Query psy4669
Match_columns 139
No_of_seqs 188 out of 1857
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:45:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145|consensus 99.9 4.7E-27 1E-31 208.8 9.6 130 1-132 68-198 (683)
2 TIGR00487 IF-2 translation ini 99.9 4.8E-22 1E-26 178.3 12.5 121 1-132 12-132 (587)
3 PRK05306 infB translation init 99.9 1.2E-21 2.7E-26 180.6 13.3 114 1-133 223-336 (787)
4 CHL00189 infB translation init 99.8 5.3E-21 1.1E-25 175.5 11.8 124 1-132 166-289 (742)
5 COG0532 InfB Translation initi 99.7 1.9E-18 4.1E-23 152.8 5.1 49 84-132 2-50 (509)
6 PRK04004 translation initiatio 99.1 6.2E-11 1.4E-15 106.8 5.2 48 84-131 3-50 (586)
7 TIGR00491 aIF-2 translation in 99.0 3E-10 6.4E-15 102.7 4.9 48 85-132 2-49 (590)
8 KOG1144|consensus 99.0 4E-10 8.7E-15 104.2 3.7 49 82-130 470-518 (1064)
9 COG1116 TauB ABC-type nitrate/ 99.0 5.7E-10 1.2E-14 91.7 4.2 43 78-122 20-62 (248)
10 COG1120 FepC ABC-type cobalami 98.9 8.8E-10 1.9E-14 91.0 4.1 43 78-122 19-61 (258)
11 COG3842 PotA ABC-type spermidi 98.9 9.7E-10 2.1E-14 94.2 4.1 43 78-122 22-64 (352)
12 COG1126 GlnQ ABC-type polar am 98.9 2.1E-09 4.6E-14 87.6 4.4 42 78-121 19-60 (240)
13 COG1136 SalX ABC-type antimicr 98.9 2.4E-09 5.1E-14 87.0 4.2 43 77-121 21-63 (226)
14 TIGR01166 cbiO cobalt transpor 98.8 5.9E-09 1.3E-13 79.8 4.1 42 78-121 9-50 (190)
15 COG3839 MalK ABC-type sugar tr 98.8 5E-09 1.1E-13 89.4 4.0 42 78-121 20-61 (338)
16 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 5.8E-09 1.3E-13 81.1 3.8 42 78-121 21-62 (218)
17 cd03226 ABC_cobalt_CbiO_domain 98.8 6.9E-09 1.5E-13 80.3 3.9 42 78-121 17-58 (205)
18 cd03225 ABC_cobalt_CbiO_domain 98.8 7.3E-09 1.6E-13 80.2 4.0 42 78-121 18-59 (211)
19 cd03262 ABC_HisP_GlnQ_permease 98.7 9.2E-09 2E-13 79.6 4.3 42 78-121 17-58 (213)
20 TIGR00960 3a0501s02 Type II (G 98.7 7.5E-09 1.6E-13 80.6 3.8 42 78-121 20-61 (216)
21 cd03261 ABC_Org_Solvent_Resist 98.7 7.3E-09 1.6E-13 81.7 3.7 42 78-121 17-58 (235)
22 cd03257 ABC_NikE_OppD_transpor 98.7 1E-08 2.2E-13 80.0 4.4 42 78-121 22-63 (228)
23 TIGR02673 FtsE cell division A 98.7 9.9E-09 2.1E-13 79.6 4.2 42 78-121 19-60 (214)
24 cd03235 ABC_Metallic_Cations A 98.7 1.1E-08 2.4E-13 79.4 4.3 42 78-121 16-57 (213)
25 cd03259 ABC_Carb_Solutes_like 98.7 1E-08 2.2E-13 79.6 4.1 42 78-121 17-58 (213)
26 cd03218 ABC_YhbG The ABC trans 98.7 1.1E-08 2.4E-13 80.3 4.3 42 78-121 17-58 (232)
27 PRK15177 Vi polysaccharide exp 98.7 1E-08 2.2E-13 80.7 4.0 41 79-121 5-45 (213)
28 cd03219 ABC_Mj1267_LivG_branch 98.7 1.2E-08 2.5E-13 80.3 4.3 42 78-121 17-58 (236)
29 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 1.2E-08 2.6E-13 84.1 4.5 43 77-121 20-62 (254)
30 cd03265 ABC_DrrA DrrA is the A 98.7 1.1E-08 2.3E-13 80.0 4.0 42 78-121 17-58 (220)
31 cd03224 ABC_TM1139_LivF_branch 98.7 9.7E-09 2.1E-13 79.9 3.8 42 78-121 17-58 (222)
32 TIGR02211 LolD_lipo_ex lipopro 98.7 1.1E-08 2.4E-13 79.7 3.9 42 78-121 22-63 (221)
33 PF00005 ABC_tran: ABC transpo 98.7 6.8E-09 1.5E-13 74.8 2.4 41 79-121 3-43 (137)
34 cd03292 ABC_FtsE_transporter F 98.7 1.2E-08 2.5E-13 79.1 3.7 43 77-121 17-59 (214)
35 cd03263 ABC_subfamily_A The AB 98.7 1.3E-08 2.9E-13 79.2 4.0 42 78-121 19-60 (220)
36 cd03268 ABC_BcrA_bacitracin_re 98.7 1.3E-08 2.8E-13 78.8 3.8 42 78-121 17-58 (208)
37 cd03256 ABC_PhnC_transporter A 98.7 1.4E-08 3.1E-13 79.9 4.1 42 78-121 18-59 (241)
38 TIGR02315 ABC_phnC phosphonate 98.7 1.5E-08 3.2E-13 80.1 4.2 42 78-121 19-60 (243)
39 cd03258 ABC_MetN_methionine_tr 98.7 1.6E-08 3.4E-13 79.6 4.2 42 78-121 22-63 (233)
40 cd03293 ABC_NrtD_SsuB_transpor 98.7 1.4E-08 3E-13 79.4 3.9 42 78-121 21-62 (220)
41 cd03269 ABC_putative_ATPase Th 98.7 1.2E-08 2.7E-13 79.0 3.6 42 78-121 17-58 (210)
42 TIGR03410 urea_trans_UrtE urea 98.7 1.6E-08 3.5E-13 79.4 4.3 42 78-121 17-58 (230)
43 TIGR03608 L_ocin_972_ABC putat 98.7 1.5E-08 3.2E-13 78.1 3.9 42 78-121 15-56 (206)
44 cd03301 ABC_MalK_N The N-termi 98.7 1.6E-08 3.4E-13 78.5 3.9 42 78-121 17-58 (213)
45 cd03266 ABC_NatA_sodium_export 98.7 1.6E-08 3.5E-13 78.6 4.0 42 78-121 22-63 (218)
46 PRK10584 putative ABC transpor 98.7 1.6E-08 3.4E-13 79.3 3.9 42 78-121 27-68 (228)
47 cd03215 ABC_Carb_Monos_II This 98.7 1.9E-08 4.1E-13 76.9 4.1 42 78-121 17-58 (182)
48 PRK10908 cell division protein 98.7 1.7E-08 3.7E-13 79.0 3.9 42 78-121 19-60 (222)
49 PRK13538 cytochrome c biogenes 98.7 2.1E-08 4.5E-13 77.8 4.2 42 78-121 18-59 (204)
50 PRK11629 lolD lipoprotein tran 98.7 1.5E-08 3.3E-13 80.0 3.5 42 78-121 26-67 (233)
51 cd03229 ABC_Class3 This class 98.7 1.8E-08 3.8E-13 76.8 3.8 42 78-121 17-58 (178)
52 PRK10895 lipopolysaccharide AB 98.7 1.8E-08 3.9E-13 79.8 3.9 42 78-121 20-61 (241)
53 PRK13540 cytochrome c biogenes 98.7 1.8E-08 4E-13 77.9 3.8 42 78-121 18-59 (200)
54 PRK13539 cytochrome c biogenes 98.7 2E-08 4.3E-13 78.2 4.0 42 78-121 19-60 (207)
55 TIGR01184 ntrCD nitrate transp 98.7 2.1E-08 4.6E-13 79.4 4.2 41 79-121 3-43 (230)
56 PRK11248 tauB taurine transpor 98.7 1.8E-08 4E-13 81.2 3.9 42 78-121 18-59 (255)
57 TIGR01189 ccmA heme ABC export 98.7 2E-08 4.3E-13 77.5 3.8 42 78-121 17-58 (198)
58 cd03296 ABC_CysA_sulfate_impor 98.7 1.9E-08 4.1E-13 79.7 3.9 42 78-121 19-60 (239)
59 TIGR01188 drrA daunorubicin re 98.7 1.8E-08 3.9E-13 83.1 3.9 42 78-121 10-51 (302)
60 TIGR02324 CP_lyasePhnL phospho 98.7 2.2E-08 4.8E-13 78.3 4.2 43 78-122 25-67 (224)
61 PF04760 IF2_N: Translation in 98.7 9.7E-09 2.1E-13 65.4 1.7 50 1-53 4-54 (54)
62 cd03223 ABCD_peroxisomal_ALDP 98.7 2.4E-08 5.3E-13 75.6 4.2 43 78-122 18-60 (166)
63 cd03260 ABC_PstB_phosphate_tra 98.7 1.6E-08 3.5E-13 79.2 3.2 42 78-121 17-63 (227)
64 cd03254 ABCC_Glucan_exporter_l 98.7 2.3E-08 5.1E-13 78.3 4.1 43 77-121 19-61 (229)
65 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 2.3E-08 5.1E-13 78.8 4.1 43 78-122 20-62 (238)
66 cd03245 ABCC_bacteriocin_expor 98.7 2.4E-08 5.2E-13 77.8 4.1 43 77-121 20-62 (220)
67 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 2.1E-08 4.5E-13 79.3 3.7 42 78-121 18-59 (236)
68 cd03298 ABC_ThiQ_thiamine_tran 98.6 2.4E-08 5.3E-13 77.4 4.0 41 79-121 16-56 (211)
69 cd03250 ABCC_MRP_domain1 Domai 98.6 2.5E-08 5.4E-13 77.1 4.0 43 78-122 22-64 (204)
70 cd03231 ABC_CcmA_heme_exporter 98.6 2.8E-08 6E-13 77.1 4.3 42 78-121 17-58 (201)
71 cd03230 ABC_DR_subfamily_A Thi 98.6 2.4E-08 5.2E-13 75.8 3.8 42 78-121 17-58 (173)
72 PRK10247 putative ABC transpor 98.6 2.4E-08 5.2E-13 78.7 4.0 43 77-121 23-65 (225)
73 cd03216 ABC_Carb_Monos_I This 98.6 2.4E-08 5.1E-13 75.5 3.8 42 78-121 17-58 (163)
74 cd03246 ABCC_Protease_Secretio 98.6 2.1E-08 4.5E-13 76.1 3.4 42 78-121 19-60 (173)
75 cd03251 ABCC_MsbA MsbA is an e 98.6 2.4E-08 5.2E-13 78.4 3.9 43 78-122 19-61 (234)
76 PRK13638 cbiO cobalt transport 98.6 2.6E-08 5.6E-13 80.7 4.1 43 77-121 17-59 (271)
77 cd03264 ABC_drug_resistance_li 98.6 2.3E-08 4.9E-13 77.6 3.7 41 78-121 17-57 (211)
78 cd03228 ABCC_MRP_Like The MRP 98.6 2.6E-08 5.7E-13 75.4 3.9 43 77-121 18-60 (171)
79 PRK11124 artP arginine transpo 98.6 2.4E-08 5.3E-13 79.1 3.9 43 78-122 19-61 (242)
80 PRK09493 glnQ glutamine ABC tr 98.6 2.5E-08 5.4E-13 78.9 3.9 42 78-121 18-59 (240)
81 cd03295 ABC_OpuCA_Osmoprotecti 98.6 2.4E-08 5.2E-13 79.2 3.8 42 78-121 18-59 (242)
82 PRK14250 phosphate ABC transpo 98.6 2.7E-08 6E-13 79.1 4.0 42 78-121 20-61 (241)
83 TIGR03411 urea_trans_UrtD urea 98.6 2.7E-08 5.9E-13 78.6 4.0 42 78-121 19-60 (242)
84 cd03214 ABC_Iron-Siderophores_ 98.6 2.9E-08 6.2E-13 75.8 3.9 42 78-121 16-57 (180)
85 PRK11247 ssuB aliphatic sulfon 98.6 2.5E-08 5.4E-13 81.0 3.8 42 78-121 29-70 (257)
86 PRK11264 putative amino-acid A 98.6 3E-08 6.6E-13 78.7 4.2 43 77-121 19-61 (250)
87 cd03252 ABCC_Hemolysin The ABC 98.6 2.9E-08 6.2E-13 78.3 4.0 43 78-122 19-61 (237)
88 COG1127 Ttg2A ABC-type transpo 98.6 2.7E-08 5.9E-13 82.1 4.0 43 78-122 25-67 (263)
89 PRK11614 livF leucine/isoleuci 98.6 2.8E-08 6E-13 78.5 3.9 42 78-121 22-63 (237)
90 COG1131 CcmA ABC-type multidru 98.6 2.5E-08 5.5E-13 82.7 3.8 44 77-122 21-64 (293)
91 TIGR02323 CP_lyasePhnK phospho 98.6 3E-08 6.6E-13 79.0 4.1 42 78-121 20-61 (253)
92 TIGR03415 ABC_choXWV_ATP choli 98.6 3.3E-08 7.2E-13 85.2 4.5 81 3-122 3-83 (382)
93 PRK15112 antimicrobial peptide 98.6 3.1E-08 6.6E-13 80.2 4.1 42 78-121 30-71 (267)
94 cd03369 ABCC_NFT1 Domain 2 of 98.6 3.4E-08 7.4E-13 76.5 4.2 43 77-121 24-66 (207)
95 cd03290 ABCC_SUR1_N The SUR do 98.6 3E-08 6.6E-13 77.4 3.9 43 77-121 17-59 (218)
96 TIGR00972 3a0107s01c2 phosphat 98.6 3.1E-08 6.6E-13 78.8 3.9 43 78-122 18-65 (247)
97 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 3E-08 6.5E-13 73.8 3.6 43 78-122 17-59 (144)
98 TIGR02769 nickel_nikE nickel i 98.6 3.6E-08 7.8E-13 79.6 4.3 43 77-121 27-69 (265)
99 PRK13543 cytochrome c biogenes 98.6 3.5E-08 7.6E-13 77.2 4.1 43 78-122 28-70 (214)
100 PRK13649 cbiO cobalt transport 98.6 2.9E-08 6.2E-13 80.6 3.7 42 78-121 24-65 (280)
101 TIGR03005 ectoine_ehuA ectoine 98.6 3.1E-08 6.8E-13 79.0 3.8 42 78-121 17-58 (252)
102 PRK13646 cbiO cobalt transport 98.6 2.9E-08 6.3E-13 81.3 3.7 43 77-121 23-65 (286)
103 cd03267 ABC_NatA_like Similar 98.6 3.4E-08 7.4E-13 78.5 3.9 42 78-121 38-79 (236)
104 PRK13541 cytochrome c biogenes 98.6 3E-08 6.6E-13 76.4 3.5 41 80-122 19-59 (195)
105 cd03247 ABCC_cytochrome_bd The 98.6 3E-08 6.5E-13 75.4 3.5 42 78-121 19-60 (178)
106 TIGR01288 nodI ATP-binding ABC 98.6 3.3E-08 7.2E-13 81.5 4.0 42 78-121 21-62 (303)
107 PRK13645 cbiO cobalt transport 98.6 3.1E-08 6.6E-13 81.0 3.7 42 78-121 28-69 (289)
108 cd03253 ABCC_ATM1_transporter 98.6 3.4E-08 7.4E-13 77.7 3.9 43 78-122 18-60 (236)
109 cd03294 ABC_Pro_Gly_Bertaine T 98.6 3.3E-08 7.1E-13 80.2 3.8 42 78-121 41-82 (269)
110 PRK13637 cbiO cobalt transport 98.6 2.9E-08 6.2E-13 81.4 3.5 43 77-121 23-65 (287)
111 PRK15056 manganese/iron transp 98.6 3E-08 6.4E-13 80.5 3.6 42 78-121 24-65 (272)
112 PRK11650 ugpC glycerol-3-phosp 98.6 3E-08 6.5E-13 84.3 3.8 42 78-121 21-62 (356)
113 cd03244 ABCC_MRP_domain2 Domai 98.6 3.7E-08 8.1E-13 76.7 4.0 43 77-121 20-62 (221)
114 PRK14845 translation initiatio 98.6 2.3E-08 5E-13 95.5 3.3 42 88-133 466-507 (1049)
115 PRK11831 putative ABC transpor 98.6 3.1E-08 6.7E-13 80.2 3.7 42 78-121 24-65 (269)
116 TIGR03740 galliderm_ABC gallid 98.6 3.5E-08 7.6E-13 77.3 3.8 42 78-121 17-58 (223)
117 PRK10575 iron-hydroxamate tran 98.6 3.8E-08 8.3E-13 79.4 4.1 42 78-121 28-69 (265)
118 PRK11300 livG leucine/isoleuci 98.6 3.2E-08 7E-13 78.8 3.6 42 78-121 22-63 (255)
119 PRK13641 cbiO cobalt transport 98.6 3.2E-08 7E-13 81.1 3.7 43 77-121 23-65 (287)
120 PRK13644 cbiO cobalt transport 98.6 3.3E-08 7.1E-13 80.5 3.7 43 77-121 18-60 (274)
121 PRK13648 cbiO cobalt transport 98.6 3.4E-08 7.3E-13 79.9 3.7 42 78-121 26-67 (269)
122 PRK13548 hmuV hemin importer A 98.6 3.9E-08 8.5E-13 79.2 4.0 42 78-121 19-60 (258)
123 TIGR03873 F420-0_ABC_ATP propo 98.6 4E-08 8.6E-13 78.7 4.0 43 78-122 18-60 (256)
124 cd03248 ABCC_TAP TAP, the Tran 98.6 4E-08 8.7E-13 76.9 4.0 43 77-121 30-72 (226)
125 PRK13635 cbiO cobalt transport 98.6 3.3E-08 7.2E-13 80.8 3.6 42 78-121 24-65 (279)
126 TIGR01978 sufC FeS assembly AT 98.6 4.7E-08 1E-12 77.1 4.3 42 78-121 17-60 (243)
127 PRK13647 cbiO cobalt transport 98.6 3.3E-08 7.2E-13 80.5 3.5 42 78-121 22-63 (274)
128 TIGR02770 nickel_nikD nickel i 98.6 4.7E-08 1E-12 77.1 4.2 41 79-121 4-48 (230)
129 PRK13650 cbiO cobalt transport 98.6 3.7E-08 8E-13 80.4 3.7 42 78-121 24-65 (279)
130 PRK11701 phnK phosphonate C-P 98.6 4.2E-08 9.1E-13 78.6 3.9 42 78-121 23-64 (258)
131 PRK13537 nodulation ABC transp 98.6 4.2E-08 9.2E-13 81.4 3.9 42 78-121 24-65 (306)
132 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 4.2E-08 9E-13 77.5 3.6 42 78-121 39-80 (224)
133 TIGR02982 heterocyst_DevA ABC 98.6 4.5E-08 9.8E-13 76.6 3.8 42 78-121 22-63 (220)
134 PRK13651 cobalt transporter AT 98.6 4.1E-08 8.9E-13 81.7 3.7 44 77-122 23-66 (305)
135 PRK13643 cbiO cobalt transport 98.6 4.1E-08 8.9E-13 80.6 3.7 43 78-122 23-65 (288)
136 PRK10771 thiQ thiamine transpo 98.6 4.9E-08 1.1E-12 77.0 4.0 41 79-121 17-57 (232)
137 cd03233 ABC_PDR_domain1 The pl 98.6 4.1E-08 8.8E-13 76.5 3.5 42 78-121 24-68 (202)
138 PRK11231 fecE iron-dicitrate t 98.6 4.7E-08 1E-12 78.2 3.9 42 78-121 19-60 (255)
139 cd03297 ABC_ModC_molybdenum_tr 98.6 5.1E-08 1.1E-12 75.9 3.9 40 79-121 16-55 (214)
140 PRK13632 cbiO cobalt transport 98.6 4.5E-08 9.7E-13 79.4 3.7 42 78-121 26-67 (271)
141 PRK11153 metN DL-methionine tr 98.6 3.9E-08 8.5E-13 82.9 3.5 42 78-121 22-63 (343)
142 cd03222 ABC_RNaseL_inhibitor T 98.6 5.4E-08 1.2E-12 75.6 4.0 40 81-122 19-58 (177)
143 PRK10253 iron-enterobactin tra 98.6 5.8E-08 1.3E-12 78.4 4.3 42 78-121 24-65 (265)
144 cd03300 ABC_PotA_N PotA is an 98.6 5.7E-08 1.2E-12 76.7 4.2 43 77-121 16-58 (232)
145 PRK11432 fbpC ferric transport 98.6 4.3E-08 9.4E-13 83.3 3.7 42 78-121 23-64 (351)
146 PRK13633 cobalt transporter AT 98.6 5.1E-08 1.1E-12 79.5 3.9 43 77-121 26-68 (280)
147 TIGR03265 PhnT2 putative 2-ami 98.6 4E-08 8.8E-13 83.5 3.4 41 79-121 22-62 (353)
148 PRK09544 znuC high-affinity zi 98.6 4.3E-08 9.4E-13 79.1 3.4 42 78-121 21-62 (251)
149 PRK13639 cbiO cobalt transport 98.6 4.8E-08 1E-12 79.5 3.7 42 78-121 19-60 (275)
150 PRK13652 cbiO cobalt transport 98.6 4.5E-08 9.7E-13 79.7 3.5 43 77-121 20-62 (277)
151 PRK10619 histidine/lysine/argi 98.6 4.9E-08 1.1E-12 78.2 3.7 42 78-121 22-63 (257)
152 PRK13536 nodulation factor exp 98.6 4.8E-08 1E-12 82.6 3.8 43 77-121 57-99 (340)
153 PRK11000 maltose/maltodextrin 98.6 4.7E-08 1E-12 83.3 3.7 42 78-121 20-61 (369)
154 PRK14267 phosphate ABC transpo 98.6 5.7E-08 1.2E-12 77.4 4.0 43 77-121 20-67 (253)
155 COG0410 LivF ABC-type branched 98.6 5.8E-08 1.3E-12 79.4 3.9 43 78-122 20-62 (237)
156 TIGR02314 ABC_MetN D-methionin 98.6 5.2E-08 1.1E-12 82.7 3.8 42 78-121 22-63 (343)
157 cd03234 ABCG_White The White s 98.6 6.2E-08 1.3E-12 76.1 3.9 43 77-121 23-68 (226)
158 PRK10851 sulfate/thiosulfate t 98.6 5E-08 1.1E-12 82.9 3.6 42 78-121 19-60 (353)
159 TIGR03522 GldA_ABC_ATP gliding 98.5 4.6E-08 1E-12 80.7 3.3 42 78-121 19-60 (301)
160 PRK09452 potA putrescine/sperm 98.5 5.2E-08 1.1E-12 83.6 3.6 42 78-121 31-72 (375)
161 cd03213 ABCG_EPDR ABCG transpo 98.5 7E-08 1.5E-12 74.7 4.0 43 77-121 25-69 (194)
162 TIGR01277 thiQ thiamine ABC tr 98.5 6.3E-08 1.4E-12 75.5 3.7 42 78-121 15-56 (213)
163 PRK13642 cbiO cobalt transport 98.5 6E-08 1.3E-12 79.0 3.7 42 78-121 24-65 (277)
164 TIGR01186 proV glycine betaine 98.5 5.2E-08 1.1E-12 83.4 3.4 42 78-121 10-51 (363)
165 COG1117 PstB ABC-type phosphat 98.5 5.2E-08 1.1E-12 79.7 3.2 33 77-109 23-55 (253)
166 PRK13636 cbiO cobalt transport 98.5 6.7E-08 1.5E-12 79.0 3.8 42 78-121 23-64 (283)
167 PRK13634 cbiO cobalt transport 98.5 5.9E-08 1.3E-12 79.7 3.4 43 77-121 23-65 (290)
168 COG0411 LivG ABC-type branched 98.5 2.2E-08 4.7E-13 82.4 0.8 43 78-122 21-63 (250)
169 PRK13546 teichoic acids export 98.5 7.4E-08 1.6E-12 78.6 3.9 43 78-122 41-83 (264)
170 PRK13631 cbiO cobalt transport 98.5 6.8E-08 1.5E-12 80.9 3.7 44 77-122 42-85 (320)
171 PRK11144 modC molybdate transp 98.5 6.3E-08 1.4E-12 81.9 3.5 41 79-121 16-56 (352)
172 COG4525 TauB ABC-type taurine 98.5 8.8E-08 1.9E-12 78.0 4.1 44 78-123 22-65 (259)
173 PRK10419 nikE nickel transport 98.5 8.7E-08 1.9E-12 77.7 4.1 43 77-121 28-70 (268)
174 PRK14273 phosphate ABC transpo 98.5 8.8E-08 1.9E-12 76.5 4.0 42 78-121 24-70 (254)
175 PRK13640 cbiO cobalt transport 98.5 7.2E-08 1.6E-12 78.8 3.6 43 77-121 23-68 (282)
176 COG1134 TagH ABC-type polysacc 98.5 9.1E-08 2E-12 78.8 4.1 43 78-122 44-86 (249)
177 PRK13547 hmuV hemin importer A 98.5 8.8E-08 1.9E-12 78.3 4.1 37 78-116 18-54 (272)
178 PRK10418 nikD nickel transport 98.5 9.6E-08 2.1E-12 76.5 4.1 42 78-121 20-65 (254)
179 PRK14241 phosphate transporter 98.5 7.9E-08 1.7E-12 77.1 3.6 42 78-121 21-67 (258)
180 PRK11607 potG putrescine trans 98.5 6.9E-08 1.5E-12 82.8 3.5 42 78-121 36-77 (377)
181 TIGR00968 3a0106s01 sulfate AB 98.5 8.6E-08 1.9E-12 76.1 3.6 42 78-121 17-58 (237)
182 PRK10938 putative molybdenum t 98.5 9.8E-08 2.1E-12 83.0 4.3 42 78-121 20-61 (490)
183 cd03299 ABC_ModC_like Archeal 98.5 8.9E-08 1.9E-12 75.9 3.6 42 78-121 16-57 (235)
184 PRK14262 phosphate ABC transpo 98.5 8.8E-08 1.9E-12 76.2 3.6 42 78-121 20-66 (250)
