Query psy4669
Match_columns 139
No_of_seqs 188 out of 1857
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:45:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 98.8 1.4E-09 4.7E-14 85.7 3.2 42 78-121 22-63 (235)
2 2pcj_A ABC transporter, lipopr 98.8 1.6E-09 5.4E-14 84.6 3.3 42 79-122 22-63 (224)
3 1g6h_A High-affinity branched- 98.8 1.7E-09 5.7E-14 86.1 3.2 43 78-122 24-66 (257)
4 1b0u_A Histidine permease; ABC 98.8 2.1E-09 7.1E-14 86.0 3.2 41 79-121 24-64 (262)
5 1ji0_A ABC transporter; ATP bi 98.8 2.6E-09 8.9E-14 84.2 3.1 42 79-122 24-65 (240)
6 4g1u_C Hemin import ATP-bindin 98.8 2.7E-09 9.1E-14 85.7 3.2 41 79-121 29-69 (266)
7 3gfo_A Cobalt import ATP-bindi 98.8 2.3E-09 7.8E-14 86.8 2.8 42 78-121 25-66 (275)
8 2pze_A Cystic fibrosis transme 98.8 3E-09 1E-13 83.3 3.1 43 78-122 25-67 (229)
9 2olj_A Amino acid ABC transpor 98.7 3.4E-09 1.2E-13 85.2 3.2 41 79-121 42-82 (263)
10 1mv5_A LMRA, multidrug resista 98.7 3.8E-09 1.3E-13 83.2 3.3 42 78-121 19-60 (243)
11 1sgw_A Putative ABC transporte 98.7 3.2E-09 1.1E-13 83.0 2.7 41 79-121 27-67 (214)
12 1vpl_A ABC transporter, ATP-bi 98.7 3.9E-09 1.3E-13 84.5 3.2 41 79-121 33-73 (256)
13 2ff7_A Alpha-hemolysin translo 98.7 3.8E-09 1.3E-13 83.8 3.1 42 78-121 26-67 (247)
14 2ihy_A ABC transporter, ATP-bi 98.7 4.4E-09 1.5E-13 85.1 3.1 43 78-122 38-80 (279)
15 2cbz_A Multidrug resistance-as 98.7 3.7E-09 1.3E-13 83.3 2.5 43 78-122 22-64 (237)
16 2yz2_A Putative ABC transporte 98.7 4.9E-09 1.7E-13 83.9 3.2 42 79-122 25-66 (266)
17 3fvq_A Fe(3+) IONS import ATP- 98.7 4E-09 1.4E-13 88.9 2.6 41 79-121 22-62 (359)
18 2ixe_A Antigen peptide transpo 98.7 5.3E-09 1.8E-13 84.1 3.2 42 78-121 36-77 (271)
19 2nq2_C Hypothetical ABC transp 98.7 5.4E-09 1.8E-13 83.3 3.1 41 79-121 23-63 (253)
20 2qi9_C Vitamin B12 import ATP- 98.7 6.8E-09 2.3E-13 82.7 3.0 41 79-122 18-58 (249)
21 2onk_A Molybdate/tungstate ABC 98.7 6.5E-09 2.2E-13 82.3 2.8 40 79-121 17-56 (240)
22 3rlf_A Maltose/maltodextrin im 98.7 6.5E-09 2.2E-13 88.3 2.5 41 79-121 21-61 (381)
23 1z47_A CYSA, putative ABC-tran 98.7 6.4E-09 2.2E-13 87.4 2.3 42 78-121 32-73 (355)
24 1zo1_I IF2, translation initia 98.7 2.2E-09 7.6E-14 93.9 -0.5 48 85-132 2-49 (501)
25 2yyz_A Sugar ABC transporter, 98.7 8.2E-09 2.8E-13 86.8 2.8 41 79-121 21-61 (359)
26 2it1_A 362AA long hypothetical 98.6 8.8E-09 3E-13 86.7 2.8 42 78-121 20-61 (362)
27 1g29_1 MALK, maltose transport 98.6 7.5E-09 2.6E-13 87.3 2.3 41 79-121 21-61 (372)
28 3tui_C Methionine import ATP-b 98.6 8.1E-09 2.8E-13 87.4 2.5 42 78-121 45-86 (366)
29 2bbs_A Cystic fibrosis transme 98.6 1E-08 3.5E-13 83.6 2.9 43 78-122 55-97 (290)
30 2d2e_A SUFC protein; ABC-ATPas 98.6 7.4E-09 2.5E-13 82.0 2.0 41 79-121 21-63 (250)
31 1v43_A Sugar-binding transport 98.6 9.8E-09 3.4E-13 86.7 2.8 41 79-121 29-69 (372)
32 1oxx_K GLCV, glucose, ABC tran 98.6 5.4E-09 1.8E-13 87.5 1.0 41 79-121 23-63 (353)
33 3d31_A Sulfate/molybdate ABC t 98.6 7.9E-09 2.7E-13 86.5 2.0 41 79-121 18-58 (348)
34 2ghi_A Transport protein; mult 98.6 1.4E-08 4.9E-13 81.0 3.0 41 78-121 37-77 (260)
35 2zu0_C Probable ATP-dependent 98.6 1.4E-08 4.8E-13 81.3 2.2 42 78-121 37-80 (267)
36 3nh6_A ATP-binding cassette SU 98.5 2.1E-08 7.3E-13 82.5 2.2 42 78-121 71-112 (306)
37 2pjz_A Hypothetical protein ST 98.5 3E-08 1E-12 79.6 3.0 39 79-121 23-61 (263)
38 1g7s_A Translation initiation 98.5 2.4E-08 8.3E-13 88.7 2.3 47 85-131 3-49 (594)
39 3izy_P Translation initiation 98.5 6.9E-09 2.4E-13 91.5 -1.3 48 84-131 1-48 (537)
40 3gd7_A Fusion complex of cysti 98.5 3E-08 1E-12 84.2 2.1 41 78-121 38-78 (390)
41 1htw_A HI0065; nucleotide-bind 98.5 2.5E-08 8.4E-13 74.5 1.2 30 80-109 26-55 (158)
42 1z6g_A Guanylate kinase; struc 98.5 3.9E-08 1.3E-12 75.8 2.2 32 78-109 14-45 (218)
43 3b5x_A Lipid A export ATP-bind 98.4 1.6E-07 5.4E-12 82.2 4.1 43 77-121 359-401 (582)
44 3ozx_A RNAse L inhibitor; ATP 98.4 2.4E-07 8.3E-12 81.2 4.7 39 81-121 288-326 (538)
45 3b60_A Lipid A export ATP-bind 98.4 1.5E-07 5E-12 82.4 3.0 42 78-121 360-401 (582)
46 4gp7_A Metallophosphoesterase; 98.4 1.4E-07 4.8E-12 69.9 2.4 27 80-106 2-28 (171)
47 1znw_A Guanylate kinase, GMP k 98.4 2E-07 6.7E-12 70.6 3.3 28 82-109 15-42 (207)
48 3b85_A Phosphate starvation-in 98.4 5.2E-08 1.8E-12 75.6 0.1 35 84-121 19-53 (208)
49 3qf4_B Uncharacterized ABC tra 98.3 2.1E-07 7E-12 81.9 3.6 43 77-121 371-413 (598)
50 2yl4_A ATP-binding cassette SU 98.3 1.4E-07 4.7E-12 82.8 2.5 41 79-121 362-402 (595)
51 3tr0_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 68.1 3.4 28 83-110 3-30 (205)
52 1yqt_A RNAse L inhibitor; ATP- 98.3 3E-07 1E-11 80.4 3.7 38 82-121 307-344 (538)
53 4a82_A Cystic fibrosis transme 98.3 1.5E-07 5.1E-12 82.4 1.4 42 78-121 358-399 (578)
54 3lnc_A Guanylate kinase, GMP k 98.3 2.8E-07 9.6E-12 70.6 2.4 32 77-108 17-48 (231)
55 1yqt_A RNAse L inhibitor; ATP- 98.3 5.2E-07 1.8E-11 78.9 4.3 38 79-119 40-77 (538)
56 3bk7_A ABC transporter ATP-bin 98.3 4.4E-07 1.5E-11 80.7 3.7 37 83-121 378-414 (607)
57 3qf4_A ABC transporter, ATP-bi 98.2 2.6E-07 8.9E-12 81.2 2.0 42 78-121 360-401 (587)
58 3ozx_A RNAse L inhibitor; ATP 98.2 5.6E-07 1.9E-11 78.9 3.5 36 83-120 21-56 (538)
59 4a74_A DNA repair and recombin 98.2 9E-07 3.1E-11 66.2 4.0 36 83-118 21-56 (231)
60 2jeo_A Uridine-cytidine kinase 98.2 6E-07 2.1E-11 69.7 2.9 32 78-109 16-47 (245)
61 3bk7_A ABC transporter ATP-bin 98.2 1.1E-06 3.8E-11 78.1 4.7 39 79-120 110-148 (607)
62 3euj_A Chromosome partition pr 98.2 2.9E-07 1E-11 80.3 0.8 38 79-119 22-59 (483)
63 3j16_B RLI1P; ribosome recycli 98.2 8.2E-07 2.8E-11 79.1 3.6 36 83-120 99-134 (608)
64 2ehv_A Hypothetical protein PH 98.2 5.3E-07 1.8E-11 68.3 2.0 27 83-109 26-52 (251)
65 2npi_A Protein CLP1; CLP1-PCF1 98.2 3.8E-07 1.3E-11 78.7 1.2 37 80-118 131-167 (460)
66 2iw3_A Elongation factor 3A; a 98.1 5.6E-07 1.9E-11 84.4 1.9 43 79-123 691-733 (986)
67 2gza_A Type IV secretion syste 98.1 8.9E-07 3E-11 73.5 2.9 42 79-122 167-208 (361)
68 2pt7_A CAG-ALFA; ATPase, prote 98.1 6.5E-07 2.2E-11 73.7 1.9 40 81-122 165-204 (330)
69 3b9q_A Chloroplast SRP recepto 98.1 7.8E-07 2.7E-11 72.6 2.2 40 79-120 92-131 (302)
70 1zp6_A Hypothetical protein AT 98.1 1.8E-06 6.2E-11 63.4 4.0 27 83-109 5-31 (191)
71 1s96_A Guanylate kinase, GMP k 98.1 1.4E-06 4.7E-11 67.9 3.3 28 82-109 11-38 (219)
72 3a00_A Guanylate kinase, GMP k 98.1 7.9E-07 2.7E-11 66.2 1.6 23 87-109 1-23 (186)
73 3c8u_A Fructokinase; YP_612366 98.1 1.5E-06 5E-11 65.8 3.0 26 84-109 19-44 (208)
74 2eyu_A Twitching motility prot 98.1 8.1E-07 2.8E-11 70.9 1.1 35 84-120 22-57 (261)
75 1tq4_A IIGP1, interferon-induc 98.1 7.4E-07 2.5E-11 76.2 0.8 29 89-119 71-99 (413)
76 2v9p_A Replication protein E1; 98.0 1E-06 3.6E-11 72.5 1.5 31 79-109 118-148 (305)
77 3asz_A Uridine kinase; cytidin 98.0 2.2E-06 7.5E-11 64.1 3.1 25 85-109 4-28 (211)
78 1u0l_A Probable GTPase ENGC; p 98.0 2.5E-06 8.4E-11 68.9 3.3 39 82-122 164-202 (301)
79 1kgd_A CASK, peripheral plasma 98.0 2.9E-06 9.8E-11 62.9 3.4 25 85-109 3-27 (180)
80 1lvg_A Guanylate kinase, GMP k 98.0 2.2E-06 7.7E-11 64.8 2.7 25 85-109 2-26 (198)
81 3ux8_A Excinuclease ABC, A sub 98.0 2.4E-06 8.1E-11 75.8 3.1 28 77-104 34-61 (670)
82 3g5u_A MCG1178, multidrug resi 98.0 3.7E-06 1.3E-10 80.0 4.6 42 78-121 1050-1091(1284)
83 2og2_A Putative signal recogni 98.0 1.9E-06 6.4E-11 72.4 2.2 40 79-120 149-188 (359)
84 2yhs_A FTSY, cell division pro 98.0 1.9E-06 6.5E-11 75.8 2.3 41 78-120 284-324 (503)
85 2j41_A Guanylate kinase; GMP, 98.0 3.5E-06 1.2E-10 62.3 3.4 28 83-110 2-29 (207)
86 3j16_B RLI1P; ribosome recycli 98.0 2.9E-06 9.8E-11 75.6 3.3 39 79-119 365-408 (608)
87 1nij_A Hypothetical protein YJ 98.0 2E-06 6.9E-11 69.9 2.2 36 86-121 3-44 (318)
88 1sq5_A Pantothenate kinase; P- 98.0 2.8E-06 9.5E-11 68.7 2.5 35 85-121 78-114 (308)
89 2dpy_A FLII, flagellum-specifi 98.0 3.2E-06 1.1E-10 72.4 2.9 37 82-120 152-188 (438)
90 3aez_A Pantothenate kinase; tr 98.0 1.9E-06 6.6E-11 70.5 1.5 26 84-109 87-112 (312)
91 3g5u_A MCG1178, multidrug resi 98.0 2.6E-06 8.9E-11 81.1 2.6 41 79-121 408-448 (1284)
92 3sop_A Neuronal-specific septi 97.9 2E-06 6.9E-11 68.9 1.5 21 89-109 4-24 (270)
93 1rj9_A FTSY, signal recognitio 97.9 2.7E-06 9.2E-11 69.5 2.2 25 85-109 100-124 (304)
94 1pui_A ENGB, probable GTP-bind 97.9 4.9E-06 1.7E-10 61.5 3.4 28 82-109 21-48 (210)
95 2lkc_A Translation initiation 97.9 5.4E-06 1.8E-10 59.1 3.3 48 84-131 5-52 (178)
96 2obl_A ESCN; ATPase, hydrolase 97.9 3.8E-06 1.3E-10 69.9 2.7 35 82-118 66-100 (347)
97 3kta_A Chromosome segregation 97.9 5.2E-06 1.8E-10 60.7 3.1 29 80-109 20-48 (182)
98 2bbw_A Adenylate kinase 4, AK4 97.9 3.2E-06 1.1E-10 65.3 1.9 34 86-119 26-60 (246)
99 1t9h_A YLOQ, probable GTPase E 97.9 3.5E-06 1.2E-10 69.4 2.2 39 82-122 168-206 (307)
100 1lw7_A Transcriptional regulat 97.9 2.4E-06 8.2E-11 70.3 0.9 37 79-117 160-198 (365)
101 2qm8_A GTPase/ATPase; G protei 97.9 3.2E-06 1.1E-10 69.6 1.7 30 80-109 48-77 (337)
102 4eun_A Thermoresistant glucoki 97.9 7.6E-06 2.6E-10 61.3 3.3 27 83-109 25-51 (200)
103 1ye8_A Protein THEP1, hypothet 97.9 6.8E-06 2.3E-10 61.9 3.1 21 89-109 2-22 (178)
104 2oap_1 GSPE-2, type II secreti 97.9 5.2E-06 1.8E-10 72.5 2.6 38 82-121 255-292 (511)
105 4f4c_A Multidrug resistance pr 97.9 6.7E-06 2.3E-10 78.5 3.4 41 79-121 436-476 (1321)
106 3ux8_A Excinuclease ABC, A sub 97.8 3.5E-06 1.2E-10 74.7 1.4 30 78-107 339-368 (670)
107 2yv5_A YJEQ protein; hydrolase 97.8 7.7E-06 2.6E-10 66.2 3.1 37 83-122 161-197 (302)
108 2i3b_A HCR-ntpase, human cance 97.8 2.7E-06 9.2E-11 65.0 0.3 23 87-109 1-23 (189)
109 3tau_A Guanylate kinase, GMP k 97.8 9.8E-06 3.4E-10 61.4 3.4 25 85-109 6-30 (208)
110 3uie_A Adenylyl-sulfate kinase 97.8 9.4E-06 3.2E-10 60.8 3.0 29 81-109 19-47 (200)
111 3e70_C DPA, signal recognition 97.8 5E-06 1.7E-10 68.8 1.5 35 84-120 126-160 (328)
112 3vaa_A Shikimate kinase, SK; s 97.8 1.1E-05 3.9E-10 60.3 3.3 33 77-109 15-47 (199)
113 4f4c_A Multidrug resistance pr 97.8 6.8E-06 2.3E-10 78.5 2.6 41 79-121 1097-1137(1321)
114 1tf7_A KAIC; homohexamer, hexa 97.8 3.4E-06 1.2E-10 72.8 0.4 42 79-120 30-72 (525)
115 2rcn_A Probable GTPase ENGC; Y 97.8 1.4E-05 5E-10 67.1 3.8 36 85-122 213-249 (358)
116 1kag_A SKI, shikimate kinase I 97.7 1.4E-05 4.7E-10 57.7 2.8 23 87-109 4-26 (173)
117 3ec2_A DNA replication protein 97.7 1.8E-05 6.1E-10 58.0 3.2 28 82-109 33-60 (180)
118 2bdt_A BH3686; alpha-beta prot 97.7 1.2E-05 4.1E-10 59.2 2.3 23 87-109 2-24 (189)
119 2qag_B Septin-6, protein NEDD5 97.7 1.2E-05 4E-10 69.2 2.5 32 79-110 32-65 (427)
120 4e22_A Cytidylate kinase; P-lo 97.7 9.4E-06 3.2E-10 63.6 1.5 24 85-108 25-48 (252)
121 1p9r_A General secretion pathw 97.7 1.2E-05 4E-10 68.7 2.2 35 84-120 164-198 (418)
122 2vp4_A Deoxynucleoside kinase; 97.7 1.6E-05 5.4E-10 61.2 2.7 29 81-109 14-42 (230)
123 2iw3_A Elongation factor 3A; a 97.7 1.2E-05 4E-10 75.5 2.3 31 79-109 453-483 (986)
124 3szr_A Interferon-induced GTP- 97.7 8.7E-06 3E-10 72.0 1.3 31 89-121 47-78 (608)
125 3ney_A 55 kDa erythrocyte memb 97.7 2.3E-05 8E-10 60.8 3.5 29 81-109 13-41 (197)
126 1cr0_A DNA primase/helicase; R 97.7 1.5E-05 5.2E-10 63.0 2.3 30 80-109 28-57 (296)
127 2ewv_A Twitching motility prot 97.7 9.8E-06 3.4E-10 67.6 1.1 35 84-120 133-168 (372)
128 1knq_A Gluconate kinase; ALFA/ 97.7 2.4E-05 8.3E-10 56.8 3.1 25 85-109 6-30 (175)
129 1qhl_A Protein (cell division 97.6 1.6E-06 5.3E-11 68.6 -3.7 27 82-109 23-49 (227)
130 2w0m_A SSO2452; RECA, SSPF, un 97.6 2.7E-05 9.2E-10 57.8 3.3 27 83-109 19-45 (235)
131 1rz3_A Hypothetical protein rb 97.6 1.4E-05 4.9E-10 60.1 1.8 26 84-109 19-44 (201)
132 1n0w_A DNA repair protein RAD5 97.6 3.7E-05 1.3E-09 57.9 4.0 34 82-115 19-52 (243)
133 4aby_A DNA repair protein RECN 97.6 6.5E-06 2.2E-10 67.8 -0.3 30 79-109 53-82 (415)
134 2f1r_A Molybdopterin-guanine d 97.6 7E-06 2.4E-10 61.9 -0.2 22 88-109 3-24 (171)
135 1oix_A RAS-related protein RAB 97.6 0.00012 4E-09 54.0 6.0 25 87-111 29-53 (191)
136 3jvv_A Twitching mobility prot 97.6 1.4E-05 4.9E-10 66.7 1.0 27 83-109 119-145 (356)
137 2qt1_A Nicotinamide riboside k 97.6 3.9E-05 1.3E-09 57.3 3.3 28 82-109 16-43 (207)
138 3o47_A ADP-ribosylation factor 97.5 5.6E-05 1.9E-09 61.6 4.1 94 14-112 97-190 (329)
139 1cke_A CK, MSSA, protein (cyti 97.5 5.1E-05 1.7E-09 57.0 3.4 23 87-109 5-27 (227)
140 2wjg_A FEOB, ferrous iron tran 97.5 6.4E-05 2.2E-09 54.2 3.4 25 86-110 6-30 (188)
141 1ega_A Protein (GTP-binding pr 97.5 3.3E-05 1.1E-09 62.3 2.1 28 85-112 6-33 (301)
142 2f9l_A RAB11B, member RAS onco 97.5 0.00011 3.9E-09 54.1 4.5 24 88-111 6-29 (199)
143 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.4E-05 1.8E-09 55.3 2.6 22 87-108 23-44 (149)
144 2qor_A Guanylate kinase; phosp 97.5 5.9E-05 2E-09 56.6 2.9 26 84-109 9-34 (204)
145 3lxx_A GTPase IMAP family memb 97.4 9.1E-05 3.1E-09 56.6 3.9 47 85-131 27-75 (239)
146 1s0u_A EIF-2-gamma, translatio 97.4 8.3E-05 2.8E-09 62.1 3.9 46 86-131 7-55 (408)
147 1w1w_A Structural maintenance 97.4 7E-05 2.4E-09 62.7 3.3 28 82-109 21-48 (430)
148 2x8a_A Nuclear valosin-contain 97.4 7E-05 2.4E-09 59.6 2.8 28 80-109 39-66 (274)
149 1e69_A Chromosome segregation 97.4 6.2E-05 2.1E-09 60.9 2.5 28 80-108 18-45 (322)
150 3t34_A Dynamin-related protein 97.4 0.00012 4.1E-09 59.9 4.3 36 86-121 33-68 (360)
151 2kjq_A DNAA-related protein; s 97.4 7.6E-05 2.6E-09 54.5 2.8 24 86-109 35-58 (149)
152 1jjv_A Dephospho-COA kinase; P 97.4 9E-05 3.1E-09 55.2 3.3 24 88-111 3-26 (206)
153 3tqc_A Pantothenate kinase; bi 97.4 7.9E-05 2.7E-09 61.6 3.0 25 85-109 90-114 (321)
154 2wji_A Ferrous iron transport 97.4 0.00012 4.1E-09 52.4 3.7 23 88-110 4-26 (165)
155 2o5v_A DNA replication and rep 97.4 6.1E-05 2.1E-09 63.1 2.3 30 79-109 19-48 (359)
156 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 6.4E-05 2.2E-09 62.3 2.4 28 80-108 17-44 (365)
157 3k53_A Ferrous iron transport 97.4 0.00013 4.5E-09 57.2 4.1 26 87-112 3-28 (271)
