RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy467
(845 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 124 bits (310), Expect = 1e-31
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQF---- 66
F H V + + G ++A+ +D+ V +W + C L H VE + +
Sbjct: 139 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 67 ----------------GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
G L +G + +IK+W+++ TL GH + + V FH
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 111 YGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
G ++ S + D +++WD + K C+ T H + S+ F ++ +G D V++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
Score = 110 bits (274), Expect = 6e-27
Identities = 64/341 (18%), Positives = 126/341 (36%), Gaps = 36/341 (10%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
H + V + V+ + +D + +W + +L GH+ V+ + F +
Sbjct: 13 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 71 ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLR 130
+ L++ +IK+W+ RT++GH +++SV P GD++ S S D IK+W+++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 131 RKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPL 190
C+ T+ GH + + +R + DG IAS D VR+ + +V +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 191 GTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIA 250
P SS+ + + +KS G + ++
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-------------------------- 225
Query: 251 NPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLE 310
D + + T V + + S + D+T+ WD +
Sbjct: 226 ---DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-----SCADDKTLRVWDYK 277
Query: 311 KFSLVSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWE 351
+ T + + L F + ++ G + V WE
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE 317
Score = 87.9 bits (216), Expect = 2e-19
Identities = 61/306 (19%), Positives = 110/306 (35%), Gaps = 12/306 (3%)
Query: 83 KIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS 142
K W P + L+GH+S +T V FHP + S S D+ IK+WD T +GH+
Sbjct: 1 KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 143 KSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYT---- 198
S+ I F G+ +AS D +++ V + P
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119
Query: 199 SSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAE-----SEDQAGEEELFATIANPC 253
S ++ + G + + + R ++ S DQ + AT
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179
Query: 254 DYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFS 313
+ ++ + S+S + S +S L + S D+T+ WD+
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-DKTIKMWDVSTGM 238
Query: 314 LVSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVYGWEPARQYDAQPMGWGKVQDLAVT 372
+ T + + +R + F GG+ +L + L+V+ ++ R V L
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298
Query: 373 GTQLWF 378
T +
Sbjct: 299 KTAPYV 304
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 123 bits (309), Expect = 2e-31
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 2/143 (1%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKI--W 85
++ +G D LW + + C + +GH + + ++ F + G + ++
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 86 NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
+ + + ITSV F G L +G D +WD + GH +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 146 NSIRFSPDGQWIASGGEDGVVRI 168
+ + + DG +A+G D ++I
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKI 338
Score = 97.9 bits (242), Expect = 1e-22
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNL--WALGKSNCIMSLSGHSTPVESVQFGN 68
F H + +N + +G ATG DD L + S + SV F
Sbjct: 222 FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 69 GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
L AG + +W+ L GH + ++ + G + +GS DSF+K+W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 86.3 bits (212), Expect = 1e-18
Identities = 55/340 (16%), Positives = 98/340 (28%), Gaps = 98/340 (28%)
Query: 14 HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL 73
H A + + G ++L + D K+ +W +N + ++ S+ V + + +
Sbjct: 54 HLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 74 SAGCQSGSIKIWNL---------------------------------------------A 88
+ G I+NL
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 89 VPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSI 148
T GH + S+ P SG+ D+ KLWD+R C T+ GH IN+I
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 149 RFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTS 208
F P+G A+G +D R+ + D +SV FS +
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---------NIICGITSVSFSKSGR 283
Query: 209 LRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLNRS 268
L + G +V + + + H +
Sbjct: 284 LLLA------GYDDFNCNVWDALKADR--------------------AGVLAGHDN---- 313
Query: 269 GTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWD 308
V + L + + + S D + W+
Sbjct: 314 ----RV----SCLGVTDDGMAVA-----TGSWDSFLKIWN 340
Score = 66.7 bits (161), Expect = 3e-12
Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 8/302 (2%)
Query: 49 NCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDF 108
+L GH + ++ +G L + Q G + IW+ + S + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 109 HPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
P G+Y+ G LD+ +++L+ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 169 GASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVT 228
A + + + + + + S R G +
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 229 RIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSP 288
+ NA G FAT ++ + + + TS+S
Sbjct: 226 ESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 289 MLCFILTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVY 348
+L + D N WD K + + + L ++ G + G + +
Sbjct: 284 LLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLK 337
Query: 349 GW 350
W
Sbjct: 338 IW 339
Score = 66.3 bits (160), Expect = 4e-12
Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 12/248 (4%)
Query: 134 CIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTP 193
T RGH I ++ + D + + S +DG + I T +H +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLII--WDSYTTNKVHAIP-------LRS 97
Query: 194 PPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPC 253
T + S N + + N
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 254 DYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFS 313
S+ + + + + ++ S L S + D + WD+ +
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 314 LVSTTEKNSSTIRRLTFSEGGECLLGGDTEG---LKVYGWEPARQYDAQPMGWGKVQDLA 370
T + S I + F G G + L + + + ++
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 371 VTGTQLWF 378
+ +
Sbjct: 278 FSKSGRLL 285
Score = 65.5 bits (158), Expect = 7e-12
Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 12/262 (4%)
Query: 92 VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFS 151
+RTL GH + I ++ + L S S D + +WD ++ S + + ++
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 152 PDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRK 211
P G ++A GG D + + T V +S T + + +
Sbjct: 107 PSGNYVACGGLDNICS----IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 SFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLNRSGTC 271
T + T + + + ++ CD SA R T
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 272 VPVSVSRTSLSILPQSPMLCFILTTSSSADRTV--NFWDLEKFSLVSTTEKNSSTIRRLT 329
++ P + S D T ++ + + + I ++
Sbjct: 223 TGHESDINAICFFPNGNAFA-----TGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 330 FSEGGECLLGGDTEGLKVYGWE 351
FS+ G LL G + W+
Sbjct: 278 FSKSGRLLLAGYDDF-NCNVWD 298
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 104 bits (258), Expect = 2e-24
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 25/166 (15%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSL-------SGHSTPVESVQFGNGEETLSAGCQSG 80
G+ +A G D+ V +W + L +GH V SV F +++ +G
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276
Query: 81 SIKIWNLAVP------------TVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
S+K+WNL T + T GHK + SV +Y+ SGS D + WD
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336
Query: 129 LRRKGCIYTYRGHSKSINSI------RFSPDGQWIASGGEDGVVRI 168
+ + +GH S+ S+ P+ A+G D RI
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
Score = 86.0 bits (211), Expect = 2e-18
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 19/141 (13%)