185 CHL00131 ycf16 sulfate ABC tra 98.5 1.2E-07 2.6E-12 75.4 4.2 42 78-121 24-67 (252)
186 cd00267 ABC_ATPase ABC (ATP-bi 98.5 1.1E-07 2.3E-12 70.8 3.7 43 78-122 16-58 (157)
187 TIGR02142 modC_ABC molybdenum 98.5 8.3E-08 1.8E-12 81.1 3.5 41 79-121 15-55 (354)
188 PRK14247 phosphate ABC transpo 98.5 1.1E-07 2.4E-12 75.7 3.9 42 78-121 20-66 (250)
189 PRK10070 glycine betaine trans 98.5 7.8E-08 1.7E-12 83.3 3.3 41 79-121 46-86 (400)
190 TIGR03258 PhnT 2-aminoethylpho 98.5 9.3E-08 2E-12 81.6 3.7 42 78-121 22-65 (362)
191 PRK14242 phosphate transporter 98.5 9.7E-08 2.1E-12 76.1 3.5 32 78-109 23-54 (253)
192 PRK03695 vitamin B12-transport 98.5 1.2E-07 2.6E-12 75.9 4.1 41 78-121 13-53 (248)
193 PRK09580 sufC cysteine desulfu 98.5 1.3E-07 2.7E-12 74.9 4.1 42 78-121 18-61 (248)
194 COG1125 OpuBA ABC-type proline 98.5 9.7E-08 2.1E-12 79.9 3.6 43 77-121 17-59 (309)
195 COG1124 DppF ABC-type dipeptid 98.5 1.2E-07 2.7E-12 78.0 4.1 45 77-123 23-67 (252)
196 cd03232 ABC_PDR_domain2 The pl 98.5 1.2E-07 2.6E-12 73.1 3.9 44 78-121 24-67 (192)
197 COG1118 CysA ABC-type sulfate/ 98.5 1.3E-07 2.8E-12 80.6 4.3 43 79-123 20-62 (345)
198 PRK09700 D-allose transporter 98.5 1.2E-07 2.7E-12 82.9 4.2 44 77-122 279-322 (510)
199 PRK09700 D-allose transporter 98.5 1.1E-07 2.4E-12 83.2 3.9 42 78-121 22-63 (510)
200 cd03237 ABC_RNaseL_inhibitor_d 98.5 1.5E-07 3.3E-12 75.9 4.4 39 81-121 19-57 (246)
201 COG3638 ABC-type phosphate/pho 98.5 1.1E-07 2.4E-12 78.4 3.6 43 77-121 20-62 (258)
202 PRK14259 phosphate ABC transpo 98.5 1.2E-07 2.7E-12 76.8 3.8 42 78-121 30-76 (269)
203 cd03217 ABC_FeS_Assembly ABC-t 98.5 1.7E-07 3.6E-12 72.8 4.4 42 78-121 17-60 (200)
204 PRK14270 phosphate ABC transpo 98.5 1.3E-07 2.8E-12 75.4 3.8 42 78-121 21-67 (251)
205 PRK10744 pstB phosphate transp 98.5 1.2E-07 2.7E-12 76.1 3.7 42 78-121 30-76 (260)
206 PRK15064 ABC transporter ATP-b 98.5 1.4E-07 3E-12 83.1 4.3 42 78-121 18-59 (530)
207 PRK10762 D-ribose transporter 98.5 1.2E-07 2.6E-12 82.9 3.9 42 78-121 21-62 (501)
208 PRK14246 phosphate ABC transpo 98.5 1.4E-07 3.1E-12 76.1 3.9 41 78-120 27-67 (257)
209 PRK14272 phosphate ABC transpo 98.5 1.6E-07 3.5E-12 74.6 4.2 37 77-115 20-56 (252)
210 PRK14248 phosphate ABC transpo 98.5 1.3E-07 2.8E-12 76.4 3.6 43 77-121 37-84 (268)
211 PRK14235 phosphate transporter 98.5 9.7E-08 2.1E-12 77.3 2.9 42 78-121 36-82 (267)
212 cd03291 ABCC_CFTR1 The CFTR su 98.5 1.4E-07 3.1E-12 77.8 3.9 44 77-122 53-96 (282)
213 TIGR03771 anch_rpt_ABC anchore 98.5 1.7E-07 3.7E-12 73.8 4.2 37 83-121 2-38 (223)
214 PRK14240 phosphate transporter 98.5 1.4E-07 3.1E-12 75.0 3.7 42 78-121 20-66 (250)
215 PRK09536 btuD corrinoid ABC tr 98.5 1.1E-07 2.4E-12 82.4 3.4 42 78-121 20-61 (402)
216 PRK14268 phosphate ABC transpo 98.5 1.4E-07 3E-12 75.8 3.7 42 78-121 29-75 (258)
217 cd03288 ABCC_SUR2 The SUR doma 98.5 1.2E-07 2.7E-12 76.1 3.3 42 78-121 38-79 (257)
218 PRK10636 putative ABC transpor 98.5 2.5E-07 5.4E-12 83.9 5.6 43 78-122 329-371 (638)
219 PRK09984 phosphonate/organopho 98.4 1.6E-07 3.6E-12 75.4 3.9 42 78-121 21-65 (262)
220 PRK11147 ABC transporter ATPas 98.4 1.6E-07 3.4E-12 84.9 4.2 43 78-122 20-62 (635)
221 COG3840 ThiQ ABC-type thiamine 98.4 1.4E-07 3.1E-12 75.9 3.5 42 78-121 16-57 (231)
222 PRK14253 phosphate ABC transpo 98.4 1.5E-07 3.3E-12 74.8 3.6 36 77-114 19-54 (249)
223 PRK14244 phosphate ABC transpo 98.4 1.4E-07 3.1E-12 75.2 3.4 42 78-121 22-68 (251)
224 PRK10636 putative ABC transpor 98.4 1.8E-07 3.8E-12 84.8 4.3 43 78-122 18-60 (638)
225 PRK14238 phosphate transporter 98.4 1.4E-07 3E-12 76.6 3.3 42 78-121 41-87 (271)
226 PRK14251 phosphate ABC transpo 98.4 1.7E-07 3.7E-12 74.6 3.7 42 78-121 21-67 (251)
227 PRK11288 araG L-arabinose tran 98.4 1.9E-07 4.1E-12 81.7 4.3 42 78-121 270-311 (501)
228 PRK14249 phosphate ABC transpo 98.4 1.9E-07 4.1E-12 74.5 3.9 37 78-116 21-57 (251)
229 PRK10982 galactose/methyl gala 98.4 1.7E-07 3.6E-12 81.7 3.9 42 78-121 15-56 (491)
230 PRK11308 dppF dipeptide transp 98.4 1.7E-07 3.7E-12 78.8 3.8 43 77-121 31-73 (327)
231 PRK11819 putative ABC transpor 98.4 1.9E-07 4.1E-12 83.0 4.3 42 78-121 24-65 (556)
232 PRK15439 autoinducer 2 ABC tra 98.4 1.5E-07 3.3E-12 82.7 3.6 42 78-121 28-69 (510)
233 PRK14237 phosphate transporter 98.4 1.5E-07 3.3E-12 76.2 3.3 43 77-121 36-83 (267)
234 COG4133 CcmA ABC-type transpor 98.4 2E-07 4.3E-12 74.8 3.9 43 78-122 19-61 (209)
235 TIGR03269 met_CoM_red_A2 methy 98.4 1.6E-07 3.5E-12 82.3 3.6 43 78-122 301-343 (520)
236 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.2E-07 4.7E-12 82.4 4.5 43 78-122 22-64 (552)
237 PRK10982 galactose/methyl gala 98.4 1.9E-07 4.2E-12 81.3 4.0 43 77-121 264-306 (491)
238 PRK14256 phosphate ABC transpo 98.4 2E-07 4.3E-12 74.4 3.7 42 78-121 21-67 (252)
239 PRK14274 phosphate ABC transpo 98.4 1.4E-07 3.1E-12 75.6 2.9 42 78-121 29-75 (259)
240 cd03238 ABC_UvrA The excision 98.4 1.6E-07 3.4E-12 73.0 3.0 31 78-108 12-42 (176)
241 PRK14239 phosphate transporter 98.4 2.4E-07 5.1E-12 73.7 4.1 44 78-121 22-68 (252)
242 PRK15079 oligopeptide ABC tran 98.4 1.8E-07 3.9E-12 78.8 3.6 43 78-122 38-80 (331)
243 PRK11288 araG L-arabinose tran 98.4 2E-07 4.2E-12 81.6 3.9 42 78-121 21-62 (501)
244 PRK14243 phosphate transporter 98.4 2E-07 4.3E-12 75.3 3.6 42 78-121 27-73 (264)
245 COG4619 ABC-type uncharacteriz 98.4 2.2E-07 4.8E-12 74.2 3.7 43 78-122 20-62 (223)
246 PRK15439 autoinducer 2 ABC tra 98.4 2.3E-07 5E-12 81.5 4.2 43 77-121 279-321 (510)
247 PRK11147 ABC transporter ATPas 98.4 3.2E-07 6.9E-12 82.9 5.1 43 78-122 336-378 (635)
248 PRK15064 ABC transporter ATP-b 98.4 2.4E-07 5.2E-12 81.5 4.2 42 78-121 336-377 (530)
249 PLN03073 ABC transporter F fam 98.4 3.4E-07 7.3E-12 84.5 5.3 42 78-121 526-567 (718)
250 cd03236 ABC_RNaseL_inhibitor_d 98.4 3E-07 6.5E-12 74.7 4.4 40 79-121 19-58 (255)
251 PRK14254 phosphate ABC transpo 98.4 2.2E-07 4.7E-12 76.3 3.6 42 78-121 56-102 (285)
252 PRK14269 phosphate ABC transpo 98.4 2.3E-07 5E-12 73.9 3.6 42 78-121 19-63 (246)
253 PRK10762 D-ribose transporter 98.4 2.5E-07 5.5E-12 80.9 4.2 43 77-121 268-310 (501)
254 PRK14252 phosphate ABC transpo 98.4 2.3E-07 5E-12 74.8 3.6 42 78-121 33-79 (265)
255 PRK14258 phosphate ABC transpo 98.4 2.6E-07 5.5E-12 74.5 3.8 37 78-116 24-60 (261)
256 PRK14271 phosphate ABC transpo 98.4 2.5E-07 5.3E-12 75.6 3.8 42 78-121 38-84 (276)
257 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.8E-07 6E-12 81.7 4.3 43 78-122 339-381 (552)
258 PRK15093 antimicrobial peptide 98.4 2.4E-07 5.2E-12 77.7 3.7 43 77-121 23-69 (330)
259 PRK14263 phosphate ABC transpo 98.4 2.4E-07 5.3E-12 74.9 3.4 42 78-121 25-71 (261)
260 PRK13549 xylose transporter AT 98.4 2.9E-07 6.3E-12 80.6 4.1 43 77-121 278-321 (506)
261 TIGR02868 CydC thiol reductant 98.4 3E-07 6.5E-12 80.5 4.1 42 78-121 352-393 (529)
262 PRK14275 phosphate ABC transpo 98.4 2.6E-07 5.7E-12 75.7 3.4 42 78-121 56-102 (286)
263 PRK14255 phosphate ABC transpo 98.4 3.6E-07 7.8E-12 72.8 4.0 32 78-109 22-53 (252)
264 PRK14261 phosphate ABC transpo 98.4 3.1E-07 6.7E-12 73.3 3.6 32 78-109 23-54 (253)
265 TIGR03269 met_CoM_red_A2 methy 98.4 2.9E-07 6.3E-12 80.8 3.7 43 78-122 17-61 (520)
266 TIGR02633 xylG D-xylose ABC tr 98.4 3.3E-07 7.1E-12 80.0 3.9 42 78-121 18-61 (500)
267 TIGR02633 xylG D-xylose ABC tr 98.4 3.6E-07 7.8E-12 79.7 4.2 43 77-121 276-319 (500)
268 PRK09473 oppD oligopeptide tra 98.4 2.8E-07 6.1E-12 77.5 3.4 42 78-121 33-77 (330)
269 COG4559 ABC-type hemin transpo 98.4 4.2E-07 9E-12 74.6 4.2 44 77-122 17-60 (259)
270 PRK13549 xylose transporter AT 98.4 3.4E-07 7.3E-12 80.2 3.9 42 78-121 22-65 (506)
271 PRK11819 putative ABC transpor 98.4 3.6E-07 7.8E-12 81.2 4.1 43 78-122 341-383 (556)
272 PRK14260 phosphate ABC transpo 98.4 3.2E-07 7E-12 73.7 3.5 35 78-114 24-58 (259)
273 PRK10261 glutathione transport 98.3 3.2E-07 6.9E-12 82.8 3.7 42 78-121 341-382 (623)
274 PRK10261 glutathione transport 98.3 3.1E-07 6.6E-12 82.9 3.5 43 77-121 32-74 (623)
275 COG1135 AbcC ABC-type metal io 98.3 4.1E-07 9E-12 77.5 4.1 51 77-127 22-95 (339)
276 PRK14236 phosphate transporter 98.3 3.4E-07 7.3E-12 74.3 3.4 42 78-121 42-88 (272)
277 COG1122 CbiO ABC-type cobalt t 98.3 3.9E-07 8.4E-12 74.1 3.8 42 77-120 20-61 (235)
278 PRK10938 putative molybdenum t 98.3 4.1E-07 8.9E-12 79.2 4.1 42 78-121 277-319 (490)
279 PRK15134 microcin C ABC transp 98.3 3.6E-07 7.8E-12 80.5 3.8 42 78-121 26-72 (529)
280 PRK15134 microcin C ABC transp 98.3 4E-07 8.7E-12 80.1 4.1 41 78-121 303-343 (529)
281 PRK14265 phosphate ABC transpo 98.3 4.3E-07 9.2E-12 74.0 3.8 42 78-121 37-83 (274)
282 PRK11176 lipid transporter ATP 98.3 4.3E-07 9.3E-12 80.3 4.1 42 78-121 360-401 (582)
283 COG4136 ABC-type uncharacteriz 98.3 2.9E-07 6.2E-12 72.7 2.6 31 79-109 20-50 (213)
284 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 1.1E-06 2.5E-11 63.9 5.6 45 88-132 1-45 (168)
285 PRK11022 dppD dipeptide transp 98.3 3.9E-07 8.5E-12 76.5 3.5 36 77-114 23-58 (326)
286 PRK14245 phosphate ABC transpo 98.3 4.7E-07 1E-11 72.1 3.4 32 78-109 20-51 (250)
287 COG4604 CeuD ABC-type enteroch 98.3 5.1E-07 1.1E-11 73.5 3.4 43 78-122 18-60 (252)
288 PRK14266 phosphate ABC transpo 98.3 4.9E-07 1.1E-11 71.9 3.3 44 78-121 20-66 (250)
289 PRK14264 phosphate ABC transpo 98.3 5.4E-07 1.2E-11 74.6 3.6 43 77-121 61-108 (305)
290 cd03289 ABCC_CFTR2 The CFTR su 98.3 6.2E-07 1.3E-11 73.8 3.7 42 77-121 20-61 (275)
291 PRK10790 putative multidrug tr 98.3 7.6E-07 1.7E-11 79.1 4.1 43 77-121 357-399 (592)
292 TIGR02203 MsbA_lipidA lipid A 98.3 7.6E-07 1.6E-11 78.3 4.1 42 78-121 349-390 (571)
293 PRK10789 putative multidrug tr 98.3 8.6E-07 1.9E-11 78.8 4.3 43 77-121 331-373 (569)
294 COG4555 NatA ABC-type Na+ tran 98.3 5.1E-07 1.1E-11 73.6 2.5 43 77-121 18-60 (245)
295 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 7.7E-07 1.7E-11 80.5 4.0 43 77-121 469-511 (686)
296 PRK13545 tagH teichoic acids e 98.3 6.9E-07 1.5E-11 80.6 3.6 43 78-122 41-83 (549)
297 TIGR02857 CydD thiol reductant 98.3 8.7E-07 1.9E-11 77.6 4.2 43 77-121 338-380 (529)
298 PRK13657 cyclic beta-1,2-gluca 98.3 8.7E-07 1.9E-11 78.8 4.2 43 77-121 351-393 (588)
299 TIGR03796 NHPM_micro_ABC1 NHPM 98.2 8.9E-07 1.9E-11 80.3 4.2 44 77-122 495-538 (710)
300 TIGR02204 MsbA_rel ABC transpo 98.2 8.6E-07 1.9E-11 78.1 3.9 42 78-121 357-398 (576)
301 COG1129 MglA ABC-type sugar tr 98.2 9.6E-07 2.1E-11 78.9 4.0 45 77-123 24-68 (500)
302 COG4107 PhnK ABC-type phosphon 98.2 1.6E-06 3.4E-11 70.0 4.7 46 77-124 22-67 (258)
303 PRK10522 multidrug transporter 98.2 1E-06 2.2E-11 77.9 4.0 43 77-121 339-381 (547)
304 PRK13409 putative ATPase RIL; 98.2 1E-06 2.2E-11 79.5 3.9 43 79-123 357-399 (590)
305 PRK11160 cysteine/glutathione 98.2 1.2E-06 2.5E-11 78.1 4.2 43 77-121 356-398 (574)
306 TIGR01842 type_I_sec_PrtD type 98.2 1.3E-06 2.8E-11 77.1 4.2 44 77-122 334-377 (544)
307 COG2884 FtsE Predicted ATPase 98.2 1.3E-06 2.8E-11 70.5 3.5 42 77-120 18-59 (223)
308 PRK11174 cysteine/glutathione 98.2 1.3E-06 2.8E-11 77.4 3.8 41 78-121 367-407 (588)
309 COG2274 SunT ABC-type bacterio 98.2 1.4E-06 3.1E-11 80.5 4.2 43 78-122 490-532 (709)
310 PRK14257 phosphate ABC transpo 98.2 1.2E-06 2.7E-11 73.7 3.5 43 77-121 98-145 (329)
311 TIGR00958 3a01208 Conjugate Tr 98.2 1.4E-06 3.1E-11 79.6 4.0 42 78-121 498-539 (711)
312 TIGR01193 bacteriocin_ABC ABC- 98.2 1.4E-06 3.1E-11 79.0 4.1 44 77-122 490-533 (708)
313 TIGR01194 cyc_pep_trnsptr cycl 98.2 1.6E-06 3.5E-11 77.0 4.2 43 78-122 359-401 (555)
314 COG0488 Uup ATPase components 98.2 2.4E-06 5.1E-11 76.8 5.1 55 77-133 338-396 (530)
315 PRK13409 putative ATPase RIL; 98.2 1.6E-06 3.5E-11 78.3 4.1 41 78-121 91-131 (590)
316 COG4586 ABC-type uncharacteriz 98.2 1.5E-06 3.2E-11 73.5 3.4 42 77-120 40-81 (325)
317 TIGR03375 type_I_sec_LssB type 98.2 1.7E-06 3.7E-11 78.4 4.0 42 78-121 482-523 (694)
318 COG1123 ATPase components of v 98.2 1.8E-06 3.9E-11 77.8 4.0 44 77-122 307-350 (539)
319 TIGR01192 chvA glucan exporter 98.1 2E-06 4.4E-11 76.9 4.1 43 77-121 351-393 (585)
320 PLN03211 ABC transporter G-25; 98.1 1.6E-06 3.4E-11 79.3 3.5 43 77-121 84-128 (659)
321 COG0396 sufC Cysteine desulfur 98.1 2.5E-06 5.3E-11 70.3 4.2 45 78-122 21-65 (251)
322 COG4608 AppF ABC-type oligopep 98.1 2.2E-06 4.7E-11 71.4 4.0 45 77-123 29-73 (268)
323 COG4175 ProV ABC-type proline/ 98.1 2.4E-06 5.2E-11 73.4 4.3 42 79-122 46-87 (386)
324 COG4988 CydD ABC-type transpor 98.1 2.7E-06 5.9E-11 76.8 4.7 44 77-122 337-380 (559)
325 COG1101 PhnK ABC-type uncharac 98.1 2.8E-06 6E-11 69.9 4.1 42 78-121 23-64 (263)
326 TIGR00954 3a01203 Peroxysomal 98.1 2.4E-06 5.2E-11 77.8 4.1 43 77-121 468-510 (659)
327 TIGR01846 type_I_sec_HlyB type 98.1 2.8E-06 6.1E-11 77.1 4.2 44 77-122 473-516 (694)
328 TIGR00955 3a01204 The Eye Pigm 98.1 2.9E-06 6.2E-11 76.6 3.9 36 77-114 41-76 (617)
329 COG0488 Uup ATPase components 98.1 5.6E-06 1.2E-10 74.4 5.6 46 78-125 20-65 (530)
330 PF13555 AAA_29: P-loop contai 98.1 3.2E-06 6.9E-11 56.2 3.0 23 86-108 22-44 (62)
331 cd00820 PEPCK_HprK Phosphoenol 98.1 2.3E-06 5.1E-11 62.3 2.5 30 79-108 7-36 (107)
332 PRK10535 macrolide transporter 98.1 3.2E-06 7E-11 76.7 3.8 42 78-121 25-66 (648)
333 cd03270 ABC_UvrA_I The excisio 98.0 2.9E-06 6.2E-11 67.4 2.9 28 77-104 11-38 (226)
334 COG1132 MdlB ABC-type multidru 98.0 4.2E-06 9.2E-11 74.1 4.2 42 78-121 346-387 (567)
335 COG4152 ABC-type uncharacteriz 98.0 3.5E-06 7.7E-11 70.4 3.2 44 77-122 18-61 (300)
336 TIGR03238 dnd_assoc_3 dnd syst 98.0 5.3E-06 1.1E-10 74.2 4.3 38 78-119 23-60 (504)
337 COG3845 ABC-type uncharacteriz 98.0 5.4E-06 1.2E-10 73.9 4.2 42 77-120 20-61 (501)
338 cd03278 ABC_SMC_barmotin Barmo 98.0 2.8E-06 6E-11 66.5 2.1 30 79-109 15-44 (197)
339 COG4148 ModC ABC-type molybdat 98.0 4.6E-06 9.9E-11 70.9 3.4 41 79-121 16-56 (352)
340 TIGR01257 rim_protein retinal- 98.0 5.2E-06 1.1E-10 84.4 3.4 42 78-121 947-988 (2272)
341 PTZ00265 multidrug resistance 98.0 5.4E-06 1.2E-10 81.7 3.4 43 78-122 402-444 (1466)
342 PLN03073 ABC transporter F fam 97.9 8.5E-06 1.8E-10 75.3 4.2 33 77-109 193-225 (718)
343 COG4598 HisP ABC-type histidin 97.9 7.5E-06 1.6E-10 66.3 3.4 42 79-122 24-65 (256)
344 PLN03140 ABC transporter G fam 97.9 7.4E-06 1.6E-10 80.8 3.9 43 77-121 181-226 (1470)
345 TIGR00956 3a01205 Pleiotropic 97.9 6.8E-06 1.5E-10 80.6 3.5 42 78-121 780-824 (1394)
346 COG4181 Predicted ABC-type tra 97.9 1.2E-05 2.5E-10 64.6 4.0 41 78-120 27-67 (228)
347 TIGR01271 CFTR_protein cystic 97.9 8.7E-06 1.9E-10 80.2 3.9 43 78-122 443-485 (1490)
348 KOG0061|consensus 97.9 9.2E-06 2E-10 73.8 3.8 33 77-109 46-78 (613)
349 cd01130 VirB11-like_ATPase Typ 97.9 9.6E-06 2.1E-10 62.4 3.3 37 81-119 19-55 (186)
350 COG4674 Uncharacterized ABC-ty 97.9 4.1E-06 9E-11 68.2 1.2 42 78-121 22-63 (249)
351 TIGR01257 rim_protein retinal- 97.9 1E-05 2.2E-10 82.5 3.6 42 78-121 1956-1997(2272)
352 TIGR00957 MRP_assoc_pro multi 97.9 1.1E-05 2.4E-10 79.5 3.8 43 78-122 655-697 (1522)
353 cd03283 ABC_MutS-like MutS-lik 97.8 1.2E-05 2.6E-10 63.1 3.1 28 82-109 20-47 (199)
354 COG1119 ModF ABC-type molybden 97.8 1.7E-05 3.7E-10 65.7 3.9 33 77-109 47-79 (257)
355 COG4615 PvdE ABC-type sideroph 97.8 1.6E-05 3.4E-10 70.5 3.8 42 79-122 341-382 (546)
356 PLN03232 ABC transporter C fam 97.8 1.6E-05 3.5E-10 78.3 4.1 42 78-121 634-675 (1495)
357 TIGR00956 3a01205 Pleiotropic 97.8 1.5E-05 3.2E-10 78.3 3.6 45 77-121 77-123 (1394)
358 PTZ00243 ABC transporter; Prov 97.8 1.7E-05 3.6E-10 78.6 3.7 42 78-121 677-718 (1560)
359 cd03272 ABC_SMC3_euk Eukaryoti 97.8 1.4E-05 3.1E-10 63.0 2.6 22 87-108 23-44 (243)
360 TIGR00235 udk uridine kinase. 97.8 1.6E-05 3.4E-10 62.0 2.7 26 84-109 3-28 (207)
361 PLN03232 ABC transporter C fam 97.8 2.3E-05 4.9E-10 77.3 4.3 42 78-121 1253-1294(1495)
362 COG4987 CydC ABC-type transpor 97.8 2.5E-05 5.3E-10 70.6 4.1 44 77-122 354-397 (573)
363 PLN03140 ABC transporter G fam 97.7 2.1E-05 4.6E-10 77.7 3.8 32 78-109 897-928 (1470)
364 cd03273 ABC_SMC2_euk Eukaryoti 97.7 1.5E-05 3.3E-10 63.8 2.3 24 86-109 24-47 (251)
365 PRK10078 ribose 1,5-bisphospho 97.7 2.3E-05 5.1E-10 60.1 2.9 23 87-109 2-24 (186)
366 PF00009 GTP_EFTU: Elongation 97.7 2.2E-05 4.8E-10 59.9 2.7 24 86-109 2-25 (188)