158 2cvh_A DNA repair and recombin 97.4 0.00011 3.9E-09 54.4 3.5 27 83-109 16-42 (220)
159 2y8e_A RAB-protein 6, GH09086P 97.4 0.00033 1.1E-08 49.4 5.7 27 88-114 15-41 (179)
160 1y63_A LMAJ004144AAA protein; 97.4 0.00011 3.9E-09 54.2 3.4 31 80-110 3-33 (184)
161 3clv_A RAB5 protein, putative; 97.4 0.00017 6E-09 51.5 4.3 45 87-131 7-51 (208)
162 1g16_A RAS-related protein SEC 97.4 0.0002 6.9E-09 50.1 4.5 25 89-113 5-29 (170)
163 2bme_A RAB4A, RAS-related prot 97.3 0.0004 1.4E-08 49.7 6.1 30 86-115 9-38 (186)
164 1udx_A The GTP-binding protein 97.3 4.4E-05 1.5E-09 65.1 1.1 31 79-109 149-179 (416)
165 1kk1_A EIF2gamma; initiation o 97.3 0.00011 3.8E-09 61.2 3.5 44 87-130 10-56 (410)
166 2pez_A Bifunctional 3'-phospho 97.3 0.0001 3.6E-09 53.8 3.0 25 85-109 3-27 (179)
167 3tw8_B RAS-related protein RAB 97.3 0.00025 8.5E-09 50.2 4.9 27 86-112 8-34 (181)
168 1wb1_A Translation elongation 97.3 0.00011 3.7E-09 63.3 3.4 47 86-132 18-71 (482)
169 1nlf_A Regulatory protein REPA 97.3 0.00013 4.3E-09 57.4 3.5 27 83-109 26-52 (279)
170 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.5E-09 54.0 3.3 23 88-110 2-24 (204)
171 3thx_B DNA mismatch repair pro 97.3 5.2E-05 1.8E-09 70.6 1.2 33 77-109 663-695 (918)
172 1ixz_A ATP-dependent metallopr 97.3 0.00012 4E-09 56.4 3.0 27 81-109 45-71 (254)
173 2dyk_A GTP-binding protein; GT 97.3 0.00026 9E-09 49.2 4.5 24 88-111 2-25 (161)
174 1wb9_A DNA mismatch repair pro 97.3 8.1E-05 2.8E-09 68.2 2.2 31 78-109 599-629 (800)
175 2dy1_A Elongation factor G; tr 97.3 0.00012 4.3E-09 65.3 3.1 28 82-109 4-31 (665)
176 1ek0_A Protein (GTP-binding pr 97.3 0.00045 1.5E-08 48.2 5.4 24 89-112 5-28 (170)
177 1z08_A RAS-related protein RAB 97.3 0.00034 1.2E-08 49.1 4.7 25 88-112 7-31 (170)
178 1pzn_A RAD51, DNA repair and r 97.2 0.00018 6.1E-09 59.4 3.7 37 81-117 125-161 (349)
179 2fn4_A P23, RAS-related protei 97.2 0.00046 1.6E-08 48.7 5.4 29 86-114 8-36 (181)
180 1svm_A Large T antigen; AAA+ f 97.2 0.00013 4.4E-09 61.5 2.8 30 80-109 162-191 (377)
181 1vg8_A RAS-related protein RAB 97.2 0.00037 1.3E-08 50.8 5.0 28 87-114 8-35 (207)
182 3t61_A Gluconokinase; PSI-biol 97.2 0.00016 5.3E-09 53.8 2.9 24 86-109 17-40 (202)
183 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00028 9.7E-09 59.8 4.8 30 83-112 16-45 (392)
184 1np6_A Molybdopterin-guanine d 97.2 0.00019 6.5E-09 54.1 3.3 24 86-109 5-28 (174)
185 3tkl_A RAS-related protein RAB 97.2 0.0005 1.7E-08 49.6 5.4 28 87-114 16-43 (196)
186 1iy2_A ATP-dependent metallopr 97.2 0.00016 5.5E-09 56.6 3.0 27 81-109 69-95 (278)
187 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.4E-09 51.1 3.1 22 88-109 2-23 (173)
188 1jwy_B Dynamin A GTPase domain 97.2 0.00046 1.6E-08 54.4 5.6 39 85-123 22-60 (315)
189 3thx_A DNA mismatch repair pro 97.2 9.6E-05 3.3E-09 68.9 1.8 31 78-108 653-683 (934)
190 3nwj_A ATSK2; P loop, shikimat 97.2 9.5E-05 3.2E-09 58.8 1.5 31 79-109 37-70 (250)
191 1odf_A YGR205W, hypothetical 3 97.2 0.00017 6E-09 58.3 3.1 25 85-109 29-53 (290)
192 1z2a_A RAS-related protein RAB 97.2 0.00035 1.2E-08 48.8 4.2 25 88-112 6-30 (168)
193 1wms_A RAB-9, RAB9, RAS-relate 97.2 0.00051 1.8E-08 48.6 5.2 25 88-112 8-32 (177)
194 3qks_A DNA double-strand break 97.2 0.00017 5.7E-09 55.0 2.6 22 87-108 23-44 (203)
195 3lw7_A Adenylate kinase relate 97.2 0.0002 6.9E-09 50.4 2.9 24 88-111 2-25 (179)
196 2cxx_A Probable GTP-binding pr 97.2 0.00025 8.6E-09 50.8 3.5 25 89-113 3-27 (190)
197 3lda_A DNA repair protein RAD5 97.2 0.00025 8.5E-09 60.1 3.9 37 82-118 173-209 (400)
198 3qkt_A DNA double-strand break 97.2 0.00017 5.8E-09 58.8 2.8 23 86-108 22-44 (339)
199 1ky3_A GTP-binding protein YPT 97.2 0.00026 9E-09 50.1 3.4 26 87-112 8-33 (182)
200 3cr8_A Sulfate adenylyltranfer 97.2 0.00016 5.6E-09 63.7 2.7 27 83-109 365-391 (552)
201 2gj8_A MNME, tRNA modification 97.2 0.00046 1.6E-08 50.0 4.7 25 86-110 3-27 (172)
202 2www_A Methylmalonic aciduria 97.2 0.0002 6.8E-09 59.0 3.1 25 85-109 72-96 (349)
203 3iby_A Ferrous iron transport 97.2 0.00028 9.7E-09 55.6 3.8 24 88-111 2-25 (256)
204 1z0f_A RAB14, member RAS oncog 97.2 0.00049 1.7E-08 48.5 4.7 28 86-113 14-41 (179)
205 2xtp_A GTPase IMAP family memb 97.1 0.00045 1.5E-08 53.2 4.8 28 85-112 20-47 (260)
206 2yvu_A Probable adenylyl-sulfa 97.1 0.00025 8.4E-09 52.0 3.2 27 83-109 9-35 (186)
207 1qhx_A CPT, protein (chloramph 97.1 0.00028 9.6E-09 50.9 3.4 23 87-109 3-25 (178)
208 1vht_A Dephospho-COA kinase; s 97.1 0.00027 9.3E-09 53.1 3.4 26 86-111 3-28 (218)
209 2oil_A CATX-8, RAS-related pro 97.1 0.00057 2E-08 49.5 4.9 29 85-113 23-51 (193)
210 1kao_A RAP2A; GTP-binding prot 97.1 0.00082 2.8E-08 46.5 5.5 25 89-113 5-29 (167)
211 4dhe_A Probable GTP-binding pr 97.1 0.00029 9.9E-09 52.2 3.3 46 85-130 27-74 (223)
212 2ygr_A Uvrabc system protein A 97.1 0.00012 3.9E-09 69.0 1.4 30 78-107 659-688 (993)
213 1z0j_A RAB-22, RAS-related pro 97.1 0.00084 2.9E-08 46.9 5.5 25 88-112 7-31 (170)
214 1svi_A GTP-binding protein YSX 97.1 0.00055 1.9E-08 49.4 4.7 27 85-111 21-47 (195)
215 1r2q_A RAS-related protein RAB 97.1 0.0008 2.7E-08 46.9 5.4 24 88-111 7-30 (170)
216 1uf9_A TT1252 protein; P-loop, 97.1 0.00032 1.1E-08 51.4 3.3 26 85-110 6-31 (203)
217 2ce2_X GTPase HRAS; signaling 97.1 0.00053 1.8E-08 47.3 4.2 26 89-114 5-30 (166)
218 1u8z_A RAS-related protein RAL 97.1 0.00049 1.7E-08 47.7 4.0 26 89-114 6-31 (168)
219 2efe_B Small GTP-binding prote 97.1 0.00058 2E-08 48.5 4.5 26 88-113 13-38 (181)
220 1vma_A Cell division protein F 97.1 0.00019 6.6E-09 58.7 2.1 30 80-109 97-126 (306)
221 2rhm_A Putative kinase; P-loop 97.1 0.00033 1.1E-08 50.9 3.2 25 85-109 3-27 (193)
222 2qnr_A Septin-2, protein NEDD5 97.1 0.00027 9.1E-09 57.1 2.8 20 91-110 22-41 (301)
223 3pqc_A Probable GTP-binding pr 97.0 0.0012 4.2E-08 47.2 6.1 27 85-111 21-47 (195)
224 1x3s_A RAS-related protein RAB 97.0 0.00095 3.2E-08 47.9 5.5 28 86-113 14-41 (195)
225 2r6f_A Excinuclease ABC subuni 97.0 0.00011 3.8E-09 68.9 0.6 30 78-107 641-670 (972)
226 2qu8_A Putative nucleolar GTP- 97.0 0.00053 1.8E-08 51.7 4.3 29 85-113 27-55 (228)
227 1ewq_A DNA mismatch repair pro 97.0 0.00018 6.3E-09 65.6 1.9 23 87-109 576-598 (765)
228 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00072 2.5E-08 49.6 4.8 27 87-113 8-34 (206)
229 1in4_A RUVB, holliday junction 97.0 0.00029 1E-08 57.1 2.9 23 87-109 51-73 (334)
230 1kht_A Adenylate kinase; phosp 97.0 0.00039 1.3E-08 50.2 3.2 23 87-109 3-25 (192)
231 3iij_A Coilin-interacting nucl 97.0 0.00037 1.3E-08 50.7 3.1 25 85-109 9-33 (180)
232 2wsm_A Hydrogenase expression/ 97.0 0.00036 1.2E-08 51.9 3.0 26 84-109 27-52 (221)
233 3cph_A RAS-related protein SEC 97.0 0.00076 2.6E-08 49.3 4.7 28 85-112 18-45 (213)
234 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00048 1.6E-08 57.4 4.0 26 86-111 178-203 (364)
235 2f7s_A C25KG, RAS-related prot 97.0 0.0011 3.6E-08 49.1 5.5 27 86-112 24-50 (217)
236 3lxw_A GTPase IMAP family memb 97.0 0.00051 1.7E-08 53.5 3.9 29 86-114 20-48 (247)
237 1m7g_A Adenylylsulfate kinase; 97.0 0.00039 1.3E-08 52.3 3.1 28 82-109 20-47 (211)
238 2qag_C Septin-7; cell cycle, c 97.0 0.0004 1.4E-08 59.2 3.4 22 90-111 34-55 (418)
239 1c1y_A RAS-related protein RAP 97.0 0.00076 2.6E-08 47.0 4.4 24 89-112 5-28 (167)
240 1z06_A RAS-related protein RAB 97.0 0.0008 2.7E-08 48.7 4.6 27 86-112 19-45 (189)
241 3kkq_A RAS-related protein M-R 97.0 0.0012 4.1E-08 47.1 5.5 27 87-113 18-44 (183)
242 3q85_A GTP-binding protein REM 97.0 0.00079 2.7E-08 47.2 4.4 21 89-109 4-24 (169)
243 3j25_A Tetracycline resistance 97.0 0.00024 8E-09 63.2 2.0 23 86-108 1-23 (638)
244 1zbd_A Rabphilin-3A; G protein 97.0 0.0012 4.3E-08 48.1 5.5 25 88-112 9-33 (203)
245 4fn5_A EF-G 1, elongation fact 97.0 0.00027 9.3E-09 63.4 2.3 25 84-108 10-34 (709)
246 3def_A T7I23.11 protein; chlor 97.0 0.00085 2.9E-08 52.3 4.9 26 87-112 36-61 (262)
247 2ew1_A RAS-related protein RAB 97.0 0.0013 4.3E-08 49.2 5.6 28 85-112 24-51 (201)
248 1ex7_A Guanylate kinase; subst 97.0 0.00039 1.3E-08 53.2 2.8 21 89-109 3-23 (186)
249 3t5g_A GTP-binding protein RHE 97.0 0.0014 4.8E-08 46.7 5.6 26 86-111 5-30 (181)
250 2elf_A Protein translation elo 96.9 0.00031 1E-08 58.6 2.4 36 89-132 23-58 (370)
251 3i8s_A Ferrous iron transport 96.9 0.00052 1.8E-08 54.3 3.6 25 87-111 3-27 (274)
252 2wwf_A Thymidilate kinase, put 96.9 0.00056 1.9E-08 50.5 3.6 25 85-109 8-32 (212)
253 2v54_A DTMP kinase, thymidylat 96.9 0.00052 1.8E-08 50.4 3.4 24 86-109 3-26 (204)
254 4eaq_A DTMP kinase, thymidylat 96.9 0.00044 1.5E-08 53.6 3.1 26 84-109 23-48 (229)
255 2jaq_A Deoxyguanosine kinase; 96.9 0.00047 1.6E-08 50.3 3.1 22 88-109 1-22 (205)
256 1q3t_A Cytidylate kinase; nucl 96.9 0.0005 1.7E-08 52.6 3.4 27 83-109 12-38 (236)
257 1xjc_A MOBB protein homolog; s 96.9 0.00045 1.5E-08 52.3 3.1 24 86-109 3-26 (169)
258 2ged_A SR-beta, signal recogni 96.9 0.00055 1.9E-08 49.5 3.4 27 85-111 46-72 (193)
259 2c95_A Adenylate kinase 1; tra 96.9 0.00059 2E-08 49.7 3.6 25 85-109 7-31 (196)
260 3cm0_A Adenylate kinase; ATP-b 96.9 0.00037 1.3E-08 50.6 2.5 24 86-109 3-26 (186)
261 1gtv_A TMK, thymidylate kinase 96.9 0.00035 1.2E-08 51.7 2.4 21 89-109 2-22 (214)
262 1tf7_A KAIC; homohexamer, hexa 96.9 0.00054 1.8E-08 59.0 3.9 28 82-109 276-303 (525)
263 3bc1_A RAS-related protein RAB 96.9 0.0012 4.3E-08 46.9 5.2 26 87-112 11-36 (195)
264 2gf9_A RAS-related protein RAB 96.9 0.0011 3.9E-08 47.8 5.1 26 87-112 22-47 (189)
265 3j2k_7 ERF3, eukaryotic polype 96.9 0.0015 5.1E-08 55.4 6.5 24 85-108 15-38 (439)
266 2o8b_B DNA mismatch repair pro 96.9 0.00028 9.5E-09 66.3 2.1 30 79-109 774-810 (1022)
267 3vqt_A RF-3, peptide chain rel 96.9 0.00028 9.6E-09 61.9 2.0 26 83-108 27-52 (548)
268 1zu4_A FTSY; GTPase, signal re 96.9 0.00029 9.9E-09 57.8 1.9 31 79-109 97-127 (320)
269 4dsu_A GTPase KRAS, isoform 2B 96.9 0.0011 3.6E-08 47.3 4.7 27 89-115 6-32 (189)
270 3trf_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 49.7 3.2 24 86-109 4-27 (185)
271 2o52_A RAS-related protein RAB 96.9 0.00084 2.9E-08 49.5 4.2 26 86-111 24-49 (200)
272 1nn5_A Similar to deoxythymidy 96.9 0.00066 2.3E-08 50.1 3.6 25 85-109 7-31 (215)
273 2zej_A Dardarin, leucine-rich 96.9 0.00054 1.8E-08 49.8 2.9 21 89-109 4-24 (184)
274 2a9k_A RAS-related protein RAL 96.9 0.00092 3.1E-08 47.4 4.0 28 87-114 18-45 (187)
275 3a1s_A Iron(II) transport prot 96.9 0.00056 1.9E-08 53.8 3.2 26 87-112 5-30 (258)
276 2erx_A GTP-binding protein DI- 96.9 0.0013 4.3E-08 45.9 4.6 22 89-110 5-26 (172)
277 2a5j_A RAS-related protein RAB 96.9 0.00083 2.8E-08 48.8 3.8 26 87-112 21-46 (191)
278 3con_A GTPase NRAS; structural 96.9 0.00071 2.4E-08 48.7 3.4 29 86-114 20-48 (190)
279 1r5b_A Eukaryotic peptide chai 96.8 0.00059 2E-08 58.3 3.4 23 86-108 42-64 (467)
280 2e87_A Hypothetical protein PH 96.8 0.00077 2.6E-08 55.1 3.9 26 85-110 165-190 (357)
281 2p67_A LAO/AO transport system 96.8 0.00065 2.2E-08 55.5 3.4 29 81-109 50-78 (341)
282 2bov_A RAla, RAS-related prote 96.8 0.00098 3.3E-08 48.4 4.0 29 86-114 13-41 (206)
283 1ly1_A Polynucleotide kinase; 96.8 0.00061 2.1E-08 48.7 2.9 22 88-109 3-24 (181)
284 2dr3_A UPF0273 protein PH0284; 96.8 0.00072 2.5E-08 50.7 3.3 27 81-107 17-43 (247)
285 2plr_A DTMP kinase, probable t 96.8 0.00064 2.2E-08 49.9 3.0 24 86-109 3-26 (213)
286 3oes_A GTPase rhebl1; small GT 96.8 0.0017 5.8E-08 47.6 5.3 32 83-114 20-51 (201)
287 2px0_A Flagellar biosynthesis 96.8 0.00073 2.5E-08 54.7 3.5 25 85-109 103-127 (296)
288 2il1_A RAB12; G-protein, GDP, 96.8 0.0009 3.1E-08 48.9 3.7 23 88-110 27-49 (192)
289 2fh5_B SR-beta, signal recogni 96.8 0.001 3.6E-08 49.0 4.1 28 85-112 5-32 (214)
290 2aka_B Dynamin-1; fusion prote 96.8 0.001 3.6E-08 51.7 4.3 28 86-113 25-52 (299)
291 2vf7_A UVRA2, excinuclease ABC 96.8 0.00019 6.5E-09 66.3 -0.1 29 79-107 515-544 (842)
292 3pih_A Uvrabc system protein A 96.8 0.00042 1.4E-08 64.6 2.2 27 78-104 601-627 (916)
293 1nks_A Adenylate kinase; therm 96.8 0.0007 2.4E-08 48.8 2.9 22 88-109 2-23 (194)
294 2hf9_A Probable hydrogenase ni 96.8 0.0012 4E-08 49.3 4.2 25 85-109 36-60 (226)
295 2fu5_C RAS-related protein RAB 96.8 0.00047 1.6E-08 49.3 1.9 23 88-110 9-31 (183)
296 2qag_A Septin-2, protein NEDD5 96.8 0.0012 4E-08 54.6 4.5 23 90-112 40-62 (361)
297 2vli_A Antibiotic resistance p 96.8 0.0006 2.1E-08 49.2 2.5 25 85-109 3-27 (183)
298 2bwj_A Adenylate kinase 5; pho 96.8 0.00071 2.4E-08 49.4 2.8 26 84-109 9-34 (199)
299 2fg5_A RAB-22B, RAS-related pr 96.8 0.002 6.9E-08 46.8 5.2 25 87-111 23-47 (192)
300 1ukz_A Uridylate kinase; trans 96.8 0.00093 3.2E-08 49.3 3.4 27 83-109 11-37 (203)
301 3ake_A Cytidylate kinase; CMP 96.7 0.00088 3E-08 49.2 3.2 22 88-109 3-24 (208)
302 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0018 6.2E-08 45.9 4.7 25 88-112 6-30 (186)
303 2g6b_A RAS-related protein RAB 96.7 0.002 6.7E-08 45.6 4.9 26 87-112 10-35 (180)
304 2hup_A RAS-related protein RAB 96.7 0.0016 5.5E-08 48.1 4.5 28 85-112 27-54 (201)
305 1moz_A ARL1, ADP-ribosylation 96.7 0.00088 3E-08 47.7 3.0 25 85-109 16-40 (183)
306 3t5d_A Septin-7; GTP-binding p 96.7 0.0012 4E-08 51.9 3.9 28 89-116 10-37 (274)
307 2nzj_A GTP-binding protein REM 96.7 0.00081 2.8E-08 47.3 2.7 23 88-110 5-27 (175)
308 3r20_A Cytidylate kinase; stru 96.7 0.00095 3.2E-08 52.8 3.2 25 85-109 7-31 (233)
309 1nrj_B SR-beta, signal recogni 96.7 0.0011 3.7E-08 49.0 3.4 27 85-111 10-36 (218)
310 1via_A Shikimate kinase; struc 96.7 0.00085 2.9E-08 48.7 2.6 22 88-109 5-26 (175)
311 2p5t_B PEZT; postsegregational 96.7 0.00081 2.8E-08 52.3 2.7 26 84-109 29-54 (253)
312 3reg_A RHO-like small GTPase; 96.7 0.0019 6.5E-08 46.9 4.5 29 86-114 22-50 (194)
313 1upt_A ARL1, ADP-ribosylation 96.7 0.00099 3.4E-08 46.7 2.8 26 86-111 6-31 (171)
314 1tev_A UMP-CMP kinase; ploop, 96.7 0.00097 3.3E-08 48.1 2.9 24 86-109 2-25 (196)
315 2p5s_A RAS and EF-hand domain 96.7 0.0021 7.3E-08 47.0 4.8 29 83-111 24-52 (199)