Query: 9 EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSN------------CIMSLSG 56
E H SV + + GQ + +G D+ V LW L +N C ++ G
Sbjct: 248 ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306
Query: 57 HSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVD------FHP 110
H V SV +E + +G + + W+ L GH++S+ SV P
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 111 YGDYLCSGSLDSFIKLWDLRR 131
+ +GS D ++W ++
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387
Score = 76.4 bits (186), Expect = 3e-15
Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 46/307 (14%)
Query: 13 AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
+ + + G+ LATG +D+ + +W + +M L GH + S+ + +
Sbjct: 119 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177
Query: 73 LSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
L +G +++IW+L TL+ T G Y+ +GSLD +++WD
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237
Query: 133 GCIYTY-------RGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLS 185
+ GH S+ S+ F+ DGQ + SG D V++ + N S S
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297
Query: 186 LVHPL-GTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEE 244
+ + SV + N S G + +
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILS------GSKDRGVLFWDKKSGNPL-------- 343
Query: 245 LFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTV 304
+ Q HR+ S V V+ S+ P+ + + S D
Sbjct: 344 ------------LMLQGHRN---SVISVAVA---NGSSLGPEYNVFA-----TGSGDCKA 380
Query: 305 NFWDLEK 311
W +K
Sbjct: 381 RIWKYKK 387
Score = 68.7 bits (166), Expect = 9e-13
Identities = 69/350 (19%), Positives = 123/350 (35%), Gaps = 55/350 (15%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTP---------- 60
+ H + V C+ G+ LATG + ++ + + + LS S
Sbjct: 58 SLDHTSVVCCVKF-SNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTS 115
Query: 61 --------VESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYG 112
+ SV F + L+ G + I+IW++ + L GH+ I S+D+ P G
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 113 DYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASF 172
D L SGS D +++WDLR C T DG++IA+G D VR+
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV---- 231
Query: 173 HLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEE 232
+ T V L + GT SV F+ + S G + + ++
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS------GSLDRSVKLWNLQN 285
Query: 233 NAESEDQAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCF 292
+ + + S T + S++ +
Sbjct: 286 --------------------ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL- 324
Query: 293 ILTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLGGDT 342
S S DR V FWD + + + + + +++ + + G +
Sbjct: 325 ----SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Score = 55.2 bits (131), Expect = 1e-08
Identities = 47/319 (14%), Positives = 90/319 (28%), Gaps = 19/319 (5%)
Query: 89 VPTVQRTLNGHKSSITSVDFHPYGD-YLCSGSLDSFIKLWDLRRKGCIY----TYRGHSK 143
VP QR + +D + + L++ I H+
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 144 SINSIRFSPDGQWIASGGEDGVVRIGASFH-----LTNTSIHVVDLSLVHPLGTP-PPQY 197
+ ++FS DG+++A+G S L++ S D ++ +P Y
Sbjct: 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 198 TSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSA 257
SV FS + + + R + + E + F + S
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 258 IFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVST 317
R+G C ++ + SP + + S DR V WD E LV
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFLVER 242
Query: 318 TEKN-------SSTIRRLTFSEGGECLLGGDTEGLKVYGWEPARQYDAQPMGWGKVQDLA 370
+ ++ + F+ G+ ++ G + +
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 371 VTGTQLWFRRVGTWSHQDS 389
F + D
Sbjct: 303 TYIGHKDFVLSVATTQNDE 321
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 92.2 bits (227), Expect = 1e-20
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 27 SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
G + +G D + +W + NCI +L+GH + ++ + L +G ++KIW+
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 243
Query: 87 LAVPT-VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYR-----G 140
+ +Q +K +++ + S D +KLWDL+ I G
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303
Query: 141 HSKSINSIRFSPDGQWIASGGEDG 164
+ IR S A G +G
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNG 327
Score = 77.9 bits (190), Expect = 7e-16
Identities = 57/350 (16%), Positives = 109/350 (31%), Gaps = 39/350 (11%)
Query: 13 AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
H V + G + +G DD + +W+ C+ +L GH+ V S Q +
Sbjct: 14 GHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71
Query: 73 LSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRK 132
S + T + + + T H + + SGS D+ +++WD+
Sbjct: 72 ----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127
Query: 133 GCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGT 192
C++ GH ++ +++ + + SG D +V++ D L T
Sbjct: 128 QCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKV-------------WDPETETCLHT 172
Query: 193 PPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANP 252
+ S G I V +E G + L + +
Sbjct: 173 LQGHTNRVYSLQFDGIHVVS------GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 253 CDYSAIFQPHRSLN----RSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWD 308
+ ++ ++G C+ +SS D TV WD
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 309 LEKFSLVST-----TEKNSSTIRRLTFSEGGECLLGGD---TEGLKVYGW 350
L+ + + + + R+ S G TE K+
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 77.5 bits (189), Expect = 7e-16
Identities = 46/302 (15%), Positives = 82/302 (27%), Gaps = 24/302 (7%)
Query: 85 WNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKS 144
W + L GH + + G+ + SGS D+ +K+W C+ T GH+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 145 INSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFS 204
+ S + + S V + +T L S
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 205 HNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRS 264
+ G A + + + A + + Q H
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTLQGH-- 176
Query: 265 LNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVSTTEKNSST 324
+ + + S S D ++ WD+E + + T + S
Sbjct: 177 ---TNRVYSLQFDGIHV--------------VSGSLDTSIRVWDVETGNCIHTLTGHQSL 219
Query: 325 IRRLTFSEGGECLLGGDTEGLKVYGWEPARQYDAQPMGWGKVQDLAVTGTQLWFRRVGTW 384
+ L+ G+ + V W+ Q + AVT Q V T
Sbjct: 220 TSGMELK--DNILVSGNADS-TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 385 SH 386
S
Sbjct: 277 SD 278
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 85.3 bits (209), Expect = 1e-18
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 35 GDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQR 94
D+ + +W + +L+GH + +Q+ + + +G +I++W++ R
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLR 212
Query: 95 TLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG---------CIYTYRGHSKSI 145
L GH+ + + SG+ D IK+WDL C+ T HS +
Sbjct: 213 VLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270
Query: 146 NSIRFSPDGQWIASGGEDGVVRI 168
++F D I S D + I
Sbjct: 271 FRLQF--DEFQIVSSSHDDTILI 291
Score = 72.6 bits (176), Expect = 2e-14
Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 48/208 (23%)
Query: 2 RAKVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPV 61
R +++ V CL Q + +G D + +W C L+GH+ V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58
Query: 62 ESVQFGNG--------------------------------------EETLSAGCQSGSIK 83
+Q+ + + SI
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 84 IWNLAVPT---VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
+W++A PT ++R L GH++++ VDF SG D IK+W+ + T G
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNG 176
Query: 141 HSKSINSIRFSPDGQWIASGGEDGVVRI 168
H + I + + SG D +R+
Sbjct: 177 HKRGIA--CLQYRDRLVVSGSSDNTIRL 202
Score = 71.0 bits (172), Expect = 7e-14
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 27 SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
+++ +G D + LW + C+ L GH V ++F N + + +G G IK+W+
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWD 244
Query: 87 L---------AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
L A RTL H + + F + S S D I +WD
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
Score = 41.4 bits (95), Expect = 3e-04
Identities = 29/231 (12%), Positives = 56/231 (24%), Gaps = 20/231 (8%)
Query: 134 CIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTP 193
