Query psy4670
Match_columns 643
No_of_seqs 277 out of 1294
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2725|consensus 100.0 1.3E-84 2.9E-89 666.8 16.4 312 57-643 56-368 (411)
2 PTZ00127 cytochrome c oxidase 100.0 9.6E-74 2.1E-78 621.1 33.1 310 58-643 53-363 (403)
3 PF02628 COX15-CtaA: Cytochrom 100.0 8.6E-52 1.9E-56 434.3 26.7 269 71-643 1-270 (302)
4 COG1612 CtaA Uncharacterized p 100.0 5.9E-39 1.3E-43 338.6 26.5 280 82-519 33-314 (323)
5 KOG2725|consensus 100.0 6E-40 1.3E-44 337.8 11.5 238 304-586 63-303 (411)
6 COG1612 CtaA Uncharacterized p 100.0 4E-38 8.6E-43 332.3 22.4 245 318-643 29-275 (323)
7 PTZ00127 cytochrome c oxidase 100.0 2.8E-37 6.1E-42 336.0 24.8 181 305-520 60-241 (403)
8 PF02628 COX15-CtaA: Cytochrom 100.0 4.9E-30 1.1E-34 269.7 22.9 258 311-638 1-262 (302)
9 PF05297 Herpes_LMP1: Herpesvi 84.6 0.29 6.3E-06 51.6 0.0 91 215-337 14-104 (381)
10 COG3038 CybB Cytochrome B561 [ 79.9 70 0.0015 32.1 14.8 141 462-621 21-162 (181)
11 PF09990 DUF2231: Predicted me 75.1 14 0.0003 33.0 7.6 57 148-204 39-100 (104)
12 PF09990 DUF2231: Predicted me 74.0 42 0.0009 30.0 10.4 23 454-476 77-99 (104)
13 PF04238 DUF420: Protein of un 71.5 89 0.0019 29.8 12.3 68 177-245 30-99 (133)
14 PF00033 Cytochrom_B_N: Cytoch 58.4 1.7E+02 0.0037 27.8 12.5 28 492-519 42-69 (188)
15 PRK11513 cytochrome b561; Prov 52.7 2.4E+02 0.0052 27.8 13.5 109 495-615 40-150 (176)
16 COG3038 CybB Cytochrome B561 [ 49.3 1.5E+02 0.0032 29.9 9.9 46 186-240 18-63 (181)
17 PF00033 Cytochrom_B_N: Cytoch 48.2 2.5E+02 0.0054 26.7 11.5 94 147-240 45-166 (188)
18 PF01654 Bac_Ubq_Cox: Bacteria 44.1 55 0.0012 37.1 6.8 60 142-201 170-235 (436)
19 PF03188 Cytochrom_B561: Eukar 41.9 2.8E+02 0.0061 25.5 11.4 86 147-240 33-124 (137)
20 TIGR00351 narI respiratory nit 39.7 1.8E+02 0.0039 30.1 9.2 85 153-238 90-197 (224)
21 COG1271 CydA Cytochrome bd-typ 38.5 6.7E+02 0.015 28.9 18.3 107 173-283 118-242 (457)
22 PF10031 DUF2273: Small integr 35.6 1.4E+02 0.003 23.9 5.9 26 146-171 3-28 (51)
23 PF05231 MASE1: MASE1; InterP 33.7 5.6E+02 0.012 26.5 14.7 29 146-174 142-170 (299)
24 PF01292 Ni_hydr_CYTB: Prokary 32.9 4.4E+02 0.0095 25.1 13.3 127 462-621 15-166 (182)
25 cd00284 Cytochrome_b_N Cytochr 30.1 2E+02 0.0042 29.2 7.6 69 536-619 22-92 (200)
26 PF07226 DUF1422: Protein of u 28.8 2.2E+02 0.0047 26.8 6.8 68 161-246 41-112 (117)
27 PF02665 Nitrate_red_gam: Nitr 27.0 2.7E+02 0.0058 28.6 8.0 87 151-237 87-194 (222)
28 PF01773 Nucleos_tra2_N: Na+ d 26.5 1.7E+02 0.0036 25.1 5.4 43 159-205 1-43 (75)
29 PF04238 DUF420: Protein of un 24.4 6.2E+02 0.014 24.1 12.4 56 490-555 71-126 (133)
30 COG3256 NorB Nitric oxide redu 24.0 8.3E+02 0.018 29.3 11.8 74 486-561 200-278 (717)
31 PRK11056 hypothetical protein; 23.3 2.8E+02 0.006 26.1 6.5 68 161-246 41-112 (120)
32 PF13172 PepSY_TM_1: PepSY-ass 20.5 1.6E+02 0.0035 21.1 3.5 22 147-168 4-25 (34)
33 TIGR02484 CitB CitB domain pro 20.1 4.6E+02 0.01 29.3 8.6 20 220-239 319-338 (372)
No 1
>KOG2725|consensus
Probab=100.00 E-value=1.3e-84 Score=666.80 Aligned_cols=312 Identities=56% Similarity=0.956 Sum_probs=288.0
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCccc-cCCCChHHHHHHHHhhccCchhhccCC
Q psy4670 57 VAKPNILDKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGE-KLPRNSAEWIEEFNLYKEYPEFKLKNK 135 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~wl~~~~~lv~~~VvlGg~tRLT~SGLgcpdWp~c~G-~pP~~~~~w~~ef~~yk~~Pey~~~n~ 135 (643)
..++.+.++++|.+++|+++|++++|++|++||+||||||||||+||++..| .||.++|||++|||||||+|||+..|.