316 1zak_A Adenylate kinase; ATP:A 96.7 0.001 3.5E-08 50.1 3.1 25 85-109 3-27 (222)
317 2hxs_A RAB-26, RAS-related pro 96.6 0.00049 1.7E-08 48.7 1.1 24 88-111 7-30 (178)
318 2f6r_A COA synthase, bifunctio 96.6 0.0017 5.7E-08 51.7 4.3 26 84-109 72-97 (281)
319 2ze6_A Isopentenyl transferase 96.6 0.00092 3.1E-08 52.3 2.7 22 88-109 2-23 (253)
320 1sxj_E Activator 1 40 kDa subu 96.6 0.00058 2E-08 54.4 1.6 24 86-109 35-58 (354)
321 3m6a_A ATP-dependent protease 96.6 0.00055 1.9E-08 59.6 1.5 24 86-109 107-130 (543)
322 1ls1_A Signal recognition part 96.6 0.00073 2.5E-08 54.5 2.1 29 79-109 92-120 (295)
323 3auy_A DNA double-strand break 96.6 0.001 3.5E-08 54.8 3.0 22 87-108 25-46 (371)
324 1zd8_A GTP:AMP phosphotransfer 96.6 0.0014 4.6E-08 49.7 3.4 25 85-109 5-29 (227)
325 3q72_A GTP-binding protein RAD 96.6 0.0011 3.7E-08 46.4 2.7 21 89-109 4-24 (166)
326 3bwd_D RAC-like GTP-binding pr 96.6 0.0017 5.9E-08 46.0 3.8 26 86-111 7-32 (182)
327 1zd9_A ADP-ribosylation factor 96.6 0.0032 1.1E-07 45.6 5.2 29 85-113 20-48 (188)
328 3cpj_B GTP-binding protein YPT 96.6 0.002 6.9E-08 48.2 4.2 26 87-112 13-38 (223)
329 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0025 8.7E-08 45.9 4.6 25 88-112 8-32 (184)
330 2h17_A ADP-ribosylation factor 96.6 0.0015 5E-08 47.1 3.3 29 83-111 17-45 (181)
331 1a7j_A Phosphoribulokinase; tr 96.6 0.00082 2.8E-08 54.1 2.1 24 86-109 4-27 (290)
332 2gf0_A GTP-binding protein DI- 96.6 0.003 1E-07 45.5 4.9 25 87-111 8-32 (199)
333 3b1v_A Ferrous iron uptake tra 96.6 0.0015 5E-08 52.1 3.5 25 87-111 3-27 (272)
334 4bas_A ADP-ribosylation factor 96.5 0.0021 7.4E-08 46.3 4.1 30 82-111 12-41 (199)
335 1r8s_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 46.0 2.7 22 90-111 3-24 (164)
336 1gvn_B Zeta; postsegregational 96.5 0.0012 4.2E-08 52.8 3.0 25 85-109 31-55 (287)
337 1f6b_A SAR1; gtpases, N-termin 96.5 0.0015 5.1E-08 48.2 3.2 22 88-109 26-47 (198)
338 3mca_A HBS1, elongation factor 96.5 0.0008 2.7E-08 59.4 1.9 22 87-108 177-198 (592)
339 1qf9_A UMP/CMP kinase, protein 96.5 0.0016 5.4E-08 46.9 3.2 24 86-109 5-28 (194)
340 1mky_A Probable GTP-binding pr 96.5 0.0023 8E-08 53.7 4.7 25 86-110 179-203 (439)
341 2atv_A RERG, RAS-like estrogen 96.5 0.0023 8E-08 46.5 4.1 28 86-113 27-54 (196)
342 2fv8_A H6, RHO-related GTP-bin 96.5 0.0015 5.1E-08 48.2 3.1 32 81-112 19-50 (207)
343 2iyv_A Shikimate kinase, SK; t 96.5 0.0013 4.4E-08 47.9 2.6 23 87-109 2-24 (184)
344 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.8E-08 48.8 3.4 25 85-109 2-26 (220)
345 1fzq_A ADP-ribosylation factor 96.5 0.0016 5.4E-08 47.2 3.1 24 86-109 15-38 (181)
346 4ad8_A DNA repair protein RECN 96.5 0.00055 1.9E-08 58.8 0.7 29 80-109 54-82 (517)
347 2z0h_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 47.5 2.9 21 89-109 2-22 (197)
348 3dz8_A RAS-related protein RAB 96.5 0.0017 5.7E-08 47.2 3.1 27 85-111 21-47 (191)
349 1wf3_A GTP-binding protein; GT 96.5 0.0012 4.2E-08 53.2 2.5 28 86-113 6-33 (301)
350 1m2o_B GTP-binding protein SAR 96.5 0.0018 6.2E-08 47.4 3.2 25 87-111 23-47 (190)
351 2h57_A ADP-ribosylation factor 96.5 0.0014 4.8E-08 47.4 2.6 27 84-110 18-44 (190)
352 1d2e_A Elongation factor TU (E 96.5 0.0013 4.3E-08 54.8 2.6 21 89-109 5-25 (397)
353 3t1o_A Gliding protein MGLA; G 96.4 0.0015 5.1E-08 46.7 2.7 22 88-109 15-36 (198)
354 2yc2_C IFT27, small RAB-relate 96.4 0.00088 3E-08 48.6 1.4 26 85-110 18-43 (208)
355 2rdo_7 EF-G, elongation factor 96.4 0.0034 1.1E-07 56.5 5.4 26 84-109 7-32 (704)
356 3iev_A GTP-binding protein ERA 96.4 0.0015 5.3E-08 52.4 2.9 29 85-113 8-36 (308)
357 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0022 7.4E-08 54.6 3.9 29 83-111 18-46 (396)
358 1ksh_A ARF-like protein 2; sma 96.4 0.0041 1.4E-07 44.5 4.8 27 85-111 16-42 (186)
359 2cdn_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 47.4 3.4 26 84-109 17-42 (201)
360 3c5c_A RAS-like protein 12; GD 96.4 0.0054 1.9E-07 44.6 5.5 26 87-112 21-46 (187)
361 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6E-08 50.1 2.9 25 85-109 20-44 (252)
362 1e6c_A Shikimate kinase; phosp 96.4 0.0017 5.7E-08 46.4 2.6 22 88-109 3-24 (173)
363 2c78_A Elongation factor TU-A; 96.4 0.0014 4.8E-08 54.4 2.5 23 87-109 11-33 (405)
364 4gzl_A RAS-related C3 botulinu 96.4 0.0043 1.5E-07 45.8 4.9 30 85-114 28-57 (204)
365 2pbr_A DTMP kinase, thymidylat 96.4 0.0021 7.1E-08 46.5 3.0 21 89-109 2-22 (195)
366 2q3h_A RAS homolog gene family 96.3 0.0037 1.3E-07 45.4 4.3 28 84-111 17-44 (201)
367 1gwn_A RHO-related GTP-binding 96.3 0.0064 2.2E-07 45.3 5.7 28 86-113 27-54 (205)
368 3cb4_D GTP-binding protein LEP 96.3 0.0019 6.4E-08 57.4 3.1 24 86-109 3-26 (599)
369 3bos_A Putative DNA replicatio 96.3 0.0026 8.8E-08 47.0 3.4 24 86-109 51-74 (242)
370 3sjy_A Translation initiation 96.3 0.0022 7.4E-08 53.4 3.3 24 86-109 7-30 (403)
371 2atx_A Small GTP binding prote 96.3 0.003 1E-07 45.7 3.7 27 86-112 17-43 (194)
372 1dar_A EF-G, elongation factor 96.3 0.0026 9.1E-08 57.0 3.9 25 84-108 9-33 (691)
373 2gco_A H9, RHO-related GTP-bin 96.3 0.0023 7.9E-08 47.0 2.9 26 87-112 25-50 (201)
374 1jbk_A CLPB protein; beta barr 96.3 0.003 1E-07 44.5 3.4 24 86-109 42-65 (195)
375 1zj6_A ADP-ribosylation factor 96.3 0.0025 8.5E-08 45.9 3.0 25 85-109 14-38 (187)
376 1ak2_A Adenylate kinase isoenz 96.3 0.0027 9.4E-08 48.4 3.4 29 81-109 10-38 (233)
377 3cbq_A GTP-binding protein REM 96.3 0.0015 5.2E-08 48.2 1.9 22 87-108 23-44 (195)
378 2qby_A CDC6 homolog 1, cell di 96.3 0.0024 8.3E-08 50.4 3.2 25 85-109 43-67 (386)
379 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0023 7.7E-08 50.0 3.0 24 86-109 3-26 (260)
380 2x77_A ADP-ribosylation factor 96.3 0.0025 8.4E-08 45.9 2.9 24 86-109 21-44 (189)
381 1lv7_A FTSH; alpha/beta domain 96.3 0.0028 9.7E-08 48.6 3.4 22 88-109 46-67 (257)
382 2j1l_A RHO-related GTP-binding 96.2 0.0031 1.1E-07 46.9 3.5 25 87-111 34-58 (214)
383 2pt5_A Shikimate kinase, SK; a 96.2 0.0029 1E-07 45.0 3.0 21 89-109 2-22 (168)
384 3zvl_A Bifunctional polynucleo 96.2 0.0035 1.2E-07 52.6 3.9 29 81-109 252-280 (416)
385 3q3j_B RHO-related GTP-binding 96.2 0.0091 3.1E-07 44.6 5.8 29 86-114 26-54 (214)
386 3fb4_A Adenylate kinase; psych 96.2 0.0028 9.6E-08 47.1 2.9 21 89-109 2-22 (216)
387 3ihw_A Centg3; RAS, centaurin, 96.2 0.0027 9.3E-08 46.3 2.7 24 88-111 21-44 (184)
388 1zun_B Sulfate adenylate trans 96.1 0.0022 7.7E-08 53.8 2.6 22 88-109 25-46 (434)
389 2j0v_A RAC-like GTP-binding pr 96.1 0.0041 1.4E-07 45.7 3.7 25 88-112 10-34 (212)
390 3hr8_A Protein RECA; alpha and 96.1 0.0026 8.9E-08 53.2 2.9 27 83-109 57-83 (356)
391 3k1j_A LON protease, ATP-depen 96.1 0.0018 6.2E-08 56.7 2.0 36 80-117 53-88 (604)
392 1h65_A Chloroplast outer envel 96.1 0.005 1.7E-07 48.0 4.4 26 87-112 39-64 (270)
393 3l0i_B RAS-related protein RAB 96.1 0.00049 1.7E-08 50.5 -1.4 25 85-109 31-55 (199)
394 3tlx_A Adenylate kinase 2; str 96.1 0.0031 1E-07 48.9 3.1 24 86-109 28-51 (243)
395 2ywe_A GTP-binding protein LEP 96.1 0.0019 6.5E-08 57.5 2.1 25 85-109 4-28 (600)
396 2x2e_A Dynamin-1; nitration, h 96.1 0.0031 1.1E-07 51.4 3.1 31 86-116 30-60 (353)
397 2dhr_A FTSH; AAA+ protein, hex 96.1 0.003 1E-07 55.0 3.2 28 80-109 59-86 (499)
398 1njg_A DNA polymerase III subu 96.1 0.0036 1.2E-07 45.4 3.2 22 88-109 46-67 (250)
399 1jny_A EF-1-alpha, elongation 96.1 0.0024 8.3E-08 53.7 2.5 23 87-109 6-28 (435)
400 2p65_A Hypothetical protein PF 96.1 0.0035 1.2E-07 44.3 3.0 25 85-109 41-65 (187)
401 2ocp_A DGK, deoxyguanosine kin 96.1 0.0035 1.2E-07 47.9 3.2 24 86-109 1-24 (241)
402 2iwr_A Centaurin gamma 1; ANK 96.1 0.0028 9.4E-08 45.0 2.4 24 89-112 9-32 (178)
403 1fnn_A CDC6P, cell division co 96.1 0.0036 1.2E-07 49.8 3.2 23 87-109 44-66 (389)
404 3cf0_A Transitional endoplasmi 96.1 0.004 1.4E-07 49.5 3.5 26 84-109 46-71 (301)
405 2h5e_A Peptide chain release f 96.1 0.0029 1E-07 55.1 2.9 26 84-109 10-35 (529)
406 2b6h_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 45.6 3.1 25 85-109 27-51 (192)
407 1v5w_A DMC1, meiotic recombina 96.0 0.0056 1.9E-07 50.0 4.4 36 83-118 118-153 (343)
408 2grj_A Dephospho-COA kinase; T 96.0 0.0035 1.2E-07 47.6 2.9 24 86-109 11-34 (192)
409 3be4_A Adenylate kinase; malar 96.0 0.0045 1.5E-07 46.7 3.5 24 86-109 4-27 (217)
410 1f60_A Elongation factor EEF1A 96.0 0.0033 1.1E-07 53.5 3.0 22 88-109 8-29 (458)
411 3dl0_A Adenylate kinase; phosp 96.0 0.0037 1.3E-07 46.6 2.9 21 89-109 2-22 (216)
412 2h92_A Cytidylate kinase; ross 96.0 0.0036 1.2E-07 46.7 2.8 23 87-109 3-25 (219)
413 4djt_A GTP-binding nuclear pro 96.0 0.0067 2.3E-07 44.7 4.3 22 88-109 12-33 (218)
414 3tr5_A RF-3, peptide chain rel 96.0 0.0025 8.7E-08 55.6 2.2 25 84-108 10-34 (528)
415 3p26_A Elongation factor 1 alp 96.0 0.0027 9.2E-08 54.2 2.3 22 88-109 34-55 (483)
416 2w58_A DNAI, primosome compone 96.0 0.0045 1.5E-07 45.5 3.2 23 87-109 54-76 (202)
417 2qpt_A EH domain-containing pr 95.9 0.0061 2.1E-07 53.3 4.4 29 84-112 62-90 (550)
418 2hjg_A GTP-binding protein ENG 95.9 0.0064 2.2E-07 51.0 4.3 26 86-111 174-199 (436)
419 1ltq_A Polynucleotide kinase; 95.9 0.004 1.4E-07 48.7 2.9 22 88-109 3-24 (301)
420 3b9p_A CG5977-PA, isoform A; A 95.9 0.005 1.7E-07 47.9 3.3 25 85-109 52-76 (297)
421 3p32_A Probable GTPase RV1496/ 95.9 0.0039 1.3E-07 51.0 2.8 25 85-109 77-101 (355)
422 1sxj_C Activator 1 40 kDa subu 95.9 0.0038 1.3E-07 50.1 2.6 20 90-109 49-68 (340)
423 1zuh_A Shikimate kinase; alpha 95.9 0.0052 1.8E-07 44.0 3.0 23 87-109 7-29 (168)
424 4dcu_A GTP-binding protein ENG 95.8 0.0045 1.6E-07 52.2 3.0 26 85-110 21-46 (456)
425 3izq_1 HBS1P, elongation facto 95.8 0.0042 1.4E-07 55.1 2.9 25 85-109 165-189 (611)
426 3umf_A Adenylate kinase; rossm 95.8 0.0055 1.9E-07 47.7 3.2 29 81-109 23-51 (217)
427 2z43_A DNA repair and recombin 95.8 0.0085 2.9E-07 48.3 4.4 36 83-118 103-138 (324)
428 3pih_A Uvrabc system protein A 95.8 0.0043 1.5E-07 57.9 2.8 26 78-103 15-40 (916)
429 3llu_A RAS-related GTP-binding 95.8 0.0066 2.3E-07 44.3 3.3 26 84-109 17-42 (196)
430 2hjg_A GTP-binding protein ENG 95.8 0.0032 1.1E-07 52.9 1.8 25 88-112 4-28 (436)
431 1j8m_F SRP54, signal recogniti 95.7 0.0061 2.1E-07 49.3 3.3 29 80-109 92-120 (297)
432 1l8q_A Chromosomal replication 95.7 0.0052 1.8E-07 48.8 2.9 24 86-109 36-59 (324)
433 1p5z_B DCK, deoxycytidine kina 95.7 0.0032 1.1E-07 48.8 1.6 27 83-109 20-46 (263)
434 3h4m_A Proteasome-activating n 95.7 0.0067 2.3E-07 46.9 3.4 25 85-109 49-73 (285)
435 2ffh_A Protein (FFH); SRP54, s 95.7 0.0044 1.5E-07 53.0 2.5 29 79-109 92-120 (425)
436 1mky_A Probable GTP-binding pr 95.7 0.0086 2.9E-07 50.3 4.2 24 88-111 2-25 (439)
437 3exa_A TRNA delta(2)-isopenten 95.7 0.0056 1.9E-07 51.0 3.0 24 86-109 2-25 (322)
438 2vf7_A UVRA2, excinuclease ABC 95.7 0.0038 1.3E-07 57.7 2.1 27 78-104 27-53 (842)
439 2zr9_A Protein RECA, recombina 95.7 0.0065 2.2E-07 50.2 3.3 26 83-108 57-82 (349)
440 1ypw_A Transitional endoplasmi 95.7 0.006 2E-07 55.6 3.3 27 83-109 234-260 (806)
441 3geh_A MNME, tRNA modification 95.6 0.0023 7.7E-08 55.0 0.4 25 86-110 223-247 (462)
442 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0079 2.7E-07 45.5 3.4 25 85-109 37-61 (262)
443 1e4v_A Adenylate kinase; trans 95.6 0.0072 2.5E-07 45.2 3.1 21 89-109 2-22 (214)
444 2chg_A Replication factor C sm 95.6 0.0069 2.4E-07 43.5 2.9 23 87-109 38-60 (226)
445 3qq5_A Small GTP-binding prote 95.6 0.0021 7.2E-08 54.8 0.0 47 85-131 32-79 (423)
446 2xb4_A Adenylate kinase; ATP-b 95.6 0.007 2.4E-07 45.9 3.0 21 89-109 2-22 (223)
447 3gee_A MNME, tRNA modification 95.6 0.006 2.1E-07 52.6 2.9 45 86-130 232-277 (476)
448 3llm_A ATP-dependent RNA helic 95.6 0.0055 1.9E-07 46.7 2.3 25 83-107 72-96 (235)
449 2cjw_A GTP-binding protein GEM 95.6 0.0062 2.1E-07 44.7 2.5 21 89-109 8-28 (192)
450 2xex_A Elongation factor G; GT 95.5 0.0051 1.7E-07 55.2 2.3 25 85-109 8-32 (693)
451 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0067 2.3E-07 49.8 2.8 25 85-109 33-57 (392)
452 1puj_A YLQF, conserved hypothe 95.5 0.012 4.1E-07 47.1 4.2 28 85-112 118-145 (282)
453 4edh_A DTMP kinase, thymidylat 95.5 0.0079 2.7E-07 46.3 2.9 25 85-109 4-28 (213)
454 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0062 2.1E-07 51.4 2.5 22 88-109 25-46 (359)
455 2wkq_A NPH1-1, RAS-related C3 95.5 0.03 1E-06 43.5 6.3 32 84-115 152-183 (332)
456 3gj0_A GTP-binding nuclear pro 95.5 0.0041 1.4E-07 46.2 1.2 20 88-107 16-35 (221)
457 3a8t_A Adenylate isopentenyltr 95.4 0.0078 2.7E-07 50.3 3.0 25 85-109 38-62 (339)
458 2v1u_A Cell division control p 95.4 0.0078 2.7E-07 47.6 2.8 25 85-109 42-66 (387)
459 2ygr_A Uvrabc system protein A 95.4 0.0058 2E-07 57.6 2.3 26 78-103 37-62 (993)
460 2r6f_A Excinuclease ABC subuni 95.4 0.0059 2E-07 57.4 2.3 26 78-103 35-60 (972)
461 4fcw_A Chaperone protein CLPB; 95.4 0.011 3.6E-07 46.1 3.4 22 88-109 48-69 (311)
462 4tmk_A Protein (thymidylate ki 95.4 0.012 4E-07 45.5 3.6 24 86-109 2-25 (213)
463 3lv8_A DTMP kinase, thymidylat 95.4 0.011 3.8E-07 46.5 3.5 25 85-109 25-49 (236)
464 3th5_A RAS-related C3 botulinu 94.3 0.0028 9.7E-08 46.4 0.0 25 85-109 28-52 (204)
465 3foz_A TRNA delta(2)-isopenten 95.3 0.0091 3.1E-07 49.6 3.0 24 86-109 9-32 (316)
466 2j69_A Bacterial dynamin-like 95.3 0.0081 2.8E-07 53.9 2.9 32 84-115 66-97 (695)
467 3tmk_A Thymidylate kinase; pho 95.3 0.013 4.4E-07 45.5 3.7 25 85-109 3-27 (216)
468 3v9p_A DTMP kinase, thymidylat 95.3 0.0092 3.1E-07 46.7 2.8 25 85-109 23-47 (227)
469 1n0u_A EF-2, elongation factor 95.2 0.0061 2.1E-07 55.9 1.9 25 85-109 17-41 (842)
470 1jal_A YCHF protein; nucleotid 95.2 0.0086 2.9E-07 50.3 2.6 24 88-111 3-26 (363)
471 3crm_A TRNA delta(2)-isopenten 95.2 0.0098 3.4E-07 49.3 2.9 23 87-109 5-27 (323)
472 3ld9_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 46.3 3.0 26 84-109 18-43 (223)
473 2fna_A Conserved hypothetical 95.2 0.013 4.3E-07 45.7 3.3 22 88-109 31-52 (357)
474 3d3q_A TRNA delta(2)-isopenten 95.2 0.0096 3.3E-07 49.7 2.7 22 88-109 8-29 (340)
