BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy467
         (845 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
 pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
          Length = 577

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SVN +A  +  GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 256 QTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 313

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 373 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 379 QTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 436

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
            ++T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 437 DDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 496 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534



 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 5   VEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESV 64
           V++     AH +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V
Sbjct: 6   VKERNRLEAHSSSVRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 63

Query: 65  QFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFI 124
            F    +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +
Sbjct: 64  AFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTV 122

Query: 125 KLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           KLW+ R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 123 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 133 QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 190

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 191 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+N + F PDGQ IAS  +D  V++
Sbjct: 250 -RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 174 QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 231

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 291 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329



 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 51  QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 108

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 168 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 338 QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 395

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P    + S S D  +KLW+
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS  +D  V++
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493



 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A      Q +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 420 QTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 477

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 478 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            R    + T  GHS S+  + FSPDGQ IAS   D  V++
Sbjct: 537 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575



 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
           +    H +SV  +A     GQ +A+  DDK V LW       + +L+GHS+ V  V F  
Sbjct: 461 QTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 518

Query: 69  GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +T+++     ++K+WN     +Q TL GH SS+  V F P G  + S S D  +KLW+
Sbjct: 519 DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577


>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
          Length = 410

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 75/139 (53%)

Query: 30  VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAV 89
           V+ +  +D  + +W     +   +L GH+  V+ + F +  + L++     +IK+W+   
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIR 149
               RT++GH  +++SV   P GD++ S S D  IK+W+++   C+ T+ GH + +  +R
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241

Query: 150 FSPDGQWIASGGEDGVVRI 168
            + DG  IAS   D  VR+
Sbjct: 242 PNQDGTLIASCSNDQTVRV 260



 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +LSGH +PV  V F      + +  +  +IK+W+      +RTL GH  S+  + F   G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162

Query: 113 DYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             L S S D  IKLWD +   CI T  GH  +++S+   P+G  I S   D  +++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           K G  L +G  DK + +W +    C+M+L GH   V  V F +G + + +     ++++W
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365

Query: 86  NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
           +       +TLN H+  +TS+DFH    Y+ +GS+D  +K+W+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410



 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 20/163 (12%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG-----------NGEET-- 72
           + G ++A+  +D+ V +W +    C   L  H   VE + +             G ET  
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303

Query: 73  -------LSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
                  L +G +  +IK+W+++      TL GH + +  V FH  G ++ S + D  ++
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363

Query: 126 LWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           +WD + K C+ T   H   + S+ F     ++ +G  D  V++
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406



 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG-NGEETLSAGCQSGSIKIW 85
           SG++LA+   D  + LW      CI ++ GH   V SV    NG+  +SA  +  +IK+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMW 219

Query: 86  NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
            +      +T  GH+  +  V  +  G  + S S D  +++W +  K C    R H   +
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279

Query: 146 NSIRFSPD 153
             I ++P+
Sbjct: 280 ECISWAPE 287



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 121/297 (40%), Gaps = 55/297 (18%)

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIR 149
           P  +  L+GH+S +T V FHP    + S S D+ IK+WD        T +GH+ S+  I 
Sbjct: 98  PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157

Query: 150 FSPDGQWIASGGEDGVVRI-------------GASFHLTNTSI-----HVVDLSLVHPLG 191
           F   G+ +AS   D  +++             G   ++++ SI     H+V  S    + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217

Query: 192 TPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAE-----SEDQAGEEELF 246
               Q    V         K+FT     G +  + + R  ++       S DQ     + 
Sbjct: 218 MWEVQTGYCV---------KTFT-----GHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263

Query: 247 ATIANPCDYSAIFQPHRSLNRSGTCVP----VSVSRTSLSILPQS----PMLCFILTTSS 298
           AT    C   A  + HR +    +  P     S+S  + S   +S    P L      S 
Sbjct: 264 AT--KEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL-----LSG 314

Query: 299 SADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLG-GDTEGLKVYGWEPAR 354
           S D+T+  WD+     + T   + + +R + F  GG+ +L   D + L+V+ ++  R
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371


>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
 pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
          Length = 310

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI-MSLSGHSTPVESV 64
           EK  DF AH   +  +A+      VL+ G DD  V LW    +  +  +  GH   V  V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146

Query: 65  QFGNGE-ETLSAGCQSGSIKIWNLAVPTVQRTLN-GHKSSITSVDFHPYGD--YLCSGSL 120
            F   +  T ++GC   ++K+W+L   T   TL  G +  +  VD++P  D  Y+ + S 
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 121 DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGAS 171
           D  IK+WD + K C+ T  GH  +++   F P    I SG EDG ++I  S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFG 67
           + F  H   V C+A   K     A+G  D+ V +W+LG+S    +L+ G    V  V + 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193

Query: 68  N--GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
               +  +       +IKIW+    +   TL GH S+++   FHP    + SGS D  +K
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253

Query: 126 LWD-------------LRRKGCIYTYRGHSKSINSIRFSPDGQ--WIASGGEDG 164
           +W+             L R  CI T+             P G+  +IASG ++G
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWCIATH-------------PTGRKNYIASGFDNG 294



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 39  KVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNG 98
           +V LW       + S+    TPV + +F   +  +  G     I+++N            
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI-YTYRGHSKSINSIRFSP-DGQW 156
           H   I S+  HP   Y+ SGS D  +KLW+      +  T+ GH   +  + F+P D   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155

Query: 157 IASGGEDGVVRIGA------SFHLTNTSIHVVDLSLVHPLGTPPPQYTSS 200
            ASG  D  V++ +      +F LT      V+    +PL   P   T+S
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP 90
           + T  DD  + +W     +C+ +L GH + V    F      + +G + G++KIWN +  
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260

Query: 91  TVQRTLNGHKSSITSVDFHPYG--DYLCSGSLDSFIKL 126
            V++TLN        +  HP G  +Y+ SG  + F  L
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298



 Score = 39.7 bits (91), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 42/275 (15%)

Query: 92  VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
           +++T +     +  +DFHP   ++ +      ++LW+   +  + + +     + + +F 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64

Query: 152 PDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRK 211
               WI  G +D  +R+   F+  NT   VVD           P Y  S+          
Sbjct: 65  ARKNWIIVGSDDFRIRV---FNY-NTGEKVVDFE-------AHPDYIRSIAVHPTKPYVL 113

Query: 212 SFTKGRPGGTKAKIDVTRIEEN-AESEDQAGEEELFATIA-NPCDYSAIFQPHRSLNRSG 269
           S      G     + +   E N A  +   G E     +A NP D S        L+R+ 
Sbjct: 114 S------GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF--ASGCLDRTV 165

Query: 270 TCVPVSVSRTSLSI---------------LPQSPMLCFILTTSSSADRTVNFWDLEKFSL 314
               +  S  + ++               LP  P +      ++S D T+  WD +  S 
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-----TASDDLTIKIWDYQTKSC 220

Query: 315 VSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVY 348
           V+T E + S +    F      ++ G  +G LK++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255


>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
          Length = 304

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI-MSLSGHSTPVESV 64
           EK  DF AH   +  +A+      VL+ G DD  V LW    +  +  +  GH   V  V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146

Query: 65  QFGNGE-ETLSAGCQSGSIKIWNLAVPTVQRTLN-GHKSSITSVDFHPYGD--YLCSGSL 120
            F   +  T ++GC   ++K+W+L   T   TL  G +  +  VD++P  D  Y+ + S 
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 121 DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGAS 171
           D  IK+WD + K C+ T  GH  +++   F P    I SG EDG ++I  S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFG 67
           + F  H   V C+A   K     A+G  D+ V +W+LG+S    +L+ G    V  V + 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193

Query: 68  N--GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
               +  +       +IKIW+    +   TL GH S+++   FHP    + SGS D  +K
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253

Query: 126 LWD-------------LRRKGCIYTYRGHSKSINSIRFSPDGQ--WIASGGEDG 164
           +W+             L R  CI T+             P G+  +IASG ++G
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWCIATH-------------PTGRKNYIASGFDNG 294



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 39  KVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNG 98
           +V LW       + S+    TPV + +F   +  +  G     I+++N            
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI-YTYRGHSKSINSIRFSP-DGQW 156
           H   I S+  HP   Y+ SGS D  +KLW+      +  T+ GH   +  + F+P D   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155

Query: 157 IASGGEDGVVRIGA------SFHLTNTSIHVVDLSLVHPLGTPPPQYTSS 200
            ASG  D  V++ +      +F LT      V+    +PL   P   T+S
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP 90
           + T  DD  + +W     +C+ +L GH + V    F      + +G + G++KIWN +  
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260

Query: 91  TVQRTLNGHKSSITSVDFHPYG--DYLCSGSLDSFIKL 126
            V++TLN        +  HP G  +Y+ SG  + F  L
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298



 Score = 39.7 bits (91), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 42/275 (15%)

Query: 92  VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
           +++T +     +  +DFHP   ++ +      ++LW+   +  + + +     + + +F 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64

Query: 152 PDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRK 211
               WI  G +D  +R+   F+  NT   VVD           P Y  S+          
Sbjct: 65  ARKNWIIVGSDDFRIRV---FNY-NTGEKVVDFE-------AHPDYIRSIAVHPTKPYVL 113

Query: 212 SFTKGRPGGTKAKIDVTRIEEN-AESEDQAGEEELFATIA-NPCDYSAIFQPHRSLNRSG 269
           S      G     + +   E N A  +   G E     +A NP D S        L+R+ 
Sbjct: 114 S------GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF--ASGCLDRTV 165

Query: 270 TCVPVSVSRTSLSI---------------LPQSPMLCFILTTSSSADRTVNFWDLEKFSL 314
               +  S  + ++               LP  P +      ++S D T+  WD +  S 
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-----TASDDLTIKIWDYQTKSC 220

Query: 315 VSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVY 348
           V+T E + S +    F      ++ G  +G LK++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255


>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
 pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
          Length = 334

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 56  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 175

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRI 197



 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 128 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 247 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 285



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEE 71
           AH   V+ +   +  G ++ +   D    +W      C+ +L    + PV  V+F    +
Sbjct: 169 AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227

Query: 72  TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLW 127
            + A     ++K+W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIW 286

Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           +L+ K  +   +GH+  + S    P    IAS     D  +++  S
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332



 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 75


>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
          Length = 604

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI-MSLSGHSTPVESV 64
           EK  DF AH   +  +A+      VL+ G DD  V LW    +  +  +  GH   V  V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146

Query: 65  QFGNGE-ETLSAGCQSGSIKIWNLAVPTVQRTLN-GHKSSITSVDFHPYGD--YLCSGSL 120
            F   +  T ++GC   ++K+W+L   T   TL  G +  +  VD++P  D  Y+ + S 
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 121 DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGAS 171
           D  IK+WD + K C+ T  GH  +++   F P    I SG EDG ++I  S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFG 67
           + F  H   V C+A   K     A+G  D+ V +W+LG+S    +L+ G    V  V + 
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193

Query: 68  N--GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
               +  +       +IKIW+    +   TL GH S+++   FHP    + SGS D  +K
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253

Query: 126 LWD-------------LRRKGCIYTYRGHSKSINSIRFSPDGQ--WIASGGEDG 164
           +W+             L R  CI T+             P G+  +IASG ++G
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWCIATH-------------PTGRKNYIASGFDNG 294



 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 39  KVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNG 98
           +V LW       + S+    TPV + +F   +  +  G     I+++N            
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI-YTYRGHSKSINSIRFSP-DGQW 156
           H   I S+  HP   Y+ SGS D  +KLW+      +  T+ GH   +  + F+P D   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155

Query: 157 IASGGEDGVVRIGA------SFHLTNTSIHVVDLSLVHPLGTPPPQYTSS 200
            ASG  D  V++ +      +F LT      V+    +PL   P   T+S
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP 90
           + T  DD  + +W     +C+ +L GH + V    F      + +G + G++KIWN +  
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260

Query: 91  TVQRTLNGHKSSITSVDFHPYG--DYLCSGSLDSFIKL 126
            V++TLN        +  HP G  +Y+ SG  + F  L
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298



 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 42/275 (15%)

Query: 92  VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
           +++T +     +  +DFHP   ++ +      ++LW+   +  + + +     + + +F 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64

Query: 152 PDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRK 211
               WI  G +D  +R+   F+  NT   VVD           P Y  S+          
Sbjct: 65  ARKNWIIVGSDDFRIRV---FNY-NTGEKVVDFE-------AHPDYIRSIAVHPTKPYVL 113

Query: 212 SFTKGRPGGTKAKIDVTRIEEN-AESEDQAGEEELFATIA-NPCDYSAIFQPHRSLNRSG 269
           S      G     + +   E N A  +   G E     +A NP D S        L+R+ 
Sbjct: 114 S------GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF--ASGCLDRTV 165

Query: 270 TCVPVSVSRTSLSI---------------LPQSPMLCFILTTSSSADRTVNFWDLEKFSL 314
               +  S  + ++               LP  P +      ++S D T+  WD +  S 
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-----TASDDLTIKIWDYQTKSC 220

Query: 315 VSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVY 348
           V+T E + S +    F      ++ G  +G LK++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255


>pdb|2GNQ|A Chain A, Structure Of Wdr5
          Length = 336

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 58  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 177

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRI 199



 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 130 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 188

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 248

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 249 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 287



 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEE 71
           AH   V+ +   +  G ++ +   D    +W      C+ +L    + PV  V+F    +
Sbjct: 171 AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229

Query: 72  TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLW 127
            + A     ++K+W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIW 288

Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           +L+ K  +   +GH+  + S    P    IAS     D  +++  S
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334



 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 77


>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
          Length = 814

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI-MSLSGHSTPVESV 64
           EK  DF AH   +  +A+      VL +G DD  V LW    +  +  +  GH   V  V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146

Query: 65  QFGNGE-ETLSAGCQSGSIKIWNLAVPTVQRTLN-GHKSSITSVDFHPYGD--YLCSGSL 120
            F   +  T ++GC   ++K+W+L   T   TL  G +  +  VD++P  D  Y+ + S 
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 121 DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGAS 171
           D  IK+WD + K C+ T  GH  +++   F P    I SG EDG ++I  S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 31/172 (18%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFGN- 68
           F  H   V C+A   K     A+G  D+ V +W+LG+S    +L+ G    V  V +   
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195

Query: 69  -GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
             +  +       +IKIW+    +   TL GH S+++   FHP    + SGS D  +K+W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

Query: 128 D-------------LRRKGCIYTYRGHSKSINSIRFSPDGQ--WIASGGEDG 164
           +             L R  CI T+             P G+  +IASG ++G
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATH-------------PTGRKNYIASGFDNG 294



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 39  KVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNG 98
           +V +W       + S+    TPV + +F   +  +  G     I+++N            
Sbjct: 36  RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI-YTYRGHSKSINSIRFSP-DGQW 156
           H   I S+  HP   Y+ SGS D  +KLW+      +  T+ GH   +  + F+P D   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155

Query: 157 IASGGEDGVVRIGA------SFHLTNTSIHVVDLSLVHPLGTPPPQYTSS 200
            ASG  D  V++ +      +F LT      V+    +PL   P   T+S
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP 90
           + T  DD  + +W     +C+ +L GH + V    F      + +G + G++KIWN +  
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260

Query: 91  TVQRTLNGHKSSITSVDFHPYG--DYLCSGSLDSFIKL 126
            V++TLN        +  HP G  +Y+ SG  + F  L
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298



 Score = 38.5 bits (88), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 42/275 (15%)

Query: 92  VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
           +++T +     +  +DFHP   ++ +      +++W+   +  + + +     + + +F 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64

Query: 152 PDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRK 211
               WI  G +D  +R+   F+  NT   VVD           P Y  S+   H T   K
Sbjct: 65  ARKNWIIVGSDDFRIRV---FNY-NTGEKVVDFE-------AHPDYIRSIAV-HPT---K 109

Query: 212 SFTKGRPGGTKAKIDVTRIEEN-AESEDQAGEEELFATIA-NPCDYSAIFQPHRSLNRSG 269
            +     G     + +   E N A  +   G E     +A NP D S        L+R+ 
Sbjct: 110 PYV--LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF--ASGCLDRTV 165

Query: 270 TCVPVSVSRTSLSI---------------LPQSPMLCFILTTSSSADRTVNFWDLEKFSL 314
               +  S  + ++               LP  P +      ++S D T+  WD +  S 
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-----TASDDLTIKIWDYQTKSC 220