T Consensus 56 ~~~~~~~~k~~K~Vg~WLlG~sg~Vf~~VvLGGvTRLTeSGLSm~~Wk~~~~~~Pp~~qeeW~~EFekYkqsPEfK~lN~ 135 (411)
T KOG2725|consen 56 GSVSLVTKKASKVVGRWLLGCSGLVFGAVVLGGVTRLTESGLSMVDWKLITEMKPPTSQEEWEEEFEKYKQSPEFKLLNS 135 (411)
T ss_pred CccCCCCcchhhheeeeeeecchhheeeeeecceeeecccCcceeeeeeccCcCCCCchHHHHHHHHHHhcCcchhhhcc
Confidence 3445566899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCC
Q psy4670 136 DITLEEFKRIWWMEYLHRMWGRCIGAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSD 215 (643)
Q Consensus 136 ~~~l~~fK~i~~~E~~HR~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~ 215 (643)
+||+||||+||||||+||+|||.+|++|++|++|||++++..+.++.+++++..|+++||++|||||+|||+|.. +++|
T Consensus 136 ~Mtl~EFKfIf~mEy~HRmwGR~iG~vflLPa~Yf~~kg~~s~~~~krl~gL~~L~~lQG~iGWwMVKSGLee~~-~~~~ 214 (411)
T KOG2725|consen 136 HMTLDEFKFIFFMEYSHRMWGRAIGLVFLLPAAYFWRKGRFSPGMKKRLLGLTGLVGLQGLIGWWMVKSGLEEES-DSHD 214 (411)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhceeehhhhHHHHHhcccCcchhhHHHHHHHHHHhccceeEEEeecCCCCCC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 7789
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccccccchhhhhhcc
Q psy4670 216 VPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLTRWSSQVATTLSE 295 (643)
Q Consensus 216 ~~~vs~~~lt~Hl~~al~~~~~l~w~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~~~~~~~~~~~~e 295 (643)
+|||||||+++||+.||++|++++|+++.+..|..+..
T Consensus 215 ~PrVSqYRLAtHL~sAf~LY~g~lWtgls~L~~~~~~~------------------------------------------ 252 (411)
T KOG2725|consen 215 VPRVSQYRLATHLGSAFVLYCGSLWTGLSLLLPPAQLL------------------------------------------ 252 (411)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhhhhcCchhhh------------------------------------------
Confidence 99999999999999999999999999999763321000
Q ss_pred cccCCCCCCCccchhhhHHHHHHHHHHHHHhhhceeeecccCCCcccccccCCCCCCChHHHHHHHhhhccCchhhhhhh
Q psy4670 296 NVAKPNILEKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGEKLPRNSAEWIEEFNLYKEYPEFKLQNI 375 (643)
Q Consensus 296 ~va~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~cg~~~P~~~~~~~~ef~~yk~~Pe~~~~n~ 375 (643)
+
T Consensus 253 ------------------------------------------------------------------------~------- 253 (411)
T KOG2725|consen 253 ------------------------------------------------------------------------S------- 253 (411)
T ss_pred ------------------------------------------------------------------------H-------
Confidence 0
Q ss_pred cchhhhhhhcCcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHH
Q psy4670 376 GLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLI 455 (643)
Q Consensus 376 ~~~~w~~~~~~~~~~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~ 455 (643)
+
T Consensus 254 ---------------------------------------------~---------------------------------- 254 (411)
T KOG2725|consen 254 ---------------------------------------------E---------------------------------- 254 (411)
T ss_pred ---------------------------------------------H----------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHH
Q psy4670 456 FVTALSGENMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLR 535 (643)
Q Consensus 456 ~~~al~~lv~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~ 535 (643)
.+...+
T Consensus 255 --------------------------------------------------------------------------~~kl~~ 260 (411)
T KOG2725|consen 255 --------------------------------------------------------------------------VSKLLK 260 (411)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 001123
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHH
Q psy4670 536 FKRLAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTA 615 (643)
Q Consensus 536 lr~la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~ 615 (643)
+|+++....++++++.++||||||+|||++||+||+|++.|+||+.|.+.|+|||++|||++|||+||++|+.+++++..