367 cd03279 ABC_sbcCD SbcCD and ot 97.7 2.3E-05 4.9E-10 61.5 2.8 23 86-108 27-49 (213)
368 PLN03130 ABC transporter C fam 97.7 2.5E-05 5.5E-10 77.7 3.4 42 78-121 634-676 (1622)
369 PTZ00243 ABC transporter; Prov 97.7 3.5E-05 7.5E-10 76.5 4.1 42 78-121 1327-1368(1560)
370 PLN03130 ABC transporter C fam 97.7 3.5E-05 7.5E-10 76.7 4.1 42 78-121 1256-1297(1622)
371 cd03280 ABC_MutS2 MutS2 homolo 97.7 3E-05 6.6E-10 60.2 2.9 30 79-108 19-49 (200)
372 TIGR00231 small_GTP small GTP- 97.7 9.9E-05 2.2E-09 51.4 5.2 43 89-131 3-45 (161)
373 cd03274 ABC_SMC4_euk Eukaryoti 97.7 2.7E-05 5.9E-10 61.6 2.6 21 88-108 26-46 (212)
374 COG1137 YhbG ABC-type (unclass 97.7 5.8E-06 1.3E-10 67.4 -1.4 42 79-122 22-63 (243)
375 KOG0058|consensus 97.7 3.9E-05 8.5E-10 71.0 3.7 43 78-122 485-527 (716)
376 cd03243 ABC_MutS_homologs The 97.6 3.5E-05 7.6E-10 59.8 2.9 30 80-109 22-51 (202)
377 TIGR00957 MRP_assoc_pro multi 97.6 4.8E-05 1E-09 75.2 4.1 43 78-122 1303-1345(1522)
378 KOG0060|consensus 97.6 4.8E-05 1E-09 69.4 3.8 43 79-123 453-495 (659)
379 cd01888 eIF2_gamma eIF2-gamma 97.6 5E-05 1.1E-09 59.0 3.5 21 89-109 2-22 (203)
380 cd03240 ABC_Rad50 The catalyti 97.6 4E-05 8.6E-10 60.2 2.8 26 82-108 18-43 (204)
381 COG4618 ArpD ABC-type protease 97.6 4.6E-05 1E-09 68.7 3.5 42 78-121 353-394 (580)
382 COG0444 DppD ABC-type dipeptid 97.6 5.7E-05 1.2E-09 64.3 3.8 41 77-119 21-61 (316)
383 KOG0057|consensus 97.6 4E-05 8.7E-10 69.4 3.0 41 78-121 369-409 (591)
384 cd01876 YihA_EngB The YihA (En 97.6 9E-05 2E-09 52.9 4.2 29 90-118 2-30 (170)
385 COG4167 SapF ABC-type antimicr 97.6 6.7E-05 1.5E-09 61.0 3.7 43 78-122 30-72 (267)
386 cd03271 ABC_UvrA_II The excisi 97.6 5.6E-05 1.2E-09 62.2 3.2 30 78-107 12-41 (261)
387 cd01861 Rab6 Rab6 subfamily. 97.6 0.00022 4.8E-09 51.6 6.0 42 90-131 3-44 (161)
388 PF03193 DUF258: Protein of un 97.6 6.8E-05 1.5E-09 58.1 3.3 53 44-109 5-57 (161)
389 COG4178 ABC-type uncharacteriz 97.6 7.8E-05 1.7E-09 68.2 4.1 43 78-122 410-452 (604)
390 cd01878 HflX HflX subfamily. 97.5 0.00015 3.2E-09 55.5 5.1 27 85-111 39-65 (204)
391 PRK00300 gmk guanylate kinase; 97.5 6.7E-05 1.5E-09 57.6 3.2 25 85-109 3-27 (205)
392 COG4778 PhnL ABC-type phosphon 97.5 6.8E-05 1.5E-09 60.3 3.2 46 78-125 28-74 (235)
393 PF13476 AAA_23: AAA domain; P 97.5 6.3E-05 1.4E-09 56.1 2.9 23 86-108 18-40 (202)
394 KOG0055|consensus 97.5 6.3E-05 1.4E-09 73.1 3.5 42 79-122 371-412 (1228)
395 PRK14738 gmk guanylate kinase; 97.5 0.00012 2.6E-09 57.5 4.5 27 83-109 9-35 (206)
396 cd03275 ABC_SMC1_euk Eukaryoti 97.5 5E-05 1.1E-09 60.9 2.4 23 87-109 22-44 (247)
397 PRK05480 uridine/cytidine kina 97.5 6.5E-05 1.4E-09 58.3 2.9 25 85-109 4-28 (209)
398 PTZ00265 multidrug resistance 97.5 6.6E-05 1.4E-09 74.2 3.6 36 78-115 1185-1220(1466)
399 PRK09825 idnK D-gluconate kina 97.5 7.2E-05 1.6E-09 57.7 3.1 24 86-109 2-25 (176)
400 TIGR02322 phosphon_PhnN phosph 97.5 7E-05 1.5E-09 56.5 2.9 23 87-109 1-23 (179)
401 PRK09270 nucleoside triphospha 97.5 5E-05 1.1E-09 60.2 2.3 33 85-119 31-63 (229)
402 COG1123 ATPase components of v 97.5 9.2E-05 2E-09 66.9 4.1 44 77-122 25-72 (539)
403 TIGR03598 GTPase_YsxC ribosome 97.5 0.00021 4.5E-09 53.9 5.5 46 84-129 15-62 (179)
404 cd01898 Obg Obg subfamily. Th 97.5 0.00012 2.6E-09 53.5 4.0 22 90-111 3-24 (170)
405 KOG0065|consensus 97.5 7.9E-05 1.7E-09 72.9 3.7 42 78-123 808-849 (1391)
406 smart00175 RAB Rab subfamily o 97.5 0.00027 5.9E-09 51.0 5.7 32 90-121 3-34 (164)
407 PF01926 MMR_HSR1: 50S ribosom 97.5 0.00014 3E-09 51.0 3.9 35 90-124 2-37 (116)
408 TIGR03263 guanyl_kin guanylate 97.5 8.4E-05 1.8E-09 55.9 2.9 23 87-109 1-23 (180)
409 cd04159 Arl10_like Arl10-like 97.5 0.00018 4E-09 50.8 4.2 21 90-110 2-22 (159)
410 TIGR01271 CFTR_protein cystic 97.4 0.0001 2.2E-09 72.8 3.7 41 78-121 1236-1276(1490)
411 cd04171 SelB SelB subfamily. 97.4 0.00028 6.1E-09 50.8 5.0 43 89-131 2-47 (164)
412 PTZ00327 eukaryotic translatio 97.4 8.5E-05 1.9E-09 65.7 2.7 45 83-127 30-77 (460)
413 TIGR00475 selB selenocysteine- 97.4 0.0002 4.3E-09 64.9 4.9 45 89-133 2-49 (581)
414 cd04113 Rab4 Rab4 subfamily. 97.4 0.00049 1.1E-08 50.0 6.1 40 90-129 3-42 (161)
415 cd04114 Rab30 Rab30 subfamily. 97.4 0.00058 1.3E-08 49.9 6.4 27 86-112 6-32 (169)
416 cd01862 Rab7 Rab7 subfamily. 97.4 0.00037 8.1E-09 50.8 5.3 23 90-112 3-25 (172)
417 smart00382 AAA ATPases associa 97.4 0.00016 3.5E-09 49.2 3.1 24 86-109 1-24 (148)
418 cd04119 RJL RJL (RabJ-Like) su 97.4 0.00056 1.2E-08 49.3 5.9 24 90-113 3-26 (168)
419 cd04164 trmE TrmE (MnmE, ThdF, 97.4 0.00042 9.1E-09 49.3 5.1 24 88-111 2-25 (157)
420 PRK10751 molybdopterin-guanine 97.4 0.00013 2.8E-09 57.0 2.6 25 85-109 4-28 (173)
421 cd01897 NOG NOG1 is a nucleola 97.3 0.00041 8.8E-09 50.6 5.1 25 88-112 1-25 (168)
422 cd04155 Arl3 Arl3 subfamily. 97.3 0.00017 3.7E-09 53.0 3.0 24 87-110 14-37 (173)
423 PRK11537 putative GTP-binding 97.3 0.0002 4.4E-09 60.4 3.8 36 85-120 2-43 (318)
424 KOG0062|consensus 97.3 0.00013 2.7E-09 66.0 2.7 31 79-109 98-128 (582)
425 cd01885 EF2 EF2 (for archaea a 97.3 0.00014 3E-09 58.4 2.7 22 88-109 1-22 (222)
426 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0001 2.2E-09 55.3 1.8 23 86-108 2-24 (188)
427 PRK00454 engB GTP-binding prot 97.3 0.00046 1E-08 51.8 5.3 44 85-128 22-67 (196)
428 cd02023 UMPK Uridine monophosp 97.3 0.00013 2.9E-09 56.0 2.4 21 89-109 1-21 (198)
429 cd00880 Era_like Era (E. coli 97.3 0.00027 5.8E-09 49.2 3.6 39 92-130 1-40 (163)
430 KOG0054|consensus 97.3 0.00021 4.6E-09 70.4 4.1 44 77-122 537-580 (1381)
431 PF13207 AAA_17: AAA domain; P 97.3 0.00023 5E-09 50.0 3.1 21 89-109 1-21 (121)
432 PF00350 Dynamin_N: Dynamin fa 97.3 0.00021 4.6E-09 52.6 3.0 32 90-121 1-32 (168)
433 PRK10512 selenocysteinyl-tRNA- 97.3 0.00037 8E-09 63.6 5.2 43 89-131 2-47 (614)
434 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.00016 3.5E-09 57.2 2.5 33 77-109 19-51 (204)
435 cd04163 Era Era subfamily. Er 97.3 0.0002 4.4E-09 50.8 2.7 26 87-112 3-28 (168)
436 TIGR00554 panK_bact pantothena 97.3 0.00014 3.1E-09 60.9 2.3 25 85-109 60-84 (290)
437 smart00053 DYNc Dynamin, GTPas 97.3 0.00025 5.5E-09 57.9 3.6 36 86-121 25-60 (240)
438 cd01889 SelB_euk SelB subfamil 97.3 0.00027 5.9E-09 53.8 3.6 43 90-132 3-52 (192)
439 TIGR02788 VirB11 P-type DNA tr 97.3 0.00022 4.7E-09 59.4 3.2 34 83-118 140-173 (308)
440 PRK08154 anaerobic benzoate ca 97.3 0.00031 6.7E-09 58.6 4.0 98 1-109 42-155 (309)
441 TIGR02858 spore_III_AA stage I 97.2 0.0003 6.4E-09 58.3 3.7 32 88-121 112-143 (270)
442 PRK04213 GTP-binding protein; 97.2 0.00066 1.4E-08 51.6 5.3 40 86-125 8-47 (201)
443 PF13304 AAA_21: AAA domain; P 97.2 7.4E-05 1.6E-09 55.1 0.0 20 89-108 1-20 (303)
444 KOG0056|consensus 97.2 0.00024 5.2E-09 64.7 3.1 43 77-121 554-596 (790)
445 cd04124 RabL2 RabL2 subfamily. 97.2 0.0011 2.5E-08 48.7 6.3 24 90-113 3-26 (161)
446 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.0003 6.5E-09 58.1 3.2 23 87-109 161-183 (287)
447 cd02026 PRK Phosphoribulokinas 97.2 0.00021 4.6E-09 59.0 2.3 20 89-108 1-20 (273)
448 COG4138 BtuD ABC-type cobalami 97.2 0.0004 8.6E-09 56.2 3.6 31 79-109 17-47 (248)
449 cd00154 Rab Rab family. Rab G 97.2 0.0014 3.1E-08 46.1 6.1 24 90-113 3-26 (159)
450 cd04123 Rab21 Rab21 subfamily. 97.2 0.001 2.2E-08 47.7 5.3 25 90-114 3-27 (162)
451 PRK00098 GTPase RsgA; Reviewed 97.2 0.00041 9E-09 57.6 3.7 24 86-109 163-186 (298)
452 PF10662 PduV-EutP: Ethanolami 97.1 0.00045 9.7E-09 52.7 3.6 37 89-129 3-39 (143)
453 PRK14722 flhF flagellar biosyn 97.1 0.00031 6.8E-09 60.9 3.0 30 80-109 130-159 (374)
454 cd02025 PanK Pantothenate kina 97.1 0.00025 5.4E-09 56.6 2.3 21 89-109 1-21 (220)
455 PF02463 SMC_N: RecF/RecN/SMC 97.1 0.0004 8.7E-09 54.0 3.3 23 86-108 23-45 (220)
456 cd00071 GMPK Guanosine monopho 97.1 0.0003 6.4E-09 52.1 2.4 21 89-109 1-21 (137)
457 cd04167 Snu114p Snu114p subfam 97.1 0.0003 6.6E-09 54.8 2.5 22 88-109 1-22 (213)
458 cd03239 ABC_SMC_head The struc 97.1 0.00044 9.6E-09 53.4 3.2 21 88-108 23-43 (178)
459 cd04104 p47_IIGP_like p47 (47- 97.1 0.00042 9.2E-09 53.5 3.0 21 89-109 3-23 (197)
460 cd04169 RF3 RF3 subfamily. Pe 97.1 0.00056 1.2E-08 56.1 3.8 23 87-109 2-24 (267)
461 cd03112 CobW_like The function 97.1 0.00053 1.2E-08 51.8 3.4 22 88-109 1-22 (158)
462 cd03276 ABC_SMC6_euk Eukaryoti 97.1 0.00044 9.6E-09 54.1 2.9 21 88-108 22-42 (198)
463 PF08477 Miro: Miro-like prote 97.1 0.00046 9.9E-09 47.9 2.7 24 90-113 2-25 (119)
464 TIGR00073 hypB hydrogenase acc 97.1 0.00039 8.4E-09 54.3 2.6 26 84-109 19-44 (207)
465 PF02492 cobW: CobW/HypB/UreG, 97.0 0.00048 1.1E-08 52.7 3.0 31 88-118 1-38 (178)
466 cd01866 Rab2 Rab2 subfamily. 97.0 0.0013 2.9E-08 48.6 5.3 24 89-112 6-29 (168)
467 TIGR01187 potA spermidine/putr 97.0 0.00023 5E-09 59.6 1.2 18 92-109 1-18 (325)
468 PRK08233 hypothetical protein; 97.0 0.00053 1.1E-08 51.2 3.0 24 86-109 2-25 (182)
469 cd04160 Arfrp1 Arfrp1 subfamil 97.0 0.00044 9.5E-09 50.4 2.6 20 90-109 2-21 (167)
470 KOG0927|consensus 97.0 0.0004 8.6E-09 63.2 2.7 45 79-125 408-452 (614)
471 TIGR02168 SMC_prok_B chromosom 97.0 0.00037 8E-09 65.0 2.6 22 87-108 23-44 (1179)
472 cd01860 Rab5_related Rab5-rela 97.0 0.0015 3.2E-08 47.3 5.3 24 90-113 4-27 (163)
473 PF03205 MobB: Molybdopterin g 97.0 0.00053 1.1E-08 51.3 3.0 22 88-109 1-22 (140)
474 cd02019 NK Nucleoside/nucleoti 97.0 0.00048 1E-08 45.3 2.4 21 89-109 1-21 (69)
475 cd01852 AIG1 AIG1 (avrRpt2-ind 97.0 0.00094 2E-08 51.3 4.3 43 89-131 2-46 (196)
476 cd00879 Sar1 Sar1 subfamily. 97.0 0.0014 3E-08 49.2 5.1 24 86-109 18-41 (190)
477 cd04135 Tc10 TC10 subfamily. 97.0 0.002 4.2E-08 47.4 5.8 31 90-120 3-33 (174)
478 cd04106 Rab23_lke Rab23-like s 97.0 0.0022 4.7E-08 46.4 5.9 24 90-113 3-26 (162)
479 COG1162 Predicted GTPases [Gen 97.0 0.00044 9.6E-09 58.5 2.3 25 84-108 161-185 (301)
480 cd03284 ABC_MutS1 MutS1 homolo 97.0 0.00043 9.4E-09 55.0 2.1 29 80-109 24-52 (216)
481 cd00157 Rho Rho (Ras homology) 97.0 0.0019 4.1E-08 47.0 5.4 23 90-112 3-25 (171)
482 cd01883 EF1_alpha Eukaryotic e 97.0 0.00047 1E-08 54.2 2.3 19 90-108 2-20 (219)
483 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.00044 9.4E-09 55.2 2.1 32 77-108 20-51 (222)
484 COG0194 Gmk Guanylate kinase [ 97.0 0.0012 2.5E-08 52.8 4.5 24 86-109 3-26 (191)
485 cd01881 Obg_like The Obg-like 97.0 0.00079 1.7E-08 49.1 3.3 20 92-111 1-20 (176)
486 cd01879 FeoB Ferrous iron tran 97.0 0.00073 1.6E-08 48.4 3.1 32 92-123 1-32 (158)
487 PRK14737 gmk guanylate kinase; 97.0 0.00063 1.4E-08 53.0 3.0 25 85-109 2-26 (186)
488 cd03227 ABC_Class2 ABC-type Cl 97.0 0.00067 1.5E-08 51.1 3.0 24 85-108 19-42 (162)
489 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00078 1.7E-08 50.7 3.3 26 84-109 19-44 (133)
490 cd04166 CysN_ATPS CysN_ATPS su 97.0 0.00055 1.2E-08 53.3 2.6 20 90-109 2-21 (208)
491 PRK05541 adenylylsulfate kinas 97.0 0.00077 1.7E-08 50.9 3.3 26 84-109 4-29 (176)
492 PLN02796 D-glycerate 3-kinase 96.9 0.00054 1.2E-08 59.0 2.6 25 85-109 98-122 (347)
493 cd01894 EngA1 EngA1 subfamily. 96.9 0.00085 1.8E-08 47.8 3.3 40 91-130 1-41 (157)
494 cd01884 EF_Tu EF-Tu subfamily. 96.9 0.00058 1.3E-08 53.4 2.6 21 89-109 4-24 (195)
495 COG0419 SbcC ATPase involved i 96.9 0.00054 1.2E-08 64.6 2.8 25 84-108 22-46 (908)
496 PF13671 AAA_33: AAA domain; P 96.9 0.00081 1.8E-08 48.2 3.1 21 89-109 1-21 (143)
497 cd01890 LepA LepA subfamily. 96.9 0.00074 1.6E-08 49.9 3.0 22 88-109 1-22 (179)
498 cd01895 EngA2 EngA2 subfamily. 96.9 0.00075 1.6E-08 48.5 2.9 23 87-109 2-24 (174)
499 cd01868 Rab11_like Rab11-like. 96.9 0.0022 4.8E-08 46.7 5.4 24 89-112 5-28 (165)
500 COG3910 Predicted ATPase [Gene 96.9 0.00071 1.5E-08 55.0 2.9 26 83-108 33-58 (233)
No 1
>KOG1145|consensus
Probab=99.94 E-value=4.7e-27 Score=208.78 Aligned_cols=130 Identities=44% Similarity=0.628 Sum_probs=107.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeC-CCCccccCCCCCcccCCCCCC
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADDSNGKDVERRPPAD 79 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~-~~~~~~~~~~~~d~~~~~~~~ 79 (139)
||+.+||..++++..++++.|+..|...++....+.||.- .+.++++.+++++++.. +.++. .+..+.+..++++.+
T Consensus 68 m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~-~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~a~ 145 (683)
T KOG1145|consen 68 MTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTK-GILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPEAD 145 (683)
T ss_pred ccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchH-HHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCccC
Confidence 7899999999999999999999997422222222367754 77788999999888877 33332 223456667788888
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
++...+|+|||+||||+|||||||||+||++.++..|+||||||||||+|.+.
T Consensus 146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p 198 (683)
T KOG1145|consen 146 PKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP 198 (683)
T ss_pred HhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC
Confidence 99999999999999999999999999999999999999999999999999986
No 2
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=4.8e-22 Score=178.29 Aligned_cols=121 Identities=35% Similarity=0.499 Sum_probs=99.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP 80 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 80 (139)
|||+|||++|++++.+|++.||.+|.+ ++.|+ .||.+ +++++|+|||+++.........+ ... .++.+.
T Consensus 12 ~~v~~la~~~~~~~~~~~~~l~~~g~~--~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 80 (587)
T TIGR00487 12 LTVSELANKMNIKVSDIIKKLMLLGVM--VTINQ-VLDKE-TAELVAEEFGVKVEVRVTLEETE-----AEE--QDEDSG 80 (587)
T ss_pred eEHHHHHHHHCcCHHHHHHHHHHCCCE--ecCCc-CcCHH-HHHHHHHHhCCceEEeccchhhh-----hhc--cccccc
Confidence 689999999999999999999999954 66776 89954 99999999999988755321111 111 112223
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
+...+|+|++++|||+|||||||+++|++.++...+.|+|||++|+|++...
T Consensus 81 ~~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 81 DLLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE 132 (587)
T ss_pred cccccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC
Confidence 4567899999999999999999999999999999999999999999998874
No 3
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=1.2e-21 Score=180.58 Aligned_cols=114 Identities=35% Similarity=0.505 Sum_probs=97.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP 80 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 80 (139)
|||+|||++|++++.+||+.||.+|.+ ++.|+ .||. +++++||+|||+++....++. ..+.
T Consensus 223 itv~ela~~~~~~~~~ii~~l~~~g~~--~~~n~-~l~~-~~~~~i~~e~g~~~~~~~~~~---------------~~~~ 283 (787)
T PRK05306 223 ITVAELAEKMAVKAAEVIKKLFKLGVM--ATINQ-SLDQ-ETAELLAEEFGHEVKLVSLLE---------------DDDE 283 (787)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHcCCe--ecCCC-ccCH-HHHHHHHHHcCCEEEEccccc---------------cccc
Confidence 799999999999999999999999854 66666 8985 599999999999988766431 0112
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEeee
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~~ 133 (139)
....+|+|+++||||+|||||||+++|++.++...+.|+||||+|+|++.+.+
T Consensus 284 ~~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~ 336 (787)
T PRK05306 284 EDLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG 336 (787)
T ss_pred cccccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC
Confidence 23478999999999999999999999999999999999999999999998753
No 4
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=5.3e-21 Score=175.48 Aligned_cols=124 Identities=30% Similarity=0.453 Sum_probs=98.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP 80 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 80 (139)
|||+|||++|++++.+||+.||.+|.+ ++.|+ .||. ++++.+|+|||+++.........+ .... ...+..+.
T Consensus 166 ~tv~~la~~~~~~~~~ii~~l~~~g~~--~~~n~-~l~~-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~--~~~~~~~~ 237 (742)
T CHL00189 166 LTIQELSTLLCIPETEIIKSLFLKGIS--VTVNQ-IIDI-SIISQVADDFGINIISEEKNNINE--KTSN--LDNTSAFT 237 (742)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHcCcC--ccCCC-ccCH-HHHHHHHHHcCCeEEEeccchhhh--hhhc--ccccccch
Confidence 699999999999999999999999854 66666 8985 499999999999987765321111 0001 01111123
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
....+|+|+++||||+|||||||+++|++..+...+.|++||++++|++.+.