I+ SK + D Q I SG D ++I L L
Sbjct: 7 RIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKI----------WDKNTLECKRILTGH 54
Query: 194 PPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPC 253
S + R + + + E+ +
Sbjct: 55 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 114
Query: 254 DYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFS 313
A++ T + + S+S DRT+ W+
Sbjct: 115 RSIAVWDMASP-----TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE 169
Query: 314 LVSTTEKNSSTIRRLTFSEGGECLLGGDTEG-LKVYGWEPARQYDAQPMGW 363
V T + I L + ++ G ++ ++++ E
Sbjct: 170 FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE 218
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 83.0 bits (203), Expect = 2e-17
Identities = 45/384 (11%), Positives = 85/384 (22%), Gaps = 86/384 (22%)
Query: 13 AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNC------IMSLSGHSTPVESVQF 66
AH A + ++ + D + +W + S H + + V
Sbjct: 12 AHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 67 -------GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP--------- 110
++ SG + + + + + K + D
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 111 ------YGDYLCSGSLDSFIKLWDLRRKG------------------CIYTYRGHSKSIN 146
L + + +W + + S+
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 147 SIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHN 206
S+ S G IA+G +G V+I L SV FS
Sbjct: 189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSPQ 242
Query: 207 TSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLN 266
SL G + E + + + S
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 267 RSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIR 326
+ D + FWD++ ++T + I
Sbjct: 303 TLCSA---------------------------GWDGKLRFWDVKTKERITTLNMHCDDIE 335
Query: 327 R----LTFSEGGECLLGGDTEGLK 346
L E G+ L +K
Sbjct: 336 IEEDILAVDEHGDSLAEPGVFDVK 359
Score = 74.5 bits (181), Expect = 1e-14
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 33/210 (15%)
Query: 7 KAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHST------P 60
E M + + ++ ++ATG ++ V + L + + +
Sbjct: 176 TVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 61 VESVQFGNGEETLSAGCQSGSIKIW----------------NLAVPTVQRTLNGHKSSIT 104
+ SV+F L+ S S H S +
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 105 SVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI----NSIRFSPDGQWIASG 160
S+ F+ G+ LCS D ++ WD++ K I T H I + + G +A
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 161 GEDGVVRI-----GASFHLTNTSIHVVDLS 185
G V + N S+ V L
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNESLCCVCLD 383
Score = 60.3 bits (144), Expect = 4e-10
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 89 VPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGC------IYTYRGHS 142
+ T H + I SV + S S D ++K+WD + Y++ H
Sbjct: 4 IATAN-AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 143 KSINSIRF-------SPDGQWIASGGEDGVVRI 168
++ + + + +A+ G +
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 81.4 bits (199), Expect = 4e-17
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 99 HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIA 158
H+S + S+ F G + S D+ + W I+ S S+ S S D ++I
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322
Query: 159 SGGEDGVVRI 168
+G D +
Sbjct: 323 TGSGDKKATV 332
Score = 69.1 bits (167), Expect = 4e-13
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 49 NCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDF 108
L H + V S++F + + + + W SS+ S D
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI 314
Query: 109 HPYGDYLCSGSLDSFIKLWDL 129
Y+ +GS D ++++
Sbjct: 315 SVDDKYIVTGSGDKKATVYEV 335
Score = 67.5 bits (163), Expect = 2e-12
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 57 HSTPVESVQF-GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL 115
S P S +G+ I TL H + +V ++
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66
Query: 116 CSGSLDSFIKLWDL-----RRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDG 164
+G +K+WD+ + I S + PDG + GGE
Sbjct: 67 YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Score = 67.1 bits (162), Expect = 2e-12
Identities = 43/332 (12%), Positives = 96/332 (28%), Gaps = 24/332 (7%)
Query: 27 SGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWN 86
GQ+ + + + ++ H V +V N + G + G +K+W+
Sbjct: 20 DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVKVWD 78
Query: 87 LA-----VPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGH 141
++ P Q + I S P G L G S + +WDL
Sbjct: 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Query: 142 SKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSV 201
S + + + N ++ + + S +
Sbjct: 139 SSAPACYALAISPDSK---------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
Query: 202 PFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESED--QAGEEELFATIANPCDYSAIF 259
S++ + + + + +++++ + G +A + S +
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 260 QPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVSTTE 319
H + SL S+ D +N W + + +
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-----STGKDNLLNAWRTPYGASIFQS- 303
Query: 320 KNSSTIRRLTFSEGGECLLGGDTEGLKVYGWE 351
K SS++ S + ++ G + K +E
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDK-KATVYE 334
Score = 53.7 bits (127), Expect = 4e-08
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
H + V L G+ + G D +N W I S+ V S +
Sbjct: 261 LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318
Query: 71 ETLSAGCQSGSIKIWNL 87
+ + G ++ +
Sbjct: 319 KYIVTGSGDKKATVYEV 335
Score = 51.3 bits (121), Expect = 3e-07
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 98 GHKSSITSVDFHPYGD---YLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDG 154
G S + FH D D+ I R I T H + + ++ S
Sbjct: 5 GAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT 63
Query: 155 QWIASGGEDGVVRI 168
+ + +GG G V++
Sbjct: 64 RHVYTGG-KGCVKV 76
Score = 44.0 bits (102), Expect = 5e-05
Identities = 55/306 (17%), Positives = 96/306 (31%), Gaps = 30/306 (9%)
Query: 14 HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCI-----MSLSGHSTPVESVQFGN 68
HG V + + + + TGG V +W + + + S +
Sbjct: 50 HGEVVCAVTISN-PTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 69 GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKS--SITSVDFHPYGDYLCSGSLDSFIKL 126
TL G ++ ++ IW+LA PT + S + ++ P S D I +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSL 186
WDL + + ++GH+ + I S DG + +GG D VR S
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHDFTSQ 226
Query: 187 VHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELF 246
+ LG P +V + K + E S A + F
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK------YQLHLHESCVLSLKFAYCGKWF 280
Query: 247 ATIANPCDYSAIF---QPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRT 303
+ D S+ +S V S I + + S D+
Sbjct: 281 VSTGK--DNLLNAWRTPYGASIFQSKESSSV----LSCDISVDDKYIV-----TGSGDKK 329
Query: 304 VNFWDL 309
+++
Sbjct: 330 ATVYEV 335
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 80.3 bits (196), Expect = 9e-17
Identities = 41/346 (11%), Positives = 96/346 (27%), Gaps = 11/346 (3%)
Query: 14 HGASV-NCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEET 72
H SV CL + TG DDK + ++ ++ LSGH V ++++ +G
Sbjct: 11 HMTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 73 LSAGCQSGSIKIWNLAVPTVQRTLNGHKS-SITSVDFHPYGDYLCSGSLDSFIKLWDLRR 131
+S + + + + Y+ +GS D+ + +W L +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 132 KGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLG 191
+ + + + + + + N + + +
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187
Query: 192 TPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIAN 251
+ + + + R A +D T + E+ + + +
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247
Query: 252 PCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTT-----SSSADRTVNF 306
S F + + S + S + S ++ N
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 307
Query: 307 WDLEKFSLVSTT-EKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWE 351
++L LV K++ I + F + +
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353
Score = 76.5 bits (186), Expect = 2e-15
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 93 QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
+ TL GH +S+ + +Y+ +G+ D I+++D K + GH + +++++