T Consensus 261 ~r~~~~~~~~~v~lTaiSGafVAGlDAG~vYnsfPKMGe~wipd~~f~r~piwrN~~ENp~tVQ~~HRila~tt~~ai~~ 340 (411)
T KOG2725|consen 261 LRKLAHGTKGLVFLTAISGAFVAGLDAGLVYNSFPKMGESWIPDDMFTRSPIWRNFFENPTTVQFDHRILAITTVTAITA 340 (411)
T ss_pred HHHhhhhhHHHHHHHHHhhhhhhcccccceeccccccccccCccccccccHHHHHhhcCCceEEeehhhHHHHHHHHHHH
Confidence 67777788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcC
Q psy4670 616 QYWMGRKLKLPGRANLALTCVTGMAYMQ 643 (643)
Q Consensus 616 l~~~~~r~~~p~~~r~~~~~l~~ll~lQ 643 (643)
+++..||...|++++.+...+++++..|
T Consensus 341 ~~~~~rr~~lpkr~k~ai~~~v~~v~~Q 368 (411)
T KOG2725|consen 341 LYLITRRAPLPKRTKMAINVTVAVVTTQ 368 (411)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9998899999999999999999999887
No 2
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=100.00 E-value=9.6e-74 Score=621.11 Aligned_cols=310 Identities=45% Similarity=0.750 Sum_probs=272.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCccc-cCCCChHHHHHHHHhhccCchhhccCCC
Q psy4670 58 AKPNILDKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGE-KLPRNSAEWIEEFNLYKEYPEFKLKNKD 136 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~wl~~~~~lv~~~VvlGg~tRLT~SGLgcpdWp~c~G-~pP~~~~~w~~ef~~yk~~Pey~~~n~~ 136 (643)
..+-+.++.+|.+++|+++++++++++|++||+||+||||||||||| |+| +||.+|+||++||+|||++|||++.|++
T Consensus 53 ~~~~~~~~~~~~v~~wl~~~~~l~~~~V~~Gg~tRlT~SGLgcpdWp-~~G~~~P~~~~~w~~~f~~yk~~pey~~~~~~ 131 (403)
T PTZ00127 53 STQWVAPGGEKKVGHWLLGCAGLVGGMVVLGGYTRLTESGLSMTDWK-FIGVKPPITQEEWEKEFDKYKQFPEYKQVHYG 131 (403)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHcchhhcccccccCCCCCC-CCCEECCCCHHHHHHHHHHhccCchHhhhcCC
Confidence 44445667778999999999999999999999999999999999999 999 9999999999999999999999999999
Q ss_pred CChhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCC
Q psy4670 137 ITLEEFKRIWWMEYLHRMWGRCIGAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDV 216 (643)
Q Consensus 137 ~~l~~fK~i~~~E~~HR~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~ 216 (643)
||+|+||.|||+||+||++||++|+++++|+++++++++++++...+++++++++++||++|||||+|||+|. .++++.
T Consensus 132 ~~l~~fk~i~~~E~~HRllg~~lGl~~l~~l~~~~~~~~~~~~~~~~l~~ll~L~~~Qg~lG~~~V~sgL~~~-~~~~~~ 210 (403)
T PTZ00127 132 MTLEEFKKIFFWEWLHRMLGRSIGLFFGLPLLYFAAKGYLKPRMLKRLSAIGGLGGAQGFVGWWMVKSGLDEP-LTENKK 210 (403)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccCC
Confidence 9999999999999999999999999999999999998888787888888889999999999999999999873 456788
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccccccchhhhhhccc
Q psy4670 217 PRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLTRWSSQVATTLSEN 296 (643)
Q Consensus 217 ~~vs~~~lt~Hl~~al~~~~~l~w~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~~~~~~~~~~~~e~ 296 (643)
|+|||||||+||++|+++|++++|+++++..++.+.
T Consensus 211 p~Vs~~rla~Hll~al~i~~~l~~~~~~l~~~~~~~-------------------------------------------- 246 (403)
T PTZ00127 211 PRVSPYRLAAHLFNAFVIYSLLLWNGLTLILFALPS-------------------------------------------- 246 (403)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------------------------------------------
Confidence 999999999999999999999999888753110000
Q ss_pred ccCCCCCCCccchhhhHHHHHHHHHHHHHhhhceeeecccCCCcccccccCCCCCCChHHHHHHHhhhccCchhhhhhhc
Q psy4670 297 VAKPNILEKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGEKLPRNSAEWIEEFNLYKEYPEFKLQNIG 376 (643)
Q Consensus 297 va~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~cg~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~ 376 (643)
T Consensus 247 -------------------------------------------------------------------------------- 246 (403)
T PTZ00127 247 -------------------------------------------------------------------------------- 246 (403)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhcCcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHH
Q psy4670 377 LMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIF 456 (643)
Q Consensus 377 ~~~w~~~~~~~~~~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~ 456 (643)
.