T Consensus 238 ~~l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 238 ENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred hhhcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE
Confidence 4467999999999999999999999999988888999999999999998764
No 5
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.9e-18 Score=152.84 Aligned_cols=49 Identities=69% Similarity=0.974 Sum_probs=47.4
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
..|+||||||||+|||||||||.||+++++..|+|+||||||||+|.++
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~ 50 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLD 50 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEec
Confidence 4699999999999999999999999999999999999999999999986
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.12 E-value=6.2e-11 Score=106.78 Aligned_cols=48 Identities=58% Similarity=0.863 Sum_probs=45.1
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
..|+|+++||||+|||||||+++|+++.+...+.|++|||||+|.+..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~ 50 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPI 50 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccc
Confidence 479999999999999999999999999999999999999999998764
No 7
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.01 E-value=3e-10 Score=102.68 Aligned_cols=48 Identities=58% Similarity=0.875 Sum_probs=44.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
.|+|+++||||+|||||||+++|++..+...+.|++|||||+|.+...
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~ 49 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMD 49 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeec
Confidence 489999999999999999999999999999999999999999988653
No 8
>KOG1144|consensus
Probab=98.96 E-value=4e-10 Score=104.20 Aligned_cols=49 Identities=51% Similarity=0.687 Sum_probs=44.3
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGF 130 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~ 130 (139)
-.--|.||.|||||+|.|||-||++||++||..+++|||||.|||--+.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccc
Confidence 3456899999999999999999999999999999999999999984443
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.96 E-value=5.7e-10 Score=91.71 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.+|++++|+|||||||||||+.| +|+..+..|.|.-
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLrii--AGL~~p~~G~V~~ 62 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLI--AGLEKPTSGEVLL 62 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 468899999999999999999999999999 7788888886543
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.92 E-value=8.8e-10 Score=90.98 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| +++.++..|.|.-
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l--~g~l~p~~G~V~l 61 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCL--AGLLKPKSGEVLL 61 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHH--hccCCCCCCEEEE
Confidence 468999999999999999999999999999 8888888887754
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.91 E-value=9.7e-10 Score=94.20 Aligned_cols=43 Identities=33% Similarity=0.413 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
++.++.+.++++++++|||||||||||++| +|+..+..|.|.-
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~I--AGfe~p~~G~I~l 64 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMI--AGFEQPSSGEILL 64 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 468899999999999999999999999999 7777888887653
No 12
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=2.1e-09 Score=87.60 Aligned_cols=42 Identities=33% Similarity=0.484 Sum_probs=35.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
++.++.+.+++|++|+|||||||||||+|| .++.....|.|+
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRcl--N~LE~~~~G~I~ 60 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCL--NGLEEPDSGSIT 60 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHH--HCCcCCCCceEE
Confidence 468899999999999999999999999999 555556666554
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.85 E-value=2.4e-09 Score=86.98 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=37.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++++++|||||||||||||++| .++..+..|.++
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLnii--g~ld~pt~G~v~ 63 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL--GGLDKPTSGEVL 63 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCceEE
Confidence 4578999999999999999999999999999 777777777643
No 14
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.78 E-value=5.9e-09 Score=79.80 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 50 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHL--NGLLRPQSGAVL 50 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceeEE
Confidence 467899999999999999999999999999 777788888774
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.78 E-value=5e-09 Score=89.42 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+..+++++++|||||||||||++| +|+..+..|.|.
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~I--AGLe~~~~G~I~ 61 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMI--AGLEEPTSGEIL 61 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 468899999999999999999999999999 677777777663
No 16
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.77 E-value=5.8e-09 Score=81.13 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~ 62 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNIL--GGLDRPTSGEVR 62 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHH--hCCcCCCceeEE
Confidence 467899999999999999999999999999 777788888764
No 17
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.76 E-value=6.9e-09 Score=80.30 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| +++.++..|.|+
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 58 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKIL--AGLIKESSGSIL 58 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 467899999999999999999999999999 778888888764
No 18
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.75 E-value=7.3e-09 Score=80.21 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| ++..++..|.|+
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 59 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLL--NGLLGPTSGEVL 59 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 467899999999999999999999999999 777788888775
No 19
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.75 E-value=9.2e-09 Score=79.61 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| +|..++..|.|+
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCI--NLLEEPDSGTII 58 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 777788888765
No 20
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.75 E-value=7.5e-09 Score=80.56 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|+||||||||+++| .++.++..|.|+
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 61 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLI--LGIEKPTRGKIR 61 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777778664
No 21
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=7.3e-09 Score=81.73 Aligned_cols=42 Identities=21% Similarity=0.454 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 58 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLI--VGLLRPDSGEVL 58 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777888888765
No 22
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.74 E-value=1e-08 Score=79.97 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+|||||||||++| ++..++..|.|.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 63 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAI--LGLLKPTSGSII 63 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 777777888664
No 23
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.74 E-value=9.9e-09 Score=79.63 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|+
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~ 60 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLL--YGALTPSRGQVR 60 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 777778888775
No 24
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.73 E-value=1.1e-08 Score=79.40 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .+..++..|.|+
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 57 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAI--LGLLKPTSGSIR 57 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEE
Confidence 467899999999999999999999999999 777788888775
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=1e-08 Score=79.61 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 58 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLI--AGLERPDSGEIL 58 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 467899999999999999999999999999 777788888774
No 26
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.73 E-value=1.1e-08 Score=80.25 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +++.++..|.|.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 58 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMI--VGLVKPDSGKIL 58 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777888888764
No 27
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.73 E-value=1e-08 Score=80.74 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+||||||||||+++| +++.++..|.++
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~~~sG~i~ 45 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLL--CGLDAPDEGDFI 45 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCccCCCCCEE
Confidence 57899999999999999999999999999 788888899886
No 28
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.72 E-value=1.2e-08 Score=80.34 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| .++.++..|.|.
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 58 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLI--SGFLRPTSGSVL 58 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCceEE
Confidence 467899999999999999999999999999 777777888764
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.2e-08 Score=84.12 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=40.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+||||+|||||+++| .|+.++..|.|.
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~i--LGll~p~~G~i~ 62 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAI--LGLLKPSSGEIK 62 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCcCCcceEE
Confidence 3578999999999999999999999999999 999999999887
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.1e-08 Score=80.03 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|..++..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 58 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKML--TTLLKPTSGRAT 58 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777788888775
No 31
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.72 E-value=9.7e-09 Score=79.94 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| .++.++..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 58 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTI--MGLLPPRSGSIR 58 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 457899999999999999999999999999 777777888765
No 32
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.71 E-value=1.1e-08 Score=79.73 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+||||||++| ++..++..|.|+
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 63 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLL--GGLDNPTSGEVL 63 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777778888764
No 33
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.71 E-value=6.8e-09 Score=74.77 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=36.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|++|||||||+++| .+..++..|.|.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l--~g~~~~~~G~i~ 43 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKAL--AGLLPPDSGSIL 43 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHH--TTSSHESEEEEE
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeee--cccccccccccc
Confidence 35788999999999999999999999999 888888888774
No 34
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.70 E-value=1.2e-08 Score=79.11 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 59 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI--YKEELPTSGTIR 59 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 3467899999999999999999999999999 777777888764
No 35
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.70 E-value=1.3e-08 Score=79.22 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 60 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKML--TGELRPTSGTAY 60 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 468899999999999999999999999999 777788888764
No 36
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.70 E-value=1.3e-08 Score=78.82 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|+
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 58 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKII--LGLIKPDSGEIT 58 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence 467899999999999999999999999999 777777788664
No 37
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.4e-08 Score=79.89 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 59 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCL--NGLVEPTSGSVL 59 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCCceEE
Confidence 467899999999999999999999999999 777777778764
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.70 E-value=1.5e-08 Score=80.06 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 60 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCI--NRLVEPSSGSIL 60 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCccEEE
Confidence 467899999999999999999999999999 777777788764
No 39
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.6e-08 Score=79.59 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 63 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCI--NGLERPTSGSVL 63 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 778888888764
No 40
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.4e-08 Score=79.40 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 62 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRII--AGLERPTSGEVL 62 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777888765
No 41
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.2e-08 Score=79.01 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| +|..++..|.|+
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMI--LGIILPDSGEVL 58 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 457899999999999999999999999999 777777788764
No 42
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.69 E-value=1.6e-08 Score=79.37 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .+..++..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTL--MGLLPVKSGSIR 58 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 467899999999999999999999999999 778788888765
No 43
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.69 E-value=1.5e-08 Score=78.05 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .|+.++..|.|.
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 56 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNII--GLLEKFDSGQVY 56 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 467899999999999999999999999999 777777888664
No 44
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.69 E-value=1.6e-08 Score=78.47 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.+.
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~v~ 58 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMI--AGLEEPTSGRIY 58 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777788665
No 45
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.68 E-value=1.6e-08 Score=78.64 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| +++.++..|.|+
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 63 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRML--AGLLEPDAGFAT 63 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCCceEE
Confidence 467899999999999999999999999999 778888888764
No 46
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.68 E-value=1.6e-08 Score=79.33 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| .++.++..|.|.
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~p~~G~i~ 68 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAIL--AGLDDGSSGEVS 68 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCeeEE
Confidence 467899999999999999999999999999 777777888764
No 47
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.68 E-value=1.9e-08 Score=76.89 Aligned_cols=42 Identities=31% Similarity=0.393 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.++
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEAL--FGLRPPASGEIT 58 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 457899999999999999999999999999 777788888765
No 48
>PRK10908 cell division protein FtsE; Provisional
Probab=98.67 E-value=1.7e-08 Score=78.96 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| .+..++..|.|+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 60 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLI--CGIERPSAGKIW 60 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777788888765
No 49
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.67 E-value=2.1e-08 Score=77.84 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| .+..++..|.|.
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~v~ 59 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRIL--AGLARPDAGEVL 59 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 468899999999999999999999999999 778888888775
No 50
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.5e-08 Score=79.96 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 67 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLL--GGLDTPTSGDVI 67 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 467899999999999999999999999999 777777788664
No 51
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.8e-08 Score=76.81 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .+..++..|.|.
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCI--AGLEEPDSGSIL 58 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 457899999999999999999999999999 777788888765
No 52
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.8e-08 Score=79.76 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| ++..++..|.|+
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 61 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMV--VGIVPRDAGNII 61 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777778888765
No 53
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.67 E-value=1.8e-08 Score=77.93 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .|+.++..|.++
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~v~ 59 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLI--AGLLNPEKGEIL 59 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeeEE
Confidence 467899999999999999999999999999 777788888664
No 54
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.67 E-value=2e-08 Score=78.24 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .+..++..|.|+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 60 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLI--AGLLPPAAGTIK 60 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 777777888775
No 55
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.67 E-value=2.1e-08 Score=79.38 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=36.9
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|.
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 43 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLI--SGLAQPTSGGVI 43 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 46889999999999999999999999999 777788888775
No 56
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1.8e-08 Score=81.20 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+|||||||||++| .+..++..|.|+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 59 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLI--AGFVPYQHGSIT 59 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777777888775
No 57
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.66 E-value=2e-08 Score=77.50 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=37.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+||||+|||||+++| ++..++..|.|.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRIL--AGLLRPDSGEVR 58 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence 467899999999999999999999999999 777777788664
No 58
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.9e-08 Score=79.66 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|.
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 60 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLI--AGLERPDSGTIL 60 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777778664
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.66 E-value=1.8e-08 Score=83.06 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=38.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||+|||||+++| +|+.++..|.|.
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l--~Gl~~p~~G~i~ 51 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRML--TTLLRPTSGTAR 51 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 888888888775
No 60
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.66 E-value=2.2e-08 Score=78.29 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=38.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++++++|+|+||+|||||+++| .++.++..|.|+-
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~~ 67 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSL--YANYLPDSGRILV 67 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence 468899999999999999999999999999 7777778887754
No 61
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=98.66 E-value=9.7e-09 Score=65.42 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh-cCceeeecCCCcccCcHHHHHHHHHHhCCe
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMY-VDNSVNYDRPSSVIYDFQVIIDIIQKSGMK 53 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~-~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~ 53 (139)
|||.|||+.+|+++.+||+.|+. +|.. ..+.++ .||++ .++.|+++||++
T Consensus 4 i~V~elAk~l~v~~~~ii~~l~~~~Gi~-~~~~~~-~ld~e-~~~~i~~~~~~k 54 (54)
T PF04760_consen 4 IRVSELAKELGVPSKEIIKKLFKELGIM-VKSINS-SLDEE-EAELIAEEFGVK 54 (54)
T ss_dssp E-TTHHHHHHSSSHHHHHHHH-HHHTS----SSSS--EETT-GGGHHHHHH---
T ss_pred eEHHHHHHHHCcCHHHHHHHHHHhCCcC-cCCCCC-cCCHH-HHHHHHHHhCcC
Confidence 58999999999999999999977 8843 356666 89965 999999999974
No 62
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.66 E-value=2.4e-08 Score=75.63 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||||||||+++| .+..++..|.|+-
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~~ 60 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRAL--AGLWPWGSGRIGM 60 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence 467899999999999999999999999999 7788888887754
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.66 E-value=1.6e-08 Score=79.21 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc-----ccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV-----KSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~-----~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++. ++..|.|+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~ 63 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLL--NRLNDLIPGAPDEGEVL 63 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccccCCCCCeEEE
Confidence 467899999999999999999999999999 7777 67778664
No 64
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.3e-08 Score=78.27 Aligned_cols=43 Identities=30% Similarity=0.371 Sum_probs=38.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|+||+||||||++| ++..++..|.|.
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 61 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL--MRFYDPQKGQIL 61 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence 3467899999999999999999999999999 777888888775
No 65
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.65 E-value=2.3e-08 Score=78.83 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| +|..++..|.|+-
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~~ 62 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILL 62 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHH--hccCCCCCCEEEE
Confidence 467899999999999999999999999999 7777888887753
No 66
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.65 E-value=2.4e-08 Score=77.77 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=37.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|+
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 62 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL--AGLYKPTSGSVL 62 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCeEE
Confidence 3467899999999999999999999999999 777777888764
No 67
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.65 E-value=2.1e-08 Score=79.32 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| +|..++..|.|.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 59 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLL--TRLYVAQEGQIS 59 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence 467899999999999999999999999999 777788888765
No 68
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=2.4e-08 Score=77.42 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=36.9
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.++++++|+|+||+|||||+++| +++.++..|.|+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~gl~~~~~G~i~ 56 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLI--AGFETPQSGRVL 56 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 67899999999999999999999999999 777777788664
No 69
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.65 E-value=2.5e-08 Score=77.13 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|++|+|||||+++| .++.++..|.|.-
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i--~G~~~~~~G~i~~ 64 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEKLSGSVSV 64 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hCcCCCCCCeEEE
Confidence 468899999999999999999999999999 8888888897754
No 70
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.65 E-value=2.8e-08 Score=77.11 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .+..++..|.|.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRIL--AGLSPPLAGRVL 58 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 468899999999999999999999999999 777777888764
No 71
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=2.4e-08 Score=75.78 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| ++..++..|.|+
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~ 58 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKII--LGLLKPDSGEIK 58 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 467899999999999999999999999999 777777788664
No 72
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.65 E-value=2.4e-08 Score=78.68 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++++++|+|+||+|||||+++| .++.++..|.|.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 65 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIV--ASLISPTSGTLL 65 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCeEE
Confidence 3468899999999999999999999999999 677777778664
No 73
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.64 E-value=2.4e-08 Score=75.50 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|+||+|||||+++| .+..++..|.+.
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~v~ 58 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKIL--SGLYKPDSGEIL 58 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 457899999999999999999999999999 778888888765
No 74
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.64 E-value=2.1e-08 Score=76.10 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|++|+||||||++| ++..++..|.|+
T Consensus 19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~ 60 (173)
T cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLI--LGLLRPTSGRVR 60 (173)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCeEE
Confidence 457899999999999999999999999999 777788888775
No 75
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.4e-08 Score=78.44 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|+-
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 61 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLI--PRFYDVDSGRILI 61 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hccccCCCCEEEE
Confidence 467899999999999999999999999999 7777888887753
No 76
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.6e-08 Score=80.65 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=38.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+||||||++| .++.++..|.|.
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 59 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNL--SGLLRPQKGAVL 59 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCccEEE
Confidence 3468899999999999999999999999999 778888888764
No 77
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.3e-08 Score=77.60 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=36.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++ +++|+|+||+|||||+++| .++.++..|.|.
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 57 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRIL--ATLTPPSSGTIR 57 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence 4678899999 9999999999999999999 777788888765
No 78
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.6e-08 Score=75.41 Aligned_cols=43 Identities=33% Similarity=0.378 Sum_probs=38.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|++|+|||||+++| +++.++..|.++
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i--~G~~~~~~G~i~ 60 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL--LRLYDPTSGEIL 60 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCCEEE
Confidence 3467899999999999999999999999999 777888888764
No 79
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.4e-08 Score=79.05 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++++++|+|+||+|||||+++| +|+.++..|.|+-
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~~ 61 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVL--NLLEMPRSGTLNI 61 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEE
Confidence 467899999999999999999999999999 7777778887753
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.64 E-value=2.5e-08 Score=78.92 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| .++.++..|.|.
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 59 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCI--NKLEEITSGDLI 59 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777788664
No 81
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.4e-08 Score=79.24 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|.
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 59 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIF 59 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 467899999999999999999999999999 777777888764
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.7e-08 Score=79.10 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 61 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL 61 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777788888765
No 83
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.63 E-value=2.7e-08 Score=78.63 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| ++..++..|.|+
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 60 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVI--TGKTRPDEGSVL 60 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEE
Confidence 467899999999999999999999999999 777777888665
No 84
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.63 E-value=2.9e-08 Score=75.79 Aligned_cols=42 Identities=36% Similarity=0.498 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i--~G~~~~~~G~v~ 57 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTL--AGLLKPSSGEIL 57 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 788888888775
No 85
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.63 E-value=2.5e-08 Score=80.96 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .++.++..|.|+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l--~Gl~~p~~G~i~ 70 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLL--AGLETPSAGELL 70 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 467899999999999999999999999999 777788888775
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.63 E-value=3e-08 Score=78.73 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=37.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| .|..++..|.|.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 61 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI--NLLEQPEAGTIR 61 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 3467899999999999999999999999999 677777778664
No 87
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.63 E-value=2.9e-08 Score=78.28 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| +|+.++..|.|+-
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~~ 61 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLI--QRFYVPENGRVLV 61 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEEE
Confidence 467899999999999999999999999999 7777777887653
No 88
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=2.7e-08 Score=82.14 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
++.+++++++++++|||+||+||||||+.| .++.+++.|.|.-
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I--~Gll~P~~GeI~i 67 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLI--LGLLRPDKGEILI 67 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHH--hccCCCCCCeEEE
Confidence 468899999999999999999999999999 8888888887743
No 89
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.8e-08 Score=78.52 Aligned_cols=42 Identities=33% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| +++.++..|.|.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 63 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIV 63 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCceEE
Confidence 467899999999999999999999999999 778888888764
No 90
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.63 E-value=2.5e-08 Score=82.69 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=39.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.++++.+++++||||+|||||+++| +++..+..|.|.-
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l--~gl~~p~~G~i~i 64 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKIL--AGLLKPTSGEILV 64 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCcCCCceEEEE
Confidence 3468999999999999999999999999999 8888888887654
No 91
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.63 E-value=3e-08 Score=78.98 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 61 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCL--AGRLAPDHGTAT 61 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777777778665
No 92
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.62 E-value=3.3e-08 Score=85.23 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCc
Q psy4669 3 LKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSV 82 (139)
Q Consensus 3 v~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 82 (139)
|+.|-+.+|-++...++.+ ..| .+.+ .+.++||....+ .+.++
T Consensus 3 ~~~~~k~fg~~~~~~~~~~-~~g-----------~~~~----~~~~~~g~~~~l---------------------~~vsf 45 (382)
T TIGR03415 3 FKNVDVVFGDQPAEALALL-DQG-----------KTRE----EILDETGLVVGV---------------------ANASL 45 (382)
T ss_pred EEeeEEeeCCCHHHHHHHH-HcC-----------CCHH----HHHHhhCCEEEE---------------------EeeEE
Confidence 4445556677777775544 454 1112 467778765432 24678
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.++++.+++|||+||||||||+++| .++.++..|.|+-
T Consensus 46 ~i~~Gei~~I~G~nGsGKSTLlr~L--~Gl~~p~~G~I~i 83 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAV--NGLNPVSRGSVLV 83 (382)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence 9999999999999999999999999 7778888887643
No 93
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.62 E-value=3.1e-08 Score=80.18 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+|||||||||++| +++.++..|.|+
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~Gl~~p~~G~i~ 71 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKML--AGMIEPTSGELL 71 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 467899999999999999999999999999 788888888775
No 94
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.62 E-value=3.4e-08 Score=76.53 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=38.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|++|+|||||+++| +++.++..|.|+
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 66 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILAL--FRFLEAEEGKIE 66 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCeEE
Confidence 3467899999999999999999999999999 777788888765
No 95
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.62 E-value=3e-08 Score=77.37 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++++++|+|+||+||||||++| .++.++..|.|.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 59 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAI--LGEMQTLEGKVH 59 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCeEE
Confidence 3467899999999999999999999999999 677777777654
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.62 E-value=3.1e-08 Score=78.84 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-----cccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-----FGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-----~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| +|+.++. .|.|+-
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSL--NRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHH--hccCCCCcCCCCceEEEE
Confidence 467899999999999999999999999999 7777665 787753
No 97
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.62 E-value=3e-08 Score=73.77 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| .+..++..|.|+-
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~~ 59 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLI--AGELEPDEGIVTW 59 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCceEEEE
Confidence 357899999999999999999999999999 8888888998764
No 98
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.62 E-value=3.6e-08 Score=79.55 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++++++|+|+||+||||||++| +++.++..|.|+
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 69 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLL--LGLEKPAQGTVS 69 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 3468899999999999999999999999999 777777788664
No 99
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=3.5e-08 Score=77.20 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||||||||+++| ++..++..|.|+-
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~~ 70 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVL--AGLLHVESGQIQI 70 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCCeeEEE
Confidence 467899999999999999999999999999 7788888887643
No 100
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.9e-08 Score=80.61 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+||||||++| +++.++..|.|.
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~p~~G~i~ 65 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLL--NGLHVPTQGSVR 65 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777788764
No 101
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.61 E-value=3.1e-08 Score=79.01 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++..+..|.|+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQ 58 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777778888764
No 102
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.9e-08 Score=81.26 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=38.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L--~Gl~~p~~G~i~ 65 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI--NALLKPTTGTVT 65 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 3468899999999999999999999999999 778888888664
No 103
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.61 E-value=3.4e-08 Score=78.46 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +++.++..|.|.
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i--~Gl~~p~~G~i~ 79 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKIL--SGLLQPTSGEVR 79 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence 467899999999999999999999999999 777777788664
No 104
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=3e-08 Score=76.41 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=36.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.++.++++++++|+|+||||||||+++| .++.++..|.+.-
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~~ 59 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMI--AGIMQPSSGNIYY 59 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEEE
Confidence 6789999999999999999999999999 7777888887763
No 105
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.61 E-value=3e-08 Score=75.43 Aligned_cols=42 Identities=33% Similarity=0.493 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|++|+|||||+++| .+..++..|.|.
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~ 60 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLL--TGDLKPQQGEIT 60 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCEEE
Confidence 467899999999999999999999999999 777888888764
No 106
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.61 E-value=3.3e-08 Score=81.52 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||+|||||+++| +++.++..|.|+
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l--~Gl~~p~~G~i~ 62 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARML--LGMISPDRGKIT 62 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 468899999999999999999999999999 777788888775
No 107
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3.1e-08 Score=81.01 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| ++..++..|.|+
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 69 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLT--NGLIISETGQTI 69 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 467899999999999999999999999999 777778888764
No 108
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.4e-08 Score=77.68 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||+|||||+++| .|+.++..|.|.-
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~v~~ 60 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFYDVSSGSILI 60 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCEEEE
Confidence 467899999999999999999999999999 7788888887753
No 109
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.3e-08 Score=80.21 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.++..|.|+
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L--~Gl~~p~~G~i~ 82 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCI--NRLIEPTSGKVL 82 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 357899999999999999999999999999 777888888764
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.9e-08 Score=81.45 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.++++.+.+|.+++|+|+||||||||+++| .|+.++..|.|+
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l--~Gl~~p~~G~i~ 65 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHL--NGLLKPTSGKII 65 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCccEEE
Confidence 3468899999999999999999999999999 778888888663
No 111
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3e-08 Score=80.46 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| +++.++..|.|+
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 65 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKAL--MGFVRLASGKIS 65 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777777778764
No 112
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3e-08 Score=84.31 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~i--aGl~~p~~G~I~ 62 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMV--AGLERITSGEIW 62 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHH--HCCCCCCceEEE
Confidence 367899999999999999999999999999 777788888765
No 113
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.61 E-value=3.7e-08 Score=76.74 Aligned_cols=43 Identities=30% Similarity=0.339 Sum_probs=38.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|+||+|||||+++| ++..++..|.|.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 62 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRLVELSSGSIL 62 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCCEEE
Confidence 3468899999999999999999999999999 677778888775
No 114
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.61 E-value=2.3e-08 Score=95.49 Aligned_cols=42 Identities=50% Similarity=0.540 Sum_probs=36.8
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEeee
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~~ 133 (139)
...+|++| ||||||+||+++++..|+||||||||||+|.++.