Query: 315 VSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVY 348
           V+T E + S +    F      ++ G  +G LK++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255


>pdb|2H9L|A Chain A, Wdr5delta23
 pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
          Length = 329

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 51  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 170

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 171 AVHFNRDGSLIVSSSYDGLCRI 192



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 123 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 181

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 241

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 242 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 280



 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150



 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 295 HTDVVISTACHPTENIIASAALENDKTIKLWKS 327



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70


>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
          Length = 318

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRI 181



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 112 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139



 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWKS 316



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59


>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
 pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 308

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 30  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 149

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 150 AVHFNRDGSLIVSSSYDGLCRI 171



 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 102 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 221 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 259



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 274 HTDVVISTACHPTENIIASAALENDKTIKLWKS 306



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 49


>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
 pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
           Complex
 pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
           Complex
          Length = 312

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 34  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRI 175



 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 106 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWKS 310



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53


>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
           Histone Mark That Supports Euchromatin Maintenance
          Length = 318

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRI 181



 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 112 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283

Query: 141 HSKSINSIRFSPDGQWIASGG 161
           H+  + S    P    IAS  
Sbjct: 284 HTDVVISTACHPTENIIASAA 304



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 267

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59


>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
 pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
 pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
           Assembly And Regulation
          Length = 317

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 39  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 158

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 159 AVHFNRDGSLIVSSSYDGLCRI 180



 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 111 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 169

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 229

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 230 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 268



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 266

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282

Query: 141 HSKSINSIRFSPDGQWIASGG 161
           H+  + S    P    IAS  
Sbjct: 283 HTDVVISTACHPTENIIASAA 303



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 58


>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
           With 2-
           Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
           5- Nitrophenyl]benzamide
          Length = 312

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 34  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRI 175



 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 106 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWKS 310



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53


>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
 pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
          Length = 313

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 35  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 154

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 155 AVHFNRDGSLIVSSSYDGLCRI 176



 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 107 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 165

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 225

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 226 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 264



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 262

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 263 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 279 HTDVVISTACHPTENIIASAALENDKTIKLWKS 311



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 54


>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll2
 pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll3
 pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll4
 pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1b
          Length = 318

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 40  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRI 181



 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 112 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283

Query: 141 HSKSINSIRFSPDGQWIASGG 161
           H+  + S    P    IAS  
Sbjct: 284 HTDVVISTACHPTENIIASAA 304



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 267

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59


>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRI 178



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 109 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266



 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%)

Query: 51  IMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
           + +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +  
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78

Query: 111 YGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136



 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMV 264

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A      +K+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKS 313



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 30/38 (78%)

Query: 135 IYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           ++T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56


>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 311

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 33  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 152

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 153 AVHFNRDGSLIVSSSYDGLCRI 174



 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 105 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 163

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 223

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 224 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 262



 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276

Query: 141 HSKSINSIRFSPDGQWIASGG 161
           H+  + S    P    IAS  
Sbjct: 277 HTDVVISTACHPTENIIASAA 297



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 260

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 52


>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
           Angstrom
 pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRI 178



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 109 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266



 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%)

Query: 51  IMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
           + +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +  
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78

Query: 111 YGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136



 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMV 264

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
           + G ++ +   D    +W      C+ +L    + PV  V+F    + + A     ++K+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221

Query: 85  WNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
           W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +G
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280

Query: 141 HSKSINSIRFSPDGQWIASGG--EDGVVRIGAS 171
           H+  + S    P    IAS     D  +++  S
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWKS 313



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 30/38 (78%)

Query: 135 IYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           ++T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56


>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
          Length = 315

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRI 178



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
            H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      
Sbjct: 108 GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226

Query: 132 KGCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
             C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266



 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136



 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFG-NGEETLSAGCQSGSIK 83
           + G ++ +   D    +W      C+ +L    + PV  V+F  NG+  L+A   + ++K
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLK 220

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYR 139
           +W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

Query: 140 GHSKSINSIRFSPDGQWIASGG 161
           GH+  + S    P    IAS  
Sbjct: 280 GHTDVVISTACHPTENIIASAA 301



 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56



 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 264

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKL+
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311


>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
          Length = 315

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA+   DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRI 178



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
            H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      
Sbjct: 108 GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226

Query: 132 KGCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
             C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266



 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L++      IKIW       ++T++GHK  I+ V +   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136



 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFG-NGEETLSAGCQSGSIK 83
           + G ++ +   D    +W      C+ +L    + PV  V+F  NG+  L+A   + ++K
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLK 220

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYR 139
           +W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

Query: 140 GHSKSINSIRFSPDGQWIASGG 161
           GH+  + S    P    IAS  
Sbjct: 280 GHTDVVISTACHPTENIIASAA 301



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+AS   D +++I  ++
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56



 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 264

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKL 126
            IWNL    + + L GH   + S   HP  + + S +L  D  IKL
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310


>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
          Length = 315

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +G+ LA    DK + +W         ++SGH   +  V + +    L +     ++KIW+
Sbjct: 37  NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
           ++     +TL GH + +   +F+P  + + SGS D  +++WD++   C+ T   HS  ++
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156

Query: 147 SIRFSPDGQWIASGGEDGVVRI 168
           ++ F+ DG  I S   DG+ RI
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRI 178



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V C     +S  ++ +G  D+ V +W +    C+ +L  HS PV +V F      +
Sbjct: 109 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167

Query: 74  SAGCQSGSIKIWNLAVPTVQRTL-NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            +    G  +IW+ A     +TL +     ++ V F P G Y+ + +LD+ +KLWD  + 
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227

Query: 133 GCIYTYRGHSKSINSI--RFS-PDGQWIASGGEDGVVRI 168
            C+ TY GH      I   FS   G+WI SG ED +V I
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266



 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%)

Query: 52  MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
            +L+GH+  V SV+F    E L+A      IKIW       ++T++GHK  I+ V +   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + L S S D  +K+WD+    C+ T +GHS  +    F+P    I SG  D  VRI
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN----GEETLSAGCQSGSI 82
           +G+ +     D  + LW   K  C+ + +GH      + F N    G + + +G +   +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLV 264

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL--DSFIKLW 127
            IWNL    + + L GH   + S   HP  + + S +L  D  IKLW
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFG-NGEETLSAGCQSGSIK 83
           + G ++ +   D    +W      C+ +L    + PV  V+F  NG+  L+A   + ++K
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLK 220

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPY----GDYLCSGSLDSFIKLWDLRRKGCIYTYR 139
           +W+ +     +T  GHK+    + F  +    G ++ SGS D+ + +W+L+ K  +   +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

Query: 140 GHSKSINSIRFSPDGQWIASGG 161
           GH+  + S    P    IAS  
Sbjct: 280 GHTDVVISTACHPTENIIASAA 301



 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 29/37 (78%)

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           +T  GH+K+++S++FSP+G+W+A+   D +++I  ++
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY 56


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 22  ALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGS 81
           A   + GQ +A+ G DK + ++       ++ +  H   V    F + +  ++       
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687

Query: 82  IKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL--CSGSLDSFIKLWDLRRKGCIYTYR 139
           +KIW+ A   +  T + H   +    F    ++L   +GS D F+KLWDL +K C  T  
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 747

Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           GH+ S+N  RFSPD + +AS   DG +R+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRL 776



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 56/211 (26%)

Query: 14  HGASVNCLALGKKSGQVL-ATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
           H   VNC     KS  +L ATG +D  + LW L +  C  ++ GH+  V   +F   +E 
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTLN---------------------------------GH 99
           L++    G++++W++     ++++N                                   
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824

Query: 100 KSSITSVDFHPYG---------------------DYLCSGSLDSF-IKLWDLRRKGCIYT 137
           K+ +   D H  G                     D+L   +L  + ++LW++  +  +  
Sbjct: 825 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 884

Query: 138 YRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            RGH   ++ + FSPDG    +  +D  +R+
Sbjct: 885 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 28   GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
            G+ L +  +D  + +W     + +  L  H   V+  +       LS     G++K+WN+
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNV 1079

Query: 88   AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINS 147
                ++R    H+ ++ S           S S D   K+W       ++  +GH+  +  
Sbjct: 1080 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1139

Query: 148  IRFSPDGQWIASGGEDGVVRI 168
              FS DG  +A+G ++G +RI
Sbjct: 1140 SAFSLDGILLATGDDNGEIRI 1160



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 12/168 (7%)

Query: 10   DFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNG 69
            DF  H  +V   A+   + +  +T  D K   +W+    + +  L GH+  V    F   
Sbjct: 1087 DFTCHQGTVLSCAISSDATKFSSTSAD-KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145

Query: 70   EETLSAGCQSGSIKIWNL---------AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL 120
               L+ G  +G I+IWN+         A  +V+     H   +T V F P    L S   
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1204

Query: 121  DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
              ++K W++       T+  +  ++  I  SPD +   +    G++ I
Sbjct: 1205 -GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1251



 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 71   ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
            E ++ G + G+IKI  L    V  +  GHK ++  + F   G  L S S DS I++W+ +
Sbjct: 981  EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040

Query: 131  RKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                ++  + H +++   R   D + + S   DG V++
Sbjct: 1041 TGDYVF-LQAHQETVKDFRLLQDSR-LLSWSFDGTVKV 1076



 Score = 38.9 bits (89), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 100  KSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIAS 159
            ++ ++     P+ +Y+  G  D  IK+ +L       +  GH K++  I+F+ DG+ + S
Sbjct: 968  EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027

Query: 160  GGEDGVVRI 168
              ED V+++
Sbjct: 1028 SSEDSVIQV 1036



 Score = 33.1 bits (74), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAG 76
           V C +      +++    +  KV L+ +  S  +  + +GH + ++   F   +      
Sbjct: 808 VKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865

Query: 77  CQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
                +++WN+          GH S +  V F P G    + S D  I++W+ ++
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920



 Score = 32.7 bits (73), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 37   DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
            D  V +W +         + H   V S    +     S+     + KIW+  + +    L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130

Query: 97   NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTY---------RGHSKSINS 147
             GH   +    F   G  L +G  +  I++W++     +++            H   +  
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1190

Query: 148  IRFSPDGQWIASGG 161
            + FSPD + + S G
Sbjct: 1191 VCFSPDSKTLVSAG 1204


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 22  ALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGS 81
           A   + GQ +A+ G DK + ++       ++ +  H   V    F + +  ++       
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680

Query: 82  IKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL--CSGSLDSFIKLWDLRRKGCIYTYR 139
           +KIW+ A   +  T + H   +    F    ++L   +GS D F+KLWDL +K C  T  
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740

Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           GH+ S+N  RFSPD + +AS   DG +R+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRL 769



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 56/211 (26%)

Query: 14  HGASVNCLALGKKSGQVL-ATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
           H   VNC     KS  +L ATG +D  + LW L +  C  ++ GH+  V   +F   +E 
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTLN---------------------------------GH 99
           L++    G++++W++     ++++N                                   
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817

Query: 100 KSSITSVDFHPYG---------------------DYLCSGSLDSF-IKLWDLRRKGCIYT 137
           K+ +   D H  G                     D+L   +L  + ++LW++  +  +  
Sbjct: 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877

Query: 138 YRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            RGH   ++ + FSPDG    +  +D  +R+
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 28   GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
            G+ L +  +D  + +W     + +  L  H   V+  +       LS     G++K+WN+
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNV 1072

Query: 88   AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINS 147
                ++R    H+ ++ S           S S D   K+W       ++  +GH+  +  
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1132

Query: 148  IRFSPDGQWIASGGEDGVVRI 168
              FS DG  +A+G ++G +RI
Sbjct: 1133 SAFSLDGILLATGDDNGEIRI 1153



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 12/168 (7%)

Query: 10   DFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNG 69
            DF  H  +V   A+   + +  +T  D K   +W+    + +  L GH+  V    F   
Sbjct: 1080 DFTCHQGTVLSCAISSDATKFSSTSAD-KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138

Query: 70   EETLSAGCQSGSIKIWNL---------AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL 120
               L+ G  +G I+IWN+         A  +V+     H   +T V F P    L S   
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197

Query: 121  DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
              ++K W++       T+  +  ++  I  SPD +   +    G++ I
Sbjct: 1198 -GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1244



 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 71   ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
            E ++ G + G+IKI  L    V  +  GHK ++  + F   G  L S S DS I++W+ +
Sbjct: 974  EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033

Query: 131  RKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                ++  + H +++   R   D + + S   DG V++
Sbjct: 1034 TGDYVF-LQAHQETVKDFRLLQDSR-LLSWSFDGTVKV 1069



 Score = 38.9 bits (89), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 100  KSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIAS 159
            ++ ++     P+ +Y+  G  D  IK+ +L       +  GH K++  I+F+ DG+ + S
Sbjct: 961  EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020

Query: 160  GGEDGVVRI 168
              ED V+++
Sbjct: 1021 SSEDSVIQV 1029



 Score = 33.1 bits (74), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAG 76
           V C +      +++    +  KV L+ +  S  +  + +GH + ++   F   +      
Sbjct: 801 VKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858

Query: 77  CQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
                +++WN+          GH S +  V F P G    + S D  I++W+ ++
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913



 Score = 32.7 bits (73), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 37   DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
            D  V +W +         + H   V S    +     S+     + KIW+  + +    L
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123

Query: 97   NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTY---------RGHSKSINS 147
             GH   +    F   G  L +G  +  I++W++     +++            H   +  
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183

Query: 148  IRFSPDGQWIASGG 161
            + FSPD + + S G
Sbjct: 1184 VCFSPDSKTLVSAG 1197


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 22  ALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGS 81
           A   + GQ +A+ G DK + ++       ++ +  H   V    F   +  ++       
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686

Query: 82  IKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL--CSGSLDSFIKLWDLRRKGCIYTYR 139
           +KIWN     +  T + H   +    F     +L   +GS D F+KLWDL +K C  T  
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF 746

Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           GH+ S+N  RFSPD + +AS   DG +++
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKL 775



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)

Query: 29   QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLA 88
            + L +  DD ++ +W      CI  L GH   V+  +       LS     G++K+WN+ 
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSF-DGTVKVWNII 1079

Query: 89   VPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSI 148
                ++    H+ ++ S D         S S D   K+W       ++  RGH+  +   
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139

Query: 149  RFSPDGQWIASGGEDGVVRI-----GASFHLT 175
             FS D   +A+G ++G +RI     G   HL 
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171



 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 56/219 (25%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVL-ATGGDDKKVNLWALGKSNCIMSLSGHSTPVESV 64
           E    +  H   VNC      S  +L ATG  D  + LW L +  C  ++ GH+  V   
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755

Query: 65  QFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLN--------------------------- 97
           +F   ++ L++    G++K+W+      ++++N                           
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSAD 815

Query: 98  ------GHKSSITSVDFHPYG---------------------DYLCSGSLDSF-IKLWDL 129
                   K+ I   D H  G                     ++L   +L  + ++LW+ 
Sbjct: 816 GARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT 875

Query: 130 RRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             +  +   RGH   ++ + FSPDG    +  +D  +R+
Sbjct: 876 DSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 11/170 (6%)

Query: 7    KAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQF 66
            K +DF+ H  +V    +   + +  +T  D K   +W+      +  L GH+  V    F
Sbjct: 1083 KEKDFVCHQGTVLSCDISHDATKFSSTSAD-KTAKIWSFDLLLPLHELRGHNGCVRCSAF 1141

Query: 67   GNGEETLSAGCQSGSIKIWN--------LAVPTVQRTLNGHKSSITSVDFHPYGDYLCSG 118
                  L+ G  +G I+IWN        L  P  +     H   +T + F P G  L S 
Sbjct: 1142 SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201

Query: 119  SLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                +IK W++       T+  +  ++  I  SPD +   +    G++ I
Sbjct: 1202 G--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYI 1249



 Score = 33.9 bits (76), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 4    KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            +++K      H  +V    L K S   L +   D  V +W +   N       H   V S
Sbjct: 1039 QLDKCIFLRGHQETVKDFRLLKNSR--LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLS 1096

Query: 64   VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
                +     S+     + KIW+  +      L GH   +    F      L +G  +  
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156

Query: 124  IKLWDLRRKGCIYTY--------RGHSKSINSIRFSPDGQWIASGG 161
            I++W++     ++            H   +  + FSPDG+ + S G
Sbjct: 1157 IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202