T Consensus 247 -------------------------------------------------------------~------------------ 247 (403)
T PTZ00127 247 -------------------------------------------------------------I------------------ 247 (403)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHH
Q psy4670 457 VTALSGENMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRF 536 (643)
Q Consensus 457 ~~al~~lv~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~l 536 (643)
. ..+..+++
T Consensus 248 ----------------------------------------------------------------~-------~~~~~~~l 256 (403)
T PTZ00127 248 ----------------------------------------------------------------A-------PFPELLKM 256 (403)
T ss_pred ----------------------------------------------------------------c-------ccccchhH
Confidence 0 00011235
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHHH
Q psy4670 537 KRLAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTAQ 616 (643)
Q Consensus 537 r~la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~l 616 (643)
|+++.++++++++||++||+|||+|||++|||||+|+|+++|++++...+.|+|++||+..|||+||.+|++++++++++
T Consensus 257 r~l~~~~~~l~~lqI~lGa~Vag~~AGlac~~wP~c~g~~iP~~~~~~~~~~~~~~e~~~~vqf~HR~~A~l~~l~~l~l 336 (403)
T PTZ00127 257 RLLARGLFALVFLTAMSGAFVAGNDAGLAYNTWPKMGGKFVPDDVHNFVPWYKNFFENTAVVQFNHRVLAYLTFLSSLGL 336 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCchhhhhhhhHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 66777788899999999999999999999999999999999998766667899999999999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcC
Q psy4670 617 YWMGRKLKLPGRANLALTCVTGMAYMQ 643 (643)
Q Consensus 617 ~~~~~r~~~p~~~r~~~~~l~~ll~lQ 643 (643)
++..+|.+.++..++.+..+++++++|
T Consensus 337 ~~~~~r~~~~~~~~~~~~~ll~lv~lQ 363 (403)
T PTZ00127 337 YYKARKLNLPKSVRRLLMALLGALTLQ 363 (403)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 888888766677888888888888887
No 3
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=8.6e-52 Score=434.31 Aligned_cols=269 Identities=33% Similarity=0.488 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCccc-cCCCChHHHHHHHHhhccCchhhccCCCCChhhhhhHHHHH
Q psy4670 71 GYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGE-KLPRNSAEWIEEFNLYKEYPEFKLKNKDITLEEFKRIWWME 149 (643)
Q Consensus 71 ~~wl~~~~~lv~~~VvlGg~tRLT~SGLgcpdWp~c~G-~pP~~~~~w~~ef~~yk~~Pey~~~n~~~~l~~fK~i~~~E 149 (643)
++|+++++++++++|++||+||+|||||||||||+|+| +||.+|+||++||++||++| +||.++|+|
T Consensus 1 r~~~~~~~~~~~~li~~G~~vr~tgsGl~CpdWP~C~G~~~P~~~~~w~~~~~~y~~~~------------~~~~~~~~E 68 (302)
T PF02628_consen 1 RRLAWLTAVLTFLLIVLGGLVRLTGSGLGCPDWPLCFGQLPPLSESEWAAEFEKYKQTP------------FFKFHTWIE 68 (302)
T ss_pred CcHHHHHHHHHHHHHHHhHheeecccccCCCCCcCccCcCCCCCHHHHHHHHHhCcCCc------------cchhhhhHH
Confidence 47899999999999999999999999999999999999 99999999999999999999 456678999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCccchHHHHHHHH
Q psy4670 150 YLHRMWGRCIGAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVSQYRLASHLS 229 (643)
Q Consensus 150 ~~HR~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~ 229 (643)
|+||++|+++|+++++++++++++++.+++....+.++++++++||++|++||+++| ++|+++++|++
T Consensus 69 ~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l------------~~~~~~~~Hl~ 136 (302)
T PF02628_consen 69 WGHRLLAGLVGLLILALAVWAWRKRRIRRRLRWLALLALVLVILQGLLGAWTVLSGL------------VSPYVVTLHLL 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcc------------cchHHHHHHHH
Confidence 999999999999999999999998888899999999999999999999999999998 25799999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccccccchhhhhhcccccCCCCCCCccch
Q psy4670 230 MAFLLYSGLLWTALDHLLPSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLTRWSSQVATTLSENVAKPNILEKPTRI 309 (643)
Q Consensus 230 ~al~~~~~l~w~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~~~~~~~~~~~~e~va~~~~~~~~~~~ 309 (643)
.|+++|++++|++++..++++ .