Sbjct: 5 RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 153 DGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLR 210
G ++ + V + ++ V S + +L
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121
Score = 48.0 bits (112), Expect = 3e-06
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMS-LSGHSTPVESVQFGNG 69
F H +++ + S +L +G ++ + N++ L + + + + + SV F G
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNF-KG 334
Query: 70 EETLSAGCQSGSIKIWNL 87
+ ++A + G + L
Sbjct: 335 KTLVAAVEKDGQSFLEIL 352
Score = 38.3 bits (87), Expect = 0.003
Identities = 7/67 (10%), Positives = 22/67 (32%)
Query: 297 SSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPARQY 356
+ + D+ + +D + + + L ++ GG + G ++V+ +
Sbjct: 28 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 87
Query: 357 DAQPMGW 363
Sbjct: 88 HVFEGHN 94
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 80.3 bits (196), Expect = 1e-16
Identities = 13/155 (8%), Positives = 34/155 (21%), Gaps = 18/155 (11%)
Query: 28 GQVLATGGDDKKVNLW-------ALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSG 80
+ L + + + + T AG
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 81 SIKIWNLAVPTV-------QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG 133
+ + V L + + Y + +D++ +
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 134 CIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
++ +R S D + + +DG +
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
Score = 59.5 bits (142), Expect = 6e-10
Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 26 KSGQVLATGGDDKKVNLW-ALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKI 84
++G+ + + G I+ L G + G +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302
Query: 85 WNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYT 137
+++ R + K+++T + + D I + L + T
Sbjct: 303 YDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
Score = 47.9 bits (112), Expect = 3e-06
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 102 SITSVDFHPY-GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASG 160
S + DF P GD + S + D+ + I +R D +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIH 60
Query: 161 GEDGVVRI 168
G +
Sbjct: 61 GTREGDFL 68
Score = 46.0 bits (107), Expect = 1e-05
Identities = 13/118 (11%), Positives = 26/118 (22%), Gaps = 8/118 (6%)
Query: 51 IMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHP 110
I + + + G +I ++++ + S + F
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188
Query: 111 YGDYLCSGSLDSFIKLWDLRRKGC-------IYTYRGHSKSINSIRFSPDGQWIASGG 161
L S S D + S N + P +G
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246
Score = 42.2 bits (97), Expect = 2e-04
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 26 KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
+ + + + + ++ + ++ +T+ G I +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
Query: 86 NLAVPTVQRTLNGHKSSI 103
L P +RT+ K +
Sbjct: 342 PLEKPEDERTVETDKRPL 359
Score = 40.2 bits (92), Expect = 8e-04
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 80 GSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDS--FIKLWDLRRKGCIYT 137
G I +++ V + I V F+ ++D R G
Sbjct: 24 GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEK 80
Query: 138 YRGHSKSINSIRFSPDGQW 156
+ + ++ ++ +G++
Sbjct: 81 FEENLGNVFAMGVDRNGKF 99
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 80.7 bits (197), Expect = 1e-16
Identities = 7/72 (9%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 99 HKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKG--CIYTYRGHSKSINSIRFSPDGQW 156
I+ ++ + + + +++ ++ + H+ + + ++PD
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 157 IASGGEDGVVRI 168
I + G D +
Sbjct: 66 IVTCGTDRNAYV 77
Score = 68.0 bits (164), Expect = 1e-12
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 55 SGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLA--VPTVQRTLNGHKSSITSVDFHPYG 112
S P+ + ++ + + I+ + L H +T VD+ P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 113 DYLCSGSLDSFIKLWDLRRKGCIYTYRGH 141
+ + + D +W L+ + T
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92
Score = 64.5 bits (155), Expect = 2e-11
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 10/182 (5%)
Query: 10 DFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNG 69
+ + V+ + +G +A D V L K + +L+ + P+ +V F
Sbjct: 196 ESSSSCGWVHGVC-FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 254
Query: 70 EETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDL 129
++AG ++ + + G +LD
Sbjct: 255 SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG- 312
Query: 130 RRKGCIYTYRGHSKSINSIRFSPDGQW----IASGGEDGVVRIGASFHLTNTSIHVVDLS 185
H S++ I G+ + G DG + I + + + + DL
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI---WDVRSLESALKDLK 369
Query: 186 LV 187
+V
Sbjct: 370 IV 371
Score = 62.6 bits (150), Expect = 7e-11
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 9/160 (5%)
Query: 17 SVNCLALGKKSGQVLATGGDDKKVNLWAL--GKSNCIMSLSGHSTPVESVQFGNGEETLS 74
++C A K +A ++ +V+++ K + L H+ V V + +
Sbjct: 9 PISCHAW-NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 75 AGCQSGSIKIWNLAVPTVQRTLNGH--KSSITSVDFHPYGDYLCSGSLDSFIKLWDL--- 129
+ +W L T + TL + V + P GS I +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 130 -RRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
C + + ++ S+ + P+ +A+G D RI
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167
Score = 51.0 bits (120), Expect = 4e-07
Identities = 46/373 (12%), Positives = 91/373 (24%), Gaps = 119/373 (31%)
Query: 4 KVEKAEDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLW-------------------- 43
K + + H V + + T G D+ +W
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA 98
Query: 44 ----------------------------ALGKSNCIMSLSGHSTPVESVQFGNGEETLSA 75
C + V S+ + L+A
Sbjct: 99 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158
Query: 76 GCQSGSIKIWNLAVPTVQR------------------TLNGHKSSITSVDFHPYGDYLCS 117
G +I++ + V+ + + V F G +
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218
Query: 118 GSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNT 177
S DS + L D +K + T + + ++ F + +A+G + V
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF-------TY 271
Query: 178 SIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESE 237
LS L P+ +S + + K G+ A
Sbjct: 272 DSAAGKLSFGGRLDV--PKQSSQRGLTARERFQNLDKKASSEGSAAA------------- 316
Query: 238 DQAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTS 297
+ + H++ S + +S+L C T+
Sbjct: 317 -----------------GAGLDSLHKN------------SVSQISVLSGGKAKCSQFCTT 347
Query: 298 SSADRTVNFWDLE 310
D ++ WD+
Sbjct: 348 GM-DGGMSIWDVR 359
Score = 42.5 bits (98), Expect = 1e-04
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 137 TYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
+ + I+ ++ D IA + V I
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHI 33
Score = 37.1 bits (84), Expect = 0.008
Identities = 7/111 (6%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 279 TSLSILPQSPMLCFILTTSSSADRTVNFWDLE--KFSLVSTTEKNSSTIRRLTFSEGGEC 336
+ + + + V+ ++ K+ V ++++ + + ++
Sbjct: 11 SCHAWNKDRTQIA-----ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 337 LLGGDTEGLKVYGWEPARQYDAQPMGWGKVQDLAVTGTQLWFRRVGTWSHQ 387
++ T+ Y W + + ++ A +
Sbjct: 66 IVTCGTDR-NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 74.3 bits (180), Expect = 6e-15
Identities = 39/293 (13%), Positives = 81/293 (27%), Gaps = 35/293 (11%)
Query: 91 TVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYR-GHSKSINSIR 149
++ + GH +IT++ G L S + I WD+ + H+ I I+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 150 FSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLG------------------ 191
+ G +D + + A ++S V + PLG
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 192 -------------TPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESED 238
+ + ++ +K +E
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 239 QAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSS 298
+ D S P+ N S + + + S + +
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 299 SADRTVNFWDLEKFSLVSTTEKNS---STIRRLTFSEGGECLLGGDTEGLKVY 348
S D +V W++ K S K + S++ + + + G +K +
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Score = 52.7 bits (124), Expect = 7e-08
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 75 AGCQSGSIKIWNLAVPTVQRTL--NGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDL 129