 Score = 32.7 bits (73), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-SGHSTPVESVQFGNGEETLSAG 76
           V C +      +++    +  K+ L+ +  S  +  + +GH + ++   F          
Sbjct: 807 VKCCSWSADGARIMVAAKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864

Query: 77  CQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
                +++WN    +      GH S +  V F P G    + S D  I+LW+ ++
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919


>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
 pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
          Length = 354

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 9   EDFMAHGASVNCLALG-KKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG 67
           + F  HGA V CL L   ++G    +GG DKK  +W +    C+ +   H + V SV++ 
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY 249

Query: 68  NGEETLSAGCQSGSIKIWNL------AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLD 121
              +  ++G    + ++++L      A+ + +  + G     +SVDF   G  L +G  D
Sbjct: 250 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG----ASSVDFSLSGRLLFAGYND 305

Query: 122 SFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGA 170
             I +WD+ +   +    GH   ++++R SPDG    SG  D  +R+ A
Sbjct: 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 27  SGQVLATGGDDKKVNLWALG-KSNCIM-----SLSGHSTPVESVQFGNGEETLSAGCQSG 80
           SG  +A GG D K +++ L    N  M     S++ H+  + +  F N +  +      G
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHP--YGDYLCSGSLDSFIKLWDLRRKGCIYTY 138
           +  +W++    + ++ +GH + +  +D  P   G+   SG  D    +WD+R   C+  +
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             H   +NS+R+ P G   ASG +D   R+
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRL 266


>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
 pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
 pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
          Length = 445

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E       H ++V C+ L +K    + +G  D  + +W +    C+  L GH   V  VQ
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246

Query: 66  FGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
           + +G   +S G     +K+W+    T   TL GH + + S+ F   G ++ SGSLD+ I+
Sbjct: 247 Y-DGRRVVS-GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIR 302

Query: 126 LWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           +WD+    CI+T  GH    + +    +   + SG  D  V+I
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKI 343



 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 86/161 (53%), Gaps = 12/161 (7%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
            M H A+V C+   +  G+ + +G  D  V +W      C+ +L GH+  V S+QF +G 
Sbjct: 235 LMGHVAAVRCV---QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGI 290

Query: 71  ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
             +S G    SI++W++       TL GH+S  + ++     + L SG+ DS +K+WD++
Sbjct: 291 HVVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIK 347

Query: 131 RKGCIYTYRG---HSKSINSIRFSPDGQWIASGGEDGVVRI 168
              C+ T +G   H  ++  ++F+ +  ++ +  +DG V++
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKL 386



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 30  VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAV 89
           ++ +G  D+ + +W      CI +L GH++ V  +     E+ + +G +  ++++W++  
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET 228

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIR 149
                 L GH +++  V +   G  + SG+ D  +K+WD   + C++T +GH+  + S++
Sbjct: 229 GQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286

Query: 150 FSPDGQWIASGGEDGVVRI 168
           F  DG  + SG  D  +R+
Sbjct: 287 F--DGIHVVSGSLDTSIRV 303



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGC 77
           + CL      G  + +G DD  + +W+     C+ +L GH+  V S Q    +  + +G 
Sbjct: 122 ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGS 176

Query: 78  QSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYT 137
              ++K+WN        TL GH S++  +  H     + SGS D+ +++WD+    C++ 
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHV 234

Query: 138 YRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             GH  ++  +++  DG+ + SG  D +V++
Sbjct: 235 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 7/103 (6%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP 90
           + +G  D  + +W +   NCI +L+GH +    ++    +  L +G    ++KIW++   
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG 349

Query: 91  TVQRTLNG---HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
              +TL G   H+S++T + F+   +++ + S D  +KLWDL+
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK 390


>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
           Trypanosoma Brucei Ribosome
          Length = 318

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H A V+ +AL   +G    +   D  + LW L    C     GH+  V SV F      +
Sbjct: 66  HSAFVSDVAL-SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNG-HKSSITSVDFHPYGD--YLCSGSLDSFIKLWDLR 130
            +G +  ++++WN+    +     G H   ++ V F P  D   + SG  D+ +K+WDL 
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184

Query: 131 RKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
               +   +GH+  + S+  SPDG   AS  +DGV R+
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222



 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 18/228 (7%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS--GHSTPVESVQFGN 68
           F+ H   V  +A    + Q++ +GG D  + +W + K  C+ +LS   H+  V  V+F  
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162

Query: 69  GEE--TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
             +   + +G     +K+W+LA   +   L GH + +TSV   P G    S   D   +L
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222

Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSL 186
           WDL  KG   +       IN I FSP+  W+ +  E G +RI   F L N  I +V+L+ 
Sbjct: 223 WDL-TKGEALSEMAAGAPINQICFSPNRYWMCAATEKG-IRI---FDLENKDI-IVELAP 276

Query: 187 VHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENA 234
            H           S+ +S + S   S      G T   I V  + ENA
Sbjct: 277 EHQGSKKIVPECVSIAWSADGSTLYS------GYTDNVIRVWGVSENA 318



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 94  RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPD 153
           R L GH + ++ V     G++  S S D  ++LW+L+   C Y + GH+K + S+ FSPD
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120

Query: 154 GQWIASGGEDGVVRI----GASFHLTNTSIHVVDLSLV 187
            + I SGG D  +R+    G   H  +   H   +S V
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCV 158



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 54  LSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD 113
           L GHS  V  V   N      +     S+++WNL     Q    GH   + SV F P   
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122

Query: 114 YLCSGSLDSFIKLWDLRRKGCIYTY-RG-HSKSINSIRFSP--DGQWIASGGEDGVVRI 168
            + SG  D+ +++W+++ + C++T  RG H+  ++ +RFSP  D   I SGG D +V++
Sbjct: 123 QIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180


>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The First 80s In The Asymmetric Unit.
 pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The Second 80s In The Asymmetric Unit.
 pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome A
 pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome B
          Length = 319

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 98  ETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 155

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K  +YT     + + S+ FSP+  W+A+    G+
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGI 260



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TL 144

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 205 SPDGTLIASAGKDGEIML 222



 Score = 39.7 bits (91), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 53  SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQRTLNGHKSSIT 104
           +L GH+  V S+    G+   L +  +  ++  W L        VP   R+  GH   + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQ 69

Query: 105 SVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDG 164
                  G Y  S S D  ++LWD+        + GH   + S+        I SG  D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129

Query: 165 VVRI 168
            +++
Sbjct: 130 TIKV 133


>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
           Destruction Motif Binding And Lysine Specificity On The
           Scfbeta-Trcp1 Ubiquitin Ligase
          Length = 435

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)

Query: 5   VEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESV 64
           +E       H  SV CL   ++   V+ TG  D  V +W +     + +L  H   V  +
Sbjct: 163 LECKRILTGHTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219

Query: 65  QFGNGEETLSAGCQSGSIKIWNLAVP---TVQRTLNGHKSSITSVDFH------------ 109
           +F NG   +    +  SI +W++A P   T++R L GH++++  VDF             
Sbjct: 220 RFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 277

Query: 110 -------------------------PYGDYL-CSGSLDSFIKLWDLRRKGCIYTYRGHSK 143
                                     Y D L  SGS D+ I+LWD+    C+    GH +
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337

Query: 144 SINSIRFSPDGQWIASGGEDGVVRI 168
            +  IRF  D + I SG  DG +++
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKV 360



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
            + H A+VN +    K    + +   D+ + +W       + +L+GH   +  +Q+   +
Sbjct: 252 LVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D 306

Query: 71  ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
             + +G    +I++W++      R L GH+  +  + F      + SG+ D  IK+WDL 
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLV 364

Query: 131 RK---------GCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVV 166
                       C+ T   HS  +  ++F  + Q ++S  +D ++
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTIL 408



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   + CL   +   +++ +G  D  + LW +    C+  L GH   V  ++F N  + +
Sbjct: 295 HKRGIACL---QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRI 349

Query: 74  SAGCQSGSIKIWNLAVP---------TVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFI 124
            +G   G IK+W+L               RTL  H   +  + F  +   + S S D  I
Sbjct: 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTI 407

Query: 125 KLWDL 129
            +WD 
Sbjct: 408 LIWDF 412



 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 43  WALGKSNC--IMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHK 100
           W  G+ +   I   S  S  V  +Q+   ++ + +G +  +IKIW+      +R L GH 
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHT 173

Query: 101 SSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
            S+  + +      + +GS DS +++WD+     + T   H +++  +RF+
Sbjct: 174 GSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222


>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
           Cryo-em Map Of Yeast 80s Ribosome
          Length = 314

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 98  ETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 155

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K  +YT     + + S+ FSP+  W+A+    G+
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGI 260



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TL 144

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 205 SPDGTLIASAGKDGEIML 222



 Score = 39.7 bits (91), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 53  SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQRTLNGHKSSIT 104
           +L GH+  V S+    G+   L +  +  ++  W L        VP   R+  GH   + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQ 69

Query: 105 SVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDG 164
                  G Y  S S D  ++LWD+        + GH   + S+        I SG  D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129

Query: 165 VVRI 168
            +++
Sbjct: 130 TIKV 133


>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
           EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
           Lanuginosus Ribosome At 8.9a Resolution
          Length = 313

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 92  ETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 149

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 209

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K  +YT     + + S+ FSP+  W+A+    G+
Sbjct: 210 KDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGI 254



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 80  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TL 138

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 198

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 199 SPDGTLIASAGKDGEIML 216



 Score = 39.7 bits (91), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 53  SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQRTLNGHKSSIT 104
           +L GH+  V S+    G+   L +  +  ++  W L        VP   R+  GH   + 
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQ 63

Query: 105 SVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDG 164
                  G Y  S S D  ++LWD+        + GH   + S+        I SG  D 
Sbjct: 64  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123

Query: 165 VVRI 168
            +++
Sbjct: 124 TIKV 127


>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
 pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
          Length = 319

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 98  ETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 155

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K  +YT     + + S+ FSP+  W+A+    G+
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGI 260



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TL 144

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 205 SPDGTLIASAGKDGEIML 222



 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 14/135 (10%)

Query: 46  GKSNCIM----SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQ 93
           G SN ++    +L GH+  V S+    G+   L +  +  ++  W L        VP   
Sbjct: 1   GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-- 58

Query: 94  RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPD 153
           R+  GH   +        G Y  S S D  ++LWD+        + GH   + S+     
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118

Query: 154 GQWIASGGEDGVVRI 168
              I SG  D  +++
Sbjct: 119 ASMIISGSRDKTIKV 133


>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
          Length = 319

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 98  ETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 155

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K  +YT     + + S+ FSP+  W+A+    G+
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGI 260



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TL 144

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 205 SPDGTLIASAGKDGEIML 222



 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 14/135 (10%)

Query: 46  GKSNCIM----SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQ 93
           G SN ++    +L GH+  V S+    G+   L +  +  ++  W L        VP   
Sbjct: 1   GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-- 58

Query: 94  RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPD 153
           R+  GH   +        G Y  S S D  ++LWD+        + GH   + S+     
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118

Query: 154 GQWIASGGEDGVVRI 168
              I SG  D  +++
Sbjct: 119 ASMIISGSRDKTIKV 133


>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
          Length = 319

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 6   EKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQ 65
           E  + F+ H + V  + + KK+  ++ +G  DK + +W + K  C+ +L GH+  V  V+
Sbjct: 98  ETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVR 155

Query: 66  FGNGEE------TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS 119
               E+      T+ +      +K WNL    ++    GH S+I ++   P G  + S  
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215

Query: 120 LDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
            D  I LW+L  K   YT     + + S+ FSP+  W+A+    G+
Sbjct: 216 KDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAAATATGI 260



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 37  DKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL 96
           DK + LW +          GH + V SV        + +G +  +IK+W +    +  TL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-TL 144

Query: 97  NGHKSSITSVDFHPYGDY------LCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRF 150
            GH   ++ V   P          + S   D  +K W+L +      + GH+ +IN++  
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204

Query: 151 SPDGQWIASGGEDGVVRI 168
           SPDG  IAS G+DG + +
Sbjct: 205 SPDGTLIASAGKDGEIXL 222



 Score = 39.3 bits (90), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 53  SLSGHSTPVESVQFGNGE-ETLSAGCQSGSIKIWNL-------AVPTVQRTLNGHKSSIT 104
           +L GH+  V S+    G+   L +  +  ++  W L        VP   R+  GH   + 
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQ 69

Query: 105 SVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDG 164
                  G Y  S S D  ++LWD+        + GH   + S+        I SG  D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129

Query: 165 VVRI 168
            +++
Sbjct: 130 TIKV 133


>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
          Length = 321

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 75/141 (53%)

Query: 28  GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
           G+ LA+G  D  +N++ +     + +L GH+ P+ S+ F    + L      G IKI+++
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

Query: 88  AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINS 147
               +  TL+GH S + +V F P   +  S S D  +K+WD+  + C++T+  H   +  
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295

Query: 148 IRFSPDGQWIASGGEDGVVRI 168
           ++++ +G  I S G+D  + I
Sbjct: 296 VKYNGNGSKIVSVGDDQEIHI 316



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%)

Query: 30  VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAV 89
           + A+   D  + LW L     I S+        ++ F    + L+ G   G + I+ +  
Sbjct: 94  IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIR 149
              + +L+     I S+ + P G YL SG++D  I ++D+     ++T  GH+  I S+ 
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213

Query: 150 FSPDGQWIASGGEDGVVRI 168
           FSPD Q + +  +DG ++I
Sbjct: 214 FSPDSQLLVTASDDGYIKI 232



 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%)

Query: 29  QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLA 88
           Q LATG    KVN++ +       SL      + S+ +    + L++G   G I I+++A
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194

Query: 89  VPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSI 148
              +  TL GH   I S+ F P    L + S D +IK++D++      T  GH+  + ++
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254

Query: 149 RFSPD 153
            F PD
Sbjct: 255 AFCPD 259



 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 13  AHGASVNCLALG---KKSGQVLATGGDDKKVNLWAL--GKSNCIMSLSGHSTPVESVQFG 67
           AH  ++  +A G   K++ + + TG  D  V +W     + +   SL GH   V SV   
Sbjct: 30  AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89

Query: 68  NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
           +     ++      I++W+L      ++++       ++ F P   YL +G+    + ++
Sbjct: 90  HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149

Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            +      Y+     K I SI +SPDG+++ASG  DG++ I
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI 190



 Score = 37.7 bits (86), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
            H   +  L     S Q+L T  DD  + ++ +  +N   +LSGH++ V +V F   +  
Sbjct: 204 GHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
             +     S+K+W++   T   T   H+  +  V ++  G  + S   D  I ++D
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318


>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
          Length = 393

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 17  SVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTP---------------- 60
           SV C       G+ LATG + K   ++ +   + +  LS  S                  
Sbjct: 65  SVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123

Query: 61  --VESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSG 118
             + SV F    + L+ G +   I+IW++    +   L GH+  I S+D+ P GD L SG
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183

Query: 119 SLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP-DGQWIASGGEDGVVRI 168
           S D  +++WDLR   C  T       + ++  SP DG++IA+G  D  VR+
Sbjct: 184 SGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 21/157 (13%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           SG  L +G  D+ V +W L    C ++LS        +V  G+G+  ++AG    ++++W
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVW 234

Query: 86  NLAVPTVQRTLN-------GHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG----- 133
           +     +   L+       GHK S+ SV F   G  + SGSLD  +KLW+L+        
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294

Query: 134 -------CIYTYRGHSKSINSIRFSPDGQWIASGGED 163
                  C  TY GH   + S+  + + ++I SG +D
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 19/130 (14%)

Query: 57  HSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSS-------------- 102
           H++ V  V+F N  E L+ GC   + +++ ++  ++   L+   ++              
Sbjct: 63  HTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121

Query: 103 ----ITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIA 158
               I SV F P G +L +G+ D  I++WD+  +  +   +GH + I S+ + P G  + 
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181

Query: 159 SGGEDGVVRI 168
           SG  D  VRI
Sbjct: 182 SGSGDRTVRI 191



 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 25/176 (14%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL-------SGHSTPVESVQFGNGE 70
           V  +A+    G+ +A G  D+ V +W       +  L       +GH   V SV F    
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268

Query: 71  ETLSAGCQSGSIKIWNLAVP------------TVQRTLNGHKSSITSVDFHPYGDYLCSG 118
           +++ +G    S+K+WNL               T + T  GHK  + SV      +Y+ SG
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328

Query: 119 SLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS------PDGQWIASGGEDGVVRI 168
           S D  +  WD +    +   +GH  S+ S+  +      P+    A+G  D   RI
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384