475 3kl4_A SRP54, signal recogniti 95.1 0.0097 3.3E-07 51.0 2.7 24 85-108 95-118 (433)
476 2dby_A GTP-binding protein; GD 95.1 0.01 3.5E-07 49.6 2.8 22 89-110 3-24 (368)
477 2ce7_A Cell division protein F 95.1 0.012 4E-07 51.0 3.1 20 90-109 52-71 (476)
478 2qen_A Walker-type ATPase; unk 95.1 0.013 4.4E-07 45.7 3.1 23 87-109 31-53 (350)
479 2qby_B CDC6 homolog 3, cell di 95.1 0.015 5.3E-07 46.3 3.6 24 86-109 44-67 (384)
480 1nd9_A Translation initiation 95.0 0.013 4.4E-07 34.6 2.3 46 1-50 3-48 (49)
481 1sxj_D Activator 1 41 kDa subu 95.0 0.013 4.4E-07 46.2 2.9 22 88-109 59-80 (353)
482 3t15_A Ribulose bisphosphate c 95.0 0.018 6.2E-07 45.7 3.7 25 85-109 34-58 (293)
483 3eph_A TRNA isopentenyltransfe 95.0 0.014 4.9E-07 50.0 3.2 23 87-109 2-24 (409)
484 3ice_A Transcription terminati 95.0 0.017 5.7E-07 49.9 3.6 30 80-109 167-196 (422)
485 3cnl_A YLQF, putative uncharac 94.9 0.016 5.4E-07 45.9 3.3 25 88-112 100-124 (262)
486 2z4s_A Chromosomal replication 94.9 0.012 4.1E-07 49.7 2.7 23 87-109 130-152 (440)
487 2r6a_A DNAB helicase, replicat 94.9 0.017 5.7E-07 48.8 3.5 27 83-109 199-225 (454)
488 1lnz_A SPO0B-associated GTP-bi 94.9 0.01 3.5E-07 49.0 2.0 28 84-111 155-182 (342)
489 2orw_A Thymidine kinase; TMTK, 94.8 0.019 6.5E-07 42.9 3.3 22 86-107 2-24 (184)
490 1yrb_A ATP(GTP)binding protein 94.8 0.024 8.3E-07 43.0 3.9 28 81-108 8-35 (262)
491 3syl_A Protein CBBX; photosynt 94.8 0.021 7.3E-07 44.4 3.6 24 86-109 66-89 (309)
492 1ofh_A ATP-dependent HSL prote 94.8 0.017 5.9E-07 44.5 3.0 24 86-109 49-72 (310)
493 2qmh_A HPR kinase/phosphorylas 94.7 0.018 6.2E-07 45.2 3.1 29 81-109 28-56 (205)
494 2g3y_A GTP-binding protein GEM 94.7 0.016 5.3E-07 44.1 2.6 22 88-109 38-59 (211)
495 2r62_A Cell division protease 94.6 0.0089 3E-07 45.8 1.0 20 90-109 47-66 (268)
496 2ius_A DNA translocase FTSK; n 94.6 0.015 5E-07 51.0 2.5 29 81-109 161-189 (512)
497 1xzp_A Probable tRNA modificat 94.6 0.0065 2.2E-07 52.5 0.3 27 85-111 241-267 (482)
498 1uxc_A FRUR (1-57), fructose r 94.5 0.067 2.3E-06 34.2 4.9 51 1-56 1-51 (65)
499 3pfi_A Holliday junction ATP-d 94.5 0.021 7.1E-07 45.2 2.9 24 86-109 54-77 (338)
500 1d2n_A N-ethylmaleimide-sensit 94.5 0.018 6.1E-07 44.5 2.5 25 85-109 62-86 (272)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.83 E-value=1.4e-09 Score=85.66 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|||||||||||++| .++.++..|.|.
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~p~~G~I~ 63 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNII--GCLDKPTEGEVY 63 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCceEEE
Confidence 357899999999999999999999999999 888888888875
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.82 E-value=1.6e-09 Score=84.63 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|.-
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYIL--GLLDAPTEGKVFL 63 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHH--TTSSCCSEEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEEE
Confidence 57899999999999999999999999999 8888888888753
No 3
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.81 E-value=1.7e-09 Score=86.08 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| +++.++..|.|+-
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l--~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVI--TGFLKADEGRVYF 66 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence 357899999999999999999999999999 8888888888753
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.79 E-value=2.1e-09 Score=85.99 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=37.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l--~Gl~~p~~G~i~ 64 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAII 64 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 57899999999999999999999999999 888888888875
No 5
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.77 E-value=2.6e-09 Score=84.17 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++++.+++|+|||||||||||++| .++.++..|.|+-
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAI--AGLVRAQKGKIIF 65 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence 57899999999999999999999999999 8888888887753
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.77 E-value=2.7e-09 Score=85.74 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=38.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++++++|+||||||||||+++| +++.++..|.|.
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~I~ 69 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLL--TGYLSPSHGECH 69 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHH--TSSSCCSSCEEE
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence 57899999999999999999999999999 888888888875
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.77 E-value=2.3e-09 Score=86.83 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=38.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||||||||+++| +++.++..|.|+
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l--~Gl~~p~~G~I~ 66 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNF--NGILKPSSGRIL 66 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCeEEE
Confidence 357899999999999999999999999999 888888888775
No 8
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.76 E-value=3e-09 Score=83.29 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| .++.++..|.|.-
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMI--MGELEPSEGKIKH 67 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCcCCccEEEE
Confidence 357899999999999999999999999999 8888888888764
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.75 E-value=3.4e-09 Score=85.18 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=37.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|+
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l--~Gl~~p~~G~I~ 82 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEII 82 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHH--HcCCCCCCcEEE
Confidence 57899999999999999999999999999 888888888875
No 10
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.75 E-value=3.8e-09 Score=83.23 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| .++.++..|.|.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 60 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEIT 60 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHH--TTSSCCSBSCEE
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 357899999999999999999999999999 888888888875
No 11
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.74 E-value=3.2e-09 Score=83.02 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=37.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|.
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l--~Gl~~p~~G~I~ 67 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTI--STYLKPLKGEII 67 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence 57899999999999999999999999999 888888888876
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.74 E-value=3.9e-09 Score=84.48 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=37.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l--~Gl~~p~~G~I~ 73 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRII--STLIKPSSGIVT 73 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 57899999999999999999999999999 888888888875
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.74 E-value=3.8e-09 Score=83.78 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| .++.++..|.|.
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~I~ 67 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVL 67 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence 357899999999999999999999999999 888888888875
No 14
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.72 E-value=4.4e-09 Score=85.12 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| +++.++..|.|.-
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l--~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNIL--NAYEPATSGTVNL 80 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCeEEEE
Confidence 357899999999999999999999999999 8888888887753
No 15
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.72 E-value=3.7e-09 Score=83.30 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=38.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| .++.++..|.|.-
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEGHVAI 64 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTCSEEEEEEEEE
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence 357899999999999999999999999999 8888888887754
No 16
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.72 E-value=4.9e-09 Score=83.86 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=38.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++++.+++|+|||||||||||++| .++.++..|.|.-
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i--~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIV--AGLIEPTSGDVLY 66 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence 57899999999999999999999999999 8888888888753
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.71 E-value=4e-09 Score=88.88 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=37.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++++++|+|||||||||||++| +|+.++..|.|.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~G~I~ 62 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCL--AGFEQPDSGEIS 62 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHH--hcCCCCCCcEEE
Confidence 57899999999999999999999999999 888888888775
No 18
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.71 E-value=5.3e-09 Score=84.11 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| .++.++..|.|.
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l--~Gl~~p~~G~I~ 77 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVL 77 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCCEEE
Confidence 357899999999999999999999999999 888888888875
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.71 E-value=5.4e-09 Score=83.30 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|+
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLL--LGIHRPIQGKIE 63 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 57899999999999999999999999999 888888999886
No 20
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.68 E-value=6.8e-09 Score=82.74 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++++.+++|+|||||||||||++| +++.++. |.|+-
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l--~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARM--AGMTSGK-GSIQF 58 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCE-EEEEE
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCC-eEEEE
Confidence 57899999999999999999999999999 8888888 87753
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.68 E-value=6.5e-09 Score=82.34 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=36.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+++ .+++|+|||||||||||++| +++.++..|.|.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~ 56 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELI--AGIVKPDRGEVR 56 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence 57889999 99999999999999999999 777888888775
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.66 E-value=6.5e-09 Score=88.32 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=37.4
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++++++|+|||||||||||++| +|+.++..|.|.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~G~I~ 61 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMI--AGLETITSGDLF 61 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHH--HcCCCCCCeEEE
Confidence 57899999999999999999999999999 778888888775
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.66 E-value=6.4e-09 Score=87.43 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|||||||||||++| +++.++..|.|.
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 73 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLI--AGLERPTKGDVW 73 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHH--hCCCCCCccEEE
Confidence 357899999999999999999999999999 777888888775
No 24
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.66 E-value=2.2e-09 Score=93.87 Aligned_cols=48 Identities=63% Similarity=0.892 Sum_probs=43.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
+|+|++++|||+|||||||+++|++..+...+.++|||++++|++...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~ 49 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE 49 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC
Confidence 689999999999999999999999888888889999999999987654
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.65 E-value=8.2e-09 Score=86.79 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 61 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLML--AGIYKPTSGEIY 61 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHH--HCCCCCCccEEE
Confidence 57899999999999999999999999999 777888888775
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.65 E-value=8.8e-09 Score=86.68 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=37.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 61 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTI--AGIYKPTSGKIY 61 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHH--hcCCCCCceEEE
Confidence 357899999999999999999999999999 777888888775
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.64 E-value=7.5e-09 Score=87.26 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 61 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMI--AGLEEPSRGQIY 61 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHH--HcCCCCCccEEE
Confidence 57899999999999999999999999999 778888888775
No 28
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.64 E-value=8.1e-09 Score=87.37 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+||||||||||+++| .++.++..|.|.