G S+ +WN+ P+ + H S + + S DS IK W++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 51.5 bits (121), Expect = 2e-07
Identities = 31/300 (10%), Positives = 80/300 (26%), Gaps = 17/300 (5%)
Query: 14 HGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLS-GHSTPVESVQFGNGEET 72
H ++ L+ G+ L + + +N W + H+T + ++ +
Sbjct: 11 HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGD 68
Query: 73 LSAGCQSGSIKIWNL---AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDL 129
L +K+ V + + N S + GD +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 130 RRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHP 189
+ +Y ++++ + + L+ S+ V +
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQ--------DSKVHVYKLSGASVSEVKTIVHPA 180
Query: 190 LGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATI 249
T + RK + + A+ + +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 250 ANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDL 309
D S I + + + + +S++ + + S+ D + FW++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV---SAGQDSNIKFWNV 297
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 74.5 bits (181), Expect = 8e-15
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 94 RTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYR---GHSKSINSIRF 150
+ K I+ + P L S D + ++ + + + F
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 151 SPDGQWIASGG 161
+ G
Sbjct: 65 IDNTDLQIYVG 75
Score = 72.2 bits (175), Expect = 4e-14
Identities = 18/177 (10%), Positives = 50/177 (28%), Gaps = 25/177 (14%)
Query: 36 DDKKVNLWALGKSNCI----MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPT 91
++ +V + L + +E + G + +
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 92 ---------------VQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIY 136
+ + S++F P +L + D I W+L+ + I
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Query: 137 TYRGHSKSINSIRFSPDGQWIASGGEDGVVRI----GASFHLTNTSIHVVDLSLVHP 189
+ + + ++ + + D + + L +SI+++ +P
Sbjct: 288 NFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIF-DYENP 342
Score = 54.1 bits (128), Expect = 3e-08
Identities = 43/335 (12%), Positives = 94/335 (28%), Gaps = 36/335 (10%)
Query: 13 AHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSL---SGHSTPVESVQFGNG 69
A ++ + + S +L D + ++ + L + P+ F +
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 70 EETL--SAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLW 127
+ Q +K+ + P+ Q N + D L + S D I++
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 128 DLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLV 187
D R G + S N+ + + + N+ + L L
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-------RLIVGMNNSQVQWFRLPLC 180
Query: 188 HPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFA 247
+ L K ++ V ++ + + +
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA--- 237
Query: 248 TIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFW 307
F+ HR + S+ P+ L +D ++ W
Sbjct: 238 -----------FRCHRLNLKDTNLA---YPVNSIEFSPRHKFLYTA-----GSDGIISCW 278
Query: 308 DLEKFSLVSTTEK-NSSTIRRLTFSEGGECLLGGD 341
+L+ + K N ++ ++ S+ CL D
Sbjct: 279 NLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Score = 53.3 bits (126), Expect = 6e-08
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 4/97 (4%)
Query: 49 NCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTL---NGHKSSITS 105
+ + ++ + L GS+ ++ + L +K +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 106 VDFHPYGD-YLCSGSLDSFIKLWDLRRKGCIYTYRGH 141
+F D + G++ I DL +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN 98
Score = 52.5 bits (124), Expect = 1e-07
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 134 CIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
+ + I+ I+ P + DG + +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTV 37
Score = 44.8 bits (104), Expect = 3e-05
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 9 EDFMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGN 68
VN + + + L T G D ++ W L I + + + V+
Sbjct: 245 LKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC 302
Query: 69 GEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDF--HP 110
+ L + K + +T+ + SSI + +P
Sbjct: 303 SDNILCLATSDDTFKTNAA----IDQTIELNASSIYIIFDYENP 342
Score = 36.8 bits (83), Expect = 0.011
Identities = 24/211 (11%), Positives = 57/211 (27%), Gaps = 15/211 (7%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWAL-GKSNCIMSLSGHSTPVESVQFGNG 69
+ + + C + + G ++ L G + + + G
Sbjct: 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
Query: 70 EETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSL------DSF 123
++ L A G I++ + + +S + + + S +S
Sbjct: 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ 171
Query: 124 IKLWDLRRKGCIYTYRGHSKSINSIR----FSPDGQWIASGGEDGVVRI----GASFHLT 175
++ + L S IR + + A DG V +
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Query: 176 NTSIHVVDLSLVHPLGTPPPQYTSSVPFSHN 206
++ ++ T +S+ FS
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 71.9 bits (174), Expect = 4e-14
Identities = 35/287 (12%), Positives = 67/287 (23%), Gaps = 18/287 (6%)
Query: 75 AGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGC 134
C S+ + T H T P G Y SG + +++WD +
Sbjct: 33 QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92
Query: 135 IYT--YRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGT 192
I S + I + + + I +G + L
Sbjct: 93 ILKTTIPVFSGPVKDISWDSESKRI--------AAVGEGRERFGHVFLFDTGTSNGNLTG 144
Query: 193 PPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANP 252
S S + E +
Sbjct: 145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 204
Query: 253 CDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTT------SSSADRTVNF 306
GT V + ++ + + S+SAD+T+
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 307 WDLEKFSLVSTTEKNSS-TIRRLTFSEGGECLLGGDTEGLKVYGWEP 352
W++ + T + ++L + L+ G + P
Sbjct: 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG-FINFVNP 310
Score = 70.3 bits (170), Expect = 1e-13
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 90 PTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIR 149
P++ RT G + P GD + + S + + Y HS +
Sbjct: 10 PSLPRTARGT---AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAK 65
Query: 150 FSPDGQWIASGGEDGVVRI 168
SP G + ASG G VRI
Sbjct: 66 TSPSGYYCASGDVHGNVRI 84
Score = 55.7 bits (132), Expect = 9e-09
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 71 ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKS-SITSVDFHPYGDYLCSGSLDSFIKLWDL 129
+++ +IKIWN+A V++T+ + L S S + FI +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 48.4 bits (113), Expect = 2e-06
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 26 KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHS-TPVESVQFGNGEETLSAGCQSGSIKI 84
G +A+ DK + +W + ++ + + + ++ L + +G I
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 85 WNL 87
N
Sbjct: 308 VNP 310
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 68.4 bits (165), Expect = 5e-13
Identities = 35/304 (11%), Positives = 78/304 (25%), Gaps = 21/304 (6%)
Query: 46 GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITS 105
G + ++SGH+ + ++ L +G G I W+ H + I S
Sbjct: 1 GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWS-----SSSMHQDHSNLIVS 51
Query: 106 VDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGV 165
+D +Y WD K T + DG +D +
Sbjct: 52 LDNSKAQEYSSIS--------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103
Query: 166 VRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKI 225
+ + + S+ + L + T +
Sbjct: 104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163
Query: 226 DVTRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILP 285
+ I + S + + S T ++S
Sbjct: 164 KPSYI---SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 220
Query: 286 QSPMLCFILTTSSSADRTVNFWDLEKFS-LVSTTEKNSSTIRRLTFSEGGECLLGGDTEG 344
+ L + S D + + +++ ++ + + L + + G
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADAC 280
Query: 345 LKVY 348
+K +
Sbjct: 281 IKRW 284
Score = 58.4 bits (139), Expect = 9e-10
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 36 DDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVP-TVQR 94
+ +++ I ++S + + E+ ++ G +I I+++ P + +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 95 TLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD 128
