ A+++ GL K TH A VK P+F++ P GTE G FLALDLGGTNFRVL++
Sbjct: 23 KKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRS 82
Query: 61 K----FRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAENEHLPLGFTFSFPVD 116
M +K Y I EIM G GE+LFD+I + +F+ + +PLGFTFSFP
Sbjct: 83 GKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIKGPRMPLGFTFSFPCQ 142
Query: 117 MMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELLQ 176
SL G+L+ WTK
Sbjct: 143 QTSLDA-----------------------------GILITWTK----------------- 156
Query: 177 QALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN 236
GFK VG +VV LL+ A+ RR F ++
Sbjct: 157 -------------------------------GFKATDCVGHDVVTLLRDAIKRREEFDLD 185
Query: 237 VVAILNDTAGCLVSCAYDH 255
VVA++NDT G +++CAY+
Sbjct: 186 VVAVVNDTVGTMMTCAYEE 204
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 163 bits (415), Expect = 7e-47
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 86/260 (33%)
Query: 1 MSRLNADIDKGLHKDTHATATVKCFPTFIQDLPQGTETGKFLALDLGGTNFRVLMI--YA 58
++++KGL K + P ++ D P G E+G FLA+DLGGTN RV+++
Sbjct: 28 TKHFISELEKGLSKKGG---NIPMIPGWVMDFPTGKESGDFLAIDLGGTNLRVVLVKLGG 84
Query: 59 GEKFRMEHKTYPISPEIMTGP-GEQLFDYIAESLENFVREQKAE--NEHLPLGFTFSFPV 115
F Y + + T ++L+++IA+SL+ F+ EQ + +E +PLGFTFSFP
Sbjct: 85 DRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFTFSFPA 144
Query: 116 DMMSLTKVRVLLFRNVSANAKFYTYTDHPLVLFHSPGVLVRWTKGFKCEGVVGANVVELL 175
+ + G+L RWTKGF + +VV +L
Sbjct: 145 SQNKINE-----------------------------GILQRWTKGFDIPNIENHDVVPML 175
Query: 176 QQALVRRCGISNVLLCSSSTTISKCVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPV 235
Q+ + +R N P+
Sbjct: 176 QKQITKR-------------------------------------------------NIPI 186
Query: 236 NVVAILNDTAGCLVSCAYDH 255
VVA++NDT G LV+ Y
Sbjct: 187 EVVALINDTTGTLVASYYTD 206
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 128
Score = 31.8 bits (71), Expect = 0.12
Identities = 15/110 (13%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKA 100
FL++ LG + + G + ++ K + + + + +E F + A
Sbjct: 6 FLSMRLGRGYLTIALHELGGEVLIDTKIDIHEID-----QDDVLARLLFEIEEFFQTYAA 60
Query: 101 E-NEHLPLGFTFSFPVDMMSLTKVRV--LLFRNVSANAKFYTYTDHPLVL 147
+ + + T V+ +++ +N++ + Y T P+ +
Sbjct: 61 QLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFV 110
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 31.0 bits (68), Expect = 0.53
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 42 LALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKAE 101
L D+GGTN R+ + + KTY + + + ++ E K E
Sbjct: 4 LVGDVGGTNARLALCDIASGEISQAKTYSGLD----------YPSLEAVIRVYLEEHKVE 53
Query: 102 NEHLPLG 108
+ +
Sbjct: 54 VKDGCIA 60
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 29.4 bits (65), Expect = 0.67
Identities = 10/111 (9%), Positives = 26/111 (23%), Gaps = 9/111 (8%)
Query: 41 FLALDLGGTNFRV-LMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQK 99
L +++ L+ + E P E+ + + ++ +
Sbjct: 6 VLGIEVTRDEIAACLIDASMNILAHEAH-----PLPSQSDREETLNVMYRIIDRAKDMME 60
Query: 100 AENEHL-PLGFTFSFPVD--MMSLTKVRVLLFRNVSANAKFYTYTDHPLVL 147
L L P+D + R + + +
Sbjct: 61 KLGSKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYGIEVWV 111
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId:
562]}
Length = 129
Score = 28.8 bits (63), Expect = 1.1
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 36 TETGKFLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFV 95
TE +L+L + + + K +E + L D I ++ F
Sbjct: 1 TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-----LPLLDRIISHIDQFF 55
Query: 96 REQKAEN-EHLPLGFTFSFPVDM 117
+ + + T +D
Sbjct: 56 IRHQKKLERLTSIAITLPGIIDT 78
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 174
Score = 29.3 bits (65), Expect = 1.2
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 312 EFDRT--IDDRSLNR-GQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRG 368
E+D I DR++N G Y ++ F E IL NGK L
Sbjct: 6 EYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEP 65
Query: 369 IFDTMYISTIEAADVGDISI 388
+ ++S+
Sbjct: 66 RKYRFRVINASNTRTYNLSL 85