T Consensus 137 ~a~~~~~~l~~~~~~~~~~~~-~--------------------------------------------------------- 158 (302)
T PF02628_consen 137 LALLIFALLVWLALRARRPEE-S--------------------------------------------------------- 158 (302)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c---------------------------------------------------------
Confidence 999999999998888531110 0
Q ss_pred hhhHHHHHHHHHHHHHhhhceeeecccCCCcccccccCCCCCCChHHHHHHHhhhccCchhhhhhhcchhhhhhhcCccc
Q psy4670 310 TGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGEKLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYMVQSGLED 389 (643)
Q Consensus 310 ~~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~cg~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~~~~~~~~ 389 (643)
+
T Consensus 159 ----------------------------------------------------------~--------------------- 159 (302)
T PF02628_consen 159 ----------------------------------------------------------P--------------------- 159 (302)
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHhhh
Q psy4670 390 RFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGENMLRGL 469 (643)
Q Consensus 390 ~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~lv~lQG~ 469 (643)
T Consensus 160 -------------------------------------------------------------------------------- 159 (302)
T PF02628_consen 160 -------------------------------------------------------------------------------- 159 (302)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4670 470 MGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFV 549 (643)
Q Consensus 470 LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~lr~la~~~~~lv~v 549 (643)
+ .....++.|+++..+.+++++
T Consensus 160 ---------------------------------------------------~-------~~~~~~~~~~l~~~~~~l~~~ 181 (302)
T PF02628_consen 160 ---------------------------------------------------R-------RLPRPRRLRWLAWAALVLVFI 181 (302)
T ss_pred ---------------------------------------------------c-------ccccchhHHHHHHHHHHHHHH
Confidence 0 001123567777888899999
Q ss_pred HHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Q psy4670 550 TALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTAQYWMGRKLKLPGRA 629 (643)
Q Consensus 550 qI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~l~~~~~r~~~p~~~ 629 (643)
|+++|++|+|++||.+|||||+|+.+ +|.. ++.|.+++||+..+|+.||.+|++++++++++++.++|.+.++..
T Consensus 182 qi~lGa~va~~~ag~a~~~~P~~~~~-~~~~----~~~~~~~~~~~~~v~~~Hr~~A~~~~~~~~~l~~~~~r~~~~~~~ 256 (302)
T PF02628_consen 182 QIALGALVAGNGAGLACNTWPLMGPD-WPLC----QPDWRNFFDNPGTVQFIHRLLALLVLLLLLALAVRAWRRRRSRAL 256 (302)
T ss_pred HHhccceeccchHHHhccCCcccCCc-chhc----cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 99999999999999999999999944 3432 445788999999999999999999999999999998888777889
Q ss_pred HHHHHHHHHHHhcC
Q psy4670 630 NLALTCVTGMAYMQ 643 (643)
Q Consensus 630 r~~~~~l~~ll~lQ 643 (643)
++.+..+++++++|
T Consensus 257 ~~~~~~~~~ll~~Q 270 (302)
T PF02628_consen 257 RRLAVLLLALLLLQ 270 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
No 4
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=338.56 Aligned_cols=280 Identities=27% Similarity=0.301 Sum_probs=211.6
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCccc--cCCCChHHHHHHHHhhccCchhhccCCCCChhhhhhHHHHHhHHHHHHHHH
Q psy4670 82 FGAVVLGGVTRLTESGLSMVTWKLFGE--KLPRNSAEWIEEFNLYKEYPEFKLKNKDITLEEFKRIWWMEYLHRMWGRCI 159 (643)
Q Consensus 82 ~~~VvlGg~tRLT~SGLgcpdWp~c~G--~pP~~~~~w~~ef~~yk~~Pey~~~n~~~~l~~fK~i~~~E~~HR~~g~~~ 159 (643)
.++|+.|+.||+|+||+||+|||.||| +|| +|+.|+||.++|+||+||++||++
T Consensus 33 ~l~i~~Ga~v~~t~sglgC~~WP~C~g~~~~~------------------------~~~~~~~~~~~~iE~~HRl~a~~~ 88 (323)
T COG1612 33 GLSIVEGAPVRGTGSGLGCPDWPLCFGQYKPP------------------------GMTLEVFKLIFWIEWFHRLLAGLI 88 (323)
T ss_pred hHHHccCcceeeecCCCCCCcchhhcceeecC------------------------ccCccccchHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999 554 688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCccchHHHHHHHHHHHHHHHHHH
Q psy4670 160 GAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVSQYRLASHLSMAFLLYSGLL 239 (643)
Q Consensus 160 Gl~~l~~~~~~~~~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~~al~~~~~l~ 239 (643)
|++++++++++|++++++++.++.+.++++++++||++|||||++||.+. +.++||+++.|+..++++++.++
T Consensus 89 gl~vi~l~~~aw~~~~~~r~~~~~~i~~l~l~~lQgliG~~tV~~gl~~~-------~~~~h~~la~~l~aa~~il~~~~ 161 (323)
T COG1612 89 GLLVLLLAILAWRRRRISRELKLAAILALALLILQGLIGGWTVTSGLLPR-------IVASHLRLAMHLFAALVILALLI 161 (323)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999764 34566666666666666666655
Q ss_pred HHHHhhhcccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccccccchhhhhhcccccCCCCCCCccchhhhHHHHHHH
Q psy4670 240 WTALDHLLPSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLTRWSSQVATTLSENVAKPNILEKPTRITGYWLLGCSG 319 (643)
Q Consensus 240 w~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~~~~~~~~~~~~e~va~~~~~~~~~~~~~~~~~~~~~ 319 (643)
|.+.+ . +.+.....+++|.+.....+
T Consensus 162 ~~~~~-~-----------------------------------------------------~~~~~~~~~~~r~~a~~~~~ 187 (323)
T COG1612 162 WTADG-P-----------------------------------------------------GSPRLADGKKLRGLAGIGLG 187 (323)
T ss_pred hcccc-c-----------------------------------------------------CccchhccchhHHHHHHHHH
Confidence 54433 0 01122345677777777788
Q ss_pred HHHHHHhhhceeeecccCCCcccccccCCCCCCChHHHHHHHhhhccCchhhhhhhcchhhhhhhcCcccccccCCCCcc
Q psy4670 320 MVFGAVVLGGVTRLTESGLSMVTWKLFGEKLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYMVQSGLEDRFHTQSDVPR 399 (643)
Q Consensus 320 ~~~~~v~~Ga~~r~t~sGl~c~~WP~cg~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~~~~~~~~~f~~~~~~~E 399 (643)
++|..+++||+|++.|+|++|++||+|++..|.+.. +.|| +..