LN HK + ++ + L S D+ IK W+
Sbjct: 253 ALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
Score = 49.2 bits (115), Expect = 8e-07
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKS-NCIMSLSGHSTPVESVQFGNG 69
++ + + ++ATG D + ++++ + I +L+ H V ++ +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Query: 70 EETLSAGCQSGSIKIWN 86
+S+G IK WN
Sbjct: 270 STLVSSG-ADACIKRWN 285
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 63.0 bits (151), Expect = 4e-11
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 81 SIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDS-FIKLWDLRRKG--CIYT 137
SI + + +P T T + + P + + S F++ D +
Sbjct: 2 SISLKEI-IPPQPSTQRNF---TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ 57
Query: 138 YRGH-SKSINSIRFSP--DGQWIASGGEDGVVR 167
+ GH S + +++FSP Q++ SG E G V
Sbjct: 58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90
Score = 61.9 bits (148), Expect = 9e-11
Identities = 41/298 (13%), Positives = 76/298 (25%), Gaps = 19/298 (6%)
Query: 68 NGEETLSAGCQSGSIKIWNLAVPTVQ--RTLNGHKSS-ITSVDFHPYGD--YLCSGSLDS 122
+S ++ + V GH SS +T+V F P YLCSG
Sbjct: 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87
Query: 123 FIKLWDLRRKGCIYT--------YRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHL 174
+ +W + ++ + I+ I + +G+ + GE
Sbjct: 88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147
Query: 175 TNTSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENA 234
+ S+ V Q + F +G P A + +
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207
Query: 235 ESEDQAGEEELFATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFIL 294
+ + + I D +S
Sbjct: 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267
Query: 295 TTSSSADRTVNFWDLEKFSLVST----TEKNSSTIRRLTFSEGGECLLGGDTEGLKVY 348
T AD T+ WD+ V ++ + + + G + L Y
Sbjct: 268 T--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 50.7 bits (119), Expect = 3e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFG---NGEETLSAGCQSGSIKI 84
Q AT G D + +W + S C+ + + + Q G G + + G++
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 85 WNL 87
+ L
Sbjct: 323 YEL 325
Score = 49.9 bits (117), Expect = 6e-07
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 71 ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSI--TSVDFHPYGD-YLCSGSLDSFIKLW 127
+ + +I++W++ + K + V G+ + S SLD + +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 128 DL 129
+L
Sbjct: 324 EL 325
Score = 34.9 bits (78), Expect = 0.036
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 15/159 (9%)
Query: 14 HGASVNCLALG-KKSGQVLATGGDDKKVNLWALGKSNCIMSL--------SGHSTPVESV 64
+ V + K Q L +G + KV +W S+ + P+ +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 65 QF--GNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDY----LCSG 118
+ + + + ++GH I + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 119 SLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWI 157
F + + T+ + + FSPD
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Score = 28.3 bits (61), Expect = 4.5
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 14 HGASVNCLALGKKSGQVLATGGDDKKVNLWAL 45
+ + + + D +N + L
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 59.8 bits (143), Expect = 5e-10
Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 3/113 (2%)
Query: 57 HSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQ-RTLNGHKSSITSVDFHPYGDYL 115
S +F + ++ + +L + + P
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266
Query: 116 CSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRI 168
G L+ + +DL+++ I + + F G + GG + +
Sbjct: 267 IYGVLNR-LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
Score = 53.6 bits (127), Expect = 5e-08
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
Q AT L T + + ++ + ++L
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279
Query: 88 AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
+ + N + V F GD L G + + +++ + + +
Sbjct: 280 KQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Score = 43.6 bits (101), Expect = 7e-05
Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 108 FHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYR-GHSKSINSIRFSPDGQWI-ASGGEDGV 165
+Y+ + + + + D+ + + +PD + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 166 VRI 168
+
Sbjct: 64 IYG 66
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 59.4 bits (142), Expect = 6e-10
Identities = 15/141 (10%), Positives = 33/141 (23%), Gaps = 4/141 (2%)
Query: 29 QVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLA 88
+ + + + S + + +L
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227
Query: 89 VPTVQRT-LNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINS 147
+ + S +P + ++ +DL + I S S
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYS 284
Query: 148 IRFSPDGQWIASGGEDGVVRI 168
+ S DG + GG G +
Sbjct: 285 VNVSTDGSTVWLGGALGDLAA 305
Score = 54.8 bits (130), Expect = 2e-08
Identities = 31/311 (9%), Positives = 77/311 (24%), Gaps = 29/311 (9%)
Query: 70 EETLSAGCQSGSIKIWNLAVPTVQRTL--NGHKSSITSVDFHPYGDYLC-SGSLDSFIKL 126
+ + A + + + + V + + + P G + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 127 WDLRRKGCIYTYRGHS-----KSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHV 181
DL + + KS+ SPDG+ +A + +
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 182 VDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSF--------------TKGRPGGTKAKIDV 227
+L P+ + + ++ + S + +P +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 228 TRIEENAESEDQAGEEELFATIANPCDYSAIFQPHRSLN-----RSGTCVPVSVSRTSLS 282
+ + A + P T +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 283 ILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLGGDT 342
+ S + T + A + +DLEK + + + + S G + G
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGA 299
Query: 343 EGLKVYGWEPA 353
G + ++
Sbjct: 300 LG-DLAAYDAE 309
Score = 51.3 bits (121), Expect = 3e-07
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 6/130 (4%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNL 87
+ L M N +T + ++ ++L
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GAYNVLESFDL 267
Query: 88 AVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWD---LRRKGCIYTYRGHSKS 144
+ + S SV+ G + G + +D L +KG + S S
Sbjct: 268 EKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
Query: 145 INSIR-FSPD 153
+ S+R F+ D
Sbjct: 327 LASVRLFTRD 336
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 53.3 bits (126), Expect = 6e-08
Identities = 11/146 (7%), Positives = 34/146 (23%), Gaps = 3/146 (2%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
+ + ++ + L + L + + ++ H +
Sbjct: 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270
Query: 71 ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL--CSGSLDSFIKLWD 128
+ S + + + I S++ L + D + + D
Sbjct: 271 DEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHD 329
Query: 129 LRRKGCIYTYRGHSKSINSIRFSPDG 154
+ + I + G
Sbjct: 330 AESGEELRSVNQLGHGPQVITTADMG 355
Score = 44.0 bits (102), Expect = 6e-05
Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 27/145 (18%)
Query: 28 GQVLATGGDDKKVNLWAL--GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
L K++ L G + + ++ + + + G A ++
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 86 NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSI 145
D + F+ + D + + + I
Sbjct: 266 ----------------------LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI 302
Query: 146 NSIRFSPDGQW--IASGGEDGVVRI 168
+SI S D + A D + I
Sbjct: 303 DSINVSQDEKPLLYALSTGDKTLYI 327
Score = 36.3 bits (82), Expect = 0.013
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 2/93 (2%)
Query: 117 SGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTN 176
+ + + D I G + + + DG +IA
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV 80
Query: 177 TSIHVVDLSLVHPLGTPPPQYTSSVPFSHNTSL 209
V L + P + TSL
Sbjct: 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 113
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 50.6 bits (120), Expect = 6e-07
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 7/134 (5%)
Query: 79 SGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDL-----RRKG 133
+G I + + + ++ L+ + + G YL D + + DL
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 134 CIYTYRGHSKSINSIRFSPDGQW-IASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGT 192
