RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4669
(139 letters)
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 65.9 bits (159), Expect = 1e-14
Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 84 MK-RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
MK R P+V+++GHVDHGKTTLLD +R ++V E GGITQHIGA
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 52.3 bits (124), Expect = 1e-09
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
+V +G GKTTL + + G
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV 39
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 52.0 bits (124), Expect = 2e-09
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVV-----KSEFGGITQHIGA 126
+ I H+D GKTT + + + + G T
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFME 50
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 49.9 bits (118), Expect = 9e-09
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
V ++GH GKTTL + L + K G + +
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTT 41
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 47.3 bits (111), Expect = 7e-08
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133
P + I G + GKT+LL L Y
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTT-----DSVRPTVVSQEPLSAADYD 44
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 45.7 bits (107), Expect = 2e-07
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 86 RPPV-VTIMGHVDHGKTTLLDTLRNTSVVKSE 116
+P V + ++GHVDHGKTTL+ + K
Sbjct: 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHS 37
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 45.4 bits (106), Expect = 2e-07
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 85 KRPPV-VTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAF 127
++ V + ++GHVDHGKTTL L + + GIT IG
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFA 48
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 43.7 bits (102), Expect = 1e-06
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 83 LMKRPPV-VTIMGHVDHGKTTLLDTL 107
+ + V + +GHVD GK+TL +
Sbjct: 19 MYGKEHVNIVFIGHVDAGKSTLGGNI 44
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 42.4 bits (99), Expect = 4e-06
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG----------------GITQHIGA 126
++++ HVDHGK+TL D+L + + S GIT A
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTA 72
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 41.9 bits (98), Expect = 4e-06
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG-----------------GITQHIGA 126
V +GHVDHGKTTL L + ++ GIT +
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH 59
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 41.9 bits (98), Expect = 5e-06
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAF 127
V +GHVDHGKTTL + + GIT +
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV 59
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 40.1 bits (92), Expect = 2e-05
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVV 113
+ I GH+DHGKTTL L +
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIAST 31
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 39.4 bits (91), Expect = 5e-05
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 90 VTIMGHVDHGKTTLLDTL 107
+ ++GHVDHGK+TL+ L
Sbjct: 6 LIVIGHVDHGKSTLVGRL 23
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 39.2 bits (90), Expect = 5e-05
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV 128
V +G D GKT L L + IT +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYK 40
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 38.1 bits (87), Expect = 9e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113
+ V I+G + GK+TL + + N
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERA 34
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 38.2 bits (87), Expect = 1e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAF 127
+ I+G + GK+TLL+ L + S+ + I
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI 47
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 37.9 bits (87), Expect = 1e-04
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 92 IMGHVDHGKTTLLDTL 107
G+VD GK+TL+ L
Sbjct: 14 TCGNVDDGKSTLIGRL 29
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 37.0 bits (84), Expect = 2e-04
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133
V I+G + GK+TLL+ L V T
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG 51
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 36.9 bits (85), Expect = 3e-04
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 85 KRPPV-VTIMGHVDHGKTTLLDTL 107
++ + V ++GHVD GK+T L
Sbjct: 3 EKSHINVVVIGHVDSGKSTTTGHL 26
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 36.2 bits (82), Expect = 5e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123
+ G + GK+TL+ L V + + G+T+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK 36
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 35.9 bits (81), Expect = 6e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI 124
V I+G + GK+TL + L + G+T+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP 38
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 33.2 bits (74), Expect = 0.005
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 86 RPPVVTIMGHVDHGKTTLLDTLRN--TSVVKSEFGGITQHIGAFVGFLYH 133
V G + GK++ L+TL N + S+ G TQ I F
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 64
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.2 bits (74), Expect = 0.006
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 88 PVVTIMGHVDHGKTTLLDTLRNTSVVK--SEFGGITQH 123
P + + G + GK++ +++L N + S G TQ
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 32.4 bits (72), Expect = 0.009
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKS 115
+T++G GKTT ++ + + +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNED 30
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.024
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 90 VTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHI 124
V I G + GK++LL+ L R ++V G +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 31.2 bits (69), Expect = 0.025