>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
          Length = 694

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 141/368 (38%), Gaps = 88/368 (23%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSN-----CIMSLSGHSTPVESVQFG 67
           AH   V  +A    +  ++ +   DK + LW L K +         L+GHS  VE V   
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439

Query: 68  NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
           +  +   +G   G +++W+LA     R   GH   + SV F      + S S D  IKLW
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499

Query: 128 DLRRKGCIYTY----RGHSKSINSIRFSPDGQW--IASGGEDGVVRIGASFHLTNTSIHV 181
           +   + C YT      GH   ++ +RFSP+     I S   D  V++   ++L+N  +  
Sbjct: 500 NTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV---WNLSNCKLRS 555

Query: 182 VDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAG 241
              +L    G     Y S+V  S + SL  S      GG    + +  + E         
Sbjct: 556 ---TLAGHTG-----YVSTVAVSPDGSLCAS------GGKDGVVLLWDLAEG-------- 593

Query: 242 EEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSAD 301
            ++L++  AN   ++  F P+R                          LC      ++ +
Sbjct: 594 -KKLYSLEANSVIHALCFSPNRY------------------------WLC------AATE 622

Query: 302 RTVNFWDLEKFSLV-------------------STTEKNSSTIRRLTFSEGGECLLGGDT 342
             +  WDLE  S+V                   + T++       L +S  G  L  G T
Sbjct: 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682

Query: 343 EG-LKVYG 349
           +G ++V+G
Sbjct: 683 DGVIRVWG 690


>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
 pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
 pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
          Length = 340

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 28  GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN- 86
           GQ   +G  D  + LW L          GH+  V SV F +    + +G +  +IK+WN 
Sbjct: 98  GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGD--YLCSGSLDSFIKLWDLRRKGCIYTYRGHSKS 144
           L V         H   ++ V F P      + S   D  +K+W+L        + GH+  
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217

Query: 145 INSIRFSPDGQWIASGGEDG 164
           +N++  SPDG   ASGG+DG
Sbjct: 218 LNTVTVSPDGSLCASGGKDG 237



 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM-----SLSGHSTPVESVQFG 67
            H   V  +A   +   ++ +   DK + +W L +          +L GHS  V  V   
Sbjct: 36  GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95

Query: 68  NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
           +  +   +G   G++++W+L   T  R   GH   + SV F      + SGS D  IKLW
Sbjct: 96  SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155

Query: 128 DLRRKGCIYTYR--GHSKSINSIRFSPDGQ--WIASGGEDGVVRI 168
           +     C YT +   HS+ ++ +RFSP+     I S G D +V++
Sbjct: 156 NTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLW-ALGKSNCIMSLSGHSTPVESVQFG-N 68
           F+ H   V  +A    + Q+++ G  DK + LW  LG     +    HS  V  V+F  N
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182

Query: 69  GEETLSAGC-QSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
               +   C     +K+WNLA   ++    GH   + +V   P G    SG  D    LW
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASG 160
           DL     +YT  G    IN++ FSP+  W+ + 
Sbjct: 243 DLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 274



 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 12/166 (7%)

Query: 13  AHGASVNCLALGKKSGQ-VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEE 71
           +H   V+C+     S   ++ + G DK V +W L       +  GH+  + +V       
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228

Query: 72  TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
             ++G + G   +W+L       TL+G    I ++ F P   +LC+ +  S IK+WDL  
Sbjct: 229 LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPS-IKIWDLEG 286

Query: 132 KGCI---------YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           K  +          + +       S+ +S DGQ + +G  D +VR+
Sbjct: 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332


>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 380

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 19/159 (11%)

Query: 27  SGQVLATGGDDKKVNLWAL-------GKSNCIMSLSGHSTPVESVQFGNGEET-LSAGCQ 78
           +GQ +A GG D   +++ L       G       L+GH     S Q+   +ET L  G  
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178

Query: 79  SGSIKIWNLAVPTVQRTL-------NGHKSSITSVDFHPY-GDYLCSGSLDSFIKLWDLR 130
             +  +W+  V T QR         +GH + + S+  +    +   SGS D+ ++LWDLR
Sbjct: 179 DQTCVLWD--VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236

Query: 131 -RKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                + TY GH   INS++F PDGQ   +G +DG  R+
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 31  LATGGDDKKVNLWALGKSNCIMSL-----SGHSTPVESVQFG--NGEETLSAGCQSGSIK 83
           L TG  D+   LW +     I        SGH+  V S+     N    +S  C + +++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-TVR 231

Query: 84  IWNLAVPT-VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
           +W+L + +   RT +GH+  I SV F P G    +GS D   +L+D+R    +  Y    
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291

Query: 143 KS-------INSIRFSPDGQWIASGGEDG 164
                    + S+ FS  G+ + +G  +G
Sbjct: 292 DRNDNELPIVTSVAFSISGRLLFAGYSNG 320



 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%)

Query: 94  RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPD 153
           RTL GH   + S+D+ P  +++ S S D  + +W+       +  + H   +    F+P+
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119

Query: 154 GQWIASGGEDGVVRI 168
           GQ +A GG D    I
Sbjct: 120 GQSVACGGLDSACSI 134



 Score = 38.9 bits (89), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFH 109
           C  +L GHS  V S+ +   +  + +  Q G + +WN         +  H   +    F 
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117

Query: 110 PYGDYLCSGSLDSFIKLWDLR----RKGCIYTYR---GHSKSINSIRFSPD 153
           P G  +  G LDS   +++L     R G +   R   GH    +S ++ PD
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168



 Score = 35.4 bits (80), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 21/156 (13%)

Query: 1   MRAKVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM------SL 54
           +R        +  H   +N +      GQ   TG DD    L+ +   + +         
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKF-FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293

Query: 55  SGHSTP-VESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL----NGHKSSITSVDFH 109
           + +  P V SV F      L AG  +G   +W+  +  +   L    N H+  I+ +   
Sbjct: 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353

Query: 110 PYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
             G  LC+GS D  +K+W          + GH K +
Sbjct: 354 SDGSALCTGSWDKNLKIW---------AFSGHRKIV 380



 Score = 34.7 bits (78), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 23/247 (9%)

Query: 134 CIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTP 193
           C  T +GHS  + S+ ++P+  WI S  +DG  R+     LT+   H + L     +   
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDG--RLIVWNALTSQKTHAIKLHCPWVMECA 115

Query: 194 PPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRI---EENAESEDQAGEEELFATIA 250
                 SV      S    F           + V+R+    +   S  Q   ++    I 
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175

Query: 251 NPCDYSAIFQPHRSLNRS---GTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFW 307
              D + +     +  R    G+  P   +   LS+   S  L   +  S S D TV  W
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS--LNANMFISGSCDTTVRLW 233

Query: 308 DLEKFS-LVSTTEKNSSTIRRLTF----------SEGGECLLGGDTEG--LKVYGWEPAR 354
           DL   S  V T   +   I  + F          S+ G C L     G  L+VY  EP R
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293

Query: 355 QYDAQPM 361
             +  P+
Sbjct: 294 NDNELPI 300


>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
           80s Complex Obtained By Docking Homology Models Of The
           Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 317

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 28  GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN- 86
           GQ   +G  D  + LW L          GH+  V SV F +    + +G +  +IK+WN 
Sbjct: 75  GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGD--YLCSGSLDSFIKLWDLRRKGCIYTYRGHSKS 144
           L V         H   ++ V F P      + S   D  +K+W+L        + GH+  
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194

Query: 145 INSIRFSPDGQWIASGGEDG 164
           +N++  SPDG   ASGG+DG
Sbjct: 195 LNTVTVSPDGSLCASGGKDG 214



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM-----SLSGHSTPVESVQFG 67
            H   V  +A   +   ++ +   DK + +W L +          +L GHS  V  V   
Sbjct: 13  GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72

Query: 68  NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
           +  +   +G   G++++W+L   T  R   GH   + SV F      + SGS D  IKLW
Sbjct: 73  SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132

Query: 128 DLRRKGCIYTYR--GHSKSINSIRFSPDGQ--WIASGGEDGVVRI 168
           +     C YT +   HS+ ++ +RFSP+     I S G D +V++
Sbjct: 133 NTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLW-ALGKSNCIMSLSGHSTPVESVQFG-N 68
           F+ H   V  +A    + Q+++ G  DK + LW  LG     +    HS  V  V+F  N
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 159

Query: 69  GEETLSAGC-QSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
               +   C     +K+WNLA   ++    GH   + +V   P G    SG  D    LW
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASG 160
           DL     +YT  G    IN++ FSP+  W+ + 
Sbjct: 220 DLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 251



 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 12/166 (7%)

Query: 13  AHGASVNCLALGKKSGQ-VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEE 71
           +H   V+C+     S   ++ + G DK V +W L       +  GH+  + +V       
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205

Query: 72  TLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
             ++G + G   +W+L       TL+G    I ++ F P   +LC+ +  S IK+WDL  
Sbjct: 206 LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPS-IKIWDLEG 263

Query: 132 KGCI---------YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           K  +          + +       S+ +S DGQ + +G  D +VR+
Sbjct: 264 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309


>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 351

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 27  SGQVLATGGDDKKVNLWAL----GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSI 82
           SG  +A GG D   +++ L    G       L+GH+  +   +F +  + +++   + + 
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TC 177

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
            +W++       T  GH   + S+   P      SG+ D+  KLWD+R   C  T+ GH 
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
             IN+I F P+G   A+G +D   R+
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRL 263



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            V  + +   H   ++C      +  V ++G  D    LW +       + +GH+  V S
Sbjct: 143 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMS 200

Query: 64  VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
           +          +G    S K+W++     ++T  GH+S I ++ F P G+   +GS D+ 
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260

Query: 124 IKLWDLRRKGCIYTYRGHSK---SINSIRFSPDGQWIASGGED 163
            +L+DLR    + TY  H      I S+ FS  G+ + +G +D
Sbjct: 261 CRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDD 302



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +L GH   + ++ +G     L +  Q G + IW+         +    S + +  + P G
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120

Query: 113 DYLCSGSLDSFIKLWDLR-RKGCIYTYR---GHSKSINSIRFSPDGQWIASGGE 162
           +Y+  G LD+   +++L+ R+G +   R   GH+  ++  RF  D Q + S G+
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 174



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V  L+L   + ++  +G  D    LW + +  C  + +GH + + ++ F       
Sbjct: 194 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNGHK--SSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + G    + ++++L       T +       ITSV F   G  L +G  D    +WD  +
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312

Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                   GH   ++ +  + DG  +A+G  D  ++I
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS--TPVESVQF 66
           + F  H + +N +     +G   ATG DD    L+ L     +M+ S  +    + SV F
Sbjct: 231 QTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 289

Query: 67  GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
                 L AG    +  +W+         L GH + ++ +     G  + +GS DSF+K+
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349

Query: 127 WD 128
           W+
Sbjct: 350 WN 351



 Score = 36.2 bits (82), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 93  QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           +RTL GH + I ++ +      L S S D  + +WD      ++     S  + +  ++P
Sbjct: 59  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118

Query: 153 DGQWIASGGEDGVVRI 168
            G ++A GG D +  I
Sbjct: 119 SGNYVACGGLDNICSI 134


>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
           The Gt-Beta-Gamma Subunits
 pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
 pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin
 pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin Beta-Gamma
          Length = 340

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 27  SGQVLATGGDDKKVNLWAL----GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSI 82
           SG  +A GG D   +++ L    G       L+GH+  +   +F +  + +++   + + 
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TC 166

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
            +W++       T  GH   + S+   P      SG+ D+  KLWD+R   C  T+ GH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
             IN+I F P+G   A+G +D   R+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRL 252



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            V  + +   H   ++C      +  V ++G  D    LW +       + +GH+  V S
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 64  VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
           +          +G    S K+W++     ++T  GH+S I ++ F P G+   +GS D+ 
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 124 IKLWDLRRKGCIYTYRGHSK---SINSIRFSPDGQWIASGGED 163
            +L+DLR    + TY  H      I S+ FS  G+ + +G +D
Sbjct: 250 CRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDD 291



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +L GH   + ++ +G     L +  Q G + IW+         +    S + +  + P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 113 DYLCSGSLDSFIKLWDLR-RKGCIYTYR---GHSKSINSIRFSPDGQWIASGGE 162
           +Y+  G LD+   +++L+ R+G +   R   GH+  ++  RF  D Q + S G+
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V  L+L   + ++  +G  D    LW + +  C  + +GH + + ++ F       
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNGHK--SSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + G    + ++++L       T +       ITSV F   G  L +G  D    +WD  +
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                   GH   ++ +  + DG  +A+G  D  ++I
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS--TPVESVQF 66
           + F  H + +N +     +G   ATG DD    L+ L     +M+ S  +    + SV F
Sbjct: 220 QTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 67  GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
                 L AG    +  +W+         L GH + ++ +     G  + +GS DSF+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 127 WD 128
           W+
Sbjct: 339 WN 340



 Score = 35.8 bits (81), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 93  QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           +RTL GH + I ++ +      L S S D  + +WD      ++     S  + +  ++P
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 153 DGQWIASGGEDGVVRI 168
            G ++A GG D +  I
Sbjct: 108 SGNYVACGGLDNICSI 123


>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
           Gamma_2 With Gdp Bound
 pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
           Bound
 pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
           Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
           And Gamma 2 Subunits
 pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
           (Sigk) Bound To A G Protein Beta:gamma Heterodimer
 pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
 pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Soak)
 pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Co-Crystal)
 pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
           In Complex With An Inhibitor Ym-254890
 pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
 pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd101)
 pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd103a)
 pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
           Protein-Coupled Receptor Kinase 2-Heterotrimeric G
           Protein Beta 1 And Gamma 2 Subunit Complex
 pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
           Soluble Gbetagamma Subunits And Paroxetine
          Length = 340

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 27  SGQVLATGGDDKKVNLWAL----GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSI 82
           SG  +A GG D   +++ L    G       L+GH+  +   +F +  + +++   + + 
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TC 166

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
            +W++       T  GH   + S+   P      SG+ D+  KLWD+R   C  T+ GH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
             IN+I F P+G   A+G +D   R+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRL 252



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            V  + +   H   ++C      +  V ++G  D    LW +       + +GH+  V S
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 64  VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
           +          +G    S K+W++     ++T  GH+S I ++ F P G+   +GS D+ 
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 124 IKLWDLRRKGCIYTYRGHSK---SINSIRFSPDGQWIASGGED 163
            +L+DLR    + TY  H      I S+ FS  G+ + +G +D
Sbjct: 250 CRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDD 291



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +L GH   + ++ +G     L +  Q G + IW+         +    S + +  + P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 113 DYLCSGSLDSFIKLWDLR-RKGCIYTYR---GHSKSINSIRFSPDGQWIASGGE 162
           +Y+  G LD+   +++L+ R+G +   R   GH+  ++  RF  D Q + S G+
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V  L+L   + ++  +G  D    LW + +  C  + +GH + + ++ F       
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNGHK--SSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + G    + ++++L       T +       ITSV F   G  L +G  D    +WD  +
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                   GH   ++ +  + DG  +A+G  D  ++I
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS--TPVESVQF 66
           + F  H + +N +     +G   ATG DD    L+ L     +M+ S  +    + SV F
Sbjct: 220 QTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 67  GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
                 L AG    +  +W+         L GH + ++ +     G  + +GS DSF+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 127 WD 128
           W+
Sbjct: 339 WN 340



 Score = 35.8 bits (81), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 93  QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           +RTL GH + I ++ +      L S S D  + +WD      ++     S  + +  ++P
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 153 DGQWIASGGEDGVVRI 168
            G ++A GG D +  I
Sbjct: 108 SGNYVACGGLDNICSI 123


>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
          Length = 340

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 27  SGQVLATGGDDKKVNLWAL----GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSI 82
           SG  +A GG D   +++ L    G       L+GH+  +   +F +  + +++   + + 
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TC 166

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
            +W++       T  GH   + S+   P      SG+ D+  KLWD+R   C  T+ GH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
             IN+I F P+G   A+G +D   R+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRL 252



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            V  + +   H   ++C      +  V ++G  D    LW +       + +GH+  V S
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 64  VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
           +          +G    S K+W++     ++T  GH+S I ++ F P G+   +GS D+ 
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 124 IKLWDLRRKGCIYTYRGHSK---SINSIRFSPDGQWIASGGED 163
            +L+DLR    + TY  H      I S+ FS  G+ + +G +D
Sbjct: 250 CRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDD 291