T Consensus 188 ~~~~~i~~GalV~~~~a~~a~~~~P~~~~~~~~~~~----------~~~~---------------------------~vq 230 (323)
T COG1612 188 LLYLQIYLGALVAGLDAGLAYNTWPLMDGRWITNLG----------ESPE---------------------------TVQ 230 (323)
T ss_pred HHHHHHHhhhhhhccccccccCCCCCCccccccccc----------ccch---------------------------hhh
Confidence 888888888899999999999999999654443221 1222 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhccCC
Q psy4670 400 VSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGENMLRGLMGWYMVQSGL 479 (643)
Q Consensus 400 ~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~lv~lQG~LG~~~V~sgL 479 (643)
+.||..+..+-...+...+..+. +...+ +. ..+ ....+++++..|+.+|-.+|.++.
T Consensus 231 ~~Hr~~a~~~~~~~l~~~~~~~r--~~~~~--------~~----------~~~---~~~~l~~lv~~Q~~~Gi~tv~~~v 287 (323)
T COG1612 231 FVHRLGAYLVFVAALLLLVAALR--RAPLT--------RA----------ART---RAVVLLALVTLQAALGILTVLLGV 287 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--ccccc--------hh----------HHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999998776655554333322 11011 10 000 234567888999999999999983
Q ss_pred ccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy4670 480 EDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHL 519 (643)
Q Consensus 480 ~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~ 519 (643)
+-....+|-..++++++.+.+.+....
T Consensus 288 -------------pl~~a~~H~~~~~~ll~~~~~~a~~~~ 314 (323)
T COG1612 288 -------------PLALALAHQAAALVLLATALLHAWLLA 314 (323)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445778888888888888888766554
No 5
>KOG2725|consensus
Probab=100.00 E-value=6e-40 Score=337.77 Aligned_cols=238 Identities=44% Similarity=0.678 Sum_probs=184.1
Q ss_pred CCccchhhhHHHHHHHHHHHHHhhhceeeecccCCCcccccccCC-CCCCChHHHHHHHhhhccCchhhhhhhcchhhhh
Q psy4670 304 EKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLFGE-KLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYM 382 (643)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~cg~-~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~ 382 (643)
++..|.+.+|+++|+.++|++|++||.||+|+|||+++||.+.+. .+|.+++||++||||||++||||..|.+|.
T Consensus 63 ~k~~K~Vg~WLlG~sg~Vf~~VvLGGvTRLTeSGLSm~~Wk~~~~~~Pp~~qeeW~~EFekYkqsPEfK~lN~~Mt---- 138 (411)
T KOG2725|consen 63 KKASKVVGRWLLGCSGLVFGAVVLGGVTRLTESGLSMVDWKLITEMKPPTSQEEWEEEFEKYKQSPEFKLLNSHMT---- 138 (411)
T ss_pred cchhhheeeeeeecchhheeeeeecceeeecccCcceeeeeeccCcCCCCchHHHHHHHHHHhcCcchhhhccCCc----
Confidence 567799999999999999999999999999999999999999955 556679999999999999999999998773
Q ss_pred hhcCcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHH
Q psy4670 383 VQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSG 462 (643)
Q Consensus 383 ~~~~~~~~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~ 462 (643)
.++|+-+| +-||+||++++.+|+++++.+...|. ++ |.. +.+... ...+.+
T Consensus 139 -l~EFKfIf-----~mEy~HRmwGR~iG~vflLPa~Yf~~--kg-----------~~s-------~~~~kr---l~gL~~ 189 (411)
T KOG2725|consen 139 -LDEFKFIF-----FMEYSHRMWGRAIGLVFLLPAAYFWR--KG-----------RFS-------PGMKKR---LLGLTG 189 (411)
T ss_pred -HHHHHHHH-----HHHHHHHHHhhhhceeehhhhHHHHH--hc-----------ccC-------cchhhH---HHHHHH
Confidence 22223233 35899999999999998876665553 31 111 122222 346778
Q ss_pred HHHHhhhhhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHHHHHH--
Q psy4670 463 ENMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLA-- 540 (643)
Q Consensus 463 lv~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~lr~la-- 540 (643)
++++||++|||||+|||+|.. +++++|||||||+|+||+.||++||.++|+++.+..|+. ......+++.