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i--~GL~~p~~G~I~ 86 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVL 86 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHH--hcCCCCCceEEE
Confidence 367899999999999999999999999999 777888888775
No 29
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.64 E-value=1e-08 Score=83.57 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=38.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
.+.++.++++.+++|+|||||||||||++| .|+.++..|.|.-
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~I~~ 97 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMI--MGELEPSEGKIKH 97 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHH--TTSSCEEEEEEEC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEEE
Confidence 357899999999999999999999999999 8888888887754
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.64 E-value=7.4e-09 Score=82.00 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It 121 (139)
+.++.++++.+++|+||||||||||+++| .++ .++..|.|.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l--~Gl~~~~p~~G~I~ 63 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKIL--AGDPEYTVERGEIL 63 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHH--HTCTTCEEEEEEEE
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCceEEE
Confidence 57899999999999999999999999999 555 566677764
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.64 E-value=9.8e-09 Score=86.69 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +++.++..|.|.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 69 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMI--AGLEEPTEGRIY 69 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCceEEE
Confidence 57899999999999999999999999999 667777777664
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.63 E-value=5.4e-09 Score=87.51 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=37.4
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++++++|+|||||||||||++| +|+.++..|.|.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 63 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRII--AGLDVPSTGELY 63 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHH--HTSSCCSEEEEE
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence 57899999999999999999999999999 778888888775
No 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.63 E-value=7.9e-09 Score=86.50 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++.+++|+|||||||||||++| +|+.++..|.|.
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~ 58 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELI--AGFHVPDSGRIL 58 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHH--HTSSCCSEEEEE
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHH--HcCCCCCCcEEE
Confidence 57899999999999999999999999999 778888888775
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.61 E-value=1.4e-08 Score=80.99 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| .++.++ .|.|.
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~-~G~I~ 77 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLL--YRFYDA-EGDIK 77 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCC-EEEEE
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHH--hccCCC-CeEEE
Confidence 357899999999999999999999999999 676665 57764
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.58 E-value=1.4e-08 Score=81.35 Aligned_cols=42 Identities=29% Similarity=0.264 Sum_probs=35.2
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It 121 (139)
.+.++.++++.+++|+|||||||||||++| +++ ..+..|.|.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l--~Gl~~~~p~~G~I~ 80 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATL--AGREDYEVTGGTVE 80 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTCTTCEEEEEEEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence 357899999999999999999999999999 555 345667664
No 36
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.54 E-value=2.1e-08 Score=82.49 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++.+++|+||||||||||+++| .++..+..|.|+
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll--~gl~~p~~G~I~ 112 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLL--FRFYDISSGCIR 112 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHH--TTSSCCSEEEEE
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCcEEE
Confidence 357889999999999999999999999999 888888888775
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.54 E-value=3e-08 Score=79.62 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=35.5
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++ +.+++|+|||||||||||++| +++. +..|.|.
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l--~Gl~-p~~G~I~ 61 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAI--SGLL-PYSGNIF 61 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHH--TTSS-CCEEEEE
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHH--hCCC-CCCcEEE
Confidence 5789999 999999999999999999999 8888 8888875
No 38
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.52 E-value=2.4e-08 Score=88.67 Aligned_cols=47 Identities=57% Similarity=0.889 Sum_probs=39.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
.|.|+++|+||+|||||||+++|++..+...+.|++||++|++.+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~ 49 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPM 49 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEee
Confidence 57899999999999999999999988777888899999999998864
No 39
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.52 E-value=6.9e-09 Score=91.45 Aligned_cols=48 Identities=73% Similarity=1.039 Sum_probs=44.2
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
++|+|++++|||+|||||||+++|++..+...+.+++||++++|++.+
T Consensus 1 i~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~ 48 (537)
T 3izy_P 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL 48 (537)
T ss_dssp CCCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe
Confidence 368999999999999999999999988888889999999999998876
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.50 E-value=3e-08 Score=84.20 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+|||||||||||++| +++.+ ..|.|.
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~-~~G~I~ 78 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLN-TEGEIQ 78 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHH--HTCSE-EEEEEE
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHH--hCCCC-CCeEEE
Confidence 457899999999999999999999999999 55555 556553
No 41
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.49 E-value=2.5e-08 Score=74.53 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=27.5
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.+++++||+|+|||||+++|.+
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999999999999999965
No 42
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.48 E-value=3.9e-08 Score=75.77 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.++++.+++|+||||||||||+++|.+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999999999999999965
No 43
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.40 E-value=1.6e-07 Score=82.19 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.+++|++++|+||||||||||+++| .++.++..|.|.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~ 401 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF--TRFYDVDSGSIC 401 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCCEEE
Confidence 3468899999999999999999999999999 788888888775
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.37 E-value=2.4e-07 Score=81.23 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=35.0
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
++.++++++++|+|+||||||||+++| +++.++..|.|+
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARIL--VGEITADEGSVT 326 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSBCCEE
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence 345689999999999999999999999 888888999885
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.36 E-value=1.5e-07 Score=82.41 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|++++|+||||||||||+++| .++.++..|.|.
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l--~g~~~p~~G~i~ 401 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLI--TRFYDIDEGHIL 401 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHH--TTTTCCSEEEEE
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hhccCCCCCeEE
Confidence 356889999999999999999999999999 888888888775
No 46
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.36 E-value=1.4e-07 Score=69.85 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHH
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDT 106 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~ 106 (139)
.++.++++++++++|+||||||||+++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 467899999999999999999999994
No 47
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.36 E-value=2e-07 Score=70.62 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=23.1
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++++++|+||||||||||+++|.+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999965
No 48
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.35 E-value=5.2e-08 Score=75.59 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=30.8
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
++++.+++|+|||||||||||++| +++ ++..|.|.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l--~Gl-~p~~G~I~ 53 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAK--AVQ-ALQSKQVS 53 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHH--HHH-HHHTTSCS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHH--hcC-CCcCCeee
Confidence 588999999999999999999999 556 77788874
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.35 E-value=2.1e-07 Score=81.93 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
-.+.++.++++++++|+||||||||||+++| .++.++..|.|+
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~ 413 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLL--MRFYDVDRGQIL 413 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHH--TTSSCCSEEEEE
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCcCCCCeEEE
Confidence 3467889999999999999999999999999 888888888875
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.34 E-value=1.4e-07 Score=82.77 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=37.5
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+++|++++|+||||||||||+++| .++.++..|.|.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l--~g~~~p~~G~i~ 402 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRLYDPASGTIS 402 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHH--TTSSCCSEEEEE
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCcEEE
Confidence 56889999999999999999999999999 888888888775
No 51
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.31 E-value=3.1e-07 Score=68.07 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
...++.+++|+||+|||||||+++|.+.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4467899999999999999999999763
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.30 E-value=3e-07 Score=80.41 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=33.2
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++++++++|+|+||||||||+++| .++.++..|.|.
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKML--AGVEEPTEGKIE 344 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHH--HTSSCCSBCCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 33579999999999999999999999 777888888775
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.29 E-value=1.5e-07 Score=82.43 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+||||||||||+++| .+..++..|.|+
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~ 399 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLI--PRFYDVTSGQIL 399 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTT--TTSSCCSEEEEE
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHH--hcCCCCCCcEEE
Confidence 356789999999999999999999999999 888888888875
No 54
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.27 E-value=2.8e-07 Score=70.58 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
..+.++.++++.+++|+||||||||||+++|.
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999999999999996
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.26 E-value=5.2e-07 Score=78.87 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
+.+ .+.++++++|+|+|||||||||++| +|+..+..|.
T Consensus 40 ~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l--~Gl~~p~~G~ 77 (538)
T 1yqt_A 40 RLP-VVKEGMVVGIVGPNGTGKSTAVKIL--AGQLIPNLCG 77 (538)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHH--HTSSCCCTTT
T ss_pred CcC-cCCCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCc
Confidence 456 7899999999999999999999999 6667666666
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.26 E-value=4.4e-07 Score=80.73 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=32.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++++++|+||||+||||||++| +++.++..|.|.
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKML--AGVEEPTEGKVE 414 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHH--HTSSCCSBSCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence 3689999999999999999999999 777888888774
No 57
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.24 E-value=2.6e-07 Score=81.20 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=38.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.++++++++|+||||||||||+++| .++.++..|.|+
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l--~g~~~~~~G~i~ 401 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLI--PRLIDPERGRVE 401 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTT--TTSSCCSEEEEE
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCccCCCcEEE
Confidence 356789999999999999999999999999 888888888875
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.22 E-value=5.6e-07 Score=78.90 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=31.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
..+++++++|+||||||||||+++| +++..+..|.|
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL--~Gl~~p~~G~i 56 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKIL--AGEIIPNFGDP 56 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHH--TTSSCCCTTCT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCCcc
Confidence 4568899999999999999999999 88888888866
No 59
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.21 E-value=9e-07 Score=66.24 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=28.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
-++++.+++|+||||||||||+++|.+....++..|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 688999999999999999999999965434433333
No 60
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.20 E-value=6e-07 Score=69.70 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++.++++.+++|+|++|||||||+++|.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999976
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.18 E-value=1.1e-06 Score=78.10 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=33.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
+.+ .++++.+++|+|+||+||||||++| +|+..+..|.+
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL--~Gll~p~~G~~ 148 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKIL--AGQLIPNLCED 148 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHH--TTSSCCCTTTT
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHH--hCCCCCCCCcc
Confidence 455 7899999999999999999999999 77777777763
No 62
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.18 E-value=2.9e-07 Score=80.29 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.5
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
+.++.+++ .+++|+|||||||||||++|.+ +..+..|.
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G--l~~p~~G~ 59 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT--ALIPDLTL 59 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHH--HHCCCTTT
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc--CCCCCCCE
Confidence 56788899 9999999999999999999954 44444443
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.17 E-value=8.2e-07 Score=79.11 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=32.5
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.+.++.+++|+||||+||||||++| +++..+..|.|
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL--~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKIL--AGKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHH--HTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHH--hcCCCCCCceE
Confidence 5679999999999999999999999 77888888876
No 64
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.17 E-value=5.3e-07 Score=68.33 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=25.2
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.+++|+||||+|||||+++|.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999963
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3.8e-07 Score=78.68 Aligned_cols=37 Identities=30% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
.++.++++++++|+|+||||||||+++|. ++..+..|
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~--Gl~~p~~G 167 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLC--SYALKFNA 167 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHH--HTTHHHHC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHh--CcccccCC
Confidence 46778899999999999999999999994 44444444
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.14 E-value=5.6e-07 Score=84.38 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=39.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
+.++.+.++.+++|+|+||+|||||+++| +|+..+..|.|.-+
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklL--aGll~P~sG~I~~~ 733 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVL--TGELLPTSGEVYTH 733 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHH--TTSSCCSEEEEEEC
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEEc
Confidence 46788999999999999999999999999 88888888988764
No 67
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=8.9e-07 Score=73.51 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.++.++++.+++|+|++|||||||+++| .+..++..|.|+-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l--~~~~~~~~g~I~i 208 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKAL--MQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHH--HTTSCTTSCEEEE
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHH--HhcCCCCceEEEE
Confidence 34567889999999999999999999999 6667767776653
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.13 E-value=6.5e-07 Score=73.71 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=34.0
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
++.++++.+++|+|++|||||||+++| .+..++..|.|+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l--~g~~~~~~g~i~i 204 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSI--MEFIPKEERIISI 204 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHG--GGGSCTTSCEEEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCcEEEE
Confidence 456788999999999999999999999 7777777777653
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.12 E-value=7.8e-07 Score=72.57 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
..++...++.+++++|++|+|||||++.|.+ ...+..|.+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag--~l~~~~g~V 131 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH--RLKNEGTKV 131 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence 4667788999999999999999999999954 444444444
No 70
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.12 E-value=1.8e-06 Score=63.37 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.+++|+|++|||||||+++|.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999999955
No 71
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.11 E-value=1.4e-06 Score=67.93 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.9
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.-.+++.+++|+||||+|||||+++|.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999999999965
No 72
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.09 E-value=7.9e-07 Score=66.20 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+||||||||||+++|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999965
No 73
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.09 E-value=1.5e-06 Score=65.78 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.3
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+++|+|+||||||||+++|.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999944
No 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.06 E-value=8.1e-07 Score=70.92 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=29.1
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-cccE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGI 120 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-~G~I 120 (139)
++++.+++|+||+|||||||+++| .+...+. .|.|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l--~g~~~~~~~G~I 57 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASM--IDYINQTKSYHI 57 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHH--HHHHHHHCCCEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHH--HHhCCCCCCCEE
Confidence 789999999999999999999999 4455544 5655
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.05 E-value=7.4e-07 Score=76.19 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=23.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
+++|+|+||+|||||+++|. |+..++.|.
T Consensus 71 ~valvG~nGaGKSTLln~L~--Gl~~p~~Gs 99 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR--GIGNEEEGA 99 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH--TCCTTSTTS
T ss_pred EEEEECCCCCcHHHHHHHHh--CCCCccCce
Confidence 99999999999999999994 444444443
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.04 E-value=1e-06 Score=72.54 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.++++.+++|+||+|+|||||+++|.+
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4578899999999999999999999999954
No 77
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.04 E-value=2.2e-06 Score=64.14 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+++|+|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999999999965
No 78
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=2.5e-06 Score=68.89 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.3
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+....+.+++++|+||+||||||++| .+...+..|.|.-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l--~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAI--NPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHH--STTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHh--cccccccccceec
Confidence 34567899999999999999999999 6666666666653
No 79
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=2.9e-06 Score=62.93 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|+||||+|||||++.|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999999965
No 80
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.01 E-value=2.2e-06 Score=64.80 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+++|+||||+|||||++.|.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999999965
No 81
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.00 E-value=2.4e-06 Score=75.82 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHH
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLL 104 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL 104 (139)
-.++++.++++++++|+||||||||||+
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4568999999999999999999999997
No 82
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.00 E-value=3.7e-06 Score=80.02 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=37.9
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.+.++.+++|++++|+|++|||||||+++| .++.++..|.|.
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l--~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVF 1091 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHH--TTSSCCSEEEEE
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence 568999999999999999999999999999 888888878764
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.99 E-value=1.9e-06 Score=72.40 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=31.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
..++.+.++.+++++|+||+|||||++.|. +...+..|.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~La--g~l~~~~G~V 188 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLA--HRLKNEGTKV 188 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHH--HHHHHTTCCE
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHH--hhccccCCEE
Confidence 467778899999999999999999999995 4444444544
No 84
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.99 E-value=1.9e-06 Score=75.77 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.+.++.+.++.+++|+|+||||||||+++|.+ ......|.|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~~G~V 324 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR--QFEQQGKSV 324 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHH--HhhhcCCeE
Confidence 46778889999999999999999999999954 344444444
No 85
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.99 E-value=3.5e-06 Score=62.29 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.++++.+++|+|++|||||||++.|.+.
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999999654
No 86
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.9e-06 Score=75.61 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=32.2
Q ss_pred CCCccccCC-----CEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669 79 DPSVLMKRP-----PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119 (139)
Q Consensus 79 ~~~~~~~r~-----pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~ 119 (139)
+.++.+.++ ++++|+|+||+|||||+++| +++.++..|.
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l--~Gl~~p~~G~ 408 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL--AGALKPDEGQ 408 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHH--HTSSCCSBCC
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHH--hcCCCCCCCc
Confidence 455666666 88999999999999999999 7777777774
No 87
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.99 E-value=2e-06 Score=69.92 Aligned_cols=36 Identities=36% Similarity=0.602 Sum_probs=28.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC------CcccccccEE
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS------VVKSEFGGIT 121 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~------v~~~e~G~It 121 (139)
+.|+++|+|++|+||||||+.|.+.. ++.+++|.|.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~ 44 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS 44 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC
Confidence 56899999999999999999996532 2366888653
No 88
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.96 E-value=2.8e-06 Score=68.69 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcc--cccccEE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--SEFGGIT 121 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~e~G~It 121 (139)
.++.+++|+|++|||||||+++|.+ ... +..|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~--~l~~~~~~G~i~ 114 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVE 114 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhCCCCCeEE
Confidence 6788999999999999999999954 333 4556553
No 89
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.96 E-value=3.2e-06 Score=72.42 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.8
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
+.+.++.+++|+|+|||||||||++| ++...+..|.|
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~I--ag~~~~~~G~i 188 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMM--ARYTRADVIVV 188 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHH--HHHSCCSEEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHH--hcccCCCeEEE
Confidence 78999999999999999999999999 54555555533
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.95 E-value=1.9e-06 Score=70.53 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=24.0
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+++|+|+||||||||+++|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 67899999999999999999999954
No 91
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.95 E-value=2.6e-06 Score=81.11 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.++++++++|+|+||||||||+++| .+..++..|.|+
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll--~g~~~~~~G~i~ 448 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVS 448 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHHHHT--TTSSCCSEEEEE
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence 56789999999999999999999999999 888888888875
No 92
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.95 E-value=2e-06 Score=68.91 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++|+|+||+|||||+++|.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999954
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=2.7e-06 Score=69.51 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++++||+|||||||+++|.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3688999999999999999999953
No 94
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.94 E-value=4.9e-06 Score=61.48 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.1
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.++..++++|++|+|||||+++|.+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5677889999999999999999999944
No 95
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.93 E-value=5.4e-06 Score=59.12 Aligned_cols=48 Identities=67% Similarity=1.060 Sum_probs=36.5
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
.++.+.++++|+.|+|||||++++.+..+......+++.+++.+.+.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV 52 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe
Confidence 457788999999999999999999876666555556666666555544
No 96
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.92 E-value=3.8e-06 Score=69.87 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=29.8
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
+.+.++.+++|+|+||+|||||+++| ++...++.|
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I--~g~~~~~~g 100 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMI--CNGASADII 100 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHH--HHHSCCSEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHH--hcCCCCCEE
Confidence 77899999999999999999999999 444555544
No 97
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.91 E-value=5.2e-06 Score=60.72 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.++ +++|+|+||||||||+++|..