 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +L GH   + ++ +G     L +  Q G + IW+         +    S + +  + P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 113 DYLCSGSLDSFIKLWDLR-RKGCIYTYR---GHSKSINSIRFSPDGQWIASGGE 162
           +Y+  G LD+   +++L+ R+G +   R   GH+  ++  RF  D Q + S G+
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V  L+L   + ++  +G  D    LW + +  C  + +GH + + ++ F       
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNGHK--SSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + G    + ++++L       T +       ITSV F   G  L +G  D    +WD  +
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                   GH   ++ +  + DG  +A+G  D  ++I
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS--TPVESVQF 66
           + F  H + +N +     +G   ATG DD    L+ L     +M+ S  +    + SV F
Sbjct: 220 QTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 67  GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
                 L AG    +  +W+         L GH + ++ +     G  + +GS DSF+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 127 WD 128
           W+
Sbjct: 339 WN 340



 Score = 35.8 bits (81), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 93  QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           +RTL GH + I ++ +      L S S D  + +WD      ++     S  + +  ++P
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 153 DGQWIASGGEDGVVRI 168
            G ++A GG D +  I
Sbjct: 108 SGNYVACGGLDNICSI 123


>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
           In Complex With Galpha-q And Gbetagamma Subunits
          Length = 340

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 27  SGQVLATGGDDKKVNLWAL----GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSI 82
           SG  +A GG D   +++ L    G       L+GH+  +   +F +  + +++   + + 
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TC 166

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
            +W++       T  GH   + S+   P      SG+ D+  KLWD+R   C  T+ GH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
             IN+I F P+G   A+G +D   R+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRL 252



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 4   KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVES 63
            V  + +   H   ++C      +  V ++G  D    LW +       + +GH+  V S
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 64  VQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSF 123
           +          +G    S K+W++     ++T  GH+S I ++ F P G+   +GS D+ 
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 124 IKLWDLRRKGCIYTYRGHSK---SINSIRFSPDGQWIASGGED 163
            +L+DLR    + TY  H      I S+ FS  G+ + +G +D
Sbjct: 250 CRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDD 291



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
           +L GH   + ++ +G     L +  Q G + IW+         +    S + +  + P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 113 DYLCSGSLDSFIKLWDLR-RKGCIYTYR---GHSKSINSIRFSPDGQWIASGGE 162
           +Y+  G LD+   +++L+ R+G +   R   GH+  ++  RF  D Q + S G+
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163



 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
           H   V  L+L   + ++  +G  D    LW + +  C  + +GH + + ++ F       
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 74  SAGCQSGSIKIWNLAVPTVQRTLNGHK--SSITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
           + G    + ++++L       T +       ITSV F   G  L +G  D    +WD  +
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
                   GH   ++ +  + DG  +A+G  D  ++I
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 9   EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS--TPVESVQF 66
           + F  H + +N +     +G   ATG DD    L+ L     +M+ S  +    + SV F
Sbjct: 220 QTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 67  GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKL 126
                 L AG    +  +W+         L GH + ++ +     G  + +GS DSF+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 127 WD 128
           W+
Sbjct: 339 WN 340



 Score = 35.8 bits (81), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 93  QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           +RTL GH + I ++ +      L S S D  + +WD      ++     S  + +  ++P
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 153 DGQWIASGGEDGVVRI 168
            G ++A GG D +  I
Sbjct: 108 SGNYVACGGLDNICSI 123


>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
          Length = 345

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 28  GQVLATGGDDKKVNLWALGKSN--CIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           G  LA+   D    +W   + +  C+ +L GH   V+SV +      L+   +  S+ +W
Sbjct: 73  GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132

Query: 86  NLAVP---TVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG--CIYTYRG 140
            +           LN H   +  V +HP  + L S S D  +KL+        C  T  G
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192

Query: 141 HSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
           H  ++ S+ F P GQ +AS  +D  VRI   +
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224



 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 27  SGQVLATGGDDKKVNLWALGKSN---CIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIK 83
           SG +LAT   DK V +W + + +   C+  L+ H+  V+ V +   +E L++     ++K
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175

Query: 84  IWNLAVP--TVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG-------- 133
           ++           TL GH+S++ S+ F P G  L S S D  +++W     G        
Sbjct: 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235

Query: 134 -------CIYTYRG-HSKSINSIRFSPDGQWIASGGEDGVVRI 168
                  CI T  G HS++I  I +      +A+   D  +R+
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278



 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 98  GHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG--CIYTYRGHSKSINSIRFSPDGQ 155
           GH+ ++  V + P G+YL S S D+   +W   +    C+ T  GH   + S+ ++P G 
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118

Query: 156 WIASGGEDGVVRI 168
            +A+   D  V +
Sbjct: 119 LLATCSRDKSVWV 131



 Score = 30.0 bits (66), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 12  MAHGASVNCLALGKKSGQVLATGGDDKKVNLW 43
            AH   VNC+A   K   +LA+  DD +V  W
Sbjct: 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331


>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 1
 pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 2
          Length = 343

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG-NGEET 72
           H   V+ LAL +++   +++  D K + LW L          GH + V SV F  +  + 
Sbjct: 75  HNHFVSDLALSQENCFAISSSWD-KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133

Query: 73  LSAGCQSGSIKIWNL--AVPTVQRTLNGHKSSITSVDF----------HPYGDYLCSGSL 120
           LSAG +   IK+WN+             H   ++ V +           P+  Y  S   
Sbjct: 134 LSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192

Query: 121 DSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLT 175
           D  +K+W+   +   YT++ H  ++N +  SP+G++IA+GG+D  + I    +LT
Sbjct: 193 DGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 17/130 (13%)

Query: 54  LSGHSTPVESVQFGNGEE------TLSAGCQSGSIKIWNL---------AVPTVQRTLNG 98
           L GHS  V S+  G  ++       L +G +  ++ IW L          +P   + L G
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP--HKALTG 74

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIA 158
           H   ++ +       +  S S D  ++LWDLR       + GH   + S+ FSPD + I 
Sbjct: 75  HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134

Query: 159 SGGEDGVVRI 168
           S G +  +++
Sbjct: 135 SAGAEREIKL 144


>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
 pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
          Length = 464

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 29/173 (16%)

Query: 22  ALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPV---ESVQFGNGEETLSAGCQ 78
           AL    G +L +G  D+ V +W + K  C     GH++ V   + V++ N +  ++ G +
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSR 225

Query: 79  SGSIKIWNL-------------AVPTVQRT----------LNGHKSSITSVDFHPYGDYL 115
             ++ +W L               P V  T          L GH +S+ +V  H  G+ +
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--GNIV 283

Query: 116 CSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            SGS D+ + +WD+ +  C+Y   GH+  I S  +  + +   S   D  +RI
Sbjct: 284 VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 28/181 (15%)

Query: 11  FMAHGASVNCLALGK-KSGQVLATGGDDKKVNLWALGKSNCIMS---------------- 53
           F  H ++V CL + + K+ + + TG  D  +++W L K + +                  
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258

Query: 54  -------LSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSV 106
                  L GH   V +V  G+G   +S G    ++ +W++A       L+GH   I S 
Sbjct: 259 NPYFVGVLRGHXASVRTVS-GHGNIVVS-GSYDNTLIVWDVAQXKCLYILSGHTDRIYST 316

Query: 107 DFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVV 166
            +        S S D+ I++WDL      YT +GH+  +  +R S   +++ S   DG +
Sbjct: 317 IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSI 374

Query: 167 R 167
           R
Sbjct: 375 R 375



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGC 77
           + CL         + TG DDK + ++       ++ LSGH   V ++++ +G   L +G 
Sbjct: 125 ITCLQF---EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGS 180

Query: 78  QSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD--YLCSGSLDSFIKLWDLRRKGCI 135
              ++++W++          GH S++  +D   Y +  Y+ +GS D+ + +W L ++  +
Sbjct: 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240



 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 53  SLSGHSTPV-ESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
           +L GH T V   +QF   +  +  G     I++++         L+GH   + ++ +  +
Sbjct: 116 TLRGHXTSVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS--PDGQWIASGGEDGVVRI 168
           G  L SGS D  +++WD+++  C + + GH+ ++  +      + ++I +G  D  + +
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231



 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 294 LTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSE 332
           +  S S DRTV  WD++K       E ++ST+R L   E
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213


>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
 pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
          Length = 464

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 29/173 (16%)

Query: 22  ALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPV---ESVQFGNGEETLSAGCQ 78
           AL    G +L +G  D+ V +W + K  C     GH++ V   + V++ N +  ++ G +
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSR 225

Query: 79  SGSIKIWNL-------------AVPTVQRT----------LNGHKSSITSVDFHPYGDYL 115
             ++ +W L               P V  T          L GH +S+ +V  H  G+ +
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GNIV 283

Query: 116 CSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            SGS D+ + +WD+ +  C+Y   GH+  I S  +  + +   S   D  +RI
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)

Query: 11  FMAHGASVNCLALGK-KSGQVLATGGDDKKVNLWALGKSNCIMS---------------- 53
           F  H ++V CL + + K+ + + TG  D  +++W L K + +                  
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258

Query: 54  -------LSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSV 106
                  L GH   V +V  G+G   +S G    ++ +W++A       L+GH   I S 
Sbjct: 259 NPYFVGVLRGHMASVRTVS-GHGNIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYST 316

Query: 107 DFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVV 166
            +        S S+D+ I++WDL     +YT +GH+  +  +R S   +++ S   DG +
Sbjct: 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSI 374

Query: 167 R 167
           R
Sbjct: 375 R 375



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 18  VNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGC 77
           + CL         + TG DDK + ++       ++ LSGH   V ++++ +G   L +G 
Sbjct: 125 ITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGS 180

Query: 78  QSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD--YLCSGSLDSFIKLWDLRRKGCI 135
              ++++W++          GH S++  +D   Y +  Y+ +GS D+ + +W L ++  +
Sbjct: 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 53  SLSGHSTPV-ESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
           +L GH T V   +QF   +  +  G     I++++         L+GH   + ++ +  +
Sbjct: 116 TLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172

Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS--PDGQWIASGGEDGVVRI 168
           G  L SGS D  +++WD+++  C + + GH+ ++  +      + ++I +G  D  + +
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231



 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 294 LTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSE 332
           +  S S DRTV  WD++K       E ++ST+R L   E
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213


>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 420

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTP---VESVQFGNGEETLSAGCQSGSIK 83
           SG VLA   D+  V LW+   S  I+ L     P   + SV +      L+ G  S  ++
Sbjct: 115 SGNVLAVALDNS-VYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR-RKGCIYTYRGHS 142
           +W++      R +  H + + S+ ++ Y   L SGS    I   D+R  +  + T  GHS
Sbjct: 173 LWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
           + +  +R++PDG+ +ASGG D +V +
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNV 256



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 28  GQVLATGGDDKKVNLW--ALGKSNCI--MSLSGHSTPVESVQFGNGEETLSA---GCQSG 80
           G+ LA+GG+D  VN+W  A G+   +   + + H   V++V +   +  + A   G    
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS--LDSFIKLWDLRRKGCIYTY 138
            I+IWN+        ++ H S + S+ + P+   L SG     + + +W       +   
Sbjct: 302 HIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 360

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHL 174
           +GH+  + S+  SPDG  +AS   D  +R+   F L
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396



 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           K G  LA G    +V LW + +   + +++ HS  V S+ + +    LS+G +SG I   
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 214

Query: 86  NLAVPTVQ-RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR--RKGCI--YTYRG 140
           ++ V      TL+GH   +  + + P G +L SG  D+ + +W       G +   T+  
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274

Query: 141 HSKSINSIRFSP-DGQWIASGG--EDGVVRI 168
           H  ++ ++ + P     +A+GG   D  +RI
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305


>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC.
 pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC
          Length = 431

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTP---VESVQFGNGEETLSAGCQSGSIK 83
           SG VLA   D+  V LW+   S  I+ L     P   + SV +      L+ G  S  ++
Sbjct: 126 SGNVLAVALDNS-VYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR-RKGCIYTYRGHS 142
           +W++      R +  H + + S+ ++ Y   L SGS    I   D+R  +  + T  GHS
Sbjct: 184 LWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
           + +  +R++PDG+ +ASGG D +V +
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNV 267



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 28  GQVLATGGDDKKVNLW--ALGKSNCI--MSLSGHSTPVESVQFGNGEETLSA---GCQSG 80
           G+ LA+GG+D  VN+W  A G+   +   + + H   V++V +   +  + A   G    
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS--LDSFIKLWDLRRKGCIYTY 138
            I+IWN+        ++ H S + S+ + P+   L SG     + + +W       +   
Sbjct: 313 HIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 371

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHL 174
           +GH+  + S+  SPDG  +AS   D  +R+   F L
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 407



 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           K G  LA G    +V LW + +   + +++ HS  V S+ + +    LS+G +SG I   
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 225

Query: 86  NLAVPTVQ-RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR--RKGCI--YTYRG 140
           ++ V      TL+GH   +  + + P G +L SG  D+ + +W       G +   T+  
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285

Query: 141 HSKSINSIRFSP-DGQWIASGG--EDGVVRI 168
           H  ++ ++ + P     +A+GG   D  +RI
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 316


>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
           Eif3i Complex With Eif3b C-Terminus (655-700)
 pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
           Eif3i Complex With Eif3b C-Terminus (655-700)
          Length = 369

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 41  NLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHK 100
           NL+  G     + L+GH  P+  V++    + L +  +  S  +W         TL+GH 
Sbjct: 15  NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74

Query: 101 SSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWI 157
            +I S+D   +  Y  +GS D  IKLWD+    C+ T++     +  + FSP G + 
Sbjct: 75  GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYF 130



 Score = 34.7 bits (78), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           +GH   +N++  SP G   ASGGEDG +R+
Sbjct: 312 QGHFGPLNTVAISPQGTSYASGGEDGFIRL 341



 Score = 33.5 bits (75), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 48/229 (20%)

Query: 29  QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQS-----GSIK 83
           +   TG  D  + LW +    C+ +      PV+ V+F        A   +     GSI 
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145

Query: 84  IWNLAVPTVQRTLNG------HK-------SSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
           I+ +   +    L        HK        + T   +   G Y+ +G  D  I  +D+ 
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205

Query: 131 RKGCIYTYRG----HSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSL 186
                Y Y      H KSI+ ++FSPD  +  +   D             T+  +VD+S 
Sbjct: 206 NN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-------------TNSFLVDVST 249

Query: 187 VHPLGTPPPQYTSSVPFSHN--TSLRKSFTKGRPGGTKAKIDVTRIEEN 233
           +  L     +Y +  P +    T L++    G  GG +AK DVT    N
Sbjct: 250 LQVL----KKYETDCPLNTAVITPLKEFIILG--GGQEAK-DVTTTSAN 291



 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 96  LNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQ 155
           L GH+  +T V ++  GD L S S DS   +W       + T  GH+ +I SI      +
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87

Query: 156 WIASGGEDGVVRI 168
           +  +G  D  +++
Sbjct: 88  YCVTGSADYSIKL 100



 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 23/161 (14%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           K G +L +   D   ++W       + +L GH+  + S+      +    G    SIK+W
Sbjct: 42  KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101

Query: 86  NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK------LWDLRRKGC----- 134
           +++      T       +  V+F P G+Y  +  LD+ +K      ++++ R        
Sbjct: 102 DVSNGQCVATWKS-PVPVKRVEFSPCGNYFLA-ILDNVMKNPGSINIYEIERDSATHELT 159

Query: 135 ---------IYTYRGHSKSINSIRFSPDGQWIASGGEDGVV 166
                    I T+ G   +  +  +S  G++I +G +DG +
Sbjct: 160 KVSEEPIHKIITHEGLDAATVA-GWSTKGKYIIAGHKDGKI 199


>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
 pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
 pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
          Length = 337

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 28  GQVLATGGDDKKVNLWALGKSN--CIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           G  L  GG+   +++W L          L+  +    ++      +   + C  G+I +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 86  NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
           +L   T+ R   GH    + +D    G  L +G LD+ ++ WDL R+G        +  I
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL-REGRQLQQHDFTSQI 227

Query: 146 NSIRFSPDGQWIASGGEDGVVRI 168
            S+ + P G+W+A G E   V +
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEV 250