T Consensus 190 L~~lQG~iGWwMVKSGLee~~-~~~~~PrVSqYRLAtHL~sAf~LY~g~lWtgls~L~~~~-------~~~~~~~kl~~~ 261 (411)
T KOG2725|consen 190 LVGLQGLIGWWMVKSGLEEES-DSHDVPRVSQYRLATHLGSAFVLYCGSLWTGLSLLLPPA-------QLLSEVSKLLKL 261 (411)
T ss_pred HHHhccceeEEEeecCCCCCC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhcCch-------hhhHHHHHHHHH
Confidence 889999999999999999976 788999999999999999999999999999999987652 1233344433
Q ss_pred HHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCc
Q psy4670 541 YMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEP 586 (643)
Q Consensus 541 ~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~ 586 (643)
.-....+..-+++-|...+..||+.. -+-..-+|.+.+...|
T Consensus 262 r~~~~~~~~~v~lTaiSGafVAGlDA----G~vYnsfPKMGe~wip 303 (411)
T KOG2725|consen 262 RKLAHGTKGLVFLTAISGAFVAGLDA----GLVYNSFPKMGESWIP 303 (411)
T ss_pred HHhhhhhHHHHHHHHHhhhhhhcccc----cceeccccccccccCc
Confidence 22344555566778888899999774 2223345888765444
No 6
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=332.29 Aligned_cols=245 Identities=30% Similarity=0.346 Sum_probs=187.8
Q ss_pred HHHHHHHHhhhceeeecccCCCccccccc-CCCCCCChHHHHHHHhhhccCchhhhhhhcchhhhhhhcCcccccccCCC
Q psy4670 318 SGMVFGAVVLGGVTRLTESGLSMVTWKLF-GEKLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYMVQSGLEDRFHTQSD 396 (643)
Q Consensus 318 ~~~~~~~v~~Ga~~r~t~sGl~c~~WP~c-g~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~~~~~~~~~f~~~~~ 396 (643)
..-++++++.|+.||.|+||+||+|||+| |+..|.. ...++++. +.
T Consensus 29 l~~~~l~i~~Ga~v~~t~sglgC~~WP~C~g~~~~~~-----------~~~~~~~~----------------------~~ 75 (323)
T COG1612 29 LTTSGLSIVEGAPVRGTGSGLGCPDWPLCFGQYKPPG-----------MTLEVFKL----------------------IF 75 (323)
T ss_pred HHHhhHHHccCcceeeecCCCCCCcchhhcceeecCc-----------cCccccch----------------------HH
Confidence 33347999999999999999999999999 7766531 01122111 24
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhc
Q psy4670 397 VPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGENMLRGLMGWYMVQ 476 (643)
Q Consensus 397 ~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~lv~lQG~LG~~~V~ 476 (643)
|.||+||++++.+|++++.+++++|+..|..++ ..+ ...+.++++++||++|||||+
T Consensus 76 ~iE~~HRl~a~~~gl~vi~l~~~aw~~~~~~r~--------------------~~~---~~i~~l~l~~lQgliG~~tV~ 132 (323)
T COG1612 76 WIEWFHRLLAGLIGLLVLLLAILAWRRRRISRE--------------------LKL---AAILALALLILQGLIGGWTVT 132 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc--------------------chH---HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999864221111 111 234567788999999999999
Q ss_pred cCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q psy4670 477 SGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGAF 556 (643)
Q Consensus 477 sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~lr~la~~~~~lv~vqI~lGa~ 556 (643)
+||.+. +.++|++++.|+..++++++.++|.+.. . ..++....+++|.++....+++++|+++|++
T Consensus 133 ~gl~~~-------~~~~h~~la~~l~aa~~il~~~~~~~~~-~------~~~~~~~~~~~r~~a~~~~~~~~~~i~~Gal 198 (323)
T COG1612 133 SGLLPR-------IVASHLRLAMHLFAALVILALLIWTADG-P------GSPRLADGKKLRGLAGIGLGLLYLQIYLGAL 198 (323)
T ss_pred hCCCcc-------hhHHHHHHHHHHHHHHHHHHHHHhcccc-c------CccchhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 999874 4566666666666666666666665544 0 0112234678999999999999999999999
Q ss_pred HhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhhHHHHHH
Q psy4670 557 VAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTAQYWMGRK-LKLPGRANLALTC 635 (643)
Q Consensus 557 Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~l~~~~~r-~~~p~~~r~~~~~ 635 (643)
|+++||+++||+||+||+ ++| .|..|++..||+.||..|+.++++.+++....+| .+.++..++....