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 45556655 999999999999999999964
No 98
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.91 E-value=3.2e-06 Score=65.34 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh-cCCccccccc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN-TSVVKSEFGG 119 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~-~~v~~~e~G~ 119 (139)
++.+++|+|++|||||||+++|.. .++.....|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~ 60 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHH
Confidence 578999999999999999999951 1554444443
No 99
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=3.5e-06 Score=69.40 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=24.8
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
+.+.++.+++++|+||+|||||+++| .+......|.|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L--~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAI--SPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHH--CC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHh--cccccccccceee
Confidence 34567899999999999999999999 6666666666553
No 100
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.88 E-value=2.4e-06 Score=70.27 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.3
Q ss_pred CCCccccC--CCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669 79 DPSVLMKR--PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF 117 (139)
Q Consensus 79 ~~~~~~~r--~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~ 117 (139)
.++..+.+ +..++|+|+||||||||+++|.+ +..+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~g--l~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAA--VFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHH--HTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHH--HhCCCc
Confidence 46777888 99999999999999999999954 444444
No 101
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.88 E-value=3.2e-06 Score=69.60 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.++++++|+|++|+|||||+++|.+
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456778999999999999999999999953
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.87 E-value=7.6e-06 Score=61.33 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.5
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+++++++|+|++|||||||+++|.+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999999964
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=6.8e-06 Score=61.87 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++|+||||||||||+++|.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 104
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.86 E-value=5.2e-06 Score=72.45 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=31.9
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++++.+++|+||+||||||||++| .+..++..|-++
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL--~~~i~~~~giit 292 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAI--MMFIPPDAKVVS 292 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHH--GGGSCTTCCEEE
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHH--HhhCCCCCCEEE
Confidence 34678999999999999999999999 677777777655
No 105
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.85 E-value=6.7e-06 Score=78.50 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+++|..++|+||+|||||||++.| .+...+..|.|+
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll--~~~~~~~~G~I~ 476 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLL--LRYYDVLKGKIT 476 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHH--TTSSCCSEEEEE
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHh--ccccccccCccc
Confidence 56889999999999999999999999999 888999999876
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.85 E-value=3.5e-06 Score=74.71 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
.+.++.++++++++|+||||||||||+++|
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 467889999999999999999999999865
No 107
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.84 E-value=7.7e-06 Score=66.21 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ 122 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq 122 (139)
....+.+++++|+||+|||||+++| . ......|.|..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l--~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRL--T-GEELRTQEVSE 197 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHH--H-SCCCCCSCC--
T ss_pred hhccCcEEEEECCCCCCHHHHHHHH--H-HhhCccccccc
Confidence 4456889999999999999999999 5 56666777664
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=2.7e-06 Score=64.97 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|+|+||+|||||++.|.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHh
Confidence 46899999999999999999954
No 109
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=9.8e-06 Score=61.43 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=23.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++++|+||+|+|||||++.|.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5789999999999999999999965
No 110
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.81 E-value=9.4e-06 Score=60.82 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.2
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
....+++.+++|+|++|||||||.+.|.+
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999999954
No 111
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.80 E-value=5e-06 Score=68.75 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=27.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
.+++.+++++|++|+|||||+++|. +...+..|.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~La--g~l~~~~g~V 160 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLA--NWLKNHGFSV 160 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH--HHHHhcCCEE
Confidence 3689999999999999999999994 4444555544
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=1.1e-05 Score=60.34 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.++..+++++++|+|++||||||+.+.|.+
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 446788889999999999999999999999964
No 113
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.80 E-value=6.8e-06 Score=78.47 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=38.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
+.++.+++|+.++|+|++|||||||++.| .++..+..|.|+
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL--~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIF 1137 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHH--TTSSCCSSSEEE
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHH--hcCccCCCCEEE
Confidence 56789999999999999999999999999 899999999885
No 114
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.80 E-value=3.4e-06 Score=72.77 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCCc-cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 79 DPSV-LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 79 ~~~~-~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
+.++ .++++.+++|+|+||||||||++.+.-.++.++..|.+
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i 72 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4677 89999999999999999999999932134444334443
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=1.4e-05 Score=67.13 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcc-cccccEEE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQ 122 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq 122 (139)
.++.+++++|+||+|||||+++| .+... ...|.|..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L--~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNAL--LGLQNEILTNDVSN 249 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHH--HCCSSCCCCC----
T ss_pred cCCCEEEEECCCCccHHHHHHHH--hccccccccCCccc
Confidence 46889999999999999999999 55555 66676643
No 116
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.74 E-value=1.4e-05 Score=57.73 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|+|++|||||||.+.|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=1.8e-05 Score=57.99 Aligned_cols=28 Identities=21% Similarity=0.123 Sum_probs=24.2
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+..+++..+.+.||+|+|||||+++|.+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456689999999999999999999953
No 118
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.72 E-value=1.2e-05 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++++|++|+|||||++.|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999964
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.72 E-value=1.2e-05 Score=69.24 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=28.2
Q ss_pred CCCccccCCCE--EEEEeecCCchhHHHHHHHhc
Q psy4669 79 DPSVLMKRPPV--VTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 79 ~~~~~~~r~pv--v~ImG~~g~GKTTLL~~L~~~ 110 (139)
+.++.+++|.+ ++|+|+||+|||||+++|.+.
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 46788999999 999999999999999999764
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.70 E-value=9.4e-06 Score=63.58 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHH
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+++.+++|+|++|||||||++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 678899999999999999999996
No 121
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=1.2e-05 Score=68.66 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=27.6
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I 120 (139)
..++.+++|+||+||||||||++| .+...+..|.|
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~al--lg~l~~~~g~I 198 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAG--LQELNSSERNI 198 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHH--HHHHCCTTSCE
T ss_pred HhcCCeEEEECCCCCCHHHHHHHH--HhhcCCCCCEE
Confidence 357789999999999999999999 44444455654
No 122
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.69 E-value=1.6e-05 Score=61.16 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=25.5
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
....+++.+++|.|++|||||||++.|.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 44567899999999999999999999955
No 123
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.69 E-value=1.2e-05 Score=75.52 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.+.+|.+++|+|+|||||||||++|.+
T Consensus 453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688899999999999999999999999974
No 124
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.68 E-value=8.7e-06 Score=72.02 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=21.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT 121 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It 121 (139)
.++|+|++||||||||++| +|+..+ ..|.|+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I--~Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEAL--SGVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHH--HSCC-------CC
T ss_pred eEEEECCCCChHHHHHHHH--hCCCCCCCCCeEE
Confidence 3999999999999999999 555544 566654
No 125
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.68 E-value=2.3e-05 Score=60.75 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=23.8
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+....++++++|+||+|+|||||++.|.+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 34445889999999999999999999975
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.67 E-value=1.5e-05 Score=62.95 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=26.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.+++|+|++|+|||||++.|.+
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999999999999999999944
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.66 E-value=9.8e-06 Score=67.63 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.0
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-cccE
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGI 120 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-~G~I 120 (139)
++++.+++|+||+|||||||+++|. +...+. .|.|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~--~~~~~~~~g~I 168 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI--DYINQTKSYHI 168 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH--HHHHHHSCCEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH--hhcCcCCCcEE
Confidence 6788999999999999999999994 444443 4554
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.66 E-value=2.4e-05 Score=56.76 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|+|++|||||||.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999964
No 129
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.65 E-value=1.6e-06 Score=68.55 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.6
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.+ .+++|+|||||||||||++|.+
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhc
Confidence 44444 7899999999999999999954
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=2.7e-05 Score=57.80 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=24.7
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.+++|+|++|+|||||++.|.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999999953
No 131
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.64 E-value=1.4e-05 Score=60.08 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+++|+|++|||||||++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999954
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=3.7e-05 Score=57.88 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.1
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
--++++.++.|+|++|+|||||+..|.+....++
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 3578999999999999999999999966434444
No 133
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.63 E-value=6.5e-06 Score=67.78 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.+.++ +++|+|+||+||||||++|..
T Consensus 53 ~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred eEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 467888899 999999999999999999953
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.63 E-value=7e-06 Score=61.89 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+|++|||||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999943
No 135
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.59 E-value=0.00012 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...++++|++|+|||||++++.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997643
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.58 E-value=1.4e-05 Score=66.69 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++.+++|+||+||||||||++|.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 456677999999999999999999943
No 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.58 E-value=3.9e-05 Score=57.32 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.8
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++.+++|+|++|||||||.+.|.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567788999999999999999999965
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.54 E-value=5.6e-05 Score=61.61 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCccccCCCEEEEE
Q psy4669 14 CDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIM 93 (139)
Q Consensus 14 ~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~r~pvv~Im 93 (139)
-+...+.++..+.. .+++. .++. +.....+..|+.++............ ........++........+.-.++|+
T Consensus 97 gN~~~n~~~e~~~~--~~~~~-~i~~-~y~s~~A~lYr~kl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kI~iv 171 (329)
T 3o47_A 97 GNAKFREFLESQED--YDPCW-SLQE-KYNSRAAALFRDKVVALAEGREWSLE-SSPAQNWTPPQPRGLFGKKEMRILMV 171 (329)
T ss_dssp CHHHHHHHHHTCSS--CCTTC-CHHH-HHHSHHHHHHHHHHHHHHTTCCCCSC-C-----CCCCC------CCSEEEEEE
T ss_pred CcHHHHHHHHhcCC--CCCCC-Cccc-cccchHHHHHhhhccccccCCccccc-cccccccCCCCcccccccCcceEEEE
Confidence 34555666665422 33444 5664 47777788777654432211111000 00000000111111222344478999
Q ss_pred eecCCchhHHHHHHHhcCC
Q psy4669 94 GHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 94 G~~g~GKTTLL~~L~~~~v 112 (139)
|+.|+|||||++.+.+..+
T Consensus 172 G~~~vGKSsLl~~l~~~~~ 190 (329)
T 3o47_A 172 GLDAAGKTTILYKLKLGEI 190 (329)
T ss_dssp ESTTSSHHHHHHHTCSSCC
T ss_pred CCCCccHHHHHHHHhCCCC
Confidence 9999999999999965443
No 139
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.53 E-value=5.1e-05 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.1
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|+|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 140
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=6.4e-05 Score=54.17 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
+...++++|++|+|||||+++|.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999653
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.49 E-value=3.3e-05 Score=62.25 Aligned_cols=28 Identities=29% Similarity=0.454 Sum_probs=24.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+.++++|+||+|+|||||+++|.+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4667999999999999999999987544
No 142
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.47 E-value=0.00011 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.9
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..++++|++|+|||||+++|.+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999997643
No 143
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.46 E-value=5.4e-05 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+.+|.||||+||||||++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999986
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.46 E-value=5.9e-05 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.3
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+++++|++|+|||||.+.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999965
No 145
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.45 E-value=9.1e-05 Score=56.60 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=29.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcccccc--cEEEEeeEEEEEe
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG--GITQHIGAFVGFL 131 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G--~Itq~i~ay~V~~ 131 (139)
.+...++++|++|+|||||+++|.+..+...... ++|.+...+.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe
Confidence 3456789999999999999999977555333222 4555555444443
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.44 E-value=8.3e-05 Score=62.08 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc---ccccccEEEEeeEEEEEe
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV---KSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~---~~e~G~Itq~i~ay~V~~ 131 (139)
....++++||+|||||||+++|.+.... .....+||+++++....+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~ 55 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEI 55 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccc
Confidence 3457899999999999999999643221 122357888877554433
No 147
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.42 E-value=7e-05 Score=62.74 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.6
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+..+++++|+||||+||||||++|..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4456789999999999999999999964
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.40 E-value=7e-05 Score=59.64 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++..+++ +.+.||+|+|||||+++|.+
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 45566666 99999999999999999965
No 149
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.40 E-value=6.2e-05 Score=60.89 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=23.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.++.+.++ +++|+|+||+||||||++|.
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 34556555 99999999999999999996
No 150
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.40 E-value=0.00012 Score=59.86 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=29.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT 121 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It 121 (139)
.-|.++++|++|+|||||+++|.+..+.+...|.+|
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 345999999999999999999977667777777665
No 151
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=7.6e-05 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+.++|++|+|||||+++|.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999954
No 152
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.40 E-value=9e-05 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.2
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+++|+|++||||||+.+.|++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHCC
Confidence 479999999999999999997644
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.38 E-value=7.9e-05 Score=61.61 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++-+++|+|++|||||||+++|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445999999999999999999954
No 154
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.38 E-value=0.00012 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.5
Q ss_pred CEEEEEeecCCchhHHHHHHHhc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
..++++|++|+|||||++++.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999653
No 155
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.38 E-value=6.1e-05 Score=63.05 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.+.++ +++|+||||+||||||++|..
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 456777777 999999999999999999964
No 156
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.37 E-value=6.4e-05 Score=62.34 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.++.++.+ +++|+||||+||||||++|.
T Consensus 17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34566666 88999999999999999986
No 157
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.37 E-value=0.00013 Score=57.16 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
...++++|++|+|||||+++|.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999976443
No 158
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.37 E-value=0.00011 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=24.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++.++.|.|++|+|||||+..|..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999999954
No 159
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.36 E-value=0.00033 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.0
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
--++++|+.|+|||||++.+.+.....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~ 41 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDN 41 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 458999999999999999997644433
No 160
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=0.00011 Score=54.24 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=24.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+...++++++.++|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456678899999999999999999999653
No 161
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.36 E-value=0.00017 Score=51.50 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~ 131 (139)
.--++++|+.|+|||||+++|.+..+.......+...+....+.+
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~ 51 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL 51 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe
Confidence 345899999999999999999876544333333333344444444
No 162
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.36 E-value=0.0002 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.3
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
-++++|+.|+|||||++.+.+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~ 29 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFN 29 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999765443
No 163
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.35 E-value=0.0004 Score=49.68 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
+..-++++|+.|+|||||++.+.+......
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~ 38 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDD 38 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 345789999999999999999976544433
No 164
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.34 E-value=4.4e-05 Score=65.09 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=28.0
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.++.++.++|+|++|+||||||++|.+
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 4677889999999999999999999999954
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.34 E-value=0.00011 Score=61.25 Aligned_cols=44 Identities=36% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC--cc-cccccEEEEeeEEEEE
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV--VK-SEFGGITQHIGAFVGF 130 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v--~~-~e~G~Itq~i~ay~V~ 130 (139)
...++++||+|||||||+++|.+... .. ....+||+++++....
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~ 56 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAE 56 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeee
Confidence 35689999999999999999964322 11 2235778877754443
No 166
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=0.0001 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++++|++||||||+.+.|.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999965
No 167
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.34 E-value=0.00025 Score=50.15 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+..-++++|+.|+|||||+++|.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999965433
No 168
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.33 E-value=0.00011 Score=63.27 Aligned_cols=47 Identities=38% Similarity=0.447 Sum_probs=27.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC-------CcccccccEEEEeeEEEEEee
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS-------VVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~-------v~~~e~G~Itq~i~ay~V~~~ 132 (139)
+...++++||+|||||||+++|.+.. .......++|.+++++.+.+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 71 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE 71 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC
Confidence 45689999999999999999997644 122334578888887666553
No 169
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.32 E-value=0.00013 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=24.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.++.|+|++|+|||||+..|.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999999864
No 170
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.31 E-value=0.00013 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred CEEEEEeecCCchhHHHHHHHhc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+++|+|++||||||+.+.|++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 37899999999999999999763
No 171
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.31 E-value=5.2e-05 Score=70.64 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.8
Q ss_pred CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.++.++++++++|+||||+||||||+.+..
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 345677888999999999999999999999853
No 172
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.30 E-value=0.00012 Score=56.38 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++..+++ +.+.||+|+|||||+++|.+
T Consensus 45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 45 GARIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 4455566 99999999999999999965
No 173
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.29 E-value=0.00026 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+-++++|+.|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997654
No 174
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.28 E-value=8.1e-05 Score=68.24 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=26.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++. +++++++|+||||+||||||+.|.+
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 345566 7899999999999999999999965
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.26 E-value=0.00012 Score=65.26 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=23.9
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+...+++.++|+||+|||||||+++|.+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHH
Confidence 3457889999999999999999999974
No 176
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.25 E-value=0.00045 Score=48.15 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
-++++|+.|+|||||++.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999976443
No 177
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.25 E-value=0.00034 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4589999999999999999976443
No 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.25 E-value=0.00018 Score=59.41 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.9
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF 117 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~ 117 (139)
+..++++.++.|.|++|+|||||+..|.+....++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 4678999999999999999999999996543224444
No 179
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.25 E-value=0.00046 Score=48.73 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+..-++++|+.|+|||||++++.+.....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~ 36 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS 36 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc
Confidence 34578999999999999999997654443
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.24 E-value=0.00013 Score=61.49 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.+++|.||+|+|||||+++|.+
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999999999965
No 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.24 E-value=0.00037 Score=50.79 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
..-++++|+.|+|||||++.+.+..+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~ 35 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN 35 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 3468999999999999999997755443
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.00016 Score=53.81 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+++|+|++|+|||||.+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999964
No 183
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.23 E-value=0.00028 Score=59.78 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=26.4
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+.++..++|+|++|+|||||+++|.+..+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 567889999999999999999999977443
No 184
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.00019 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++|+|++|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999999864
No 185
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.21 E-value=0.0005 Score=49.59 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
..-++++|+.|+|||||+++|.+.....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~ 43 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTE 43 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 4468999999999999999997644433
No 186
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.21 E-value=0.00016 Score=56.63 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.5
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.++++ +.|.||+|+|||||+++|.+
T Consensus 69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 69 GARIPKG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp TCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence 4455555 89999999999999999965
No 187
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.21 E-value=0.00019 Score=51.12 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.9
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+|++|+||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.20 E-value=0.00046 Score=54.36 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=26.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~ 123 (139)
...|.++|+|+.++|||||+++|.+..+.+...|-.|..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~ 60 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR 60 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeee
Confidence 345789999999999999999997766655444444433
No 189
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.20 E-value=9.6e-05 Score=68.92 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+.++...++++++|+||||+||||||+.+.
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3566778889999999999999999999983
No 190
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.20 E-value=9.5e-05 Score=58.81 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCCccccC---CCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKR---PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r---~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.+.+ +++++|+|++||||||+.+.|.+
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35677777 99999999999999999999964
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.20 E-value=0.00017 Score=58.27 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|++|||||||.+.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999854
No 192
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.19 E-value=0.00035 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=21.1
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3578999999999999999976443
No 193
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.19 E-value=0.00051 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.4
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.-++++|+.|+|||||++.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4689999999999999999976443
No 194
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.18 E-value=0.00017 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+++|.|+||+||||++++|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999986
No 195
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.18 E-value=0.0002 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.6
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+++++.|++||||||+.+.|...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLKERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHCC
Confidence 689999999999999999994333
No 196
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.18 E-value=0.00025 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
-++++|+.|+|||||++.+.+..+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~ 27 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVR 27 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCc
Confidence 4789999999999999999765443
No 197
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.00025 Score=60.12 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
--++++.++.|+|++|+|||||+..|.-....+...|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 4589999999999999999999996643455555444
No 198
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.17 E-value=0.00017 Score=58.78 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.+.+++|+||||+||||||++|.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999999984
No 199
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.16 E-value=0.00026 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
..-++++|+.|+|||||++.+.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcC
Confidence 45689999999999999999976443
No 200
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.16 E-value=0.00016 Score=63.69 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=24.3
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.+++++|+||||||||+++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHH
Confidence 456899999999999999999999954
No 201
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.16 E-value=0.00046 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
++..++++|++|+|||||+++|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999764
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.15 E-value=0.0002 Score=59.02 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++++|+|+.|+|||||+++|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5589999999999999999999964
No 203
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.15 E-value=0.00028 Score=55.56 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
|.++++|+.|+|||||+++|.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 578999999999999999997654
No 204
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.15 E-value=0.00049 Score=48.51 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+..-++++|+.|+|||||++.+.+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 41 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM 41 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3456899999999999999999865543
No 205
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.15 E-value=0.00045 Score=53.24 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+...++|+|+.|+|||||++.|.+...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~ 47 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQA 47 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456799999999999999999976543
No 206
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00025 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.5
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++.++.++|++|+||||+.+.|..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445788999999999999999999854
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.00028 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=21.0
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++.++|++|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 208
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.13 E-value=0.00027 Score=53.08 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
++.+++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~lg 28 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADLG 28 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHcC
Confidence 45689999999999999999997643
No 209
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.12 E-value=0.00057 Score=49.52 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=23.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
.+..-++++|+.|+|||||++.|.+..+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~ 51 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFS 51 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 34457899999999999999999775443
No 210
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.12 E-value=0.00082 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
-++++|+.|+|||||++.+.+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~ 29 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFI 29 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCc
Confidence 5899999999999999999764433
No 211
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.11 E-value=0.00029 Score=52.24 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=31.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC-C-cccccccEEEEeeEEEEE
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS-V-VKSEFGGITQHIGAFVGF 130 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~-v-~~~e~G~Itq~i~ay~V~ 130 (139)
.+.+.++++|+.|+|||||+++|.+.. + .....-+.|+++..+.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~ 74 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG 74 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec
Confidence 346789999999999999999996643 2 112222445565555554
No 212
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.11 E-value=0.00012 Score=68.96 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
.++++.++++.+++|+|+||+|||||++.|
T Consensus 659 k~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 659 RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 467889999999999999999999999985
No 213
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.00084 Score=46.88 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4589999999999999999976543
No 214
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.10 E-value=0.00055 Score=49.43 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=22.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+.+.++++|+.|+|||||++.|.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999997643
No 215
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.10 E-value=0.0008 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.6
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
--++++|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999997643
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00032 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.++.+++|+|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999653
No 217
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.08 E-value=0.00053 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
-++++|+.|+|||||++.+.+.....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~~ 30 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFVD 30 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCcc
Confidence 48899999999999999997654433
No 218
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.08 E-value=0.00049 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.8
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
-++++|+.|+|||||++.+.+..+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~~~ 31 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEFVE 31 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCccCC
Confidence 57899999999999999998755433
No 219
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.07 E-value=0.00058 Score=48.48 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.8
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
--++++|+.|+|||||++.+.+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~ 38 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFV 38 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 46899999999999999999765443
No 220
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.07 E-value=0.00019 Score=58.66 Aligned_cols=30 Identities=30% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++...++.+++++|++|+||||++..|++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 344567889999999999999999999954
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00033 Score=50.90 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.++.++|++|+||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999864
No 222
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.05 E-value=0.00027 Score=57.06 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.8
Q ss_pred EEEeecCCchhHHHHHHHhc
Q psy4669 91 TIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 91 ~ImG~~g~GKTTLL~~L~~~ 110 (139)
+++|++|+|||||+++|.+.