Score = 28.9 bits (64), Expect = 1.8
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 522 EFDRT--IDDRSLNR-GQQIYEKMVSGMYMGEIVRLMMEKFTEEGILFNGKGSHQLSTRG 578
E+D I DR++N G Y ++ F E IL NGK L
Sbjct: 6 EYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEP 65
Query: 579 IFDTMYISTIEAADVVN 595
+ N
Sbjct: 66 RKYRFRVINASNTRTYN 82
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 30.1 bits (67), Expect = 1.4
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 429 IATLLNRMDFS-IVTVGVDGSVYRYHPYFHHMMLEKIPALISHS 471
L++ M ++ D ++ + + L++ L++ S
Sbjct: 331 ARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNES 374
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 28.3 bits (62), Expect = 1.6
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 42 LALDLGGTNFRV-LMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKA 100
+ +D+GGT + ++ K E P E + + +A + +A
Sbjct: 5 IGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPA---TPESVAEAVALVVAELSARPEA 61
Query: 101 ENEHLPLGFTFSFPVDM 117
P+G TF +
Sbjct: 62 PAAGSPVGVTFPGIIQH 78
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 29.4 bits (66), Expect = 1.8
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 296 EWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGIL 355
W + + + FD T+ + + + IY+ + ++ + E+ G L
Sbjct: 207 TWKSKKNPMGFSYDTRCFDSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPL 266
Query: 356 FNGKG----------SHQLSTR-GIFDTMYISTIEAADVGDISICR 390
N KG S L+T G T Y+ A + C
Sbjct: 267 TNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKASAACRAAKLQDCT 312
Score = 29.0 bits (65), Expect = 2.9
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 506 EWGAFGDDGALDFLLTEFDRTIDDRSLNRGQQIYEKMVSGMYMGEIVRLMMEKFTEEGIL 565
W + + + FD T+ + + + IY+ + ++ + E+ G L
Sbjct: 207 TWKSKKNPMGFSYDTRCFDSTVTENDIRVEESIYQCCDLAPEARQAIKSLTERLYIGGPL 266
Query: 566 FNGKG 570
N KG
Sbjct: 267 TNSKG 271
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 28.2 bits (62), Expect = 4.8
Identities = 33/267 (12%), Positives = 76/267 (28%), Gaps = 25/267 (9%)
Query: 541 KMVSGMYMGEIVRLMME--KFTEEGILFNGKGSHQLSTRGIFDTMYISTIEAADVVNDNS 598
Y + ++ + + GI F G H + D + V
Sbjct: 193 YFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHA-----VEDYIVSRYQMYVQVYFHPV 247
Query: 599 SQLIETQIRTLKSSQFHLVQSKESNSAANKCNNEDESNEMKDNEKQERLEEELETSPVIP 658
S+ +E + L L ++ E + ++ +L++ + ++
Sbjct: 248 SRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQ 307
Query: 659 EKKITQKVMNQAISNI-NRK------SEESAKVKKLLMDKEKLIKETVLNETLLAYTDAC 711
+ ++ RK + + +LI++ N ++
Sbjct: 308 WMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSS 367
Query: 712 RKIFEETKDQWRRTIREAFNRDLSMIRTQHNKLKTYREVNIYPFLRVLTPEEYEDIVLLA 771
+ + + +R + + L V+ P + L + D
Sbjct: 368 YDLPYDFYRP-----NKDRHRTQIELMQKDGSLVELATVS--PLVAALAGQSQGDERFYF 420
Query: 772 KLDKVKEILDIVLHQHSDLLRPNIQTF 798
KE+LD +H DL + F
Sbjct: 421 P----KEMLDQGNKKHYDLFDETYREF 443
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.4 bits (58), Expect = 4.8
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 757 RVLTPEEYEDIVLLAK--LDKVKEILDIVLHQHSD 789
V++ E+ + +DK + ++D+V +
Sbjct: 32 EVISQEDMNKVRDENDTVMDKARVLIDLVTGKGPK 66
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 26.0 bits (56), Expect = 8.8
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 41 FLALDLGGTNFRVLMIYAGEKFRMEHKTYPISPEIMTGPGEQLFDYIAESLENFVREQKA 100
+ D+GGT + + + + + E + D + E +E +
Sbjct: 2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYS-----AFLDAVCELVEEADQRFGV 56
Query: 101 ENEHLPLGFTFSFPVDMMSLTKVR--VLLFRNVSANAKFYTYTDHPLVL 147
+ +G + T V A D + L
Sbjct: 57 KG---SVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,006,176
Number of extensions: 143179
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 48
Length of query: 828
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 735
Effective length of database: 1,130,706
Effective search space: 831068910
Effective search space used: 831068910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)