I S + ++ IA I L I
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 193 PPPQYTSSVPFSHN 206
P +++ SH
Sbjct: 160 HPEPRVAAILASHY 173
Score = 39.8 bits (92), Expect = 0.001
Identities = 46/331 (13%), Positives = 84/331 (25%), Gaps = 66/331 (19%)
Query: 85 WNLAVPTVQR----TLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRG 140
W + V R + ++ SV G I L D
Sbjct: 11 WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQ----------IALIDGSTYEIKTVLDT 60
Query: 141 HSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTSS 200
+++ R S G+++ G DG V + + T++ + +G+ +S
Sbjct: 61 G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------KIGSEARSIETS 113
Query: 201 VPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDYSAIFQ 260
A P Y +
Sbjct: 114 KMEGWEDKY-----------------------------------AIAGAYWPPQYVIMDG 138
Query: 261 PHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVSTTEK 320
+ + ++ P + IL + + VN + K LV T+
Sbjct: 139 ETLEPKKIQSTRGMTYDEQE---YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
Query: 321 NSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPARQYDAQPMGWGKVQDLA----VTGTQL 376
N+ ++ L G +G Y A + + K L G
Sbjct: 196 NNLKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 252
Query: 377 WFRRVGTWSHQDSGFSTLDSYSAGSPVSTMG 407
R + H G S+ V+ +G
Sbjct: 253 HPGRGANFVHPTFGPVWATSHMGDDSVALIG 283
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 48.8 bits (115), Expect = 2e-06
Identities = 32/261 (12%), Positives = 63/261 (24%), Gaps = 14/261 (5%)
Query: 79 SGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTY 138
+G I + + + + ++ ++ G YL D+ I + DL K
Sbjct: 41 AGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99
Query: 139 R-----GHSKSINSIRFSPDGQW-IASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGT 192
+S + ++ IA I L I V
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159
Query: 193 PPPQYTSSVPFSHNTSLRKSFTKGR------PGGTKAKIDVTRIEENAESEDQA-GEEEL 245
P +++ SH K + VT I D
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR 219
Query: 246 FATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVN 305
+ A + S P + +TS D +++
Sbjct: 220 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 279
Query: 306 FWDLEKFSLVSTTEKNSSTIR 326
+ + K + ++
Sbjct: 280 LIGTDPKNHPQYAWKKVAELQ 300
Score = 44.9 bits (105), Expect = 3e-05
Identities = 28/204 (13%), Positives = 49/204 (24%), Gaps = 34/204 (16%)
Query: 11 FMAHGASVNCLALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGE 70
A S + K ++ A K + + PV S
Sbjct: 222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-----GANFVHPKYGPVWSTSHLGDG 276
Query: 71 ETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLC-------SGSLDSF 123
G + + L G + HP +L +
Sbjct: 277 SISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 124 IKLWDLRRKGCIYTYRGHS---------KSINSIRFSPDGQ------WIASGGEDGVVRI 168
+ ++DL+ Y + K + ++ G W +V +
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
Query: 169 GASFHLTNTSIHVV-DLSLVHPLG 191
T VV D L+ P G
Sbjct: 394 DDK---TLKLKAVVKDPRLITPTG 414
Score = 41.1 bits (95), Expect = 5e-04
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 114 YLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFH 173
+ + I L D K + +++ R S G+++ G D + + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA 92
Query: 174 LTNTSIHVVDLSLVH 188
T + + + +
Sbjct: 93 KEPTKVAEIKIGIEA 107
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 48.5 bits (114), Expect = 2e-06
Identities = 19/172 (11%), Positives = 35/172 (20%), Gaps = 26/172 (15%)
Query: 24 GKKSGQVLATGGDDKKVNLWAL--GKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGS 81
+ V K S + + + G +A +
Sbjct: 171 ASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQN 230
Query: 82 IKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGH 141
V + T HK P + +
Sbjct: 231 R----YYVLMHKGTDGSHKD--------PGTQVWVYDLKSKQRVARWDLAQQKV------ 272
Query: 142 SKSINSIRFSPDGQ--WIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLG 191
+ + SI+ S D + + +V + A T HV
Sbjct: 273 -EPLVSIQVSEDDKPLFYGLTATSDLVVMDAR---TGALQHVEKQIGNTSSL 320
Score = 44.6 bits (104), Expect = 3e-05
Identities = 17/166 (10%), Positives = 44/166 (26%), Gaps = 9/166 (5%)
Query: 21 LALGKKSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSG 80
G+ L ++ + + LS T + + G++ +A C+SG
Sbjct: 79 NTAFSADGKRLYVANITPAASVTVI-DAVSKKMLSEIDTAACVLAYPAGDDRFTALCESG 137
Query: 81 -SIKIWNLAVPTVQRTLN---GHKSSITSVDFHP--YGDYLCSGSLDSFIKLWDL--RRK 132
++ + A + + Y + ++ D +
Sbjct: 138 KALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKP 197
Query: 133 GCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTS 178
+ + + + + P G + T+ S
Sbjct: 198 AFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMHKGTDGS 243
Score = 42.3 bits (98), Expect = 2e-04
Identities = 22/234 (9%), Positives = 48/234 (20%), Gaps = 13/234 (5%)
Query: 126 LWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLS 185
++D K + G +PD + + I L
Sbjct: 2 VYDADAKKLLGQIDGGF--GPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLD 59
Query: 186 LVH--PLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEE 243
+ Q+ S + ++ K + + + + SE
Sbjct: 60 HAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAAC 119
Query: 244 ELF------ATIANPCDYSAIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFI-LTT 296
L A A+ + + +
Sbjct: 120 VLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYL 179
Query: 297 SSSADRTVNFWDLE--KFSLVSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVY 348
++ V D K + + R + GG + + Y
Sbjct: 180 FTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYY 233
Score = 27.6 bits (60), Expect = 6.6
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 10/81 (12%)
Query: 28 GQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETL--SAGCQSGSIKIW 85
QV K+ + L S+Q ++ L S + +
Sbjct: 249 TQVWVYDLKSKQRVARWDLAQQKVEPL-------VSIQVSEDDKPLFYGLTATSDLV-VM 300
Query: 86 NLAVPTVQRTLNGHKSSITSV 106
+ +Q ++ + +
Sbjct: 301 DARTGALQHVEKQIGNTSSLL 321
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 48.0 bits (114), Expect = 3e-06
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 27/161 (16%)
Query: 26 KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
K+G G V + G+S + P +G+ ++ G S ++ +
Sbjct: 227 KAGNFKTIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVI 285
Query: 86 NLA-VPTVQRTLNGHKSSIT----------SVDFHPYGDYLCSGSLDSFIKLWDL----- 129
+ + + + +I F G+ + +DS + W++
Sbjct: 286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK 345
Query: 130 ----------RRKGCIYTYRGHSKSINSIRFSPDGQWIASG 160
R+K + GH+ + + DG+W+
Sbjct: 346 HYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386
Score = 33.0 bits (75), Expect = 0.16
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 20/142 (14%)
Query: 30 VLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAV 89
+GG +V + + +M + PV +V G G + S +I
Sbjct: 13 GFWSGGHQGEVRVLGVPSMRELMRI-----PVFNVDSATG-----WGITNESKEILG--- 59
Query: 90 PTVQRTLNG--HKSSITSVDFHPYGDYLC-SGSLDSFIKLWDLRRKGCIYTYR-GHSKSI 145
Q+ LNG H I+ D G YL + ++ + L + ++I
Sbjct: 60 -GDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAI 118
Query: 146 NSIRFSPDGQ--WIASGGEDGV 165
+ +R + ++ E +
Sbjct: 119 HGLRLQKVPKTNYVFCNAEFVI 140
Score = 32.2 bits (73), Expect = 0.25
Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 23/128 (17%)
Query: 79 SGSIKIWNLAV-PTVQRTLNGHKSSITSVDFHPYGDYL---CSGS----LDSFIKLWDLR 130
+ + L + T + T + +I + C+ + + L
Sbjct: 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD 152
Query: 131 RKGCIYTYRGHSKS-----------INSIRFSPDGQWIAS---GGEDGVVRIGASFHLTN 176
++T +++ G++ S E V G + +
Sbjct: 153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD 212
Query: 177 TSIHVVDL 184
+ V ++
Sbjct: 213 W-VVVFNV 219
Score = 27.9 bits (62), Expect = 5.3
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 98 GHKSSITSVDFHPYGDYLCSG---SLDSFI 124
GH + + G +L S D F+
Sbjct: 366 GHNHASLTESRDADGKWLVVLSKFSKDRFL 395
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 44.2 bits (103), Expect = 5e-05
Identities = 17/163 (10%), Positives = 43/163 (26%), Gaps = 24/163 (14%)
Query: 26 KSGQVLATGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIW 85
+ A+ +G + ++ Q + A S
Sbjct: 183 CPASLAASDLAAAPAAAGIVGAQ----CTGAQNCSSQAAQANYPGMLVWAVASSILQGDI 238
Query: 86 NLAVPTVQRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRG----- 140
A T++ ++G++S + +F G + + ++ +