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 99999999999999998554
No 223
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.05 E-value=0.0012 Score=47.18 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...+.++++|+.|+|||||++.+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 456789999999999999999997644
No 224
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00095 Score=47.90 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+..-++++|+.|+|||||++.+.+..+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3457899999999999999999765433
No 225
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.05 E-value=0.00011 Score=68.93 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
.++++.++++.+++|+|+||+|||||++.|
T Consensus 641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp CSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred ccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 456789999999999999999999999985
No 226
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.04 E-value=0.00053 Score=51.68 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=23.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++.+-++++|+.|+|||||++.+.+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45678999999999999999999664443
No 227
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.04 E-value=0.00018 Score=65.65 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+||||+||||||+.|.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 99999999999999999999964
No 228
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.03 E-value=0.00072 Score=49.59 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
..-++++|+.|+|||||++.|.+..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT 34 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356899999999999999999764443
No 229
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.03 E-value=0.00029 Score=57.06 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.+.||+|+|||||+++|.+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 37899999999999999999965
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.02 E-value=0.00039 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|.|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
No 231
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.02 E-value=0.00037 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++++.++|++|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999999963
No 232
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.01 E-value=0.00036 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.++++++|+.|+|||||++.|..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999999999864
No 233
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.01 E-value=0.00076 Score=49.35 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+..-++++|+.|+|||||++.+.+..+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4556799999999999999999976544
No 234
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.01 E-value=0.00048 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..++++|+|++|+|||||+++|.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999996644
No 235
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.99 E-value=0.0011 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+.--++++|+.|+|||||++++.+..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999965443
No 236
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.99 E-value=0.00051 Score=53.47 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+.--++++|++|+|||||+++|.+..+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~ 48 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFF 48 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 34568999999999999999998765544
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.99 E-value=0.00039 Score=52.31 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.5
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...+++.++++.|++|+||||+.+.|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999999999999999853
No 238
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=0.0004 Score=59.24 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEeecCCchhHHHHHHHhcC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~ 111 (139)
++|+|++|+|||||+++|.+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 3999999999999999995543
No 239
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.98 E-value=0.00076 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
-++++|+.|+|||||++++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999976443
No 240
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.98 E-value=0.0008 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+..-++++|+.|+|||||++.+.+..+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 445789999999999999999976443
No 241
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.98 E-value=0.0012 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
.--++++|+.|+|||||++.+.+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~ 44 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV 44 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 345799999999999999999764433
No 242
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.97 E-value=0.00079 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++|+.|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999954
No 243
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.97 E-value=0.00024 Score=63.20 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
|.+.++|+||+|||||||.++|.
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL 23 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLL 23 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999986
No 244
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.96 E-value=0.0012 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.-++++|+.|+|||||++.+.+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999999999999999976443
No 245
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.96 E-value=0.00027 Score=63.38 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.8
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+.+.++|+||+|||||||.++|.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHH
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHH
Confidence 4678899999999999999999985
No 246
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.96 E-value=0.00085 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
...++++|++|+|||||+++|.+...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999999999999999987553
No 247
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.0013 Score=49.16 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=22.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+..-++++|+.|+|||||++.+.+..+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3445789999999999999999976443
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.96 E-value=0.00039 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.|+||||+|||||++.|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999974
No 249
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.95 E-value=0.0014 Score=46.69 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+..-++++|+.|+|||||++.+.+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999997543
No 250
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.95 E-value=0.00031 Score=58.57 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.0
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY 132 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~ 132 (139)
.++++||+|||||||+++|. .-++|.+++.+.+...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~ 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC
Confidence 89999999999999999993 4467777777666543
No 251
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.95 E-value=0.00052 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...++++|+.|+|||||+++|.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997644
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.95 E-value=0.00056 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.95 E-value=0.00052 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999975
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.00044 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.4
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+++|.|++||||||+++.|..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 44889999999999999999999964
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00047 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.9
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++|.|++||||||+.+.|.+
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999975
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.94 E-value=0.0005 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.0
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+..++.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999999975
No 257
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.94 E-value=0.00045 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++.|+|++|+|||||+..|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988753
No 258
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00055 Score=49.46 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+.+.++++|+.|+|||||+++|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997643
No 259
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00059 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.94 E-value=0.00037 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++++|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999963
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00035 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++|.|++|||||||.+.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 262
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.94 E-value=0.00054 Score=59.02 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=25.6
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++.+++|+|++|+|||||++.+.+
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3679999999999999999999999965
No 263
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.94 E-value=0.0012 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
..-++++|+.|+|||||++.+.+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999976443
No 264
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.93 E-value=0.0011 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.--++++|+.|+|||||++.+.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45689999999999999999976443
No 265
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.93 E-value=0.0015 Score=55.36 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHH
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.....++++||+|||||||++.|.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll 38 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIM 38 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHH
Confidence 445688999999999999999994
No 266
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.93 E-value=0.00028 Score=66.30 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCCccccC-------CCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKR-------PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r-------~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++...+ +.+++|+||||+||||||+.+ +
T Consensus 774 di~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 774 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp EEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred eeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 44555655 899999999999999999998 5
No 267
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.92 E-value=0.00028 Score=61.86 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.7
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
...|.+.++|+||+|||||||.++|.
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHH
T ss_pred cccccceEEEEeCCCCCHHHHHHHHH
Confidence 46788999999999999999999985
No 268
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.92 E-value=0.00029 Score=57.80 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=27.4
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++...++.+++++|++|+||||++..|++
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667778899999999999999999999954
No 269
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.91 E-value=0.0011 Score=47.27 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.2
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
-++++|+.|+|||||++.|.+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~~~~ 32 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHFVDE 32 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 578999999999999999986554433
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00056 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++.++|++||||||+-+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999964
No 271
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.90 E-value=0.00084 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+.--++++|+.|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568999999999999999996543
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00066 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|+.|+||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.88 E-value=0.00054 Score=49.77 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++|++|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999954
No 274
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.87 E-value=0.00092 Score=47.40 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
..-++++|+.|+|||||++.+.+..+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~ 45 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVE 45 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC
Confidence 3568999999999999999998655433
No 275
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.87 E-value=0.00056 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
...++++|+.|+|||||+++|.+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 35689999999999999999976443
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0013 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEeecCCchhHHHHHHHhc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~ 110 (139)
-++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 277
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.86 E-value=0.00083 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.--++++|+.|+|||||++.+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999976444
No 278
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.86 E-value=0.00071 Score=48.74 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+.--++++|+.|+|||||++.|.+.....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~ 48 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD 48 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc
Confidence 34578999999999999999998654443
No 279
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.85 E-value=0.00059 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+...++++||+|||||||++.|.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHH
Confidence 34579999999999999999985
No 280
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.00077 Score=55.14 Aligned_cols=26 Identities=42% Similarity=0.626 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+...++++|++|+|||||++.|.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999653
No 281
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.83 E-value=0.00065 Score=55.52 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.0
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++...++++++++|++|+|||||++.|.+
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34557889999999999999999999953
No 282
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.83 E-value=0.00098 Score=48.37 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+..-++++|+.|+|||||++.+.+..+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 41 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVE 41 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 34568999999999999999998655433
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.83 E-value=0.00061 Score=48.74 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999965
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00072 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.1
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHH
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
..-++++.++.|.|++|+|||||+..+
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999999996555
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00064 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|.|+.|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
No 286
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.0017 Score=47.61 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=24.2
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
...+..-++++|+.|+|||||++++.+..+..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~ 51 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE 51 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence 33556679999999999999999998754443
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.82 E-value=0.00073 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++++|++|+||||++..|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999953
No 288
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0009 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHHhc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.-++++|+.|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999653
No 289
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.81 E-value=0.001 Score=48.98 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+...++++|+.|+|||||++.+.+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3456799999999999999999976443
No 290
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.81 E-value=0.001 Score=51.70 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=24.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+.+-++++|..++|||||+++|.+..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4578999999999999999999876554
No 291
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.80 E-value=0.00019 Score=66.35 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHH-H
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDT-L 107 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~-L 107 (139)
+.++.++++.+++|+|+||+|||||++. |
T Consensus 515 ~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L 544 (842)
T 2vf7_A 515 NLDVRFPLGVMTSVTGVSGSGKSTLVSQAL 544 (842)
T ss_dssp EEEEEEESSSEEEEECCTTSSHHHHCCCCC
T ss_pred cceEEEcCCCEEEEEcCCCcCHHHHHHHHH
Confidence 4578899999999999999999999996 5
No 292
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.80 E-value=0.00042 Score=64.59 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLL 104 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL 104 (139)
.+.++.++.+.+++|+|+||||||||+
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhH
Confidence 457889999999999999999999997
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.79 E-value=0.0007 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++|+|++|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 294
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.79 E-value=0.0012 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.++++|+.|+|||||++.+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999999999999999865
No 295
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.79 E-value=0.00047 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=9.8
Q ss_pred CEEEEEeecCCchhHHHHHHHhc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
--++++|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999653
No 296
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.0012 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEeecCCchhHHHHHHHhcCC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~v 112 (139)
++|+|++|+|||||+++|.+.+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999855443
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.0006 Score=49.23 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=17.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.++.++|+.||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999964
No 298
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.76 E-value=0.00071 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.8
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+++|.|+.||||||+.+.|+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999964
No 299
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.002 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.--++++|+.|+|||||++.+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997644
No 300
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.00093 Score=49.33 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++.+++|+|+.||||||+.+.|..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667999999999999999998863
No 301
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.00088 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.3
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|.|++||||||+.+.|++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 302
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.74 E-value=0.0018 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.0
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3589999999999999999976443
No 303
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.002 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.--++++|+.|+|||||++.+.+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 34689999999999999999976544
No 304
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.72 E-value=0.0016 Score=48.09 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+..-++++|+.|+|||||++.+.+..+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 4445789999999999999999976443
No 305
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.00088 Score=47.72 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..-++++|+.|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999999953
No 306
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.71 E-value=0.0012 Score=51.87 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred EEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSE 116 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e 116 (139)
-++++|++|+|||||++.|.+.+....+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~ 37 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPE 37 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 4889999999999999999765555433
No 307
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.71 E-value=0.00081 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhc
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.-++++|+.|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999999753
No 308
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.00095 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|+|++||||||+.+.|..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999963
No 309
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.69 E-value=0.0011 Score=49.02 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+.+.++++|+.|+|||||+++|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997643
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.67 E-value=0.00085 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+|++||||||+.+.|+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 311
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.67 E-value=0.00081 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.7
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.++.++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677999999999999999999964
No 312
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.67 E-value=0.0019 Score=46.85 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+.--++++|+.|+|||||++.+.+..+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~ 50 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPT 50 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 34468999999999999999998755433
No 313
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.66 E-value=0.00099 Score=46.69 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+..-++++|+.|+|||||++.+.+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999997643
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00097 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.++++.|+.||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 315
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.66 E-value=0.0021 Score=46.99 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.1
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...+..-++++|+.|+|||||++.+.+..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34556789999999999999999997644
No 316
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.65 E-value=0.001 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 317
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.64 E-value=0.00049 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.6
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
--++++|+.|+|||||++.+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 458999999999999999997543
No 318
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.63 E-value=0.0017 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+++|+|++||||||+.+.|+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999964
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.62 E-value=0.00092 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+|++|+|||||-+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999864
No 320
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.00058 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.|.+.+.||+|+|||||+++|.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344499999999999999999955
No 321
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.61 E-value=0.00055 Score=59.56 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=22.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++++++||+|+|||||+++|.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999964
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.60 E-value=0.00073 Score=54.47 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++. ++.+++++|++|+||||++..|.+
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34554 888999999999999999999954
No 323
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.60 E-value=0.001 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
+.+++|.|++|+||||+|++|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999986
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.60 E-value=0.0014 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|+.||||||+.+.|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999963
No 325
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.60 E-value=0.0011 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++|+.|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999954
No 326
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.60 E-value=0.0017 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
+.--++++|+.|+|||||++++.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999997644
No 327
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.58 E-value=0.0032 Score=45.61 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=23.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
++.--++++|+.|+|||||++.+.+..+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 48 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN 48 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 44556899999999999999999764443
No 328
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.002 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
..-++++|+.|+|||||++.+.+..+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999976443
No 329
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.57 E-value=0.0025 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.2
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578999999999999999976443
No 330
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.56 E-value=0.0015 Score=47.08 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=21.7
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...+..-++++|+.|+|||||++.+.+..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33455678999999999999999997543
No 331
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.56 E-value=0.00082 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=18.7
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999864
No 332
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.003 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..-++++|+.|+|||||++++.+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999997643
No 333
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.55 E-value=0.0015 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=21.5
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...++++|++|+|||||+++|.+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568999999999999999997643
No 334
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.55 E-value=0.0021 Score=46.26 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.7
Q ss_pred ccccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
......+-++++|+.|+|||||++.+.+..
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344566789999999999999999996543
No 335
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.54 E-value=0.0012 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEeecCCchhHHHHHHHhcC
Q psy4669 90 VTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~~~ 111 (139)
++++|+.|+|||||++.+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997533
No 336
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.54 E-value=0.0012 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++.+.|++|+|||||.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999954
No 337
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.53 E-value=0.0015 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.5
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999954
No 338
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.52 E-value=0.0008 Score=59.41 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.5
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
...++|+||+|||||||+++|.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHH
Confidence 3469999999999999999994
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.52 E-value=0.0016 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++++.|+.||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 340
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.51 E-value=0.0023 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
...-++|+|++|+|||||+++|.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999654
No 341
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0023 Score=46.54 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+.--++++|+.|+|||||++.+.+..+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~ 54 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI 54 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3456899999999999999999765443
No 342
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0015 Score=48.22 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.0
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.+...+..-++++|+.|+|||||++.+.+...
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred ccccccCcEEEEECcCCCCHHHHHHHHhcCCC
Confidence 33444556799999999999999999976443
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.50 E-value=0.0013 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+|++||||||+-+.|+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.49 E-value=0.0017 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++++|+.||||||+-+.|+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 345
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.49 E-value=0.0016 Score=47.23 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+..-++++|+.|+|||||++.+.+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999954
No 346
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.49 E-value=0.00055 Score=58.83 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+..+ +++|+|+||+||||||++|..
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 45566655 999999999999999999953
No 347
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.48 E-value=0.0015 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 348
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0017 Score=47.16 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=22.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...--++++|+.|+|||||++.+.+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 344568999999999999999997643
No 349
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.46 E-value=0.0012 Score=53.21 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+...++|+|++|+|||||+++|.+..+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 4457999999999999999999875543
No 350
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.46 E-value=0.0018 Score=47.37 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...++++|+.|+|||||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999997633
No 351
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=47.42 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
..+..-++++|+.|+|||||++.+.+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345667999999999999999999543
No 352
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.45 E-value=0.0013 Score=54.78 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=19.4
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++||+|||||||+++|.+
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~ 25 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITK 25 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.45 E-value=0.0015 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.145 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
--++++|+.|+|||||++.+.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999965
No 354
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.43 E-value=0.00088 Score=48.56 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=6.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+.--++++|+.|+|||||++.+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34457899999999999999999654
No 355
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.43 E-value=0.0034 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.7
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.+.++|+||+|||||||++.|..
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999999954
No 356
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.42 E-value=0.0015 Score=52.45 Aligned_cols=29 Identities=38% Similarity=0.503 Sum_probs=24.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+....|+|+|+.|+|||||+++|.+..+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 55678999999999999999999875543
No 357
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.41 E-value=0.0022 Score=54.59 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=23.8
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+..+..++|+|++|+|||||+++|.+..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45667789999999999999999997654
No 358
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.40 E-value=0.0041 Score=44.50 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
++..-++++|+.|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999996533
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.40 E-value=0.0022 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.3
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+++++|+.|+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45556999999999999999999864
No 360
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.39 E-value=0.0054 Score=44.55 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.--++++|+.|+|||||++.+.+..+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 34689999999999999999976443
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.39 E-value=0.0018 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+++|.|++||||||+-+.|+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999965
No 362
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0017 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.9
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+|+.||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 363
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.37 E-value=0.0014 Score=54.42 Aligned_cols=23 Identities=52% Similarity=0.667 Sum_probs=20.6
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++++||+|||||||+++|.+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Confidence 35789999999999999999965
No 364
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.37 E-value=0.0043 Score=45.84 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
.+.--++++|+.|+|||||++.+.+..+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~ 57 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG 57 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCC
Confidence 445578999999999999999997644443
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.36 E-value=0.0021 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 366
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.33 E-value=0.0037 Score=45.44 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..+..-++++|+.|+|||||++.+.+..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3455678999999999999999997543
No 367
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.33 E-value=0.0064 Score=45.31 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV 113 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~ 113 (139)
+.--++++|+.|+|||||++.+.+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 54 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP 54 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3456899999999999999999875443
No 368
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.32 E-value=0.0019 Score=57.44 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=17.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.++|+||+|||||||+++|..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.32 E-value=0.0026 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.+.|.|+.|+|||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999854
No 370
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.32 E-value=0.0022 Score=53.35 Aligned_cols=24 Identities=42% Similarity=0.738 Sum_probs=21.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+...++++||+|||||||+++|.+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446789999999999999999954
No 371
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.003 Score=45.66 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+.--++++|+.|+|||||++.+.+..+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345789999999999999999976443
No 372
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.28 E-value=0.0026 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.4
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
..+.+.++|+||.|||||||++.|.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll 33 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERIL 33 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH
Confidence 3567889999999999999999996
No 373
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.28 E-value=0.0023 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
..-++++|+.|+|||||++.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 34689999999999999999976443
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.003 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.|.|+.|+|||||++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999864
No 375
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0025 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..-++++|+.|+|||||++.+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999964
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.27 E-value=0.0027 Score=48.37 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=22.3
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.....++..++++|+.|+||||+.+.|..