T Consensus 466 ~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~ 507 (1049)
T PRK14845 466 IANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDV 507 (1049)
T ss_pred eeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecc
Confidence 34456665 9999999999999999999999999999999863
No 115
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.61 E-value=3.1e-08 Score=80.23 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+||||||++| +++.++..|.|.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 65 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLI--GGQIAPDHGEIL 65 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 777777888764
No 116
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.60 E-value=3.5e-08 Score=77.28 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +|..++..|.|.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 58 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMI--TGILRPTSGEII 58 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 457899999999999999999999999999 777788888764
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.8e-08 Score=79.42 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .|+.++..|.|.
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 69 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKML--GRHQPPSEGEIL 69 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEE
Confidence 467899999999999999999999999999 777788888764
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.2e-08 Score=78.77 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+|||||+++| .++.++..|.|.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 63 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCL--TGFYKPTGGTIL 63 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHH--hCCcCCCcceEE
Confidence 467899999999999999999999999999 777788888665
No 119
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.2e-08 Score=81.05 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=38.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.+|.+++|+|+||+||||||++| .++.++..|.|+
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l--~Gl~~p~~G~i~ 65 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHF--NALLKPSSGTIT 65 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 3468899999999999999999999999999 788888888664
No 120
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.3e-08 Score=80.49 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=37.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|+||+||||||++| .|+.++..|.|+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 60 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHL--NGLLRPQKGKVL 60 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 3468899999999999999999999999999 777777888664
No 121
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.4e-08 Score=79.88 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||+|||||+++| +|+.++..|.|+
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i--~Gl~~~~~G~i~ 67 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLM--IGIEKVKSGEIF 67 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 467899999999999999999999999999 777777788665
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.60 E-value=3.9e-08 Score=79.18 Aligned_cols=42 Identities=31% Similarity=0.490 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.++..|.|+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~p~~G~i~ 60 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRAL--SGELSPDSGEVR 60 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 467899999999999999999999999999 777777888764
No 123
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.60 E-value=4e-08 Score=78.71 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=38.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||+|||||+++| .|+.++..|.|+-
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~~ 60 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLL--AGALRPDAGTVDL 60 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEEE
Confidence 467899999999999999999999999999 7888888887653
No 124
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.60 E-value=4e-08 Score=76.93 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=38.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|.
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 72 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVL 72 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCcEEE
Confidence 3568899999999999999999999999999 777777888764
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.3e-08 Score=80.76 Aligned_cols=42 Identities=36% Similarity=0.427 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.+|.+++|+|+||+|||||+++| .|..++..|.|+
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i--~G~~~p~~G~i~ 65 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLL--NGLLLPEAGTIT 65 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence 468899999999999999999999999999 778888888775
No 126
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.60 E-value=4.7e-08 Score=77.06 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| .++. ++..|.|.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~ 60 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTI--AGHPSYEVTSGTIL 60 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCcceEE
Confidence 467899999999999999999999999999 6653 46677664
No 127
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.3e-08 Score=80.48 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 63 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHL--NGIYLPQRGRVK 63 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCceEEE
Confidence 467899999999999999999999999999 777788888764
No 128
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.59 E-value=4.7e-08 Score=77.14 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=36.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc----ccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS----EFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~----e~G~It 121 (139)
+.++.+.++.+++|+|+||+|||||+++| .+..++ ..|.|+
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~~~~~G~i~ 48 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAI--LGLLPPGLTQTSGEIL 48 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCccCccccEEE
Confidence 57889999999999999999999999999 777776 678764
No 129
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.7e-08 Score=80.41 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .|+.++..|.|+
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 65 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLI--DGLLEAESGQII 65 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 468899999999999999999999999999 788888888764
No 130
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.59 E-value=4.2e-08 Score=78.64 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=37.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 64 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNAL--SARLAPDAGEVH 64 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 467899999999999999999999999999 777777777653
No 131
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.58 E-value=4.2e-08 Score=81.43 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++++||||+|||||+++| +++..+..|.++
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l--~Gl~~p~~G~v~ 65 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRML--LGLTHPDAGSIS 65 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 468899999999999999999999999999 788888888764
No 132
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.58 E-value=4.2e-08 Score=77.53 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~ 80 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLL--AGIYPPDSGTVT 80 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 357899999999999999999999999999 778888888775
No 133
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.58 E-value=4.5e-08 Score=76.61 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|.
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l--~G~~~~~~G~i~ 63 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLI--GGLRSVQEGSLK 63 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 467899999999999999999999999999 777788888664
No 134
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.1e-08 Score=81.67 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=39.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+.++.+++|+|+||||||||+++| +|+.++..|.|+-
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L--~Gl~~p~~G~i~~ 66 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHL--NALLLPDTGTIEW 66 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence 3468899999999999999999999999999 8888888888754
No 135
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.1e-08 Score=80.56 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=38.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+||||+|||||+++| .|+.++..|.|+-
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 65 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHL--NGLLQPTEGKVTV 65 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHH--hcCCCCCCcEEEE
Confidence 468999999999999999999999999999 7778888887643
No 136
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.9e-08 Score=77.02 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=36.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.++.+++|+|+||||||||+++| +++.++..|.|.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 57 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLI--AGFLTPASGSLT 57 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 67899999999999999999999999999 777777778664
No 137
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=4.1e-08 Score=76.45 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=36.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| +++.+ +..|.|+
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~~~~G~i~ 68 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKAL--ANRTEGNVSVEGDIH 68 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHh--cccCCCCCCcceEEE
Confidence 467899999999999999999999999999 77777 6778665
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.7e-08 Score=78.21 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=37.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|.
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 60 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCF--ARLLTPQSGTVF 60 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCCcEEE
Confidence 467899999999999999999999999999 777777778664
No 139
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=5.1e-08 Score=75.88 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=35.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.+ ++++|+|+||+|||||+++| .++.++..|.|.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 55 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCI--AGLEKPDGGTIV 55 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 67899999 99999999999999999999 777777788664
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.5e-08 Score=79.37 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~ 67 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKIL--TGLLKPQSGEIK 67 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 467899999999999999999999999999 777777778664
No 141
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=3.9e-08 Score=82.91 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| +++.++..|.|+
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L--~Gl~~p~~G~I~ 63 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCI--NLLERPTSGRVL 63 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 778888888764
No 142
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.57 E-value=5.4e-08 Score=75.63 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=36.3
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++++++++|+|+||+|||||+++| +++.++..|.|.-
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 58 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKIL--AGQLIPNGDNDEW 58 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCCcEEEE
Confidence 368899999999999999999999999 8888888898864
No 143
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.57 E-value=5.8e-08 Score=78.37 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +|..++..|.|+
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 65 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTL--SRLMTPAHGHVW 65 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCcEEE
Confidence 467899999999999999999999999999 777788888765
No 144
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=5.7e-08 Score=76.73 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|+
T Consensus 16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~g~~~~~~G~i~ 58 (232)
T cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLI--AGFETPTSGEIL 58 (232)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 3467899999999999999999999999999 777788888664
No 145
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.3e-08 Score=83.28 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|||||||||||++| .|+.++..|.|+
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~ 64 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLV--AGLEKPTEGQIF 64 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--HCCCCCCceEEE
Confidence 357899999999999999999999999999 777888888764
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=5.1e-08 Score=79.51 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=38.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| +|+.++..|.|+
T Consensus 26 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 68 (280)
T PRK13633 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHM--NALLIPSEGKVY 68 (280)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 3468899999999999999999999999999 777788888765
No 147
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.57 E-value=4e-08 Score=83.46 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=36.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++.+.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~i--aGl~~p~~G~I~ 62 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRII--AGLERQTAGTIY 62 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--HCCCCCCceEEE
Confidence 57899999999999999999999999999 777777778765
No 148
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.56 E-value=4.3e-08 Score=79.08 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .++.++..|.|.
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i--~Gl~~p~~G~i~ 62 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVV--LGLVAPDEGVIK 62 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 357899999999999999999999999999 777777888774
No 149
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=4.8e-08 Score=79.46 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .|+.++..|.|+
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~ 60 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHF--NGILKPTSGEVL 60 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence 467899999999999999999999999999 777888888764
No 150
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=4.5e-08 Score=79.73 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=38.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.+|.+++|+|+||+|||||+++| +|..++..|.|+
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~Gl~~p~~G~i~ 62 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHF--NGILKPTSGSVL 62 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 3468899999999999999999999999999 777788888764
No 151
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.56 E-value=4.9e-08 Score=78.23 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|+
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 63 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGSIV 63 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 467899999999999999999999999999 777777788664
No 152
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.56 E-value=4.8e-08 Score=82.61 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=38.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+++|.+++++||||+|||||+++| +++..+..|.|.
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L--~Gl~~p~~G~i~ 99 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMI--LGMTSPDAGKIT 99 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCceEEE
Confidence 3468899999999999999999999999999 788888888765
No 153
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.56 E-value=4.7e-08 Score=83.34 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| +|+.++..|.|+
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~i--aGl~~p~~G~I~ 61 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMI--AGLEDITSGDLF 61 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777788888775
No 154
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=5.7e-08 Score=77.40 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| +++.++ ..|.|+
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~~~~~~G~i~ 67 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTF--NRLLELNEEARVEGEVR 67 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCcccCCCCceEEE
Confidence 3467899999999999999999999999999 666654 367664
No 155
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=5.8e-08 Score=79.39 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=39.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.++++.++++++++++|+||+||||||++| .++.+...|.|+-
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti--~Gl~~~~~G~I~~ 62 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTI--MGLVRPRSGRIIF 62 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeeEEE
Confidence 468899999999999999999999999999 8899998998874
No 156
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.55 E-value=5.2e-08 Score=82.71 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=37.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| .++.++..|.|.
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I--~gl~~p~~G~I~ 63 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTSGSVI 63 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 468899999999999999999999999999 777777777664
No 157
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.55 E-value=6.2e-08 Score=76.14 Aligned_cols=43 Identities=35% Similarity=0.491 Sum_probs=36.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It 121 (139)
-.+.++.+.++++++|+|+||+|||||+++| ++..+ +..|.|+
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l--~G~~~~~~~~~G~i~ 68 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAI--SGRVEGGGTTSGQIL 68 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHH--hCccCCCCCCceEEE
Confidence 3467899999999999999999999999999 66666 6677654
No 158
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.55 E-value=5e-08 Score=82.92 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| +|+.++..|.|+
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~ 60 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRII--AGLEHQTSGHIR 60 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 357899999999999999999999999999 777788888764
No 159
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.55 E-value=4.6e-08 Score=80.74 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||+|||||+++| .|+..+..|.|.
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l--~Gl~~~~~G~i~ 60 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKII--TGYLPPDSGSVQ 60 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 778888888764
No 160
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.55 E-value=5.2e-08 Score=83.61 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=36.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~I--aGl~~p~~G~I~ 72 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLI--AGFETPDSGRIM 72 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence 357899999999999999999999999999 777777777664
No 161
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.55 E-value=7e-08 Score=74.69 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It 121 (139)
-.+.++.+.++.+++|+|++|+|||||+++| +++. ++..|.|.
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i--~Gl~~~~~~~G~i~ 69 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNAL--AGRRTGLGVSGEVL 69 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCceEEE
Confidence 3467899999999999999999999999999 7777 77788764
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.54 E-value=6.3e-08 Score=75.47 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 56 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLI--AGFIEPASGSIK 56 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 367899999999999999999999999999 777888888664
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6e-08 Score=78.97 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.+|++++|+|+||+|||||+++| +|..++..|.|+
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 65 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLI--DGLFEEFEGKVK 65 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCCEEE
Confidence 468899999999999999999999999999 777788888764
No 164
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.54 E-value=5.2e-08 Score=83.42 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|+|||||||||++| .++.++..|.|.
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L--~Gl~~p~~G~I~ 51 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIF 51 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHH--hCCCCCCceEEE
Confidence 467899999999999999999999999999 777888888664
No 165
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=5.2e-08 Score=79.74 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.++++.++++.|+++||||||||||||+++..
T Consensus 23 L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred hccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 457899999999999999999999999999964
No 166
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=6.7e-08 Score=79.02 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.+|.+++|+|+||+|||||+++| +++.++..|.|+
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i--~Gl~~p~~G~i~ 64 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNL--NGILKPSSGRIL 64 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCccEEE
Confidence 467899999999999999999999999999 778888888764
No 167
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=5.9e-08 Score=79.71 Aligned_cols=43 Identities=33% Similarity=0.497 Sum_probs=37.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|.
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 65 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHL--NGLLQPTSGTVT 65 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence 3468899999999999999999999999999 777788888663
No 168
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.53 E-value=2.2e-08 Score=82.43 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=40.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++++++++||||+|||||+|+| +++.++..|.|+-
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNli--tG~~~P~~G~v~~ 63 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLI--TGFYKPSSGTVIF 63 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeee--cccccCCCceEEE
Confidence 467899999999999999999999999999 9999999998865
No 169
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.53 E-value=7.4e-08 Score=78.58 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=38.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||+|||||+++| +|+.++..|.|+-
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L--~Gl~~p~~G~I~~ 83 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNII--GGSLSPTVGKVDR 83 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEEE
Confidence 357899999999999999999999999999 8888888887753
No 170
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=6.8e-08 Score=80.92 Aligned_cols=44 Identities=25% Similarity=0.460 Sum_probs=39.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.++++.+++|+|+||||||||+++| .++..+..|.|+-
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L--~Gl~~p~~G~I~i 85 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHF--NGLIKSKYGTIQV 85 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence 3568899999999999999999999999999 7888888887753
No 171
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.52 E-value=6.3e-08 Score=81.92 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=36.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.++++++|+|||||||||||++| .|+.++..|.|+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i--aGl~~p~~G~I~ 56 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAI--SGLTRPQKGRIV 56 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 57899999999999999999999999999 777777888765
No 172
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=8.8e-08 Score=77.97 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=39.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
++.++.+..+..++++||||||||||||.+ +++..+..|.|+-+
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~--AGf~~P~~G~i~l~ 65 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLI--AGFVTPSRGSIQLN 65 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHH--hcCcCcccceEEEC
Confidence 468899999999999999999999999999 88888888887543
No 173
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.52 E-value=8.7e-08 Score=77.70 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=37.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| .++.++..|.|+
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~sG~i~ 70 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLL--VGLESPSQGNVS 70 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 3468899999999999999999999999999 677777778664
No 174
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=8.8e-08 Score=76.49 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=35.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.++++++++|+|+||||||||+++| .++.++ ..|.|.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTL--NRMNDLVEGIKIEGNVI 70 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHH--hccccCCcCCCCceEEE
Confidence 468899999999999999999999999999 666554 356554
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=7.2e-08 Score=78.80 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=36.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc---ccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF---GGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~---G~It 121 (139)
-.+.++.++++.+++|+|+||||||||+++| .|+.++.. |.|+
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l--~G~~~p~~g~~G~i~ 68 (282)
T PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLI--NGLLLPDDNPNSKIT 68 (282)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcccCCCCCCCcEEE
Confidence 3467899999999999999999999999999 77776665 5554
No 176
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=9.1e-08 Score=78.77 Aligned_cols=43 Identities=30% Similarity=0.415 Sum_probs=39.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++..++|+||||+||||||+.| +++.++..|.+.=
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkli--aGi~~Pt~G~v~v 86 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLI--AGIYKPTSGKVKV 86 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHH--hCccCCCCceEEE
Confidence 478999999999999999999999999999 9999999997643
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.52 E-value=8.8e-08 Score=78.35 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE 116 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e 116 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.++.
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--aG~~~p~ 54 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGG 54 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCc
Confidence 467899999999999999999999999999 6766665
No 178
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.51 E-value=9.6e-08 Score=76.54 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++ ..|.|.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~~~G~i~ 65 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAA--LGILPAGVRQTAGRVL 65 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCcCCEEE
Confidence 467899999999999999999999999999 777666 667654
No 179
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=7.9e-08 Score=77.06 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=35.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| +|+..+ ..|.|+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--aGl~~~~~~~~~~G~I~ 67 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTL--NRMHEVIPGARVEGEVL 67 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCcccCCCcceEEE
Confidence 467899999999999999999999999999 555542 467664
No 180
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=6.9e-08 Score=82.83 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~ 77 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRML--AGFEQPTAGQIM 77 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence 357899999999999999999999999999 777788888765
No 181
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.51 E-value=8.6e-08 Score=76.08 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| ++..++..|.|+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~ 58 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRII--AGLEQPDSGRIR 58 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 467899999999999999999999999999 777778888764
No 182
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.50 E-value=9.8e-08 Score=83.04 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +++.++..|.|+
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--~G~~~p~~G~i~ 61 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARAL--AGELPLLSGERQ 61 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCceEE
Confidence 468899999999999999999999999999 777778888775
No 183
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=8.9e-08 Score=75.92 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++..|.++
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l--~G~~~p~~G~v~ 57 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETI--AGFIKPDSGKIL 57 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence 467899999999999999999999999999 777777778654
No 184
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=8.8e-08 Score=76.19 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=34.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.++ ..|.|.
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~ 66 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIY 66 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHH--hccccCCCCCCcceEEE
Confidence 467899999999999999999999999999 555542 567554
No 185
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.50 E-value=1.2e-07 Score=75.42 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=35.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| +++ .++..|.|+
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~G~i~ 67 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVI--AGHPAYKILEGDIL 67 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHH--cCCCcCcCCCceEE
Confidence 467899999999999999999999999999 554 356677654
No 186
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.1e-07 Score=70.76 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++++++|+|++|+|||||+++| .+......|.++-
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l--~g~~~~~~G~i~~ 58 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAI--AGLLKPTSGEILI 58 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCccEEEE
Confidence 356889999999999999999999999999 7777788887753
No 187
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.49 E-value=8.3e-08 Score=81.14 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=36.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+.++++++|+|+|||||||||++| .++.++..|.|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~i--aGl~~p~~G~I~ 55 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLI--AGLTRPDEGEIV 55 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 57889999999999999999999999999 777777888764
No 188
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.1e-07 Score=75.67 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=35.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| +|..++ ..|.|.
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~ 66 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVF--NRLIELYPEARVSGEVY 66 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCCCCceEEE
Confidence 467899999999999999999999999999 565542 467654
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=7.8e-08 Score=83.35 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=36.9
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|+|||||||||++| .++.++..|.|+
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I--~Gl~~p~sG~I~ 86 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVL 86 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCCEEE
Confidence 46899999999999999999999999999 778888888764
No 190
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.49 E-value=9.3e-08 Score=81.64 Aligned_cols=42 Identities=31% Similarity=0.465 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc--ccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--GGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~--G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| +++.++.. |.|.
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~~~G~i~ 65 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAI--AGFVKAAGLTGRIA 65 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCEEEE
Confidence 467899999999999999999999999999 77778877 8764
No 191
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=9.7e-08 Score=76.07 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.+.++.+++|+|+||+||||||++|.+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999999999999999944
No 192
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.49 E-value=1.2e-07 Score=75.92 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.+. .|.|+
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l--~Gl~~~-~G~i~ 53 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARM--AGLLPG-SGSIQ 53 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCC-CeEEE
Confidence 467899999999999999999999999999 666554 67664
No 193
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.49 E-value=1.3e-07 Score=74.95 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=35.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| ++.. ++..|.|.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~ 61 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATL--AGREDYEVTGGTVE 61 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHH--cCCccCCCCceEEE
Confidence 467899999999999999999999999999 6663 46677653
No 194
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.49 E-value=9.7e-08 Score=79.93 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=38.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-++.++.++.+++++++|||||||||+|+.| .++..+..|.|.
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMI--NrLiept~G~I~ 59 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI--NRLIEPTSGEIL 59 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHH--hcccCCCCceEE
Confidence 3568999999999999999999999999999 778888888765
No 195
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.2e-07 Score=78.05 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=40.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
-.++++.+.+|++++|+|+||||||||.++| .++..+..|.|+-+
T Consensus 23 l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l--~Gl~~p~~G~I~~~ 67 (252)
T COG1124 23 LNNVSLEIERGETLGIVGESGSGKSTLARLL--AGLEKPSSGSILLD 67 (252)
T ss_pred hcceeEEecCCCEEEEEcCCCCCHHHHHHHH--hcccCCCCceEEEC
Confidence 3468999999999999999999999999999 88888888888654
No 196
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.2e-07 Score=73.13 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=34.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||+||||||++|.+....++..|.|.
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~ 67 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL 67 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence 46789999999999999999999999999944222235667654
No 197
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.3e-07 Score=80.57 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=38.5
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
+.++.++.++.++++|||||||||||++| +|+..++.|.|.-+
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiI--AGLe~p~~G~I~~~ 62 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRII--AGLETPDAGRIRLN 62 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHH--hCcCCCCCceEEEC
Confidence 68899999999999999999999999999 77888888877643
No 198
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.2e-07 Score=82.93 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.++++.+++|+|+|||||||||++| ++..++..|.|.-
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~p~~G~I~~ 322 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRL 322 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCcCCCCeEEE
Confidence 3568899999999999999999999999999 7777777787753
No 199
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=83.22 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+..+.+++|+|+|||||||||++| +++.++..|.|+
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i--~Gl~~p~~G~i~ 63 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVL--SGIHEPTKGTIT 63 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCcCCCccEEE
Confidence 468899999999999999999999999999 777777778764
No 200
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.48 E-value=1.5e-07 Score=75.92 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=34.0
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+..+.++.+++|+|+||+|||||+++| ++..++..|.|.
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L--~G~~~p~~G~i~ 57 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKML--AGVLKPDEGDIE 57 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCCeEE
Confidence 345678999999999999999999999 778888888775
No 201
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.1e-07 Score=78.36 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=37.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-+++++.++++++|+|+|+||+||||||++| .++..+..|.|.
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~l--ngl~d~t~G~i~ 62 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSL--NGLVDPTSGEIL 62 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHH--hcccCCCcceEE
Confidence 4568999999999999999999999999999 667777777653
No 202
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.2e-07 Score=76.81 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=35.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| +++.+ +..|.|+
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~p~~G~v~ 76 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSL--NRMNDLIEGCSLKGRVL 76 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence 467899999999999999999999999999 55544 3566654
No 203
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.47 E-value=1.7e-07 Score=72.79 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=36.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .+. ..+..|.|+
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~p~~G~i~ 60 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTI--MGHPKYEVTEGEIL 60 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHH--hCCCcCCCCccEEE
Confidence 467899999999999999999999999999 555 356777665
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.3e-07 Score=75.43 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.++ ..|.|+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCL--NRMNDLISNVKIEGEVL 67 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCcccCCCCccEEE
Confidence 467899999999999999999999999999 555442 567665
No 205
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.2e-07 Score=76.13 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=34.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.. +..|.|+
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTF--NRMYELYPEQRAEGEIL 76 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcccccCCCCCcceEEE
Confidence 467899999999999999999999999999 55553 3466553
No 206
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.4e-07 Score=83.11 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| .+..++..|.|+
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~Gl~~p~~G~i~ 59 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKIL--GGDLEPSAGNVS 59 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 468899999999999999999999999999 777778888875
No 207
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.47 E-value=1.2e-07 Score=82.89 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|||||||||||++| .++.++..|.|+
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~G~i~ 62 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVL--TGIYTRDAGSIL 62 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 777777788765
No 208
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.4e-07 Score=76.12 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=35.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.+.++.+.++++++|+|++|+|||||++.| +|..++..|.|
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--aG~~~~~~G~v 67 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVL--NRLIEIYDSKI 67 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCcCce
Confidence 467899999999999999999999999999 77777776644
No 209
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.6e-07 Score=74.65 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
-.+.++.+.++.+++|+|+||+|||||+++| +++.++
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~ 56 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAI--NRMHDL 56 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCC
Confidence 3467899999999999999999999999999 665543
No 210
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.3e-07 Score=76.37 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||+|||||+++| +|+.. +..|.|+
T Consensus 37 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~ 84 (268)
T PRK14248 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI--NRMNDLIPSARSEGEIL 84 (268)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHH--HhcccccCCCCCceEEE
Confidence 3467899999999999999999999999999 54432 4567553
No 211
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.46 E-value=9.7e-08 Score=77.27 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| +|+.++ ..|.|+
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~I~ 82 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL--NRMNDTIDGCRVTGKIT 82 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccccCCCCceEEE
Confidence 467899999999999999999999999999 555542 567665
No 212
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.46 E-value=1.4e-07 Score=77.78 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=38.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|+-
T Consensus 53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I--~Gl~~p~~G~I~i 96 (282)
T cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLI--LGELEPSEGKIKH 96 (282)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence 3467899999999999999999999999999 7788888887753
No 213
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.46 E-value=1.7e-07 Score=73.85 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=32.2
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|+|+||||||||+++| ++..++..|.|+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~ 38 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAI--LGLIPPAKGTVK 38 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 4678999999999999999999999 777777777665
No 214
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.4e-07 Score=74.97 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| +++.. + ..|.|+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~ 66 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTL--NRMNDLIPSVKIEGEVL 66 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence 467899999999999999999999999999 55433 1 456554
No 215
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.46 E-value=1.1e-07 Score=82.41 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+||||+||||||++| +++.++..|.|+
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~L--aGll~p~sG~I~ 61 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAI--NGTLTPTAGTVL 61 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHH--hcCCCCCCcEEE
Confidence 357899999999999999999999999999 778888888765
No 216
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.4e-07 Score=75.78 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++.++ ..|.|.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~ 75 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCL--NRMNDLIKNCRIEGKVS 75 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCcccCCCcceEEE
Confidence 467899999999999999999999999999 555543 567654
No 217
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.45 E-value=1.2e-07 Score=76.12 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|++|+|||||+++| .++.++..|.|+
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~ 79 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAF--FRMVDIFDGKIV 79 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHH--HcccCCCCCeEE
Confidence 467899999999999999999999999999 777788888775
No 218
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.5e-07 Score=83.87 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=38.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|||||||||||++| +|..++..|.|+-
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l--~G~~~p~~G~i~~ 371 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLL--AGELAPVSGEIGL 371 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence 568899999999999999999999999999 7888888888764
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.45 E-value=1.6e-07 Score=75.37 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.++. .|.|+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~p~~~~~G~i~ 65 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHL--SGLITGDKSAGSHIE 65 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCCCCCCceEEE
Confidence 467899999999999999999999999999 6666543 36553
No 220
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.45 E-value=1.6e-07 Score=84.87 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| +|...+..|.|+-
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLrii--aG~~~p~~G~I~~ 62 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKIL--NGEVLLDDGRIIY 62 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCeEEEe
Confidence 468899999999999999999999999999 7888888898864
No 221
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.45 E-value=1.4e-07 Score=75.93 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
..-+..++.+++++|+||||+||||||+.| +|+..+..|.|.