>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 318

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTP---VESVQFGNGEETLSAGCQSGSIK 83
           SG VLA   D+  V LW+   S  I+ L     P   + SV +      L+ G  S  ++
Sbjct: 35  SGNVLAVALDNS-VYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92

Query: 84  IWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR-RKGCIYTYRGHS 142
           +W++      R +  H + + S+ ++ Y   L SGS    I   D+R  +  + T  GHS
Sbjct: 93  LWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150

Query: 143 KSINSIRFSPDGQWIASGGEDGVVRI 168
           + +  +R++PDG+ +ASGG D +V +
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNV 176



 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 28  GQVLATGGDDKKVNLW--ALGKSNCI--MSLSGHSTPVESVQFGNGEETLSA---GCQSG 80
           G+ LA+GG+D  VN+W  A G+   +   + + H   V++V +   +  + A   G    
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGS--LDSFIKLWDLRRKGCIYTY 138
            I+IWN+        ++ H S + S+ + P+   L SG     + + +W       +   
Sbjct: 222 HIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHL 174
           +GH+  + S+  SPDG  +AS   D  +R+   F L
Sbjct: 281 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316



 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 26  KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
           K G  LA G    +V LW + +   + +++ HS  V S+ + +    LS+G +SG I   
Sbjct: 77  KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 134

Query: 86  NLAVPTVQ-RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
           ++ V      TL+GH   +  + + P G +L SG  D+ + +W
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177


>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 15/151 (9%)

Query: 27  SGQVLATGGDDKKVNLWALG---KSNCIMS----LSGHSTPVESVQFGNGEETL-SAGCQ 78
           SG +L +  DD  V LW +    K   I+      +GHS  VE V +    E+L  +   
Sbjct: 192 SGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250

Query: 79  SGSIKIWNLAVPTVQR---TLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRR-KG 133
              + IW+    T  +    ++ H + +  + F+PY ++ L +GS D  + LWDLR  K 
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310

Query: 134 CIYTYRGHSKSINSIRFSPDGQWI-ASGGED 163
            ++T+  H   I  + +SP  + I AS G D
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTD 341



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 23/180 (12%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMS----LSGHSTPVESVQF 66
           F  H A V  +A       +  +  DD+K+ +W   +SN        +  H+  V  + F
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT-RSNTTSKPSHLVDAHTAEVNCLSF 283

Query: 67  G-NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSF 123
               E  L+ G    ++ +W+L    ++  T   HK  I  V + P+ +  L S   D  
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343

Query: 124 IKLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
           + +WDL + G               ++ + GH+  I+   ++P+  W I S  ED +++I
Sbjct: 344 LNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 403



 Score = 37.4 bits (85), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D   +    RS   S     V      ++ L  +P   FIL T S AD+
Sbjct: 242 ESLFGSVAD--DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS-ADK 298

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + T E +   I ++ +S   E +L       ++  W+ ++
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351


>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
 pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 15/151 (9%)

Query: 27  SGQVLATGGDDKKVNLWALG---KSNCIMS----LSGHSTPVESVQFGNGEETL-SAGCQ 78
           SG +L +  DD  V LW +    K   I+      +GHS  VE V +    E+L  +   
Sbjct: 192 SGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250

Query: 79  SGSIKIWNLAVPTVQR---TLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRR-KG 133
              + IW+    T  +    ++ H + +  + F+PY ++ L +GS D  + LWDLR  K 
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310

Query: 134 CIYTYRGHSKSINSIRFSPDGQWI-ASGGED 163
            ++T+  H   I  + +SP  + I AS G D
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTD 341



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMS----LSGHSTPVESVQF 66
           F  H A V  +A       +  +  DD+K+ +W   +SN        +  H+  V  + F
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT-RSNTTSKPSHLVDAHTAEVNCLSF 283

Query: 67  G-NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSF 123
               E  L+ G    ++ +W+L    ++  T   HK  I  V + P+ +  L S   D  
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343

Query: 124 IKLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
           + +WDL + G               ++ + GH+  I+   ++P+  W I S  ED + +I
Sbjct: 344 LNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQI 403



 Score = 36.2 bits (82), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D        RS   S     V      ++ L  +P   FIL T S AD+
Sbjct: 242 ESLFGSVAD--DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS-ADK 298

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + T E +   I ++ +S   E +L       ++  W+ ++
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351


>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
          Length = 430

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 31/173 (17%)

Query: 31  LATGGDDKKVNLW---ALGKSNCIMS----LSGHSTPVESVQFGNGEETL-SAGCQSGSI 82
           L +  DD  + LW   A  K + ++      +GH+  VE V +    E+L  +      +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256

Query: 83  KIW-----NLAVPTVQRTLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRR-KGCI 135
            IW     N + P+   T++ H + +  + F+PY ++ L +GS D  + LWDLR  K  +
Sbjct: 257 MIWDTRNNNTSKPS--HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314

Query: 136 YTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRIGASFHLTNTSIHVVDLSLV 187
           +++  H   I  +++SP  + I AS G             T+  +HV DLS +
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSG-------------TDRRLHVWDLSKI 354



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI---MSLSGHSTPVESVQFG 67
           F  H A V  +A       +  +  DD+K+ +W    +N      ++  H+  V  + F 
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSFI 124
              E  L+ G    ++ +W+L    ++  +   HK  I  V + P+ +  L S   D  +
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346

Query: 125 KLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
            +WDL + G               ++ + GH+  I+   ++P+  W I S  ED ++++
Sbjct: 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNC-IMSLSGHSTPVESVQFGNGEE 71
           AH A VNCL+    S  +LATG  DK V LW L      + S   H   +  VQ+    E
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334

Query: 72  TLSAGCQSG-SIKIWNLAV--------------PTVQRTLNGHKSSITSVDFHPYGDY-L 115
           T+ A   +   + +W+L+               P +     GH + I+   ++P   + +
Sbjct: 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394

Query: 116 CSGSLDSFIKLWDL 129
           CS S D+ +++W +
Sbjct: 395 CSVSEDNIMQVWQM 408



 Score = 40.0 bits (92), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D   +    R+ N S     V      ++ L  +P   FIL T S AD+
Sbjct: 244 ESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADK 300

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + + E +   I ++ +S   E +L       +++ W+ ++
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353


>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
 pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
          Length = 432

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 31/173 (17%)

Query: 31  LATGGDDKKVNLW---ALGKSNCIMS----LSGHSTPVESVQFGNGEETL-SAGCQSGSI 82
           L +  DD  + LW   A  K + ++      +GH+  VE V +    E+L  +      +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258

Query: 83  KIW-----NLAVPTVQRTLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRR-KGCI 135
            IW     N + P+   T++ H + +  + F+PY ++ L +GS D  + LWDLR  K  +
Sbjct: 259 MIWDTRNNNTSKPS--HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 316

Query: 136 YTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRIGASFHLTNTSIHVVDLSLV 187
           +++  H   I  +++SP  + I AS G             T+  +HV DLS +
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSG-------------TDRRLHVWDLSKI 356



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI---MSLSGHSTPVESVQFG 67
           F  H A V  +A       +  +  DD+K+ +W    +N      ++  H+  V  + F 
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSFI 124
              E  L+ G    ++ +W+L    ++  +   HK  I  V + P+ +  L S   D  +
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348

Query: 125 KLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
            +WDL + G               ++ + GH+  I+   ++P+  W I S  ED ++++
Sbjct: 349 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 407



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNC-IMSLSGHSTPVESVQFGNGEE 71
           AH A VNCL+    S  +LATG  DK V LW L      + S   H   +  VQ+    E
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 336

Query: 72  TLSAGCQSG-SIKIWNLAV--------------PTVQRTLNGHKSSITSVDFHPYGDY-L 115
           T+ A   +   + +W+L+               P +     GH + I+   ++P   + +
Sbjct: 337 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 396

Query: 116 CSGSLDSFIKLWDL 129
           CS S D+ +++W +
Sbjct: 397 CSVSEDNIMQVWQM 410



 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D   +    R+ N S     V      ++ L  +P   FIL T S AD+
Sbjct: 246 ESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADK 302

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + + E +   I ++ +S   E +L       +++ W+ ++
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355


>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 31/173 (17%)

Query: 31  LATGGDDKKVNLW---ALGKSNCIMS----LSGHSTPVESVQFGNGEETL-SAGCQSGSI 82
           L +  DD  + LW   A  K + ++      +GH+  VE V +    E+L  +      +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260

Query: 83  KIW-----NLAVPTVQRTLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRR-KGCI 135
            IW     N + P+   T++ H + +  + F+PY ++ L +GS D  + LWDLR  K  +
Sbjct: 261 MIWDTRNNNTSKPS--HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 318

Query: 136 YTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRIGASFHLTNTSIHVVDLSLV 187
           +++  H   I  +++SP  + I AS G             T+  +HV DLS +
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSG-------------TDRRLHVWDLSKI 358



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI---MSLSGHSTPVESVQFG 67
           F  H A V  +A       +  +  DD+K+ +W    +N      ++  H+  V  + F 
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSFI 124
              E  L+ G    ++ +W+L    ++  +   HK  I  V + P+ +  L S   D  +
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350

Query: 125 KLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
            +WDL + G               ++ + GH+  I+   ++P+  W I S  ED ++++
Sbjct: 351 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 409



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNC-IMSLSGHSTPVESVQFGNGEE 71
           AH A VNCL+    S  +LATG  DK V LW L      + S   H   +  VQ+    E
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 338

Query: 72  TLSAGCQSG-SIKIWNLAV--------------PTVQRTLNGHKSSITSVDFHPYGDY-L 115
           T+ A   +   + +W+L+               P +     GH + I+   ++P   + +
Sbjct: 339 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 398

Query: 116 CSGSLDSFIKLWDL 129
           CS S D+ +++W +
Sbjct: 399 CSVSEDNIMQVWQM 412



 Score = 40.0 bits (92), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D   +    R+ N S     V      ++ L  +P   FIL T S AD+
Sbjct: 248 ESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADK 304

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + + E +   I ++ +S   E +L       +++ W+ ++
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357


>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
          Length = 401

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 37  DKKVNLW-ALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRT 95
           ++ V +W A   S   ++ +  ST V SV++ +    LS G  +G + I+++   T  RT
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171

Query: 96  LNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR-RKGCIYTYRGHSKSINSIRFSPDG 154
           + GH++ +  + ++ +   L SGS    I   D+R     I T +GHS  +  + +  DG
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229

Query: 155 QWIASGGEDGVVRI 168
             +ASGG D VV+I
Sbjct: 230 LQLASGGNDNVVQI 243



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 28  GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
           G  L+ G  +  V+++ +     + +++GH   V  + +      LS+G +SG+I   ++
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDV 203

Query: 88  AVPTVQ-RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSIN 146
            +   Q  TL GH S +  + +   G  L SG  D+ +++WD R     +T   H+ ++ 
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263

Query: 147 SIRFSP-DGQWIASGG 161
           ++ + P     +A+GG
Sbjct: 264 AVAWCPWQSNLLATGG 279



 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
              H + V  LA  +  G  LA+GG+D  V +W    S    + + H+  V++V +   +
Sbjct: 213 LQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271

Query: 71  ETLSA---GCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCS--GSLDSFIK 125
             L A   G     I  WN A      T++   S +TS+ + P+   + S  G  D+ + 
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLS 330

Query: 126 LWDLRRKGCIYTYR--GHSKSINSIRFSPDGQWIASGGED 163
           +W     G         H   +     SPDG+ +++   D
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD 370


>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
 pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
 pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
          Length = 425

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 24/160 (15%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNC-IMSLSGHSTPVESVQFGNGEE 71
           AH A VNCL+    S  +LATG  DK V LW L      + S   H   +  VQ+    E
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330

Query: 72  TLSAGCQSG-SIKIWNLAV--------------PTVQRTLNGHKSSITSVDFHPYGDY-L 115
           T+ A   +   + +W+L+               P +     GH + I+   ++P   + +
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 390

Query: 116 CSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQ 155
           CS S D+ +++W +     IY       S++     P+GQ
Sbjct: 391 CSVSEDNIMQVWQMAEN--IYNDEDPEGSVD-----PEGQ 423



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI---MSLSGHSTPVESVQFG 67
           F  H A V  ++       +  +  DD+K+ +W    +N      S+  H+  V  + F 
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD-YLCSGSLDSFI 124
              E  L+ G    ++ +W+L    ++  +   HK  I  V + P+ +  L S   D  +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342

Query: 125 KLWDLRRKG--------------CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRI 168
            +WDL + G               ++ + GH+  I+   ++P+  W I S  ED ++++
Sbjct: 343 NVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401



 Score = 39.7 bits (91), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 243 EELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADR 302
           E LF ++A+  D   +    RS N S     V      ++ L  +P   FIL T S AD+
Sbjct: 240 ESLFGSVAD--DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS-ADK 296

Query: 303 TVNFWDLEKFSL-VSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPAR 354
           TV  WDL    L + + E +   I ++ +S   E +L       ++  W+ ++
Sbjct: 297 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349


>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
          Length = 408

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 22/143 (15%)

Query: 55  SGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDY 114
           S H +PV +         ++ G +   +++ +L   +    L GH+  I +V + P  DY
Sbjct: 146 SHHMSPVSTKHC-----LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200

Query: 115 -LCSGSLDSFIKLWDLRR-KGCIYTY---------------RGHSKSINSIRFSPDGQWI 157
            L + S DS +KLWD+RR  GC+ T                  H+  +N + F+ DG  +
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260

Query: 158 ASGGEDGVVRIGASFHLTNTSIH 180
            + G D  +R+  S +  NT ++
Sbjct: 261 LTVGTDNRMRLWNSSNGENTLVN 283


>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
          Length = 330

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 28  GQVLATGGDDKKVNLWALGKS----NCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIK 83
           G  LAT   DK V +W   +S     CI  L  HS  V+ V +   E  L++     +++
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178

Query: 84  IWNLAVPTVQ--RTLNGHKSSITSVDFHPY-GDY-LCSGSLDSFIKLW--------DLRR 131
           IW       +    LNGH+ ++ S DF    G + LCSGS DS +++W        D + 
Sbjct: 179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238

Query: 132 KGCIYTY-RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             C       H + + ++ +  +G  IAS G DGV+ +
Sbjct: 239 WVCEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAV 275



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 16/174 (9%)

Query: 10  DFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKS-------NCIMSLSGHSTPVE 62
           D  AH  ++  +A  +    +LA G  D  V++WA  +S       + +  + GH   V+
Sbjct: 53  DETAHKKAIRSVAW-RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111

Query: 63  SVQFGNGEETLSAGCQSGSIKIWNLAVPTVQ----RTLNGHKSSITSVDFHPYGDYLCSG 118
            V + N    L+   +  S+ IW       +      L  H   +  V +HP    L S 
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171

Query: 119 SLDSFIKLWDLRRKG--CIYTYRGHSKSINSIRFSP-DGQW-IASGGEDGVVRI 168
           S D  +++W        C+    GH  ++ S  F   +G + + SG +D  VR+
Sbjct: 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 17/133 (12%)

Query: 49  NCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL------NGHKSS 102
           N I SL  +   + S  F  G   L+ G     IK+  ++V     TL        HK +
Sbjct: 5   NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKA 60

Query: 103 ITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG-------CIYTYRGHSKSINSIRFSPDGQ 155
           I SV + P+   L +GS DS + +W              +    GH   +  + +S DG 
Sbjct: 61  IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120

Query: 156 WIASGGEDGVVRI 168
           ++A+   D  V I
Sbjct: 121 YLATCSRDKSVWI 133



 Score = 31.2 bits (69), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 12  MAHGA-SVNCLALGKKSGQ-VLATGGDDKKVNLWALGKS 48
           + HG   +N +   + +G+ +LATGGDD  VN W+L K+
Sbjct: 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329


>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
          Length = 425

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)

Query: 54  LSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD 113
           L GH  P+  ++F +  + L +    G+++IW+      Q    GH  SI S  +    D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDD 301

Query: 114 YLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            + S S+D  ++LW L++   +         I + R S DGQ  A    DG V +
Sbjct: 302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356



 Score = 36.6 bits (83), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 80  GSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW---DLRRKGCIY 136
           G+I ++ +   T    L GH   I+ ++F+     L S S D  +++W   +   + C Y
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286

Query: 137 TYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVD 183
              GHS+SI S  +  D + + S   DG VR+ +    T  ++ +VD
Sbjct: 287 ---GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVD 329