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 88 PVVTIMGHVDHGKTTLLDTLRNT--SVVKSEFGGITQHIG 125
V ++G+ + GK++LL + + F ++ ++G
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG 41
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.1 bits (69), Expect = 0.027
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI 124
V ++G GK+TLL + + +++ T
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP 38
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 30.7 bits (68), Expect = 0.038
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVV 113
+ I+G + GK+TLL+ L N
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRA 26
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.6 bits (63), Expect = 0.22
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTLRNTS-----VVKSEFGGITQHI 124
V + G GK++ ++TLR K+ +T
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 98
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.5 bits (60), Expect = 0.57
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTL 107
+ + G GK+T L+
Sbjct: 52 GNTLRLGVTGTPGAGKSTFLEAF 74
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.5 bits (60), Expect = 0.61
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTLR 108
R V I G GK+T +D L
Sbjct: 49 GRAIRVGITGVPGVGKSTTIDALG 72
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial
translation initiation factor IF2 {Escherichia coli
[TaxId: 562]}
Length = 49
Score = 24.9 bits (55), Expect = 1.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 1 MTLKDLAKSMGVDCDHLYEVM 21
+T+K LA + L +
Sbjct: 3 VTIKTLAAERQTSVERLVQQF 23
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.4 bits (58), Expect = 1.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTLRN 109
K+ P++++ G G +T+ T
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 2.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123
VV I+G GK+ L++ L S + H
Sbjct: 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSH 68
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.4 bits (54), Expect = 2.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE 116
L K+ + +G + GKTTLL L++ + +
Sbjct: 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 25.4 bits (54), Expect = 2.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 87 PPVVTIMGHVDHGKTTLLDTLR 108
V T+ G GK+T +
Sbjct: 24 ELVTTLSGGNGAGKSTTMAAFV 45
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 2.6
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIY-DFQVIIDIIQKSGMKYMVINP 59
+T+ +++ + + N + Y + +I+ + ++ + K I+P
Sbjct: 207 ITIDEISSMTSMTTTDILHTAKT-LNILRYYKGQHIIFLNEDILDRYNRLKAKKRRTIDP 265
Query: 60 TN 61
Sbjct: 266 NR 267
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 25.2 bits (55), Expect = 2.9
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 70 KDVERRPPADPSVL------MKRPPVVTIMGHVDHGKTTLLDTL 107
+ V+ +L + ++ G GK+T+ L
Sbjct: 5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 25.2 bits (54), Expect = 2.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 88 PVVTIMGHVDHGKTTLLDTL------RNTSVVKSEFGGIT 121
V + G + GKTTLL + +V+++EFG ++
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS 43
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 24.6 bits (52), Expect = 4.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 84 MKRPPVVTIMGHVDHGKTTLLDTLRN 109
+P V I G++ GKTT L+
Sbjct: 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 24.3 bits (51), Expect = 5.3
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
+ +G + GKTTLL L+N +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN-----DRLATLQPTWHP 34
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 24.5 bits (53), Expect = 6.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
++ I G GKT+LL +
Sbjct: 64 MLAITGSTGSGKTSLLMLI 82
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.2 bits (51), Expect = 6.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 88 PVVTIMGHVDHGKTTLLDTL 107
P++ GKTTLL L
Sbjct: 3 PLLAFAAWSGTGKTTLLKKL 22
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.2 bits (52), Expect = 7.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
V I+G GK+TL++ +
Sbjct: 32 VTLIIGPNGSGKSTLINVI 50
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 24.1 bits (52), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
VV G GKTTLL T+
Sbjct: 29 VVNFHGPNGIGKTTLLKTI 47
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 24.0 bits (52), Expect = 7.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
V +G GK+TL++ +
Sbjct: 46 TVAFVGMSGGGKSTLINLI 64
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 23.9 bits (51), Expect = 7.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
I+G GKT L+ +
Sbjct: 28 YFVILGPTGAGKTLFLELI 46
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 23.9 bits (50), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113
M R + I+G GKTT+L L+ VV
Sbjct: 2 MTREMRILILGLDGAGKTTILYRLQVGEVV 31
>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.0 bits (49), Expect = 8.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 87 PPVVTIMGHVDHGKTTL 103
PP+V + HV TTL
Sbjct: 4 PPLVKVTHHVTSSVTTL 20
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 23.6 bits (50), Expect = 9.3
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI 124
+ +MG GK++ ++++ VV S F
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP 70
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 23.8 bits (51), Expect = 9.4
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 84 MKRPPVVTIMGHVDHGKTTLLDTLRNT 110
M V I G GKTT L
Sbjct: 1 MPTLLRVYIDGPHGMGKTTTTQLLVAL 27
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 23.7 bits (51), Expect = 9.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 89 VVTIMGHVDHGKTTLLDTL 107
V ++G GK+T+ L
Sbjct: 42 VTALVGPNGSGKSTVAALL 60
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 23.5 bits (49), Expect = 9.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 90 VTIMGHVDHGKTTLLDTLRNTSV 112
+ ++G + GKTT+L V
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,786
Number of extensions: 23105
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 75
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)