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLI--AGF~~P~~G~i~ 57 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLI--AGFETPASGEIL 57 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHH--HhccCCCCceEE
Confidence 345678999999999999999999999999 778888888764
No 222
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.5e-07 Score=74.76 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
-.+.++.+.++.+++|+|+||+|||||+++| ++..+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~ 54 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCL--NRMND 54 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHH--Hhhcc
Confidence 3468899999999999999999999999999 55544
No 223
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-07 Score=75.17 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| +|+.. +..|.|+
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~ 68 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCF--NRMNDFVPNCKVKGELD 68 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccCCCCCcceEEE
Confidence 467899999999999999999999999999 55543 2467654
No 224
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.8e-07 Score=84.84 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=39.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| +|...+..|.|+-
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL--~G~~~pd~G~I~~ 60 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALL--KNEISADGGSYTF 60 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEe
Confidence 468999999999999999999999999999 7788888898864
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-07 Score=76.59 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=35.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.+|.+++|+|+||+|||||+++| .|+.+ +..|.|+
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~ 87 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTL--NRMVELVPSVKTTGKIL 87 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhccCCCCCCCceeEE
Confidence 467899999999999999999999999999 56554 4667664
No 226
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.7e-07 Score=74.58 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.+ +..|.|.
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~p~~~~~G~v~ 67 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIENIKITGEIK 67 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hhccccccCCCcceEEE
Confidence 457899999999999999999999999999 55554 2466553
No 227
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.9e-07 Score=81.70 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .+..++..|.|+
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l--~G~~~p~~G~i~ 311 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLL--YGATRRTAGQVY 311 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHH--cCCCcCCCceEE
Confidence 567899999999999999999999999999 777787888776
No 228
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.9e-07 Score=74.45 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=32.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE 116 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e 116 (139)
.+.++.+.++.+++|+|+||+|||||+++| ++..++.
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~ 57 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIV 57 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCcc
Confidence 467899999999999999999999999999 6666654
No 229
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.7e-07 Score=81.72 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||||||||+++| +++.++..|.|+
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~ 56 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCL--FGIYQKDSGSIL 56 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCceEEE
Confidence 467899999999999999999999999999 778888888775
No 230
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.7e-07 Score=78.78 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=37.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.++++.+.++++++|+|+||||||||+++| .++.++..|.|.
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l--~gl~~p~~G~i~ 73 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLL--TMIETPTGGELY 73 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHH--HcCCCCCCcEEE
Confidence 3468999999999999999999999999999 677777777664
No 231
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.43 E-value=1.9e-07 Score=82.95 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=38.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+..+.+++|+|+|||||||||++| .|..++..|.|.
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i--~G~~~p~~G~i~ 65 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIM--AGVDKEFEGEAR 65 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence 468999999999999999999999999999 778888888875
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.43 E-value=1.5e-07 Score=82.67 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=37.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| .|+.++..|.|.
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~Gl~~p~~G~i~ 69 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKII--AGIVPPDSGTLE 69 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 468899999999999999999999999999 778888888775
No 233
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.5e-07 Score=76.15 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
-.+.++.+.++.+++|+|+|||||||||++| +|... +..|.|.
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDIARVTGQIL 83 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCccCCCCcceEEE
Confidence 3468899999999999999999999999999 55543 3567553
No 234
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2e-07 Score=74.79 Aligned_cols=43 Identities=28% Similarity=0.401 Sum_probs=39.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+..++.+.|.||||+||||||+.| +|+.+++.|.|.-
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRil--aGLl~p~~G~v~~ 61 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRIL--AGLLRPDAGEVYW 61 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHH--HcccCCCCCeEEe
Confidence 457899999999999999999999999999 8999999998754
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.42 E-value=1.6e-07 Score=82.33 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|+||||||||+++| .++.++..|.|+-
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKII--AGVLEPTSGEVNV 343 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEEE
Confidence 457889999999999999999999999999 7777777887764
No 236
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.42 E-value=2.2e-07 Score=82.40 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| +|..++..|.|.-
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i--~G~~~p~~G~i~~ 64 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIM--AGVDKEFNGEARP 64 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEe
Confidence 468999999999999999999999999999 7788888888763
No 237
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.9e-07 Score=81.34 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++++++|+|+||||||||+++| .+..++..|.|.
T Consensus 264 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 306 (491)
T PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETL--FGIREKSAGTIT 306 (491)
T ss_pred cceeeEEEeCCcEEEEecCCCCCHHHHHHHH--cCCCcCCccEEE
Confidence 3567899999999999999999999999999 777777778765
No 238
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2e-07 Score=74.38 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=34.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It 121 (139)
.+.++.++++++++|+|+||||||||+++| +++.+ + ..|.|+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~v~ 67 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSI--NRMHDLVPSARVTGKIL 67 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--HhcccCCCCCCCceEEE
Confidence 467899999999999999999999999999 55543 2 356554
No 239
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.4e-07 Score=75.58 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=34.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .++.. + ..|.|+
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~p~~~~~G~i~ 75 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTL--NLMIQMVPNVKLTGEMN 75 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhccCCCCCCCceEEE
Confidence 467899999999999999999999999999 44443 2 357654
No 240
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.42 E-value=1.6e-07 Score=72.98 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+.++.++++.+++|+|||||||||||++|.
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678999999999999999999999999983
No 241
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2.4e-07 Score=73.70 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc---ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS---EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~---e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++|.+.....+ ..|.|.
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~ 68 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence 46789999999999999999999999999944321223 367654
No 242
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.42 E-value=1.8e-07 Score=78.79 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++++++|+|+||||||||+++| .++.++..|.|.-
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i--~Gl~~p~~G~I~~ 80 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAI--IGLVKATDGEVAW 80 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--HCCCCCCCcEEEE
Confidence 468899999999999999999999999999 7777777887643
No 243
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2e-07 Score=81.60 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++..|.|.
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~ 62 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKIL--SGNYQPDAGSIL 62 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 467899999999999999999999999999 777777788764
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2e-07 Score=75.31 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .++.. +..|.|+
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~ 73 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCF--NRLNDLIPGFRVEGKVT 73 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--HhhhcccCCCCCceEEE
Confidence 467899999999999999999999999999 44432 2566654
No 245
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.41 E-value=2.2e-07 Score=74.21 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=39.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.+|+.++|+|||||||||||+.+ ..+..+..|.++-
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~v--a~Lisp~~G~l~f 62 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIV--ASLISPTSGTLLF 62 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHH--HhccCCCCceEEE
Confidence 457899999999999999999999999999 8889999998874
No 246
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.41 E-value=2.3e-07 Score=81.50 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--~Gl~~p~~G~i~ 321 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETL--YGLRPARGGRIM 321 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCcEEE
Confidence 3568899999999999999999999999999 778777788775
No 247
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.41 E-value=3.2e-07 Score=82.90 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| .+..++..|.|+-
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l--~G~~~p~~G~i~~ 378 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLM--LGQLQADSGRIHC 378 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence 467899999999999999999999999999 7778888888864
No 248
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.4e-07 Score=81.54 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=38.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+||||||++| .|+.++..|.|.
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i--~G~~~p~~G~i~ 377 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTL--VGELEPDSGTVK 377 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 467899999999999999999999999999 778888888875
No 249
>PLN03073 ABC transporter F family; Provisional
Probab=98.40 E-value=3.4e-07 Score=84.49 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| .+..++..|.|+
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L--~Gll~p~~G~I~ 567 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLI--SGELQPSSGTVF 567 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCceEE
Confidence 467899999999999999999999999999 788888889887
No 250
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.40 E-value=3e-07 Score=74.75 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.+ .+.++.+++|+|+||+||||||++| .++.++..|.|+
T Consensus 19 ~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l--~Gl~~p~~G~I~ 58 (255)
T cd03236 19 RLP-VPREGQVLGLVGPNGIGKSTALKIL--AGKLKPNLGKFD 58 (255)
T ss_pred cCC-CCCCCCEEEEECCCCCCHHHHHHHH--hCCcCCCCceEe
Confidence 455 4899999999999999999999999 888888899885
No 251
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.2e-07 Score=76.31 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=35.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| +++.+ +..|.|+
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~~~p~~G~I~ 102 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCI--NRMNDLIDAARVEGELT 102 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCcccCCCCceEEE
Confidence 467899999999999999999999999999 66554 4567654
No 252
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.3e-07 Score=73.88 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=35.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +++.. +..|.|+
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~G~i~ 63 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCF--NRMNDKIAKIDGLVE 63 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCCceEEE
Confidence 467899999999999999999999999999 55542 4567665
No 253
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.40 E-value=2.5e-07 Score=80.89 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=37.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++++++|+|+||||||||+++| .++.++..|.|.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~G~~~p~~G~I~ 310 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVL--YGALPRTSGYVT 310 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 3567899999999999999999999999999 777777777765
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.3e-07 Score=74.75 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=34.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++..+ ..|.|+
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCF--NRMHDLYPGNHYEGEII 79 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcccCCCCCCCcccEEE
Confidence 467899999999999999999999999999 555542 466654
No 255
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.6e-07 Score=74.46 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE 116 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e 116 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++.
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~ 60 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCL--NRMNELE 60 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHH--hcccCCC
Confidence 467899999999999999999999999999 5665543
No 256
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.5e-07 Score=75.56 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=35.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| +++.++ ..|.|+
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~p~~~~~~~G~i~ 84 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTL--NRMNDKVSGYRYSGDVL 84 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCcCCCCCCceEEE
Confidence 468899999999999999999999999999 666653 567654
No 257
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.39 E-value=2.8e-07 Score=81.75 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| .+..++..|.|.-
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~G~i~~ 381 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMI--TGQEQPDSGTIKI 381 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCeEEEE
Confidence 468899999999999999999999999999 7888888888864
No 258
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=2.4e-07 Score=77.69 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc----cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK----SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~----~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||||||||+++| .++.+ ...|.|.
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i--~Gl~~~~~~~~~G~i~ 69 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAI--CGVTKDNWRVTADRMR 69 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHH--HccCCCCCCCcceEEE
Confidence 3468899999999999999999999999999 55554 3456554
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.4e-07 Score=74.91 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=34.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.++++.+++|+|+||+|||||+++| .++..+ ..|.|+
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~~~~~~G~i~ 71 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSL--NRMNDLVKGFRFEGHVH 71 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcccccccCCCCceEEE
Confidence 467899999999999999999999999999 555543 466553
No 260
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.9e-07 Score=80.60 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=37.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~It 121 (139)
-.+.++.++++++++|+|+||||||||+++| +++.+ +..|.|.
T Consensus 278 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~~~~~G~i~ 321 (506)
T PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCL--FGAYPGRWEGEIF 321 (506)
T ss_pred ccceeeEEcCCcEEEEeCCCCCCHHHHHHHH--hCCCCCCCCcEEE
Confidence 3567899999999999999999999999999 77776 4678776
No 261
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.38 E-value=3e-07 Score=80.48 Aligned_cols=42 Identities=31% Similarity=0.361 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|++|||||||++.| .+..++..|.|.
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL--~g~~~p~~G~I~ 393 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLL--TGLLDPLQGEVT 393 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 567899999999999999999999999999 888899999885
No 262
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.6e-07 Score=75.75 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .|+.. +..|.|+
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L--~Gl~~~~p~~~~~G~I~ 102 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAI--NRMNDLIPSCHTTGALM 102 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccccCCCCCCceEEE
Confidence 467899999999999999999999999999 55432 2667654
No 263
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=3.6e-07 Score=72.76 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.+.++.+++|+|+||+|||||+++|.+
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999999999999944
No 264
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.1e-07 Score=73.29 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=29.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.++++.+++|+|+||+|||||+++|.+
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999999999999943
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.36 E-value=2.9e-07 Score=80.78 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=37.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+|||||||||++| .++. .+..|.|+-
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVL--RGMDQYEPTSGRIIY 61 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hhcccCCCCceEEEE
Confidence 468899999999999999999999999999 6664 567788764
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.36 E-value=3.3e-07 Score=79.97 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=36.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc--ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS--EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~--e~G~It 121 (139)
.+.++.+.++.+++|+|+|||||||||++| .++.++ ..|.|+
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i--~G~~~~~~~~G~i~ 61 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKIL--SGVYPHGTWDGEIY 61 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence 468899999999999999999999999999 666654 567664
No 267
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.36 E-value=3.6e-07 Score=79.70 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=36.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It 121 (139)
-.+.++.+.++++++|+|+|||||||||++| ++..++ ..|.|.
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~~G~i~ 319 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQAL--FGAYPGKFEGNVF 319 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence 3467899999999999999999999999999 777763 577775
No 268
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.36 E-value=2.8e-07 Score=77.54 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .++.++. .|.|.
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l--~Gl~~p~~~~sG~I~ 77 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFAL--MGLLAANGRIGGSAT 77 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCCCCeEEE
Confidence 468899999999999999999999999999 6766654 67654
No 269
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=4.2e-07 Score=74.56 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=38.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-++.++....+++++|+||||+||||||+.| +|-..++.|.++-
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~L--sGel~p~~G~v~~ 60 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKAL--SGELSPDSGEVTL 60 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHh--hCccCCCCCeEee
Confidence 4568899999999999999999999999999 8878888887653
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=3.4e-07 Score=80.22 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=36.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc--ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS--EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~--e~G~It 121 (139)
.+.++.+..+.+++|+|+||||||||+++| +++.++ ..|.|.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~ 65 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVL--SGVYPHGTYEGEII 65 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence 468899999999999999999999999999 666664 577664
No 271
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.35 E-value=3.6e-07 Score=81.19 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||+|||||+++| .+..++..|.|.-
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--~G~~~p~~G~i~~ 383 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMI--TGQEQPDSGTIKI 383 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEEE
Confidence 467899999999999999999999999999 7788888888764
No 272
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.2e-07 Score=73.69 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
.+.++.+.++++++|+|+||+|||||+++| .++.+
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l--~Gl~~ 58 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTL--NRISE 58 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcC
Confidence 467899999999999999999999999999 55544
No 273
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.2e-07 Score=82.80 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i--~Gl~~p~~G~I~ 382 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRAL--LRLVESQGGEII 382 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCcEEE
Confidence 467899999999999999999999999999 777777778775
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.1e-07 Score=82.91 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++.+++|+|+||||||||+++| .++.++..|.|+
T Consensus 32 l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l--~Gll~p~~G~i~ 74 (623)
T PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALAL--MRLLEQAGGLVQ 74 (623)
T ss_pred EEeeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCCeEEE
Confidence 3468999999999999999999999999999 777777777764
No 275
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=4.1e-07 Score=77.47 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=40.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh-----------------------cCCcccccccEEEEeeEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN-----------------------TSVVKSEFGGITQHIGAF 127 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~-----------------------~~v~~~e~G~Itq~i~ay 127 (139)
-++.++.++++.+.+|+|+||+|||||++++.. ..-++...|.|+||++-+
T Consensus 22 l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 356899999999999999999999999999963 112345677788887743
No 276
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3.4e-07 Score=74.29 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| +|+.+ +..|.|+
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l--aGl~~~~~~~~~~G~i~ 88 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCF--NRMNDLVDNCRIEGEIR 88 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--HhcCCCccCCCCceEEE
Confidence 467899999999999999999999999999 55544 2567664
No 277
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=3.9e-07 Score=74.07 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=38.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
-.+.++.+++++.++|+||+|||||||++.| .++..+..|.|
T Consensus 20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l--~GLl~p~~G~v 61 (235)
T COG1122 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLL--NGLLKPTSGEV 61 (235)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHH--cCcCcCCCCEE
Confidence 3468899999999999999999999999999 88888888887
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.34 E-value=4.1e-07 Score=79.15 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It 121 (139)
.+.++.+.++.+++|+||||||||||+++| +|..+. ..|.|+
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~G~~~~~~~G~i~ 319 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLI--TGDHPQGYSNDLT 319 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCcccCCeEE
Confidence 467899999999999999999999999999 555543 356543
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.34 E-value=3.6e-07 Score=80.45 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .++.++ ..|.|+
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~ 72 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSI--LRLLPSPPVVYPSGDIR 72 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHH--hcCCCCCcCCccceEEE
Confidence 468899999999999999999999999999 666654 467653
No 280
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.34 E-value=4e-07 Score=80.13 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++.+++|+|+||||||||+++| .++.+ ..|.|+
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l--~Gl~~-~~G~i~ 343 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLAL--LRLIN-SQGEIW 343 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHH--hCcCC-CCcEEE
Confidence 567899999999999999999999999999 66664 567765
No 281
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=4.3e-07 Score=73.97 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++| .++... ..|.|+
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCF--NRMNDLIPGAKVEGRLL 83 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hcccccccCCCcCceEE
Confidence 467899999999999999999999999999 554431 356554
No 282
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.33 E-value=4.3e-07 Score=80.28 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=38.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++..++|+|+||+|||||++.| .|+.++..|.|+
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll--~gl~~p~~G~I~ 401 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLL--TRFYDIDEGEIL 401 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHH--HhccCCCCceEE
Confidence 568899999999999999999999999999 888888888775
No 283
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.33 E-value=2.9e-07 Score=72.67 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++++.+++|+++||||||||||||..+.+
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G 50 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG 50 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHh
Confidence 4789999999999999999999999999965
No 284
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.32 E-value=1.1e-06 Score=63.95 Aligned_cols=45 Identities=69% Similarity=0.967 Sum_probs=39.8
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
|+++++|+.|+|||||+++|.+..+.....+++|++++.+.+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~ 45 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAE 45 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecc
Confidence 689999999999999999998877777777889999998888764
No 285
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=3.9e-07 Score=76.46 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
-+++++.+.++++++|+|+||||||||+++| .++.+
T Consensus 23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l--~Gll~ 58 (326)
T PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAI--MGLID 58 (326)
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCC
Confidence 3468999999999999999999999999999 55554
No 286
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=4.7e-07 Score=72.14 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.+.++.+++|+|+||+|||||+++|.+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46789999999999999999999999999954
No 287
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=5.1e-07 Score=73.54 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.+..++++.+++++||+|+||||||..+ +++.+.+.|.|+-
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~--sRL~~~d~G~i~i 60 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMM--SRLLKKDSGEITI 60 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHH--HHhccccCceEEE
Confidence 357889999999999999999999999999 8899999998863
No 288
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=4.9e-07 Score=71.89 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcC-Ccc--cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK--SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~--~e~G~It 121 (139)
.+.++.+.++.+++|+|+||+|||||+++|.+.. ..+ +..|.|+
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 66 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY 66 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence 4678999999999999999999999999994421 112 2567654
No 289
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.4e-07 Score=74.62 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
-.+.++.+.++.+++|+|+|||||||||++| .++.. +..|.|.
T Consensus 61 L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L--~Gl~~~~~~~p~~G~I~ 108 (305)
T PRK14264 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCL--NRMNDRIKAARIDGSVE 108 (305)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence 3467899999999999999999999999999 55543 3566554
No 290
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.28 E-value=6.2e-07 Score=73.80 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=36.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+.++++++|+|++|+|||||+++| .++.. ..|.|.
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L--~gl~~-~~G~I~ 61 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLN-TEGDIQ 61 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHH--hhhcC-CCcEEE
Confidence 3468899999999999999999999999999 66666 567665
No 291
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.27 E-value=7.6e-07 Score=79.07 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++..++|+|+||||||||++.| .+..++..|.|.
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~ 399 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLL--MGYYPLTEGEIR 399 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCceEE
Confidence 3467899999999999999999999999999 888888888774
No 292
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.27 E-value=7.6e-07 Score=78.31 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++..++|+|++|+|||||++.| .|..+++.|.|.
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL--~gl~~~~~G~I~ 390 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLI--PRFYEPDSGQIL 390 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCeEE
Confidence 467899999999999999999999999999 888888888875
No 293
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.26 E-value=8.6e-07 Score=78.79 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=38.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+++|..++|+|+||||||||++.| .+..++..|.|.
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll--~g~~~p~~G~i~ 373 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIR 373 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCEEE
Confidence 3467899999999999999999999999999 788888888775
No 294
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.26 E-value=5.1e-07 Score=73.56 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=38.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
..++++...+++|++++|+||+||||+|+.| ..+..+..|.++
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmi--atlL~P~~G~v~ 60 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMI--ATLLIPDSGKVT 60 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHH--HHhccCCCceEE
Confidence 4578999999999999999999999999999 677788888765
No 295
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.26 E-value=7.7e-07 Score=80.53 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=39.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+++|..++|+|+||||||||++.| .|..++..|.|.
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL--~gl~~p~~G~I~ 511 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL--LGFETPESGSVF 511 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence 3467899999999999999999999999999 888889999875
No 296
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.26 E-value=6.9e-07 Score=80.59 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+.++.+++|+|+||+||||||++| +|+.++..|.|+-
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiL--aGLl~P~sGeI~I 83 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLI--AGVTMPNKGTVDI 83 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCceEEEE
Confidence 467899999999999999999999999999 7888888887753
No 297
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.25 E-value=8.7e-07 Score=77.59 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-++.++.+++|..++|+|++|||||||++.| .+..++..|.|.
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~I~ 380 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLL--LGFVDPTEGSIA 380 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 3467899999999999999999999999999 888888888875
No 298
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.25 E-value=8.7e-07 Score=78.76 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=38.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++..++|+|+||||||||++.| .|+.++..|.|+
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL--~gl~~p~~G~I~ 393 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRIL 393 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence 3567899999999999999999999999999 888888888764
No 299
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.25 E-value=8.9e-07 Score=80.33 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+++|..++|+|+||||||||++.| .|..++..|.|.-
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL--~gl~~p~~G~I~i 538 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLV--AGLYQPWSGEILF 538 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEEE
Confidence 3467899999999999999999999999999 8888888888753
No 300
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.24 E-value=8.6e-07 Score=78.14 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|++|||||||++.| .|..++..|.|+
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL--~gl~~p~~G~I~ 398 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRIL 398 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCEEE
Confidence 467899999999999999999999999999 778888888774
No 301
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.23 E-value=9.6e-07 Score=78.91 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=41.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
-++.++.+.+++|++++|.||+|||||++.| +|+.++..|.|.-+
T Consensus 24 L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiL--sGv~~p~~G~I~~~ 68 (500)
T COG1129 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKIL--SGVYPPDSGEILID 68 (500)
T ss_pred eccceeEEeCceEEEEecCCCCCHHHHHHHH--hCcccCCCceEEEC
Confidence 3468899999999999999999999999999 99999999988765
No 302
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.6e-06 Score=70.00 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEe
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI 124 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i 124 (139)
..+.++....++|.+|+|.||+||||||+|| ++-..+..|.++.+.
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~i--s~rl~p~~G~v~Y~~ 67 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCI--SGRLTPDAGTVTYRM 67 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHH--hcccCCCCCeEEEEc
Confidence 5578999999999999999999999999999 777788889887764
No 303
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.22 E-value=1e-06 Score=77.90 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=38.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++..++|+|++|||||||++.| .|..++..|.|+
T Consensus 339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll--~g~~~~~~G~i~ 381 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLL--TGLYQPQSGEIL 381 (547)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 3467899999999999999999999999999 788888888875
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=98.22 E-value=1e-06 Score=79.55 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=37.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
+.++.+.++++++|+|+||+|||||+++| +++.++..|.|+-+
T Consensus 357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L--~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLL--AGVLKPDEGEVDPE 399 (590)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEEe
Confidence 45677899999999999999999999999 78888888988643
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.22 E-value=1.2e-06 Score=78.11 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++..++|+|++|||||||++.| .+..++..|.|+
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll--~g~~~p~~G~I~ 398 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL--TRAWDPQQGEIL 398 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 3567899999999999999999999999999 888888889875
No 306
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.20 E-value=1.3e-06 Score=77.08 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+++|..++|+|++|||||||++.| .|..++..|.|.-
T Consensus 334 l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~~ 377 (544)
T TIGR01842 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLI--VGIWPPTSGSVRL 377 (544)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 3568899999999999999999999999999 7888888887753
No 307
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.19 E-value=1.3e-06 Score=70.50 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
-.+.++.+++++++-++||||+||||||+.| .+...+..|.|
T Consensus 18 L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi--~~~e~pt~G~i 59 (223)
T COG2884 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI--YGEERPTRGKI 59 (223)
T ss_pred hhCceEeecCceEEEEECCCCCCHHHHHHHH--HhhhcCCCceE
Confidence 4578999999999999999999999999999 44445555544
No 308
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.19 E-value=1.3e-06 Score=77.45 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|+||||||||++.| .+.. +..|.|.