 Score = 32.7 bits (73), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 55  SGHST-PVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD 113
           SG +T  V  + + +   ++  G ++G +++WN     +   LN H++ I SV ++  G 
Sbjct: 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT 162

Query: 114 YLCSGSLDSFIKLWDL 129
           ++ S  +++   LW++
Sbjct: 163 HIISMDVENVTILWNV 178



 Score = 31.2 bits (69), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
            + H   ++ L     + ++L +  DD  + +W  G  N      GHS  + S  +   +
Sbjct: 243 LIGHHGPISVLEF-NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301

Query: 71  ETLSAGCQSGSIKIWNLAVPTV 92
           + +S     GS+++W+L   T+
Sbjct: 302 KVISC-SMDGSVRLWSLKQNTL 322


>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
           Reg Particle Of The Proteasome
          Length = 417

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 24/141 (17%)

Query: 56  GHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL 115
            H + +  ++F    E L +  Q   +KIW++   +  RTL GH++++T +     G  +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193

Query: 116 CSGSLDSFIKLWDLRRKGCIYTYR----------------GHSKSI--------NSIRFS 151
            S SLD  I+LW+      I+T+                 G  + +        N++ F 
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253

Query: 152 PDGQWIASGGEDGVVRIGASF 172
             G+++ +G   GV+ +   F
Sbjct: 254 TYGKYVIAGHVSGVITVHNVF 274



 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 76  GCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI 135
           G   G IK+ +      +     H S IT + F P G+ L S S D  +K+W ++     
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI-----GASFHLTN 176
            T  GH  ++  I     G+ + S   DG +R+     G + H  N
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217



 Score = 32.7 bits (73), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQF-GNGEETLSAGCQSGSIKIW 85
           SG+ L +   D ++ +W++   +   +L GH   V  +     G   LSA    G+I++W
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLW 205

Query: 86  NLAVPTVQRTLNGHK------------------------SSITSVDFHPYGDYLCSGSLD 121
                T   T N  +                        S   +++F  YG Y+ +G + 
Sbjct: 206 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 265

Query: 122 SFIKLWDL-RRKGCIYTYRGHSKSINSIRFS-PDGQWIASGGEDGVV 166
             I + ++  ++  I      + S NS+     +  +I +G E+G++
Sbjct: 266 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 312


>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
 pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
          Length = 420

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 24/141 (17%)

Query: 56  GHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL 115
            H + +  ++F    E L +  Q   +KIW++   +  RTL GH++++T +     G  +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196

Query: 116 CSGSLDSFIKLWDLRRKGCIYTYR----------------GHSKSI--------NSIRFS 151
            S SLD  I+LW+      I+T+                 G  + +        N++ F 
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256

Query: 152 PDGQWIASGGEDGVVRIGASF 172
             G+++ +G   GV+ +   F
Sbjct: 257 TYGKYVIAGHVSGVITVHNVF 277



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 76  GCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCI 135
           G   G IK+ +      +     H S IT + F P G+ L S S D  +K+W ++     
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174

Query: 136 YTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI-----GASFHLTN 176
            T  GH  ++  I     G+ + S   DG +R+     G + H  N
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220



 Score = 32.7 bits (73), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQF-GNGEETLSAGCQSGSIKIW 85
           SG+ L +   D ++ +W++   +   +L GH   V  +     G   LSA    G+I++W
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLW 208

Query: 86  NLAVPTVQRTLNGHK------------------------SSITSVDFHPYGDYLCSGSLD 121
                T   T N  +                        S   +++F  YG Y+ +G + 
Sbjct: 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268

Query: 122 SFIKLWDL-RRKGCIYTYRGHSKSINSIRFS-PDGQWIASGGEDGVV 166
             I + ++  ++  I      + S NS+     +  +I +G E+G++
Sbjct: 269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315


>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 436

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKLWDLRR---KGCIYTY 138
           ++WNL +         HK  +T V  +P  D +L + S+D  +K+WDLR+   K      
Sbjct: 242 ELWNLRM---------HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             H   +N+  FSPDG  + +  +   +R+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRV 322


>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 435

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKLWDLRR---KGCIYTY 138
           ++WNL +         HK  +T V  +P  D +L + S+D  +K+WDLR+   K      
Sbjct: 242 ELWNLRM---------HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             H   +N+  FSPDG  + +  +   +R+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRV 322


>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
          Length = 436

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 83  KIWNLAVPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKLWDLRR---KGCIYTY 138
           ++WNL +         HK  +T V  +P  D +L + S+D  +K+WDLR+   K      
Sbjct: 243 ELWNLRM---------HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 293

Query: 139 RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
             H   +N+  FSPDG  + +  +   +R+
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRV 323


>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
           Structure Of A C. Elegans Homologue Of Yeast Actin
           Interacting Protein 1 (Aip1).
 pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
           Caenorhabditis Elegans
          Length = 611

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 27  SGQVLATGGDDKKVNLWALGKSNCIM--SLSGHSTPVESVQFGNGEETLSAGCQS----G 80
           SG   A+G     V +W   ++  I+  ++   S PV+ + + +  + ++A  +     G
Sbjct: 70  SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDY-LCSGSLDSFIKLWDLRRKGCIYTYR 139
            + +++    T    L G   ++ SVDF P   + + SGS D+ + +++        T+ 
Sbjct: 130 HVFLFDTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 187

Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVV 166
            H+K ++S+R++PDG   AS G DG +
Sbjct: 188 EHTKFVHSVRYNPDGSLFASTGGDGTI 214



 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 20  CLALGKKSGQVLATGGDDKKVNLWAL-GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQ 78
           C+AL     Q +A GG D KV+++ L G S   +    H   + SV F N    L A  Q
Sbjct: 453 CVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 511

Query: 79  SGSIKIWNLAVPTVQRTLNG---HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG-- 133
           S  +  +++A        N    H + +  V + P    L +GSLD+ + +W++ +    
Sbjct: 512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571

Query: 134 CIYTYRGHS-KSINSIRFSPDGQWIASGGEDGVVRI 168
            I     H+  S+NS+ +  +   I S G+D  ++ 
Sbjct: 572 PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKF 606



 Score = 32.3 bits (72), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 40  VNLWALGKSNCIMSLSGHSTPVESVQFGNGEE-TLSAGCQSGSIKIWNLAVPTVQRTLNG 98
           V L+  G SN   +L+G +  + SV F       + +G    ++ I+       + T   
Sbjct: 131 VFLFDTGTSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188

Query: 99  HKSSITSVDFHPYGDYLCSGSLDSFIKLW---DLRRKGCI----YTYRGHSKSINSIRFS 151
           H   + SV ++P G    S   D  I L+   D  + G           HS S+  + +S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248

Query: 152 PDGQWIASGGEDGVVRI 168
           PDG  IAS   D  ++I
Sbjct: 249 PDGTKIASASADKTIKI 265


>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
 pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
          Length = 357

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 28  GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWN 86
           G    +GG D  V +W L +   + S + HS+ V  V    G++T+   C + G I +W+
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210

Query: 87  LAVPTVQRTLNGHKSSI--TSVDFHPYGD--YLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
              P     ++   S    TSV +HP  D  + C G     + L +++      T   HS
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC-GDETGNVSLVNIKNPDSAQTSAVHS 269

Query: 143 KSINSIRFSPDGQ-WIASGGEDGVVRI 168
           ++I  + +S     ++AS  ED  V +
Sbjct: 270 QNITGLAYSYHSSPFLASISEDCTVAV 296



 Score = 38.5 bits (88), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 70  EETLSAGCQSGSIKIWNL----AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIK 125
           E+ +     SG++++W +    ++   +     H   + ++     G    SG  D  +K
Sbjct: 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164

Query: 126 LWDLRRKGCIYTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRI 168
           +WDL +K  + +Y  HS  +N +   P    I  S GEDG + +
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208



 Score = 37.4 bits (85), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGK---SNCIMSLSGHSTPVESVQFG 67
           + AH + VNC+A       +  + G+D ++ LW   K   +  I   +  + P       
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236

Query: 68  NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKL 126
             ++T + G ++G++ + N+  P   +T   H  +IT + +  +   +L S S D  + +
Sbjct: 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296

Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSP 152
            D      ++    H   +  + +SP
Sbjct: 297 LDADFSE-VFRDLSHRDFVTGVAWSP 321


>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
           Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
 pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
           (Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
 pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
 pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 382

 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 99  HKSSITSVDFHPYGDYL-CSGSLDSFIKLWDLRR---KGCIYTYRGHSKSINSIRFSP-D 153
           HK+ +T  +F+P  D+L  + S+D+ +KLWDLR    K        H K +N+  F+P D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261

Query: 154 GQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHP 189
              + +  +   +R+ +S+  +       D  ++HP
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKP-----DQIIIHP 292


>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
           Photoproduct Containing Dna-Duplex
 pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
           Containing Dna-Duplex
 pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
          Length = 383

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 99  HKSSITSVDFHPYGDYL-CSGSLDSFIKLWDLRR---KGCIYTYRGHSKSINSIRFSP-D 153
           HK+ +T  +F+P  D+L  + S+D+ +KLWDLR    K        H K +N+  F+P D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262

Query: 154 GQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHP 189
              + +  +   +R+ +S+  +       D  ++HP
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKP-----DQIIIHP 293


>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
          Length = 402

 Score = 42.0 bits (97), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM-------SLSGHSTPVESVQ 65
            H A V  +A    +  V+A+G +D  V +W +     ++       +L GH+  V  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138

Query: 66  FGNGEET--LSAGCQSGSIKIWNLAVPTVQRTL--NGHKSSITSVDFHPYGDYLCSGSLD 121
           +    +   LSAGC +  I +W++       TL  + H  +I SVD+   G  +C+   D
Sbjct: 139 WHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197

Query: 122 SFIKLWDLRR 131
             +++ + R+
Sbjct: 198 KRVRVIEPRK 207


>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
 pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
          Length = 313

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 19  NCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPV---ESVQFGNGEETLSA 75
           N  +L  + G V+ +G  DK   +W  G  + + +L  H+  V   + V F   E     
Sbjct: 106 NVCSLSFQDG-VVISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSFS--ENKFLT 160

Query: 76  GCQSGSIKIWNLAVPTVQRTLNG-HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGC 134
                +IK+W      V +T +G H   +  +     G ++ S S D  IKL D      
Sbjct: 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDV 217

Query: 135 IYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
           + TY GH   +  I+  P+G  I S GED  VRI
Sbjct: 218 LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRI 250


>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
          Length = 344

 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 69  GEETLSAGCQSGSIKIWNL----AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFI 124
           GE  +     SG++++W L     +   +     H   +++V     G    SGS D  I
Sbjct: 92  GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151

Query: 125 KLWDLRRKGCIYTYRGHSKSINSIRFSP 152
           K+WDL ++  + +YR H+  +  +  SP
Sbjct: 152 KVWDLAQQVVLSSYRAHAAQVTCVAASP 179



 Score = 37.7 bits (86), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 31  LATGGDDKKVNLWALGKSNCIM----SLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
           +    D   V LW L ++  ++        H   V +V   +      +G +   IK+W+
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155

Query: 87  LAVPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKLWDLR 130
           LA   V  +   H + +T V   P+ D    S S D+ I LWD R
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200


>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
 pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
          Length = 349

 Score = 40.8 bits (94), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 55  SGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLN----GHKSSITSVDFH- 109
           SGH   V  V +      ++       IK++ L   T    L+     H SSI ++D+  
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65

Query: 110 -PYGDYLCSGSLDSFIKLWDL---------RRKGCIYTYRGHSKSINSIRFSPD--GQWI 157
             YG  + S S D  +KLW+          RR   + T      S+ S++F+P   G  +
Sbjct: 66  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125

Query: 158 ASGGEDGVVRI 168
           A  G DG++R+
Sbjct: 126 ACLGNDGILRL 136


>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
          Length = 351

 Score = 40.8 bits (94), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 55  SGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLN----GHKSSITSVDFH- 109
           SGH   V  V +      ++       IK++ L   T    L+     H SSI ++D+  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67

Query: 110 -PYGDYLCSGSLDSFIKLWDL---------RRKGCIYTYRGHSKSINSIRFSPD--GQWI 157
             YG  + S S D  +KLW+          RR   + T      S+ S++F+P   G  +
Sbjct: 68  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127

Query: 158 ASGGEDGVVRI 168
           A  G DG++R+
Sbjct: 128 ACLGNDGILRL 138



 Score = 32.7 bits (73), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIY----TYRGHSKSI 145
           P +Q   +GH   +  V +  YG ++ + S D  IK++ L +    +    ++R H  SI
Sbjct: 1   PHMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60

Query: 146 NSIRF-SPD-GQWIASGGEDGVVRI 168
            +I + SP+ G+ IAS   D  V++
Sbjct: 61  VAIDWASPEYGRIIASASYDKTVKL 85


>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
          Length = 351

 Score = 40.4 bits (93), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 55  SGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLN----GHKSSITSVDFH- 109
           SGH   V  V +      ++       IK++ L   T    L+     H SSI ++D+  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67

Query: 110 -PYGDYLCSGSLDSFIKLWDL---------RRKGCIYTYRGHSKSINSIRFSPD--GQWI 157
             YG  + S S D  +KLW+          RR   + T      S+ S++F+P   G  +
Sbjct: 68  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127

Query: 158 ASGGEDGVVRI 168
           A  G DG++R+
Sbjct: 128 ACLGNDGILRL 138



 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 90  PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIY----TYRGHSKSI 145
           P  Q   +GH   +  V +  YG ++ + S D  IK++ L +    +    ++R H  SI
Sbjct: 1   PHXQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 60

Query: 146 NSIRF-SPD-GQWIASGGEDGVVRI 168
            +I + SP+ G+ IAS   D  V++
Sbjct: 61  VAIDWASPEYGRIIASASYDKTVKL 85


>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
           Copii Vesicular Coat
          Length = 416

 Score = 39.3 bits (90), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 27/183 (14%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
           F  H +SV  +    K   VLA+GG++ ++ +W + K  C  S S ++         + +
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CTESPSNYTPLTPGQSMSSVD 166

Query: 71  ETLS------------AGCQSGSIKIWNLAVPTVQRTL------NGHKSSITSVDFHPYG 112
           E +S            +   S    IW+L        L      +G K  ++ V++HP  
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226

Query: 113 DYLCSGSL----DSFIKLWDLRRKGC-IYTY-RGHSKSINSIRFS-PDGQWIASGGEDGV 165
               + +     D  I +WDLR     + T  +GH K I S+ +   D   + S G D  
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286

Query: 166 VRI 168
           V +
Sbjct: 287 VLL 289


>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
          Length = 402

 Score = 38.1 bits (87), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 38/159 (23%)

Query: 13  AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
            H A V  +A    +  V+A+G +D  V +W +     ++ L                  
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE---------------- 122

Query: 73  LSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG-DYLCSGSLDSFIKLWDLRR 131
                            P +  TL GH   +  V +HP   + L S   D+ I +WD+  
Sbjct: 123 -----------------PVI--TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGT 163

Query: 132 KGCIYTY--RGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
              + T     H  +I S+ +S DG  I +   D  VR+
Sbjct: 164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202


>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
           Eed-Ezh2 Polycomb Complex
 pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
 pdb|3JZH|A Chain A, Eed-H3k79me3
          Length = 402

 Score = 38.1 bits (87), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWNLAVPTVQRT---LNGHKSSITS 105
           CI    GH   +  ++F   +  L     +  ++++WN+   T+      + GH+  + S
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 202

Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            D+   G+ + S  +D  +KLW +  K
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSK 229



 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM---SLSGHSTPVESVQFG 67
           ++ HG ++N L    +   +L +   D  + LW +     +     + GH   V S  + 
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
             GE+ +S G    S+K+W +     +R +N  K    S D++P
Sbjct: 207 LLGEKIMSCG-MDHSLKLWRI---NSKRMMNAIKE---SYDYNP 243



 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 50  CIMSLS-GHSTPVESVQFG----NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSIT 104
           C+ SL   H+ P+  VQF      G+  + A   S  + ++        R L  +  +  
Sbjct: 45  CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA 104

Query: 105 SVDFHPYGDYLCSGSLDS--------------FIKLWDLRRKGCIYTYRGHSKSINSIRF 150
             +F     Y C+ + DS               I++ +     CI  Y GH  +IN ++F
Sbjct: 105 DENF-----YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 159