T Consensus 10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33455678999999999999999999864
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.27 E-value=0.0015 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCEEEEEeecCCchhHHHHHHH
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
..-++++|..|+|||||++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999994
No 378
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0024 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+.|.|+.|+|||||++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999954
No 379
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.0023 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++.+.|+.|+||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999864
No 380
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.26 E-value=0.0025 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+..-++++|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999954
No 381
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.25 E-value=0.0028 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.5
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+-+.+.||+|+|||||.++|.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3488999999999999999965
No 382
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.23 E-value=0.0031 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.3
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.--++++|+.|+|||||++.+.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999997533
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.19 E-value=0.0029 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++|+|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.0035 Score=52.64 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=24.5
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.-+++.++.++|++||||||+.+.|..
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456788999999999999999999853
No 385
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.17 E-value=0.0091 Score=44.57 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~ 114 (139)
+.--++++|+.|+|||||++.+.+..+..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~ 54 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE 54 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 34568999999999999999997654433
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0028 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++|+|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.15 E-value=0.0027 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.3
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
--++++|+.|+|||||++.+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999886533
No 388
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.15 E-value=0.0022 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++||+|||||||+++|.+
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHh
Confidence 4689999999999999999964
No 389
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0041 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.2
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
--++++|+.|+|||||++.+.+..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999999999999999976443
No 390
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.14 E-value=0.0026 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.4
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++.++.|.|++|+|||||+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998853
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.14 E-value=0.0018 Score=56.71 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF 117 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~ 117 (139)
.+..+..+..+.++||+|+|||||+++|.+ ......
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~ 88 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAE--LLPTET 88 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHH--TSCCSS
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhc--cCCccc
Confidence 345678889999999999999999999954 444443
No 392
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.13 E-value=0.005 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
...++++|++|+|||||++.|.+..+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35789999999999999999977554
No 393
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.13 E-value=0.00049 Score=50.49 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.--++++|+.|+|||||+++|.+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3445789999999999999999954
No 394
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.13 E-value=0.0031 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|+|++|+||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999853
No 395
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.11 E-value=0.0019 Score=57.50 Aligned_cols=25 Identities=48% Similarity=0.655 Sum_probs=20.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.++|+||+|||||||+++|..
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999964
No 396
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.11 E-value=0.0031 Score=51.44 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE 116 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e 116 (139)
+.|.++++|..++|||||+++|.+..+.+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~ 60 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRG 60 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 3478999999999999999999765554433
No 397
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.10 E-value=0.003 Score=54.95 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++..+++ +.+.||+|+|||||+++|.+
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence 44555666 99999999999999999965
No 398
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.10 E-value=0.0036 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.|.|+.|+|||||++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
No 399
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.10 E-value=0.0024 Score=53.75 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.3
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++++||+|||||||+++|..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999999964
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.09 E-value=0.0035 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.+.|.|+.|+|||||++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456779999999999999999864
No 401
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.0035 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.7
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+++|.|..|+||||+.+.|..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.08 E-value=0.0028 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEeecCCchhHHHHHHHhcCC
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
-++++|+.|+|||||++.+.+..+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 588999999999999999976443
No 403
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.06 E-value=0.0036 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.|.+.|.|+.|+|||||++.+.+
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999954
No 404
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.05 E-value=0.004 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.8
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...+..+.+.||+|+|||||.++|.+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHH
Confidence 45677899999999999999999965
No 405
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.05 E-value=0.0029 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+...++|+||+|||||||++.|..
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHh
Confidence 35668899999999999999999965
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.04 E-value=0.0039 Score=45.62 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.--++++|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4456799999999999999999954
No 407
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.03 E-value=0.0056 Score=50.01 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=28.4
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
-++++.++.|.|++|+|||||+..+......+.+.|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g 153 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 153 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 578999999999999999999998865433443333
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.03 E-value=0.0035 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...+++|+|.+||||||+-+.|+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.02 E-value=0.0045 Score=46.66 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++..++++|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 410
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.02 E-value=0.0033 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.8
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++++||+|||||||+++|.+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~ 29 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIY 29 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.01 E-value=0.0037 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++|+|++|+||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.00 E-value=0.0036 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 413
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.00 E-value=0.0067 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.5
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
--++++|+.|+|||||+++|.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999964
No 414
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.99 E-value=0.0025 Score=55.60 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.5
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
..+.+.++|+||+|+|||||+++|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHH
Confidence 4567899999999999999999994
No 415
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.98 E-value=0.0027 Score=54.15 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.3
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
--++++||+|+|||||+++|..
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~ 55 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLY 55 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999854
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.96 E-value=0.0045 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.3
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.+.|.|++|+|||||+++|..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999854
No 417
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.94 E-value=0.0061 Score=53.32 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.4
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
....+.++|+|+.|+|||||+++|.+..+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45689999999999999999999987554
No 418
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.92 E-value=0.0064 Score=51.00 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
...-++++|++|+|||||+++|.+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44679999999999999999997644
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.92 E-value=0.004 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 420
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.89 E-value=0.005 Score=47.93 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+..+.+.||+|+|||||.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3467899999999999999999965
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.89 E-value=0.0039 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.++++|+|+.|+|||||++.|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999853
No 422
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.0038 Score=50.07 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEeecCCchhHHHHHHHh
Q psy4669 90 VTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.||+|+||||+++++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999965
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.85 E-value=0.0052 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.2
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-.+++|+|..||||||+-+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 424
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.83 E-value=0.0045 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+.|.++|+|++|+|||||+++|.+.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999999653
No 425
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0042 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.-.++++||+|+|||||+++|.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~ 189 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLY 189 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHH
Confidence 3345789999999999999999964
No 426
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.80 E-value=0.0055 Score=47.73 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.4
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+....+++|+.|+||.||||+|.-+.|..
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44567889999999999999999888854
No 427
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.79 E-value=0.0085 Score=48.32 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=27.9
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G 118 (139)
-++++.++.|.|++|+|||||...+......+.+.|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g 138 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC
Confidence 578999999999999999999988865333333333
No 428
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.0043 Score=57.86 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCCccccCCCEEEEEeecCCchhHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTL 103 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTL 103 (139)
++++..+||+.+|+|.|.||||||||
T Consensus 15 kni~~~ip~~~l~v~tG~SGSGKSsL 40 (916)
T 3pih_A 15 KNITVRIPKNRLVVITGVSGSGKSSL 40 (916)
T ss_dssp CSBCCEEETTSEEEEEESTTSSSHHH
T ss_pred CcceeccCCCcEEEEECCCCCcHHHH
Confidence 46789999999999999999999999
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.76 E-value=0.0066 Score=44.30 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=20.6
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+..-++++|..|+|||||++.+.+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34556799999999999999998865
No 430
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.76 E-value=0.0032 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.696 Sum_probs=21.9
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
+.++|+|+.++|||||++.|.+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 7899999999999999999976443
No 431
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.0061 Score=49.30 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=24.2
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++..+ +.+++++|++|+||||++..|+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 445544 88999999999999999999963
No 432
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.73 E-value=0.0052 Score=48.76 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=20.9
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.|.|++|+|||||+++|.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999999954
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.73 E-value=0.0032 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.1
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
...++.+++|.|..|+||||+.+.|..
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999854
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.73 E-value=0.0067 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.-+.+.||.|+|||||.+++.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4566799999999999999999964
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.70 E-value=0.0044 Score=52.99 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.++. ++.+++++|++|+||||++..|+.
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444 788999999999999999999954
No 436
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.69 E-value=0.0086 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.6
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
|.++|+|..+.|||||++.|.+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999997644
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0056 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++++|+||+|+|||||...|+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHH
Confidence 467899999999999999999964
No 438
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.68 E-value=0.0038 Score=57.70 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCCCccccCCCEEEEEeecCCchhHHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTLL 104 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL 104 (139)
++++..+|++.+|+|.|.||||||||.
T Consensus 27 kni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 27 KDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp CSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 467889999999999999999999994
No 439
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.67 E-value=0.0065 Score=50.18 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
-++++.++.|.|++|+|||||+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999977774
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.006 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.1
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+..+.+.|++|||||||.++|.+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 457788999999999999999999954
No 441
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.63 E-value=0.0023 Score=55.05 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.+--++|+|+.|+|||||+++|.+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4455999999999999999999763
No 442
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.62 E-value=0.0079 Score=45.53 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++-+.+.|+.|+|||+|.+++.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456688999999999999999964
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.62 E-value=0.0072 Score=45.21 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.8
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 444
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.60 E-value=0.0069 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.+.|+.|+|||||++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999854
No 445
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.59 E-value=0.0021 Score=54.76 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=26.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEEe
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGFL 131 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~~ 131 (139)
.....++|+|++|+|||||+++|.+..+. ....-++|.+...+.+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~ 79 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL 79 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE
Confidence 34567999999999999999999654432 123334555555555544
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.58 E-value=0.007 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 447
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.57 E-value=0.006 Score=52.55 Aligned_cols=45 Identities=27% Similarity=0.232 Sum_probs=22.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEE
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGF 130 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~ 130 (139)
.+--++|+|+.++|||||+++|.+.... ....-+.|.++....+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~ 277 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI 277 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE
Confidence 3445999999999999999999654321 22333445554433333
No 448
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.56 E-value=0.0055 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.0
Q ss_pred cccCCCEEEEEeecCCchhHHHHHH
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L 107 (139)
.+..+.++.+.|++||||||++..+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 3557899999999999999976654
No 449
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.55 E-value=0.0062 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEeecCCchhHHHHHHHh
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++|..|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999964
No 450
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.53 E-value=0.0051 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.1
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.++|+||.|+|||||+++|..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999963
No 451
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.49 E-value=0.0067 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+.|+|++|+|||||++.|..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999864
No 452
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.49 E-value=0.012 Score=47.05 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.2
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
.++..++++|.++.|||||+|+|.+...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce
Confidence 3455789999999999999999977543
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.47 E-value=0.0079 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.8
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.|+.|+||||+.+.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999854
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.46 E-value=0.0062 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.++|++|+||||+.++|.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999998864
No 455
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.46 E-value=0.03 Score=43.52 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=24.9
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
..+..-++++|+.|+|||||++.+.+..+...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~ 183 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGE 183 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCS
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcc
Confidence 34556799999999999999999976544433
No 456
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.46 E-value=0.0041 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=18.0
Q ss_pred CEEEEEeecCCchhHHHHHH
Q psy4669 88 PVVTIMGHVDHGKTTLLDTL 107 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L 107 (139)
--++++|+.|+|||||++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTB
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999984
No 457
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.44 E-value=0.0078 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++++|+||.|+|||||-..|++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999999964
No 458
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.0078 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+.|.||.|+|||||++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 5577899999999999999999854
No 459
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.39 E-value=0.0058 Score=57.57 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTL 103 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTL 103 (139)
++++..+||+.+|+|.|.||||||||
T Consensus 37 kni~v~iP~~~lvv~tG~SGSGKSSL 62 (993)
T 2ygr_A 37 RSVDLDLPRDALIVFTGLSGSGKSSL 62 (993)
T ss_dssp CSEEEEEESSSEEEEEESTTSSHHHH
T ss_pred CceeeeccCCCEEEEECCCCCcHHHH
Confidence 46789999999999999999999999
No 460
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.38 E-value=0.0059 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCCccccCCCEEEEEeecCCchhHH
Q psy4669 78 ADPSVLMKRPPVVTIMGHVDHGKTTL 103 (139)
Q Consensus 78 ~~~~~~~~r~pvv~ImG~~g~GKTTL 103 (139)
++++..+||+.+|+|.|.||||||||
T Consensus 35 kni~v~iP~~~lvv~tG~SGSGKSSL 60 (972)
T 2r6f_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSL 60 (972)
T ss_dssp CSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred CceeeeccCCcEEEEECCCCCCHHHH
Confidence 46788999999999999999999999
No 461
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.38 E-value=0.011 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.7
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.+.||+|+|||||.++|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999964
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.36 E-value=0.012 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++.++++.|+.|+||||+.+.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998864
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.35 E-value=0.011 Score=46.47 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.|+.|+||||+.+.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999864
No 464
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.33 E-value=0.0028 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.--++++|+.|+|||||++.+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4556689999999999999999864
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.33 E-value=0.0091 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++++|+||+|+|||||...|+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999964
No 466
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.32 E-value=0.0081 Score=53.88 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.5
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS 115 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~ 115 (139)
..++..++|+|+.++|||||+++|.+..+++.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v 97 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPS 97 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45677899999999999999999987665543
No 467
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.29 E-value=0.013 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.|+.|+||||+.+.|..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999865
No 468
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.28 E-value=0.0092 Score=46.71 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=19.6
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.++++.|+.|+||||+.+.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998854
No 469
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.24 E-value=0.0061 Score=55.90 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=21.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.++|+||+|||||||+++|..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~ 41 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQ 41 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999964
No 470
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.23 E-value=0.0086 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred CEEEEEeecCCchhHHHHHHHhcC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
..++|+|++++|||||+++|.+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 458999999999999999997744
No 471
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.20 E-value=0.0098 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.5
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++++|+||+|+|||||-..|+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.20 E-value=0.011 Score=46.26 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.5
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.++++.|..|+||||+.+.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999998854
No 473
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.17 E-value=0.013 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.2
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+++.|.|+.|+|||||++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999998854
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.15 E-value=0.0096 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++|+||+|+|||||-..|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998864
No 475
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.12 E-value=0.0097 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.7
Q ss_pred cCCCEEEEEeecCCchhHHHHHHH
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.++.++.++|++|+||||++..|+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999999886
No 476
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.11 E-value=0.01 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEEeecCCchhHHHHHHHhc
Q psy4669 89 VVTIMGHVDHGKTTLLDTLRNT 110 (139)
Q Consensus 89 vv~ImG~~g~GKTTLL~~L~~~ 110 (139)
.++|+|++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999764
No 477
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.10 E-value=0.012 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEEeecCCchhHHHHHHHh
Q psy4669 90 VTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.||+|+|||||.++|.+
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999965
No 478
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.09 E-value=0.013 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++++.|.|+.|+|||||++.+..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 58999999999999999999854
No 479
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.015 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.2
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++.+.|.|+.|+|||||++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999954
No 480
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=95.02 E-value=0.013 Score=34.63 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHh
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKS 50 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~ 50 (139)
++|.+||+.+++++.+++..|-..|. . -+.++ .++++ ....+-..|
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~g~-~-k~~~s-~l~~~-~~~~l~~~~ 48 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADAGI-R-KSADD-SVSAQ-EKQTLIDHL 48 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHTS-C-CSSSS-CEETT-GGGHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcCC-C-CCCCC-cCCHH-HHHHHHHHh
Confidence 47899999999999999999998874 2 24444 67755 344444443
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.98 E-value=0.013 Score=46.15 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.+.||.|+|||||.+++.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999864
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.97 E-value=0.018 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.9
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+..+.+.||.|+|||+|.++|+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455777889999999999999964
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.96 E-value=0.014 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.++++|+||+|+|||||...|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 46899999999999999998864
No 484
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.95 E-value=0.017 Score=49.93 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=26.0
Q ss_pred CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.+.++..++|+|++|+|||||++.|.+
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 345688999999999999999999998843
No 485
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.94 E-value=0.016 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.7
Q ss_pred CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRNTSV 112 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~~~v 112 (139)
..++++|.+|+|||||+++|.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999976443
No 486
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.94 E-value=0.012 Score=49.67 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.6
Q ss_pred CCEEEEEeecCCchhHHHHHHHh
Q psy4669 87 PPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 87 ~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+.+.|.|++|+|||||+++|.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999954
No 487
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.91 E-value=0.017 Score=48.78 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=24.3
Q ss_pred cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 83 LMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
-++++.++.|.|++|+|||||+..+..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999888743
No 488
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.85 E-value=0.01 Score=48.97 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=23.1
Q ss_pred ccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.+-.+-|+++|+.++|||||+++|.+..
T Consensus 155 Lk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 155 LKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 3345679999999999999999996543
No 489
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.85 E-value=0.019 Score=42.89 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.6
Q ss_pred CCCEEEEEeecCCchhHHH-HHH
Q psy4669 86 RPPVVTIMGHVDHGKTTLL-DTL 107 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL-~~L 107 (139)
++.++.+.|+.|+||||++ +.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999997 444
No 490
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.82 E-value=0.024 Score=43.00 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.7
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLR 108 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~ 108 (139)
.....+..++.+.|..|+|||||+..|.
T Consensus 8 ~~~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 8 HHHGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 3456788999999999999999999996
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.79 E-value=0.021 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..+.+.|+.|+|||+|.+++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999988754
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.77 E-value=0.017 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.5
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+..+.+.|+.|+|||+|.+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999964
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.75 E-value=0.018 Score=45.22 Aligned_cols=29 Identities=21% Similarity=0.064 Sum_probs=24.5
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
++....+..+.|+|++|+|||||...|..
T Consensus 28 ~~v~~~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 28 VLVDIYGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 34556788899999999999999999865
No 494
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.016 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred CEEEEEeecCCchhHHHHHHHh
Q psy4669 88 PVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 88 pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
--++++|..|+|||||++.+.+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999964
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.64 E-value=0.0089 Score=45.83 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEEeecCCchhHHHHHHHh
Q psy4669 90 VTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 90 v~ImG~~g~GKTTLL~~L~~ 109 (139)
+.+.|++|+|||+|.++|.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77899999999999999975
No 496
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.63 E-value=0.015 Score=51.00 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=25.5
Q ss_pred CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
.+++.+.|-+.|.|.+||||||+|++|..
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999999854
No 497
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.62 E-value=0.0065 Score=52.49 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.0
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS 111 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~ 111 (139)
.++..++|+|+.++|||||+++|.+..
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHT
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCC
Confidence 345679999999999999999998753
No 498
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=94.52 E-value=0.067 Score=34.23 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV 56 (139)
Q Consensus 1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~ 56 (139)
+|++|||+.+|++.+-|=+.|-..+....+++++ .+-+..+++++||.+..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et-----~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKT-----VEKVMAVVREHNYHPNA 51 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHH-----HHHHHHHHHHHTCCCC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHH-----HHHHHHHHHHhCCCccH
Confidence 6899999999999999999885442000122221 23455678899997654
No 499
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.50 E-value=0.021 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCEEEEEeecCCchhHHHHHHHh
Q psy4669 86 RPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 86 r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..+.+.|.|+.|+|||+|.+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999999999964
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.49 E-value=0.018 Score=44.48 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.5
Q ss_pred cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109 (139)
Q Consensus 85 ~r~pvv~ImG~~g~GKTTLL~~L~~ 109 (139)
..++.+.+.|+.|+|||+|.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556788999999999999999965
Done!