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL--~g~~-p~~G~I~ 407 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNAL--LGFL-PYQGSLK 407 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCC-CCCcEEE
Confidence 467899999999999999999999999999 7777 6678775
No 309
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.18 E-value=1.4e-06 Score=80.47 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++.++.++|+|.||||||||++.| .|+..++.|.|.-
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL--~gly~p~~G~I~~ 532 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLL--LGLYKPQQGRILL 532 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence 467899999999999999999999999999 8999999999853
No 310
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.2e-06 Score=73.67 Aligned_cols=43 Identities=30% Similarity=0.382 Sum_probs=35.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It 121 (139)
-.+.++.+++|.+++|+|++||||||||++| .+... +..|.|+
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L--~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL--NQLNDLIEGTSHEGEIY 145 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence 3567899999999999999999999999999 55543 3467664
No 311
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.18 E-value=1.4e-06 Score=79.56 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=38.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|+||||||||++.| .+..++..|.|.
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~ 539 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALL--QNLYQPTGGQVL 539 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCEEE
Confidence 468899999999999999999999999999 888888888775
No 312
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.18 E-value=1.4e-06 Score=79.03 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=39.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+++|..++|+|+||||||||++.| .++.++..|.|+=
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL--~gl~~p~~G~I~i 533 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLL--VGFFQARSGEILL 533 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHH--hccCCCCCcEEEE
Confidence 3578899999999999999999999999999 8888888888753
No 313
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.18 E-value=1.6e-06 Score=76.97 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++..++|+|++|+|||||++.| .+..++..|.|.-
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll--~g~~~p~~G~i~~ 401 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLF--CGLYIPQEGEILL 401 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence 457899999999999999999999999999 8888888898753
No 314
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.17 E-value=2.4e-06 Score=76.79 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE----EEeeEEEEEeee
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT----QHIGAFVGFLYH 133 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It----q~i~ay~V~~~~ 133 (139)
-.+.++.+.++.-++|+||||+||||||+.| .+...+..|.|. -.||+|.-...+
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l--~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLL--AGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHH--hhhcccCCceEEeCCceEEEEEEehhhh
Confidence 3468899999999999999999999999999 666667788554 568887655433
No 315
>PRK13409 putative ATPase RIL; Provisional
Probab=98.17 E-value=1.6e-06 Score=78.26 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.+ .+.++.+++|+|+||+||||||++| +|+.++..|.|.
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL--~G~l~p~~G~i~ 131 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKIL--SGELIPNLGDYE 131 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHH--hCCccCCCcccc
Confidence 3455 6899999999999999999999999 888888888875
No 316
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.16 E-value=1.5e-06 Score=73.47 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=38.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
-.+.++.+|+|.+++++|+||+||||+|+.| +|+..+..|.+
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmL--TGll~p~~G~v 81 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKML--TGLLLPTSGKV 81 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHH--hCccccCCCeE
Confidence 3578999999999999999999999999999 88888888876
No 317
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.15 E-value=1.7e-06 Score=78.37 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|+||||||||++.| .+..++..|.|.
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL--~gl~~p~~G~I~ 523 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLL--LGLYQPTEGSVL 523 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence 467899999999999999999999999999 888888888775
No 318
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.15 E-value=1.8e-06 Score=77.78 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=40.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-+++++.+.++++++|+|.||||||||.++| .++.++..|.|+-
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i--~gL~~P~~G~i~~ 350 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARIL--AGLLPPSSGSIIF 350 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 4578999999999999999999999999999 8899998888765
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.14 E-value=2e-06 Score=76.87 Aligned_cols=43 Identities=35% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+++|..++|+|+||+|||||++.| .+..++..|.|.
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~ 393 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQIL 393 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHH--ccCCCCCCCEEE
Confidence 3567899999999999999999999999999 788888888775
No 320
>PLN03211 ABC transporter G-25; Provisional
Probab=98.14 E-value=1.6e-06 Score=79.31 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc--cccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e--~G~It 121 (139)
-.+.++.+++|++++|+||||+||||||++| +|..++. .|.|.
T Consensus 84 L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL--aG~~~~~~~sG~I~ 128 (659)
T PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNAL--AGRIQGNNFTGTIL 128 (659)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHH--hCCCCCCceeEEEE
Confidence 4568899999999999999999999999999 5555442 56553
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-06 Score=70.27 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=35.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
...|+.+..+++.+||||||+|||||..+|.+.---....|.|+-
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~ 65 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE
Confidence 468999999999999999999999999999653222344555543
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.14 E-value=2.2e-06 Score=71.38 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=41.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
-+++++.+.++++++++|.||||||||-++| .++..+..|.|+-+
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i--~~L~~pt~G~i~f~ 73 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLI--LGLEEPTSGEILFE 73 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHH--HcCcCCCCceEEEc
Confidence 4578999999999999999999999999999 99999999998754
No 323
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.14 E-value=2.4e-06 Score=73.44 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=38.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++.++|.+|||-||||||||+++| .++..+..|.|.-
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~--NrLiept~G~ilv 87 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLL--NRLIEPTRGEILV 87 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHH--hccCCCCCceEEE
Confidence 46789999999999999999999999999 8888999998764
No 324
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.7e-06 Score=76.84 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
..+.+++++.+..++|+|+||||||||++.| .|+.++..|.|+-
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL--~G~~~~~~G~I~v 380 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLL--LGFLAPTQGEIRV 380 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHH--hCcCCCCCceEEE
Confidence 4578999999999999999999999999999 8888888888753
No 325
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.12 E-value=2.8e-06 Score=69.90 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=37.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
...++.++.+.+++|+|+||+|||||+++| +|-.....|.|.
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~i--aG~l~~t~G~I~ 64 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAI--AGDLKPTSGQIL 64 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHh--hCccccCCceEE
Confidence 457899999999999999999999999999 777778888764
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.12 E-value=2.4e-06 Score=77.80 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++++++|+|+||||||||+++| .+..++..|.|+
T Consensus 468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL--~Gl~~~~~G~i~ 510 (659)
T TIGR00954 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRIL--GELWPVYGGRLT 510 (659)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEe
Confidence 3467899999999999999999999999999 777777778765
No 327
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.10 E-value=2.8e-06 Score=77.10 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+++|..++|+|++|||||||++.| .+..++..|.|+-
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll--~g~~~p~~G~I~i 516 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLV 516 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence 3467899999999999999999999999999 8888888887753
No 328
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.08 E-value=2.9e-06 Score=76.59 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=31.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
-.+.+..+++|++++|||++||||||||++| ++..+
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L--~g~~~ 76 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNAL--AFRSP 76 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCC
Confidence 3578999999999999999999999999999 54443
No 329
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.07 E-value=5.6e-06 Score=74.40 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=41.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG 125 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ 125 (139)
.+.++.+..+.-++++|+||+||||||++| +|...+..|.|+-.-+
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkil--aG~~~~~~G~i~~~~~ 65 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKIL--AGELEPDSGEVTRPKG 65 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHH--cCCCcCCCCeEeecCC
Confidence 467899999999999999999999999999 8888889998876654
No 330
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.07 E-value=3.2e-06 Score=56.16 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+++++.|.|++|+|||||||+|.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999999995
No 331
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.07 E-value=2.3e-06 Score=62.26 Aligned_cols=30 Identities=30% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.++.+.++.+++|+|+||||||||++++.
T Consensus 7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 7 GVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 467888999999999999999999999983
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.06 E-value=3.2e-06 Score=76.75 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=37.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+|+||||||||+++| .+..++..|.++
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~ 66 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNIL--GCLDKPTSGTYR 66 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 467899999999999999999999999999 777778888653
No 333
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.05 E-value=2.9e-06 Score=67.42 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHH
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLL 104 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL 104 (139)
-.+.++.++++++++|+|+||||||||+
T Consensus 11 l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3468999999999999999999999996
No 334
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.05 E-value=4.2e-06 Score=74.10 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++++.++|+||+|||||||++.| .++..+..|.|.
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL--~r~~~~~~G~I~ 387 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLL--LRLYDPTSGEIL 387 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCeEE
Confidence 468899999999999999999999999999 888888888876
No 335
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.03 E-value=3.5e-06 Score=70.37 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.++.+++.+++||||+||||.++.| .++..+..|.|+-
T Consensus 18 v~~isf~v~~G~i~GllG~NGAGKTTtfRmI--Lglle~~~G~I~~ 61 (300)
T COG4152 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMI--LGLLEPTEGEITW 61 (300)
T ss_pred ecceeeeecCCeEEEeecCCCCCccchHHHH--hccCCccCceEEE
Confidence 3468899999999999999999999999999 8899998888764
No 336
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.02 E-value=5.3e-06 Score=74.20 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
.++++.++++++++|+|||||||||||+ .+...+..|+
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr----~~l~~~~sGg 60 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA----ENKRKFSEGY 60 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh----cCCCCCCCCC
Confidence 4678999999999999999999999999 2344455554
No 337
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.01 E-value=5.4e-06 Score=73.93 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=37.3
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.+++++.+.+++|.+++|.||+|||||+++| .|+.++..|.|
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL--~G~~~P~~GeI 61 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKIL--FGLYQPDSGEI 61 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHH--hCcccCCcceE
Confidence 5678999999999999999999999999999 77777776665
No 338
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.01 E-value=2.8e-06 Score=66.49 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.+.++ +++|+||||+|||||+++|.+
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 456777788 999999999999999999953
No 339
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=4.6e-06 Score=70.89 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=35.9
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++..+...|+++.||||+|||||+|+| +|+..++.|.|.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~I--aGL~rPdeG~I~ 56 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMI--AGLTRPDEGRIE 56 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHH--hccCCccccEEE
Confidence 45677888899999999999999999999 788888888774
No 340
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.95 E-value=5.2e-06 Score=84.45 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+.++++++|+||||+|||||+++| +|+.++..|.|+
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiL--aGLl~PtsG~I~ 988 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSIL--TGLLPPTSGTVL 988 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHH--hcCCCCCceEEE
Confidence 457888999999999999999999999999 888888888774
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.95 E-value=5.4e-06 Score=81.66 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+++|.+++|+|+||||||||++.| .++..+..|.|+-
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~i 444 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLI--ERLYDPTEGDIII 444 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHH--HHhccCCCCeEEE
Confidence 467899999999999999999999999999 7788888888764
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=97.94 E-value=8.5e-06 Score=75.32 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.+.++.+.++..++|+|+|||||||||++|.+
T Consensus 193 l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 346789999999999999999999999999954
No 343
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=7.5e-06 Score=66.32 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=36.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+++....+.|+.|+|-||+||||||+|| .-+..+..|.|.-
T Consensus 24 GvSL~A~~GdVisIIGsSGSGKSTfLRCi--N~LE~P~~G~I~v 65 (256)
T COG4598 24 GVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSAGSIRV 65 (256)
T ss_pred ceeeecCCCCEEEEecCCCCchhHHHHHH--HhhcCCCCceEEE
Confidence 57889999999999999999999999999 6666677777643
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=97.93 E-value=7.4e-06 Score=80.83 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=35.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It 121 (139)
-.+.++.++++++++|+||+||||||||++| ++...+. .|.|+
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~L--aG~l~~~~~~~G~I~ 226 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGEIT 226 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHH--hCCCCCCCcceeEEE
Confidence 3467899999999999999999999999999 6655554 66664
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.92 E-value=6.8e-06 Score=80.59 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=34.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It 121 (139)
.+.++.++.+.+++|||+||+||||||++| ++... ...|.|+
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~L--ag~~~~g~~~~G~I~ 824 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVL--AERVTTGVITGGDRL 824 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHH--hCCCCCCCcceeEEE
Confidence 467889999999999999999999999999 55544 3456654
No 346
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=1.2e-05 Score=64.62 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=34.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.++++.+.+++-++|+|+||+||||||-.+ .++..+..|.+
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vl--AGLd~~ssGeV 67 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVL--AGLDDPSSGEV 67 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHH--hcCCCCCCceE
Confidence 357899999999999999999999999999 55555565544
No 347
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.91 E-value=8.7e-06 Score=80.23 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+++|.+++|+||+||||||||++| .|..++..|.|.-
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l--~G~~~~~~G~i~~ 485 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMI--MGELEPSEGKIKH 485 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 467899999999999999999999999999 8888888887753
No 348
>KOG0061|consensus
Probab=97.90 E-value=9.2e-06 Score=73.85 Aligned_cols=33 Identities=36% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.+++.....+++.+||||+|+|||||||+|.+
T Consensus 46 L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lag 78 (613)
T KOG0061|consen 46 LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAG 78 (613)
T ss_pred eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhc
Confidence 456889999999999999999999999999965
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.90 E-value=9.6e-06 Score=62.45 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=29.3
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
.+.+.++.+++|+|++|+|||||+++| .+..++..|-
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL--~~~i~~~~~~ 55 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNAL--LAFIPPDERI 55 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHH--HhhcCCCCCE
Confidence 356778999999999999999999999 5555544443
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.89 E-value=4.1e-06 Score=68.20 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+..++.-+|+||||+|||||+|.| ++-.++..|...
T Consensus 22 n~ls~~v~~Gelr~lIGpNGAGKTT~mD~I--tGKtrp~~G~v~ 63 (249)
T COG4674 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVI--TGKTRPQEGEVL 63 (249)
T ss_pred eeeEEEecCCeEEEEECCCCCCceeeeeee--cccCCCCcceEE
Confidence 467899999999999999999999999999 888888877654
No 351
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.86 E-value=1e-05 Score=82.47 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|++++++|+||+|||||+++| +|...+..|.|.
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL--~Gll~ptsG~I~ 1997 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKML--TGDTTVTSGDAT 1997 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHH--hCCCCCCccEEE
Confidence 467889999999999999999999999999 888888888775
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.86 E-value=1.1e-05 Score=79.54 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+++|..++|+|++||||||||++| .|..++..|.|.-
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l--~g~~~~~~G~i~~ 697 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEGHVHM 697 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCccCCcEEEE
Confidence 467899999999999999999999999999 7788888887753
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.84 E-value=1.2e-05 Score=63.13 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+..+++++|+||||+|||||++.|.+
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 4555579999999999999999999964
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.7e-05 Score=65.69 Aligned_cols=33 Identities=33% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.+.+..+..++-..|+|+||+||||||+.+.+
T Consensus 47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred ccccceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999999999999999999954
No 355
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.6e-05 Score=70.48 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=39.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+|+.+.||++|-++|-||||||||+..| +|+-++..|+|.-
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LL--tGL~~PqsG~I~l 382 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLL--TGLYQPQSGEILL 382 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHH--hcccCCCCCceeE
Confidence 36889999999999999999999999999 9999999999864
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=97.81 E-value=1.6e-05 Score=78.33 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|++|||||||++.| .|..++..|++.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lL--lG~~~~~~G~i~ 675 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGELSHAETSSV 675 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCcccCCCEE
Confidence 467899999999999999999999999999 778888888764
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.80 E-value=1.5e-05 Score=78.30 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=35.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcC--CcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTS--VVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~--v~~~e~G~It 121 (139)
-.+.++.++.|++++|+|+||+||||||++|.+.. ...+..|.|+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~ 123 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT 123 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE
Confidence 34688999999999999999999999999995421 1234566664
No 358
>PTZ00243 ABC transporter; Provisional
Probab=97.79 E-value=1.7e-05 Score=78.63 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=37.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|.+++|+|+|||||||||++| .+..++..|.|.
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i--~G~~~~~~G~i~ 718 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSL--LSQFEISEGRVW 718 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence 367889999999999999999999999999 777778888764
No 359
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.78 E-value=1.4e-05 Score=63.03 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+++|+||||+|||||+++|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999999995
No 360
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.78 E-value=1.6e-05 Score=62.02 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.6
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+++|+|++|||||||+++|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 47789999999999999999999954
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=97.77 E-value=2.3e-05 Score=77.33 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=38.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++++.++|+|++|||||||++.| .++.++..|.|.
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL--~rl~~p~~G~I~ 1294 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIVELEKGRIM 1294 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCceEE
Confidence 567899999999999999999999999999 888899999885
No 362
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.5e-05 Score=70.61 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=37.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+.+|+-++|+|++|||||||+..| .+-..+..|.|+-
T Consensus 354 L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl--~~~~~~~~G~i~~ 397 (573)
T COG4987 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLL--AGAWDPQQGSITL 397 (573)
T ss_pred hhccceeecCCCeEEEECCCCCCHHHHHHHH--HhccCCCCCeeeE
Confidence 3567899999999999999999999999999 6666777777754
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=97.75 E-value=2.1e-05 Score=77.65 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.++++.+++|||+||+||||||++|.+
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG 928 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcC
Confidence 46788999999999999999999999999954
No 364
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.75 E-value=1.5e-05 Score=63.80 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+++|+|+||||||||+++|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999963
No 365
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.72 E-value=2.3e-05 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.0
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|+||+|+|||||++.|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999999965
No 366
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.72 E-value=2.2e-05 Score=59.87 Aligned_cols=24 Identities=50% Similarity=0.708 Sum_probs=21.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++++++||+|||||||+++|..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~ 25 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLG 25 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhh
Confidence 457899999999999999999985
No 367
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.72 E-value=2.3e-05 Score=61.47 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+++++|+|+||+||||||++|.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHhe
Confidence 37899999999999999999995
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=97.69 E-value=2.5e-05 Score=77.67 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc-ccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF-GGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~-G~It 121 (139)
.+.++.+++|..++|+|++|||||||+++| .|..++.. |.|.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lL--lG~~~~~~GG~I~ 676 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAM--LGELPPRSDASVV 676 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHH--HHhhccCCCceEE
Confidence 468899999999999999999999999999 77777777 6654
No 369
>PTZ00243 ABC transporter; Provisional
Probab=97.69 E-value=3.5e-05 Score=76.46 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++++.++|+|++|+|||||++.| .++..+..|.|.
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lL--lrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTF--MRMVEVCGGEIR 1368 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 467899999999999999999999999999 888899999886
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=97.68 E-value=3.5e-05 Score=76.72 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=38.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++.++.++|+|++|||||||++.| .++.++..|.|.
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL--~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIVELERGRIL 1297 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCcCCCCCceEE
Confidence 467899999999999999999999999999 888899999885
No 371
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.67 E-value=3e-05 Score=60.19 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCccccCC-CEEEEEeecCCchhHHHHHHH
Q psy4669 79 DPSVLMKRP-PVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 79 ~~~~~~~r~-pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.++.+..+ +++.|+||||+||||||+.|.
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 467788887 699999999999999999986
No 372
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.67 E-value=9.9e-05 Score=51.42 Aligned_cols=43 Identities=26% Similarity=0.255 Sum_probs=30.8
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
-++++|+.|+|||||++.+.+........-.++.++..+++..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 45 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE 45 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE
Confidence 5789999999999999999776533333346666666655444
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.67 E-value=2.7e-05 Score=61.61 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=20.2
Q ss_pred CEEEEEeecCCchhHHHHHHH
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~ 108 (139)
++++|+||||+|||||+++|.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 899999999999999999986
No 374
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.65 E-value=5.8e-06 Score=67.41 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=38.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.+.++++|+++||||+||||.+..+ .|+.++..|.|.-
T Consensus 22 ~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi--~Glv~~d~G~i~l 63 (243)
T COG1137 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMI--VGLVRPDSGKILL 63 (243)
T ss_pred eeeEEEcCCcEEEEECCCCCCceeEEEEE--EEEEecCCceEEE
Confidence 57899999999999999999999999999 9999999998754
No 375
>KOG0058|consensus
Probab=97.65 E-value=3.9e-05 Score=71.02 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
++.+++++.|++|+++||||+||||+...| .++-.+..|.|.-
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL--~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLL--LRFYDPTSGRILL 527 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHH--HHhcCCCCCeEEE
Confidence 468999999999999999999999999999 8888888888764
No 376
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.64 E-value=3.5e-05 Score=59.84 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..+.++.+++++|+||+||||||++|+.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 345666789999999999999999999973
No 377
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.63 E-value=4.8e-05 Score=75.23 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+++|+.++|+|++|+|||||++.| .++.++..|.|.=
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL--~rl~~~~~G~I~I 1345 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGL--FRINESAEGEIII 1345 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCccCCCCeEEE
Confidence 467899999999999999999999999999 8888888898753
No 378
>KOG0060|consensus
Probab=97.63 E-value=4.8e-05 Score=69.44 Aligned_cols=43 Identities=28% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
+.++.++++..+.|+||+|||||+||+.| .++-+...|.++-+
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvl--ggLWp~~~G~l~k~ 495 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVL--GGLWPSTGGKLTKP 495 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHH--hcccccCCCeEEec
Confidence 47889999999999999999999999999 66666566666544
No 379
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.63 E-value=5e-05 Score=59.00 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.0
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++||+|||||||+++|.+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~ 22 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSG 22 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999944
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.61 E-value=4e-05 Score=60.17 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=21.7
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+..+ +++|+||||+||||||++|.
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 334444 99999999999999999984
No 381
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.61 E-value=4.6e-05 Score=68.72 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+..+..++|+||||+|||||.+.| .++.++..|.+.
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~l--vG~w~p~~G~VR 394 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLL--VGIWPPTSGSVR 394 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHH--HcccccCCCcEE
Confidence 357899999999999999999999999999 777777777654
No 382
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=5.7e-05 Score=64.27 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=34.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
-+++++.+.++++++|+|.|||||||+..+| .++.+...+.
T Consensus 21 v~~vs~~i~~GE~lgiVGESGsGKS~~~~ai--m~llp~~~~~ 61 (316)
T COG0444 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAI--MGLLPKPNAR 61 (316)
T ss_pred EeceeEEEcCCcEEEEEcCCCCCHHHHHHHH--HhccCCCCCe
Confidence 4578999999999999999999999999999 6666643333
No 383
>KOG0057|consensus
Probab=97.60 E-value=4e-05 Score=69.44 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=35.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
...++.+++|+-|+|+|.|||||||+|+.| .++.. ..|.|.
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~L--lrF~d-~sG~I~ 409 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLL--LRFFD-YSGSIL 409 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHH--HHHhc-cCCcEE
Confidence 467999999999999999999999999999 66665 677664
No 384
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.59 E-value=9e-05 Score=52.85 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=22.1
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
++++|++|+|||||++.|.+.+......+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~ 30 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSK 30 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence 68999999999999999964344443333
No 385
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.58 E-value=6.7e-05 Score=61.05 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=39.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.+++...++...+|+|.+|+|||||.+.| .|.+++..|.|.-
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMl--aGmi~PTsG~il~ 72 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKML--AGMIEPTSGEILI 72 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHH--hcccCCCCceEEE
Confidence 357899999999999999999999999999 8999999998753
No 386
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.57 E-value=5.6e-05 Score=62.23 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
.+.+..+|.+.+++|+|.||||||||++.+
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 467889999999999999999999999865
No 387
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.56 E-value=0.00022 Score=51.60 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=30.1
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
++++|+.++|||||++.+.+..+.....-.++.++....+.+
T Consensus 3 i~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~ 44 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL 44 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE
Confidence 789999999999999999776655544555555554444433
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.56 E-value=6.8e-05 Score=58.13 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 44 IDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 44 ~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...-+++|+++-.++..... ..+. . ...-++++++++|+||.|||||+|.|..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~-----g~~~-------l-~~~l~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGE-----GIEE-------L-KELLKGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTT-----THHH-------H-HHHHTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred HHHHHHcCCcEEEEeCCCCc-----CHHH-------H-HHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 45678899998777632111 1111 1 1223459999999999999999999965
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.55 E-value=7.8e-05 Score=68.15 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=36.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.+++|.-+-|.|+||||||||+++| .|+=+-..|.|.-
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRai--aGLWP~g~G~I~~ 452 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRAL--AGLWPWGSGRISM 452 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHH--hccCccCCCceec
Confidence 457889999999999999999999999999 7777777776643
No 390
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.55 E-value=0.00015 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+.-+.++|+|++|+|||||+++|.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 445799999999999999999996543
No 391
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.55 E-value=6.7e-05 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+++|+|++|||||||++.|.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5788999999999999999999965
No 392
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=6.8e-05 Score=60.33 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=36.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE-EEee
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT-QHIG 125 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It-q~i~ 125 (139)
.+.++.+..++-+++-||||+||||||++| .+--.++.|.|. +|.|
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~L--YaNY~~d~G~I~v~H~g 74 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSL--YANYLPDEGQILVRHEG 74 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHH--HhccCCCCceEEEEeCc
Confidence 357899999999999999999999999999 555556667553 4444
No 393
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.54 E-value=6.3e-05 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+++++|.|++|+||||++++|+
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999997
No 394
>KOG0055|consensus
Probab=97.54 E-value=6.3e-05 Score=73.11 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=38.4
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++.+..++++|||||||||++..| .++-.+..|.|.=
T Consensus 371 g~sl~i~~G~~valVG~SGsGKST~i~LL--~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 371 GVSLKIPSGQTVALVGPSGSGKSTLIQLL--ARFYDPTSGEVLI 412 (1228)
T ss_pred CeEEEeCCCCEEEEECCCCCCHHHHHHHH--HHhcCCCCceEEE
Confidence 47899999999999999999999999999 8888899998764
No 395
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.54 E-value=0.00012 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++.+++|+||+|||||||++.|+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 345788999999999999999999975
No 396
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.53 E-value=5e-05 Score=60.89 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++|+|+||+||||||++|..