Query: 151 SP-DGQWIASGGEDGVVRI 168
            P D   + S  +D  +R+
Sbjct: 160 HPRDPNLLLSVSKDHALRL 178


>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k27 Peptide
          Length = 365

 Score = 37.7 bits (86), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWNLAVPTVQRT---LNGHKSSITS 105
           CI    GH   +  ++F   +  L     +  ++++WN+   T+      + GH+  + S
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165

Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            D+   G+ + S  +D  +KLW +  K
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSK 192



 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM---SLSGHSTPVESVQFG 67
           ++ HG ++N L    +   +L +   D  + LW +     +     + GH   V S  + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
             GE+ +S G    S+K+W +     +R +N  K    S D++P
Sbjct: 170 LLGEKIMSCG-MDHSLKLWRI---NSKRMMNAIKE---SYDYNP 206



 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 50  CIMSLS-GHSTPVESVQFG----NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSIT 104
           C+ SL   H+ P+  VQF      G+  + A   S  + ++        R L  +  +  
Sbjct: 8   CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA 67

Query: 105 SVDFHPYGDYLCSGSLDS--------------FIKLWDLRRKGCIYTYRGHSKSINSIRF 150
             +F     Y C+ + DS               I++ +     CI  Y GH  +IN ++F
Sbjct: 68  DENF-----YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122

Query: 151 SP-DGQWIASGGEDGVVRI 168
            P D   + S  +D  +R+
Sbjct: 123 HPRDPNLLLSVSKDHALRL 141


>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
          Length = 361

 Score = 37.7 bits (86), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWNLAVPTVQRT---LNGHKSSITS 105
           CI    GH   +  ++F   +  L     +  ++++WN+   T+      + GH+  + S
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 161

Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            D+   G+ + S  +D  +KLW +  K
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSK 188



 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM---SLSGHSTPVESVQFG 67
           ++ HG ++N L    +   +L +   D  + LW +     +     + GH   V S  + 
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
             GE+ +S G    S+K+W +     +R +N  K    S D++P
Sbjct: 166 LLGEKIMSCG-MDHSLKLWRI---NSKRMMNAIKE---SYDYNP 202



 Score = 29.6 bits (65), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 50  CIMSLS-GHSTPVESVQFG----NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSIT 104
           C+ SL   H+ P+  VQF      G+  + A   S  + ++        R L  +  +  
Sbjct: 4   CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA 63

Query: 105 SVDFHPYGDYLCSGSLDS--------------FIKLWDLRRKGCIYTYRGHSKSINSIRF 150
             +F     Y C+ + DS               I++ +     CI  Y GH  +IN ++F
Sbjct: 64  DENF-----YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 118

Query: 151 SP-DGQWIASGGEDGVVRI 168
            P D   + S  +D  +R+
Sbjct: 119 HPRDPNLLLSVSKDHALRL 137


>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
 pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
 pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
          Length = 366

 Score = 37.7 bits (86), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWNLAVPTVQRT---LNGHKSSITS 105
           CI    GH   +  ++F   +  L     +  ++++WN+   T+      + GH+  + S
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166

Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            D+   G+ + S  +D  +KLW +  K
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSK 193



 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM---SLSGHSTPVESVQFG 67
           ++ HG ++N L    +   +L +   D  + LW +     +     + GH   V S  + 
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
             GE+ +S G    S+K+W +     +R +N  K    S D++P
Sbjct: 171 LLGEKIMSCG-MDHSLKLWRI---NSKRMMNAIKE---SYDYNP 207



 Score = 29.6 bits (65), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 50  CIMSLS-GHSTPVESVQFG----NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSIT 104
           C+ SL   H+ P+  VQF      G+  + A   S  + ++        R L  +  +  
Sbjct: 9   CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA 68

Query: 105 SVDFHPYGDYLCSGSLDS--------------FIKLWDLRRKGCIYTYRGHSKSINSIRF 150
             +F     Y C+ + DS               I++ +     CI  Y GH  +IN ++F
Sbjct: 69  DENF-----YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123

Query: 151 SP-DGQWIASGGEDGVVRI 168
            P D   + S  +D  +R+
Sbjct: 124 HPRDPNLLLSVSKDHALRL 142


>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H1k26 Peptide
 pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k9 Peptide
 pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H4k20 Peptide
 pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
          Length = 365

 Score = 37.7 bits (86), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 50  CIMSLSGHSTPVESVQFGNGEETLSAGC-QSGSIKIWNLAVPTVQRT---LNGHKSSITS 105
           CI    GH   +  ++F   +  L     +  ++++WN+   T+      + GH+  + S
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165

Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRK 132
            D+   G+ + S  +D  +KLW +  K
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSK 192



 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 11  FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIM---SLSGHSTPVESVQFG 67
           ++ HG ++N L    +   +L +   D  + LW +     +     + GH   V S  + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169

Query: 68  -NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
             GE+ +S G    S+K+W +     +R +N  K    S D++P
Sbjct: 170 LLGEKIMSCG-MDHSLKLWRI---NSKRMMNAIKE---SYDYNP 206



 Score = 29.6 bits (65), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 50  CIMSLS-GHSTPVESVQFG----NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSIT 104
           C+ SL   H+ P+  VQF      G+  + A   S  + ++        R L  +  +  
Sbjct: 8   CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA 67

Query: 105 SVDFHPYGDYLCSGSLDS--------------FIKLWDLRRKGCIYTYRGHSKSINSIRF 150
             +F     Y C+ + DS               I++ +     CI  Y GH  +IN ++F
Sbjct: 68  DENF-----YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122

Query: 151 SP-DGQWIASGGEDGVVRI 168
            P D   + S  +D  +R+
Sbjct: 123 HPRDPNLLLSVSKDHALRL 141


>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
           Ski8p
          Length = 407

 Score = 37.7 bits (86), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 83  KIWNLAVPT--VQRTLN--GHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTY 138
           +I +L+VPT   Q +L    H S + S+ F+  G+ LCS   D  ++ WD++ K  I T 
Sbjct: 280 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339

Query: 139 RGHSKSI 145
             H   I
Sbjct: 340 NMHCDDI 346


>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
           Degradation And Meiotic Recombination
          Length = 397

 Score = 37.4 bits (85), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 83  KIWNLAVPT--VQRTLN--GHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTY 138
           +I +L+VPT   Q +L    H S + S+ F+  G+ LCS   D  ++ WD++ K  I T 
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329

Query: 139 RGHSKSI 145
             H   I
Sbjct: 330 NMHCDDI 336


>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
           Crystal Form
          Length = 615

 Score = 35.0 bits (79), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG----NG 69
            G+ V  +     SG+ + T G D+K++ +       +  +     PV+   F     + 
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264

Query: 70  EETLSAGCQSGSIKIWNLAV-PTVQR-TLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKL 126
           ++  + G  + +I++W++     VQ+ TL+  +     V     G+  + S SLD  +  
Sbjct: 265 QKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323

Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSL 186
           ++L     + T  GH+K I ++  +P    + SG  DG +        +++S+H    +L
Sbjct: 324 YELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI-----MEWSSSSMHQDHSNL 374

Query: 187 VHPLGTPPPQYTSSVPF 203
           +  L     Q  SS+ +
Sbjct: 375 IVSLDNSKAQEYSSISW 391


>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
          Length = 316

 Score = 33.9 bits (76), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 96  LNGHKSSITSVDF-HP-YGDYLCSGSLDSFIKLWDLRRKGCIYT----YRGHSKSINSIR 149
           L GH+  +  V + HP YG+ L S S D  + +W  R +   +     + GH  S+NS+ 
Sbjct: 53  LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW--REENGTWEKSHEHAGHDSSVNSVC 110

Query: 150 FSPD--GQWIASGGEDGVVRI 168
           ++P   G  +A G  DG + +
Sbjct: 111 WAPHDYGLILACGSSDGAISL 131


>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
 pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
          Length = 615

 Score = 32.7 bits (73), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 12/160 (7%)

Query: 14  HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG----NG 69
            G+ V  +     SG+ + T G D+K++ +       +  +     PV+   F     + 
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264

Query: 70  EETLSAGCQSGSIKIWNLAV-PTVQR-TLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKL 126
           ++  + G  + +I++W++     VQ+ TL+  +     V     G+  + S SLD  +  
Sbjct: 265 QKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323

Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVV 166
           ++L     + T  GH+K I ++  +P    + SG  DG +
Sbjct: 324 YELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359


>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
          Length = 357

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 58  STPVESVQFGNG---EETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGD 113
           + P++   FG     +  L+ G   G++ IWNL  P +   ++ GHK  I ++D      
Sbjct: 65  AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124

Query: 114 Y------LCSGSLDSFIKLWDLRRK 132
                  + +GS D  +K+WD R+K
Sbjct: 125 IGEGAPEIVTGSRDGTVKVWDPRQK 149


>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
           Factor Sec12 (P1 Form)
 pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
           Factor Sec12 (P1 Form)
 pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
           Factor Sec12 (P64 Form)
 pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
           Factor Sec12 (P64 Form)
          Length = 365

 Score = 31.6 bits (70), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 81  SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYR- 139
           SIK  N +V   ++  N  K  ITS D    G+     S D+ I L  L+       ++ 
Sbjct: 251 SIKSGNTSVLRSKQVTNRFKG-ITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIFKQ 309

Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVVRI 168
            HS +I  +  SPD  ++AS      + I
Sbjct: 310 AHSFAITEVTISPDSTYVASVSAANTIHI 338


>pdb|3HRD|C Chain C, Crystal Structure Of Nicotinate Dehydrogenase
 pdb|3HRD|G Chain G, Crystal Structure Of Nicotinate Dehydrogenase
          Length = 296

 Score = 31.2 bits (69), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 516 VYNALMPVKSVLLKKQTVQGKLGQTFRDLLAEIEG 550
           VY+      SVL KK++VQG   + F D+L ++EG
Sbjct: 258 VYDMARARPSVLYKKESVQGVFKKLFVDILDQLEG 292


>pdb|1D8H|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With Sulfate And Manganese Ions.
 pdb|1D8H|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With Sulfate And Manganese Ions.
 pdb|1D8H|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With Sulfate And Manganese Ions.
 pdb|1D8I|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With A Sulfate Ion.
 pdb|1D8I|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With A Sulfate Ion.
 pdb|1D8I|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
           Complex With A Sulfate Ion
          Length = 311

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 182 VDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIE---ENAESED 238
           ++L L  P   PP +Y S  P S  T  R S+       +  +ID+T++E   +N++S  
Sbjct: 192 LNLELPVPDNDPPEKYKSQSPISERTKDRVSYIH---NDSCTRIDITKVENHNQNSKSRQ 248

Query: 239 QAGEEELFATIANPCDYSA 257
                E+   I  P   +A
Sbjct: 249 SETTHEVELEINTPALLNA 267


>pdb|3KYH|A Chain A, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
 pdb|3KYH|B Chain B, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
          Length = 310

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 182 VDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIE---ENAESED 238
           ++L L  P   PP +Y S  P S  T  R S+       +  +ID+T++E   +N++S  
Sbjct: 191 LNLELPVPDNDPPEKYKSQSPISERTKDRVSYIH---NDSCTRIDITKVENHNQNSKSRQ 247

Query: 239 QAGEEELFATIANPC 253
                E+   I  P 
Sbjct: 248 SETTHEVELEINTPA 262


>pdb|3PQH|A Chain A, Crystal Structure Of The C-Terminal Fragment Of The
           Bacteriophage Phi92 Membrane-Piercing Protein Gp138
 pdb|3PQH|B Chain B, Crystal Structure Of The C-Terminal Fragment Of The
           Bacteriophage Phi92 Membrane-Piercing Protein Gp138
          Length = 127

 Score = 30.0 bits (66), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGG 161
           L  +G   TY+G + ++N +  +PDG+   SGG
Sbjct: 67  LTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGG 99


>pdb|3PQI|A Chain A, Crystal Structure Of The Bacteriophage Phi92
           Membrane-Piercing Protein Gp138
          Length = 247

 Score = 29.6 bits (65), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDGQWIASGG 161
           L  +G   TY+G + ++N +  +PDG+   SGG
Sbjct: 187 LTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGG 219


>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
           With Maltopentaose
          Length = 516

 Score = 29.6 bits (65), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 425 DMEQFLPKSYQTHQGKSSMSESELMSTIFNGHDKMMAVLRNR------QRSLGL----VY 474
           D EQFL   Y +  GK  +   E    I   H K++  L +       Q  +G     V+
Sbjct: 236 DGEQFLMNGYLSMYGKDYL---EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVH 292

Query: 475 MAVNNKNMEAGIDTALSMNDGTVMIDLFKS 504
              NN  +  G +     ND + ++D FKS
Sbjct: 293 WQYNNPTIPHGAEKPAGYNDYSHLLDAFKS 322


>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
           Cereus Beta-Amylase At Ph 4.6
          Length = 516

 Score = 29.6 bits (65), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 425 DMEQFLPKSYQTHQGKSSMSESELMSTIFNGHDKMMAVLRNR------QRSLGL----VY 474
           D EQFL   Y +  GK  +   E    I   H K++  L +       Q  +G     V+
Sbjct: 236 DGEQFLMNGYLSMYGKDYL---EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVH 292

Query: 475 MAVNNKNMEAGIDTALSMNDGTVMIDLFKS 504
              NN  +  G +     ND + ++D FKS
Sbjct: 293 WQYNNPTIPHGAEKPAGYNDYSHLLDAFKS 322


>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
 pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
 pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
           Var. Mycoides Cocrystallized With Maltose
 pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
           At The Optimum Ph (6.5)
          Length = 516

 Score = 29.6 bits (65), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 425 DMEQFLPKSYQTHQGKSSMSESELMSTIFNGHDKMMAVLRNR------QRSLGL----VY 474
           D EQFL   Y +  GK  +   E    I   H K++  L +       Q  +G     V+
Sbjct: 236 DGEQFLMNGYLSMYGKDYL---EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVH 292

Query: 475 MAVNNKNMEAGIDTALSMNDGTVMIDLFKS 504
              NN  +  G +     ND + ++D FKS
Sbjct: 293 WQYNNPTIPHGAEKPAGYNDYSHLLDAFKS 322


>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
           Cereus Beta-Amylase At Ph 4.6
          Length = 516

 Score = 29.6 bits (65), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 425 DMEQFLPKSYQTHQGKSSMSESELMSTIFNGHDKMMAVLRNR------QRSLGL----VY 474
           D EQFL   Y +  GK  +   E    I   H K++  L +       Q  +G     V+
Sbjct: 236 DGEQFLMNGYLSMYGKDYL---EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVH 292

Query: 475 MAVNNKNMEAGIDTALSMNDGTVMIDLFKS 504
              NN  +  G +     ND + ++D FKS
Sbjct: 293 WQYNNPTIPHGAEKPAGYNDYSHLLDAFKS 322


>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
           MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
          Length = 516

 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 425 DMEQFLPKSYQTHQGKSSMSESELMSTIFNGHDKMMAVLRNR------QRSLGL----VY 474
           D EQFL   Y +  GK  +   E    I   H K++  L +       Q  +G     V+
Sbjct: 236 DGEQFLMNGYLSMYGKDYL---EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVH 292

Query: 475 MAVNNKNMEAGIDTALSMNDGTVMIDLFKS 504
              NN  +  G +     ND + ++D FKS
Sbjct: 293 WQYNNPTIPHGAEKPAGYNDYSHLLDAFKS 322


>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
 pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
           Pombe
 pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
           Pombe
 pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
           Pombe
          Length = 394

 Score = 29.3 bits (64), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 29  QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG-NGEETLSAGCQSGSIKI--W 85
           QV+A+ GDD  + +W L     I++    S+P  SVQF  +    L  G ++G+I+I  W
Sbjct: 158 QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 217

Query: 86  NL 87
            L
Sbjct: 218 TL 219


>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
 pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
          Length = 393

 Score = 29.3 bits (64), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 29  QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG-NGEETLSAGCQSGSIKI--W 85
           QV+A+ GDD  + +W L     I++    S+P  SVQF  +    L  G ++G+I+I  W
Sbjct: 157 QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216

Query: 86  NL 87
            L
Sbjct: 217 TL 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,974,635
Number of Sequences: 62578
Number of extensions: 1050892
Number of successful extensions: 2556
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 578
length of query: 845
length of database: 14,973,337
effective HSP length: 107
effective length of query: 738
effective length of database: 8,277,491
effective search space: 6108788358
effective search space used: 6108788358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)