Sbjct: 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298
Query: 141 -------------HSKSINSIRFSPDGQW--IASGGEDGVVRI 168
+ ++I + DG A+ V+ I
Sbjct: 299 VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341
Score = 35.3 bits (80), Expect = 0.026
Identities = 19/317 (5%), Positives = 59/317 (18%), Gaps = 66/317 (20%)
Query: 79 SGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLC----------SGSLDSFIKLWD 128
+ + G S G G +++++D
Sbjct: 45 TTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102
Query: 129 LRRKGCIYTYRGHSK-------SINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHV 181
I ++ I + +++
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG------------SSAAAG 150
Query: 182 VDLSLVHPLGTPPPQYTSSVPFSHNTSLRKSFTKGRPGGTKAKIDV---TRIEENAESED 238
+ + + + + G + A D+ ++
Sbjct: 151 LSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206
Query: 239 QAGEEELFATIANPCDYSAIFQPHRSLN----RSGTCVPVSV----------------SR 278
+ ++ S+ + +
Sbjct: 207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266
Query: 279 TSLSILPQSPMLCFIL----TTSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGG 334
++ L + + + + +A + N + ++ G
Sbjct: 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDG 325
Query: 335 ECLL---GGDTEGLKVY 348
TE L +Y
Sbjct: 326 ASDNYANSAGTEVLDIY 342
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 40.2 bits (92), Expect = 7e-04
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 117 SGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRI 168
+ S I + D+ T S + SPDG + + V I
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSI 58
Score = 35.2 bits (79), Expect = 0.023
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 127 WDLRRKGCIYTYRGHSKSINSIRFSPDGQWI-ASGGEDGVVRI 168
D I +PDG+ + + V +
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSV 270
Score = 34.5 bits (77), Expect = 0.044
Identities = 5/64 (7%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 75 AGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYL-CSGSLDSFIKLWDLRRKG 133
++ + + + + + P G + + S + + + D
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
Query: 134 CIYT 137
T
Sbjct: 278 ITAT 281
Score = 32.2 bits (71), Expect = 0.23
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 296 TSSSADRTVNFWDLEKFSLVSTTEKNSSTIRRLTFSEGGECLLGGDTEGLKVYGWEPARQ 355
++S ++ D+ + +T S S G + + V + A
Sbjct: 6 IANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 356 YDAQPMGW 363
+
Sbjct: 65 NVIATVPA 72
Score = 30.6 bits (67), Expect = 0.71
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 43 WALGKSNCIMSLSGHSTPVESVQFG-NGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKS 101
G + + P + +G++ A ++ + + A T+ T+
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA---- 283
Query: 102 SITSVDFHPYG 112
V +PY
Sbjct: 284 ----VGKNPYA 290
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.5 bits (85), Expect = 0.005
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 117 SGSLDSFIKLWDLRRKGCIYTYR--GHSKSINSIRFSPDGQWIASGGEDG 164
+ I +W+L +G + + + + SPD +++ G
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE 58
Score = 35.2 bits (79), Expect = 0.027
Identities = 9/116 (7%), Positives = 26/116 (22%), Gaps = 3/116 (2%)
Query: 52 MSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPY 111
M + V N + + + + + +
Sbjct: 182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241
Query: 112 GDYLCSGSLDSFIKLWDLRRKGCIYTYRGHS---KSINSIRFSPDGQWIASGGEDG 164
S I ++ + G + + G G+++ + G+
Sbjct: 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS 297
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 36.6 bits (83), Expect = 0.011
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 63 SVQFGNGEETLSAGCQSGSIKIWNLA-----VPTVQRTLNGHKSSITSVDFHPYGDYLCS 117
S+++ + E L Q +I ++N V T + SI P G ++
Sbjct: 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILL 78
Query: 118 GSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIASGGED 163
+++K W Y + + + + P+ +
Sbjct: 79 EY--NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPV 122
Score = 30.8 bits (68), Expect = 0.80
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 104 TSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIA 158
P G L L + K+ L + S+ FS + ++
Sbjct: 382 NEYKGMPGGRNLYKIQLSDYTKVTCLSCEL-----NPERCQYYSVSFSKEAKYYQ 431
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 32.9 bits (73), Expect = 0.12
Identities = 15/153 (9%), Positives = 35/153 (22%), Gaps = 10/153 (6%)
Query: 33 TGGDDKKVNLWALGKSNCIMSLSGHSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTV 92
TG + V A G+ + ++T S + N+
Sbjct: 104 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 163
Query: 93 QRTLNGHKSSITSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSP 152
QR + + + S + + + +P
Sbjct: 164 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAP 223
Query: 153 DGQWIASGGEDGVVRIGASFHLTNTSIHVVDLS 185
+G + G + +++V
Sbjct: 224 NGTMVIYSSSQG----------MGSVLNLVSTD 246
Score = 27.1 bits (58), Expect = 8.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 141 HSKSINSIRFSPDGQWIA 158
+ + S +SPDG +A
Sbjct: 37 SPQPLMSPAWSPDGSKLA 54
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 32.4 bits (72), Expect = 0.17
Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 3/199 (1%)
Query: 140 GHSKSINSIRFSPDGQWIASGGEDGVVRIGASFHLTNTSIHVVDLSLVHPLGTPPPQYTS 199
+ IN+ RF PDG+ IA G A + N + + + +
Sbjct: 38 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFT 97
Query: 200 SVPFSHNTSLRKSFTKGRPGGTKAKIDVTRIEENAESEDQAGEEELFATIANPCDY---S 256
V T + + A+ +
Sbjct: 98 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 157
Query: 257 AIFQPHRSLNRSGTCVPVSVSRTSLSILPQSPMLCFILTTSSSADRTVNFWDLEKFSLVS 316
PH R GT + + S + M + + R D++ F +
Sbjct: 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIY 217
Query: 317 TTEKNSSTIRRLTFSEGGE 335
+T+ + +R+ T
Sbjct: 218 STDLDGKDLRKHTSFTDYY 236
Score = 30.9 bits (68), Expect = 0.61
Identities = 10/111 (9%), Positives = 24/111 (21%), Gaps = 9/111 (8%)
Query: 57 HSTPVESVQFGNGEETLSAGCQSGSIKIWNLAVPTVQRTLNGHKSSITSVDFHPYGDYLC 116
+ P + F +G + + + + + +
Sbjct: 138 NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 197
Query: 117 SGSLDSFIKLWDLRRKGCIYTYR---------GHSKSINSIRFSPDGQWIA 158
+ D+ G IY+ + DG+ I
Sbjct: 198 VIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRIL 248
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 29.8 bits (66), Expect = 1.00
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 12/176 (6%)
Query: 396 SYSAGSPVSTMGRERDQIVPMNLSAPIGLDMEQFLPKSYQTHQGKSSMSESELMSTIFNG 455
+Y+ G+ ++GR + + I LD +Q + KS +S+ E+ T+
Sbjct: 10 AYALGA---SLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAF 66
Query: 456 HDKMMAVLRNRQRSLGLVYMAVNNKNME--AGIDTALSMNDGTVMIDLFKSMLGQGYKKC 513
++ + + + A + E A + + G V G+G +
Sbjct: 67 EARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVY---QVVEAGKG-EAP 122
Query: 514 VKVYNALMPVKSVLL--KKQTVQGKLGQTFR-DLLAEIEGLTEGSLTAKFLSSRNL 566
++ K L+ K+ G+ L I G TEG K L
Sbjct: 123 KDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKL 178
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 29.3 bits (66), Expect = 1.4
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 455 GHDKMMAVLRNRQRSLGLVYMAVNNKNMEAGIDTALSMNDG-----TVMIDLFKSMLGQG 509
G + M + R G V ++ +G++ ++S G + + +S+ G G
Sbjct: 71 GENTMPPEVEEELRKRGA--KIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHG 128
Query: 510 YKKCVKVYNALM 521
K CV++ +M
Sbjct: 129 LKVCVEI--TIM 138
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 465
Score = 28.4 bits (62), Expect = 4.1
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 6/55 (10%)
Query: 104 TSVDFHPYGDYLCSGSLDSFIKLWDLRRKGCIYTYRGHSKSINSIRFSPDGQWIA 158
S + P L S + C+ + + S FS +
Sbjct: 377 LSTEDLPRRRQLYS------ANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 26.2 bits (58), Expect = 4.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 1 MRAKVEKAEDFMAHGASVNCLALGK 25
+RA+V EDF+ GK
Sbjct: 39 IRAEVIAYEDFIQFNGENGAKEAGK 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,980,877
Number of extensions: 136547
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 171
Length of query: 845
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 752
Effective length of database: 1,130,706
Effective search space: 850290912
Effective search space used: 850290912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.7 bits)