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~ 44 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISF 44 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999964
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.53 E-value=6.5e-05 Score=58.33 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|++|||||||.+.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999965
No 398
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.53 E-value=6.6e-05 Score=74.17 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
.+.++.++++..++|+|++|||||||++.| .++..+
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL--~r~ydp 1220 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLL--MRFYDL 1220 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHH--HHhCCC
Confidence 467899999999999999999999999999 555555
No 399
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.53 E-value=7.2e-05 Score=57.69 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.++|++|||||||+++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999965
No 400
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.52 E-value=7e-05 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+|++|+|||||+++|..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999955
No 401
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.52 E-value=5e-05 Score=60.22 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=25.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
.++.+++|.|++|+|||||.+.| .+......|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L--~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFL--EALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH--HHHhhhccCC
Confidence 56789999999999999999999 4444444443
No 402
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.52 E-value=9.2e-05 Score=66.91 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc----cccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE----FGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e----~G~Itq 122 (139)
-.+.|+.+.++++++|+|.|||||||+..+| .++.+.. .|.|.-
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i--~gll~~~~~~~~G~I~~ 72 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALAL--MGLLPEGGRITSGEVIL 72 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHH--hccCCCCCcccceEEEE
Confidence 3578999999999999999999999999999 5555555 466543
No 403
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.52 E-value=0.00021 Score=53.91 Aligned_cols=46 Identities=28% Similarity=0.420 Sum_probs=33.6
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcC-Ccc-cccccEEEEeeEEEE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK-SEFGGITQHIGAFVG 129 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~-~e~G~Itq~i~ay~V 129 (139)
..+.+.++|+|++|+|||||++.|.+.. +.. ...-+.|+++..|.+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~ 62 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV 62 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe
Confidence 3677889999999999999999997653 222 223346777777654
No 404
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.52 E-value=0.00012 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEEeecCCchhHHHHHHHhcC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~ 111 (139)
++++|+.|+|||||+++|.+..
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999996543
No 405
>KOG0065|consensus
Probab=97.50 E-value=7.9e-05 Score=72.93 Aligned_cols=42 Identities=33% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
.+++..+..|-.+++||.||+|||||||+|++. ...|-|+-+
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R----~t~G~I~Gd 849 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGR----KTGGYIEGD 849 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcC----cccceEEeE
Confidence 456778999999999999999999999999762 244555544
No 406
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.50 E-value=0.00027 Score=51.00 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.6
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
++++|+.|+|||||++.+.+..+.....-.++
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~ 34 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG 34 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCcee
Confidence 78999999999999999976554433333333
No 407
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.49 E-value=0.00014 Score=51.04 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=24.6
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcc-cccccEEEEe
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI 124 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq~i 124 (139)
++++|+.|+|||||+++|.+.+... ...-+.|++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~ 37 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP 37 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeee
Confidence 6899999999999999997643322 2222445555
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.49 E-value=8.4e-05 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.1
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++++||+|+|||||++.|.+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999999965
No 409
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.45 E-value=0.00018 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.0
Q ss_pred EEEEeecCCchhHHHHHHHhc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~ 110 (139)
++++|++|+|||||+++|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999654
No 410
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.44 E-value=0.0001 Score=72.79 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=35.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|..++|+|++|||||||+++| .++.+ ..|.|.
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL--~rl~~-~~G~I~ 1276 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSAL--LRLLS-TEGEIQ 1276 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHH--hhhcC-CCcEEE
Confidence 467899999999999999999999999999 66665 568774
No 411
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.43 E-value=0.00028 Score=50.81 Aligned_cols=43 Identities=37% Similarity=0.511 Sum_probs=28.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcC--Ccccc-cccEEEEeeEEEEEe
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTS--VVKSE-FGGITQHIGAFVGFL 131 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~--v~~~e-~G~Itq~i~ay~V~~ 131 (139)
+++++|+.++|||||+++|.+.. ....+ ..++|..++.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~ 47 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL 47 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe
Confidence 78999999999999999995421 11111 234566666555544
No 412
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.43 E-value=8.5e-05 Score=65.72 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=31.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEEEEeeEE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGITQHIGAF 127 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~Itq~i~ay 127 (139)
..+..-+++++||+|||||||+++|.+..... .-.-|||.++|.-
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa 77 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYA 77 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhcccc
Confidence 34556679999999999999999996533221 2234778777753
No 413
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.42 E-value=0.0002 Score=64.85 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=33.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC---cccccccEEEEeeEEEEEeee
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAFVGFLYH 133 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v---~~~e~G~Itq~i~ay~V~~~~ 133 (139)
+++++||+|||||||+++|.+... ......++|.+++.+.+.+.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~ 49 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD 49 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC
Confidence 689999999999999999964221 112246899999987766644
No 414
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.40 E-value=0.00049 Score=49.99 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=26.4
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG 129 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V 129 (139)
++++|+.|+|||||++.+.+..........++..+..+.+
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~ 42 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKII 42 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE
Confidence 6899999999999999997655444333333333333333
No 415
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.39 E-value=0.00058 Score=49.87 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.-..++++|+.|+|||||++.+.+..+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~ 32 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF 32 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346799999999999999999964333
No 416
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.39 E-value=0.00037 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEeecCCchhHHHHHHHhcCC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v 112 (139)
++++|+.|+|||||++++.+...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~~ 25 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKF 25 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999976543
No 417
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.38 E-value=0.00016 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+.+.||.|+||||++..|..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHh
Confidence 367899999999999999999954
No 418
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.36 E-value=0.00056 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++++|+.|+|||||++++.+....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC
Confidence 689999999999999999765443
No 419
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.36 E-value=0.00042 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.7
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..++++|++|+|||||++++.+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc
Confidence 468999999999999999996543
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.35 E-value=0.00013 Score=57.02 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.|+++|+|++|||||||+..|..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 4678999999999999999998853
No 421
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.35 E-value=0.00041 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.8
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
|.++++|+.|+|||||++++.+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 6789999999999999999976443
No 422
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.34 E-value=0.00017 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.2
Q ss_pred CCEEEEEeecCCchhHHHHHHHhc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
..-++++|++|+|||||+++|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 566999999999999999999653
No 423
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.34 E-value=0.0002 Score=60.38 Aligned_cols=36 Identities=36% Similarity=0.600 Sum_probs=28.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh------cCCcccccccE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN------TSVVKSEFGGI 120 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~------~~v~~~e~G~I 120 (139)
++.||+.|.|..|+||||||+.|.. ..++.+|+|.+
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v 43 (318)
T PRK11537 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV 43 (318)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCc
Confidence 3679999999999999999999864 24556777743
No 424
>KOG0062|consensus
Probab=97.34 E-value=0.00013 Score=66.01 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=28.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++...+|+-+++.|+||+||||||++|+.
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4567899999999999999999999999966
No 425
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.34 E-value=0.00014 Score=58.36 Aligned_cols=22 Identities=55% Similarity=0.773 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++|+||+|||||||+++|..
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~ 22 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLA 22 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 426
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.0001 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.|+++|+|++||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999996
No 427
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.33 E-value=0.00046 Score=51.83 Aligned_cols=44 Identities=30% Similarity=0.482 Sum_probs=30.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC-Ccc-cccccEEEEeeEEE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK-SEFGGITQHIGAFV 128 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~-~e~G~Itq~i~ay~ 128 (139)
...+-++++|++|+|||||+++|.+.. +.. ...-+.|+++..|.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~ 67 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE 67 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe
Confidence 366779999999999999999997632 211 11223566666655
No 428
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.00013 Score=56.01 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++|.|++|||||||.++|.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 429
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.31 E-value=0.00027 Score=49.18 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=26.2
Q ss_pred EEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEE
Q psy4669 92 IMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGF 130 (139)
Q Consensus 92 ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~ 130 (139)
|+|+.|+|||||++.|.+.... .....+.+.....+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 40 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE 40 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEE
Confidence 5899999999999999664443 33344455555544443
No 430
>KOG0054|consensus
Probab=97.31 E-value=0.00021 Score=70.40 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
-.+.++.+++|..++|+|++||||||||.+| .|=.+...|.+.-
T Consensus 537 L~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai--LGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAI--LGEMPKLSGSVAV 580 (1381)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHH--hcCcccccceEEE
Confidence 4578899999999999999999999999999 6666666675544
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00023 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.|.|++|+||||+.+.|+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 432
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.29 E-value=0.00021 Score=52.65 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=25.6
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
|+++|..++|||||+|+|.+..+.+...+..|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T 32 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCT 32 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTT
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccc
Confidence 68999999999999999998777776655433
No 433
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.29 E-value=0.00037 Score=63.61 Aligned_cols=43 Identities=33% Similarity=0.481 Sum_probs=31.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcc--c-ccccEEEEeeEEEEEe
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVK--S-EFGGITQHIGAFVGFL 131 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~--~-e~G~Itq~i~ay~V~~ 131 (139)
|++++||+|||||||+++|.+.+... . ...+||..+|...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~ 47 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ 47 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec
Confidence 78999999999999999996532221 1 2358999988665543
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.00016 Score=57.16 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.++....++++.|+||||+|||||++.+.+
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677888889999999999999999999863
No 435
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.28 E-value=0.0002 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
...++++|+.|+|||||++.+.+..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 46799999999999999999976543
No 436
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.28 E-value=0.00014 Score=60.85 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++-+++|.|++|||||||.+.|.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999843
No 437
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.27 E-value=0.00025 Score=57.88 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
..|.++++|++|+||||+|++|.+..+.+...|.+|
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 446899999999999999999966555677777776
No 438
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.27 E-value=0.00027 Score=53.80 Aligned_cols=43 Identities=35% Similarity=0.501 Sum_probs=29.4
Q ss_pred EEEEeecCCchhHHHHHHHhc---C-C---cccccccEEEEeeEEEEEee
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNT---S-V---VKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~---~-v---~~~e~G~Itq~i~ay~V~~~ 132 (139)
++++||+|+|||||++++... . + ......++|.+++.+.+.+.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~ 52 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVD 52 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEec
Confidence 789999999999999999541 0 1 11113357777776666554
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.27 E-value=0.00022 Score=59.41 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.5
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
.+..+..+.|.|++|+|||||+++| .+..+...+
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al--~~~~~~~~~ 173 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSL--VDEIPKDER 173 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHH--HccCCcccc
Confidence 4567899999999999999999999 555555444
No 440
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.25 E-value=0.00031 Score=58.63 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCcc-ccCC-CCCccc-CCCC
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSV-ADDS-NGKDVE-RRPP 77 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~-~~~~-~~~d~~-~~~~ 77 (139)
||..+||+++|++..-|-++. .|. .++ + .+.+..||..||+.+.+.-..... .... ...+.. .-++
T Consensus 42 ltq~~lA~~~gvs~~~i~~~E--~g~---~~p-----s-~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 110 (309)
T PRK08154 42 MSRKVLAQASGVSERYLAQLE--SGQ---GNV-----S-ILLLRRVARALGCSLADLLGDVDTSSPDWLLIRELLEQASP 110 (309)
T ss_pred CCHHHHHHHHCcCHHHHHHHH--CCC---CCC-----C-HHHHHHHHHHhCCCHHHHhCCCCCCChHHHHHHHHHhcCCH
Confidence 688999999999999887766 331 122 2 237889999999986654422110 0000 000000 0000
Q ss_pred -------------CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 -------------ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 -------------~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.......++..+.++|++||||||+-+.|+.
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 111 AQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 01245678889999999999999999999863
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.24 E-value=0.0003 Score=58.30 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=27.6
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
..++|+|++|||||||+++| ++...+..|.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--~~~~~~~~G~i~ 143 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--ARILSTGISQLG 143 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--hCccCCCCceEE
Confidence 68999999999999999999 777777777653
No 442
>PRK04213 GTP-binding protein; Provisional
Probab=97.23 E-value=0.00066 Score=51.64 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG 125 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ 125 (139)
+.+.++++|+.|+|||||+++|.+........-+.|.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~ 47 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN 47 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce
Confidence 4567999999999999999999764433222234555443
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.23 E-value=7.4e-05 Score=55.13 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=0.0
Q ss_pred EEEEEeecCCchhHHHHHHH
Q psy4669 89 VVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~ 108 (139)
+++|+|+|||||||+|++|.
T Consensus 1 i~viiG~N~sGKS~il~ai~ 20 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIY 20 (303)
T ss_dssp --------------------
T ss_pred CCcccccccccccccccccc
Confidence 57899999999999999994
No 444
>KOG0056|consensus
Probab=97.22 E-value=0.00024 Score=64.67 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=36.4
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++.|..++++||||+||||+++.| .++.....|.|+
T Consensus 554 l~disF~v~pGktvAlVG~SGaGKSTimRlL--fRffdv~sGsI~ 596 (790)
T KOG0056|consen 554 LSDISFTVQPGKTVALVGPSGAGKSTIMRLL--FRFFDVNSGSIT 596 (790)
T ss_pred eecceEEecCCcEEEEECCCCCchhHHHHHH--HHHhhccCceEE
Confidence 4578999999999999999999999999999 555666666665
No 445
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.21 E-value=0.0011 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++++|+.|+|||||++.+......
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~~ 26 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGYE 26 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC
Confidence 689999999999999998654443
No 446
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.19 E-value=0.0003 Score=58.14 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++++|++|+|||||++.|.+
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999954
No 447
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.19 E-value=0.00021 Score=58.96 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=18.6
Q ss_pred EEEEEeecCCchhHHHHHHH
Q psy4669 89 VVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~ 108 (139)
+++|+|++|||||||+++|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~ 20 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLT 20 (273)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999994
No 448
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.17 E-value=0.0004 Score=56.23 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+..+..++++-++|||||||||||-.+++
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAG 47 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG 47 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhC
Confidence 3577889999999999999999999999944
No 449
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.16 E-value=0.0014 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++++|+.|+|||||++++.+....
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~~ 26 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFD 26 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC
Confidence 789999999999999999764433
No 450
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.16 E-value=0.001 Score=47.67 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.2
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
++++|+.|+|||||++.+....+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~~~~~ 27 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNE 27 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC
Confidence 6899999999999999997655443
No 451
>PRK00098 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00041 Score=57.57 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.7
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++++|++|+|||||+++|.+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999954
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.15 E-value=0.00045 Score=52.71 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=26.0
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG 129 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V 129 (139)
-+.++|++|||||||+++|.+... .=.-||.+..|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~----~~~KTq~i~~~~~ 39 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI----RYKKTQAIEYYDN 39 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC----CcCccceeEeccc
Confidence 467999999999999999965322 1234666665543
No 453
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.00031 Score=60.86 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=26.6
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..+.++.+++++||+|+||||++..|..
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999999999964
No 454
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.14 E-value=0.00025 Score=56.57 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++|.|++|||||||.+.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 455
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.14 E-value=0.0004 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+.+++|.||||+|||+|+++|.
T Consensus 23 ~~~~~~i~G~NGsGKS~ileAi~ 45 (220)
T PF02463_consen 23 SPGLNVIVGPNGSGKSNILEAIE 45 (220)
T ss_dssp TSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHH
Confidence 35699999999999999999995
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.13 E-value=0.0003 Score=52.07 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++|+||+|+|||||++.|.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999975
No 457
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.12 E-value=0.0003 Score=54.81 Aligned_cols=22 Identities=55% Similarity=0.809 Sum_probs=19.5
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++|+||+|||||||+++|..
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~ 22 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIE 22 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 458
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.10 E-value=0.00044 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHH
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~ 108 (139)
++.+|.|+||+|||++|++|.
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~ 43 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAIC 43 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999985
No 459
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.09 E-value=0.00042 Score=53.55 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++|++|+|||||+++|.+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRG 23 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999965
No 460
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.08 E-value=0.00056 Score=56.09 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++|+||+|||||||+++|..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999963
No 461
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.08 E-value=0.00053 Score=51.75 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.2
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
|++.++|++|+|||||++.+.+
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~ 22 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILT 22 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHh
Confidence 7899999999999999998864
No 462
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.06 E-value=0.00044 Score=54.09 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHH
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+++|+|+||+||||||++|.
T Consensus 22 gl~~i~G~NGsGKStll~ai~ 42 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALT 42 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 488999999999999999996
No 463
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.06 E-value=0.00046 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+.|+|+.|+|||||++.|.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 689999999999999999864433
No 464
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.06 E-value=0.00039 Score=54.25 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.0
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
....|+++++|+.|+|||||++.+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999999854
No 465
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.05 E-value=0.00048 Score=52.69 Aligned_cols=31 Identities=45% Similarity=0.808 Sum_probs=24.2
Q ss_pred CEEEEEeecCCchhHHHHHHHh-------cCCcccccc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN-------TSVVKSEFG 118 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~-------~~v~~~e~G 118 (139)
||+.|.|..|+|||||++.+.+ ..++..|+|
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFG 38 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEcccc
Confidence 8999999999999999999872 234556666
No 466
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.05 E-value=0.0013 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
-++++|+.|+|||||++.+.+..+
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~ 29 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRF 29 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999976443
No 467
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.05 E-value=0.00023 Score=59.63 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=16.9
Q ss_pred EEeecCCchhHHHHHHHh
Q psy4669 92 IMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 92 ImG~~g~GKTTLL~~L~~ 109 (139)
|+|+|||||||||++|.+
T Consensus 1 l~G~nGsGKSTLl~~iaG 18 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG 18 (325)
T ss_pred CcCCCCCCHHHHHHHHHC
Confidence 589999999999999987
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.00053 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|.|++|+|||||.+.|..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999964
No 469
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.04 E-value=0.00044 Score=50.42 Aligned_cols=20 Identities=45% Similarity=0.713 Sum_probs=18.1
Q ss_pred EEEEeecCCchhHHHHHHHh
Q psy4669 90 VTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+.|+|||||++.|.+
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 68999999999999999954
No 470
>KOG0927|consensus
Probab=97.04 E-value=0.0004 Score=63.18 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=37.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG 125 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ 125 (139)
+.++-+....-++++||||+||||||+.+ ++...+..|.+.-|.+
T Consensus 408 ~l~fgid~~srvAlVGPNG~GKsTLlKl~--~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 408 KLNFGIDLDSRVALVGPNGAGKSTLLKLI--TGDLQPTIGMVSRHSH 452 (614)
T ss_pred hhhcccCcccceeEecCCCCchhhhHHHH--hhcccccccccccccc
Confidence 35677888899999999999999999999 8888888887665544
No 471
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.04 E-value=0.00037 Score=64.98 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.1
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+++|+||||+||||||++|.
T Consensus 23 ~~~~~i~G~NGsGKS~ll~ai~ 44 (1179)
T TIGR02168 23 KGITGIVGPNGCGKSNIVDAIR 44 (1179)
T ss_pred CCcEEEECCCCCChhHHHHHHH
Confidence 6699999999999999998864
No 472
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.04 E-value=0.0015 Score=47.29 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++++|+.|+|||||++++.+..+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~ 27 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEFS 27 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC
Confidence 689999999999999999765443
No 473
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.03 E-value=0.00053 Score=51.32 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=19.2
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
|++.|+|+.++|||||++.|..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999988853
No 474
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.03 E-value=0.00048 Score=45.33 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|++|+||||+.+.|..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 475
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.02 E-value=0.00094 Score=51.29 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=30.2
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcccc--cccEEEEeeEEEEEe
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGITQHIGAFVGFL 131 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e--~G~Itq~i~ay~V~~ 131 (139)
-++++|++|+|||||+|.|.+....... ..+.|++...+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~ 46 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW 46 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE
Confidence 4789999999999999999765544333 235666655554433
No 476
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.01 E-value=0.0014 Score=49.22 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+...++++|++|+|||||++++.+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345569999999999999999965
No 477
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.01 E-value=0.002 Score=47.39 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.8
Q ss_pred EEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
++++|+.|+|||||++.+.+..........+
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~ 33 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 33 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCce
Confidence 6899999999999999997655544444443
No 478
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.00 E-value=0.0022 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEeecCCchhHHHHHHHhcCCc
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++++|+.|+|||||++.+.+....
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~~~ 26 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIFT 26 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 789999999999999999654443
No 479
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.97 E-value=0.00044 Score=58.54 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.-++.+++++|+||-|||||+|+|.
T Consensus 161 ~l~~~~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 161 LLAGKITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred HhcCCeEEEECCCCCcHHHHHHhhC
Confidence 3456699999999999999999995
No 480
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.97 E-value=0.00043 Score=54.97 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.... ++++|+||||+||||||+.+..
T Consensus 24 ~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 24 TELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 3343333 8999999999999999999853
No 481
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.97 E-value=0.0019 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEeecCCchhHHHHHHHhcCC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+.++|+.|+|||||++.+.+...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 67999999999999999976554
No 482
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.97 E-value=0.00047 Score=54.22 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.8
Q ss_pred EEEEeecCCchhHHHHHHH
Q psy4669 90 VTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~ 108 (139)
++++||+|||||||+++|.
T Consensus 2 v~i~Gh~~~GKttL~~~ll 20 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLL 20 (219)
T ss_pred EEEecCCCCChHHHHHHHH
Confidence 7899999999999999885
No 483
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.97 E-value=0.00044 Score=55.25 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+.++....++++.|+|||++||||||+.+.
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 34566777789999999999999999999965
No 484
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0012 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+|.++++.||||.|||||+++|+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~ 26 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLE 26 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 788999999999999999999975
No 485
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.96 E-value=0.00079 Score=49.12 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.5
Q ss_pred EEeecCCchhHHHHHHHhcC
Q psy4669 92 IMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 92 ImG~~g~GKTTLL~~L~~~~ 111 (139)
++|++|+|||||+++|.+..
T Consensus 1 iiG~~~~GKStll~~l~~~~ 20 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK 20 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC
Confidence 58999999999999996654
No 486
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.96 E-value=0.00073 Score=48.45 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 92 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 92 ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
++|++|+|||||++++.+.........++|.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~ 32 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVE 32 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccc
Confidence 58999999999999996643333333343433
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.96 E-value=0.00063 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++.|+||+|+|||||.+.|..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999999999999965
No 488
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.96 E-value=0.00067 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHH
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
..+.++.|+||||+||||+++++.
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 344699999999999999999974
No 489
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.96 E-value=0.00078 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.3
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.++++.|+.|+|||||.+.+.+
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999999999999975
No 490
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.96 E-value=0.00055 Score=53.33 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.3
Q ss_pred EEEEeecCCchhHHHHHHHh
Q psy4669 90 VTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~ 109 (139)
++|+||.|||||||+++|..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred EEEEECCCCCHHHHHHHHHH
Confidence 78999999999999999863
No 491
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.00077 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.++.+.|++|+||||+.+.|..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45778999999999999999999853
No 492
>PLN02796 D-glycerate 3-kinase
Probab=96.95 E-value=0.00054 Score=59.02 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=21.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++-+++|.|++|||||||++.|.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3556799999999999999999943
No 493
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.94 E-value=0.00085 Score=47.79 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=25.3
Q ss_pred EEEeecCCchhHHHHHHHhcCCcc-cccccEEEEeeEEEEE
Q psy4669 91 TIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVGF 130 (139)
Q Consensus 91 ~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq~i~ay~V~ 130 (139)
+++|+.|+|||||++.|.+..... ....+.|+..-.+.+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~ 41 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE 41 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE
Confidence 479999999999999997643221 2223445544444443
No 494
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.94 E-value=0.00058 Score=53.44 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=19.1
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++||+|||||||.++|..
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~ 24 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITK 24 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 495
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.00054 Score=64.59 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=23.3
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.-..+|.+|.|++|+||||||++|.
T Consensus 22 ~f~~gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 22 LFDSGIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHH
Confidence 5688999999999999999999996
No 496
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.93 E-value=0.00081 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.++|+.|+|||||.+.|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999873
No 497
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.93 E-value=0.00074 Score=49.88 Aligned_cols=22 Identities=45% Similarity=0.744 Sum_probs=19.8
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++++|++|+|||||++++.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~ 22 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLE 22 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHH
Confidence 3589999999999999999965
No 498
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.93 E-value=0.00075 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+..++++|+.|+|||||+++|.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~ 24 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG 24 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 45689999999999999999965
No 499
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.92 E-value=0.0022 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.4
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
-++++|+.|+|||||++++.+...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~ 28 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEF 28 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999975443
No 500
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.92 E-value=0.00071 Score=54.95 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.5
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.-=+.||+.|+|.||+||||||-+|+
T Consensus 33 LeF~apIT~i~GENGsGKSTLLEaiA 58 (233)
T COG3910 33 LEFRAPITFITGENGSGKSTLLEAIA 58 (233)
T ss_pred ccccCceEEEEcCCCccHHHHHHHHH
Confidence 34578999999999999999999996
Done!