T Consensus 199 V~~~~a~~a~~~~P~~~~-~~~----------~~~~~~~~~vq~~Hr~~a~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~ 267 (323)
T COG1612 199 VAGLDAGLAYNTWPLMDG-RWI----------TNLGESPETVQFVHRLGAYLVFVAALLLLVAALRRAPLTRAARTRAVV 267 (323)
T ss_pred hhccccccccCCCCCCcc-ccc----------ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 999999999999999995 444 4677899999999999999999999988555555 5678888988888
Q ss_pred HHHHHhcC
Q psy4670 636 VTGMAYMQ 643 (643)
Q Consensus 636 l~~ll~lQ 643 (643)
+++++.+|
T Consensus 268 l~~lv~~Q 275 (323)
T COG1612 268 LLALVTLQ 275 (323)
T ss_pred HHHHHHHH
Confidence 88888877
No 7
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=336.02 Aligned_cols=181 Identities=44% Similarity=0.734 Sum_probs=146.5
Q ss_pred CccchhhhHHHHHHHHHHHHHhhhceeeecccCCCccccccc-CCCCCCChHHHHHHHhhhccCchhhhhhhcchhhhhh
Q psy4670 305 KPTRITGYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLF-GEKLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYMV 383 (643)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~c-g~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~~ 383 (643)
+.+|.+++|+++++++++++|++||+||+||||||||||| | |..+|.+++||++||||||++|||+..|.+|.
T Consensus 60 ~~~~~v~~wl~~~~~l~~~~V~~Gg~tRlT~SGLgcpdWp-~~G~~~P~~~~~w~~~f~~yk~~pey~~~~~~~~----- 133 (403)
T PTZ00127 60 GGEKKVGHWLLGCAGLVGGMVVLGGYTRLTESGLSMTDWK-FIGVKPPITQEEWEKEFDKYKQFPEYKQVHYGMT----- 133 (403)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcchhhcccccccCCCCCC-CCCEECCCCHHHHHHHHHHhccCchHhhhcCCCC-----
Confidence 4557899999999999999999999999999999999999 9 77889999999999999999999999886552
Q ss_pred hcCcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHH
Q psy4670 384 QSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGE 463 (643)
Q Consensus 384 ~~~~~~~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~l 463 (643)
+| .|+.+. |.||+||++++++|+++++...+. .+|++.+. + ......+++++
T Consensus 134 ---l~-~fk~i~-~~E~~HRllg~~lGl~~l~~l~~~--~~~~~~~~-------~--------------~~~~l~~ll~L 185 (403)
T PTZ00127 134 ---LE-EFKKIF-FWEWLHRMLGRSIGLFFGLPLLYF--AAKGYLKP-------R--------------MLKRLSAIGGL 185 (403)
T ss_pred ---HH-HhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCc-------c--------------cHHHHHHHHHH
Confidence 11 122221 689999999999999988633222 22221110 0 01123456677
Q ss_pred HHHhhhhhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhC
Q psy4670 464 NMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLL 520 (643)
Q Consensus 464 v~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~ 520 (643)
+++||++|||||+|||+| .+++..+|+|||||||+||++|+++|++++|+++.+..
T Consensus 186 ~~~Qg~lG~~~V~sgL~~-~~~~~~~p~Vs~~rla~Hll~al~i~~~l~~~~~~l~~ 241 (403)
T PTZ00127 186 GGAQGFVGWWMVKSGLDE-PLTENKKPRVSPYRLAAHLFNAFVIYSLLLWNGLTLIL 241 (403)
T ss_pred HHHHHHHHHHHHHhcccc-cccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999988 56678899999999999999999999999999988763
No 8
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.97 E-value=4.9e-30 Score=269.66 Aligned_cols=258 Identities=23% Similarity=0.251 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHHHHHhhhceeeecccCCCccccccc-CCCCCCChHHHHHHHhhhccCchhhhhhhcchhhhhhhcCccc
Q psy4670 311 GYWLLGCSGMVFGAVVLGGVTRLTESGLSMVTWKLF-GEKLPRNSAEWIEEFNLYKEYPEFKLQNIGLMGWYMVQSGLED 389 (643)
Q Consensus 311 ~~~~~~~~~~~~~~v~~Ga~~r~t~sGl~c~~WP~c-g~~~P~~~~~~~~ef~~yk~~Pe~~~~n~~~~~w~~~~~~~~~ 389 (643)
|++.+++++++|++|++||+||.|||||||||||+| |+.+|.+++||.+|||+||++||++.
T Consensus 1 r~~~~~~~~~~~~li~~G~~vr~tgsGl~CpdWP~C~G~~~P~~~~~w~~~~~~y~~~~~~~~----------------- 63 (302)
T PF02628_consen 1 RRLAWLTAVLTFLLIVLGGLVRLTGSGLGCPDWPLCFGQLPPLSESEWAAEFEKYKQTPFFKF----------------- 63 (302)
T ss_pred CcHHHHHHHHHHHHHHHhHheeecccccCCCCCcCccCcCCCCCHHHHHHHHHhCcCCccchh-----------------
Confidence 578899999999999999999999999999999999 88888899999999999999997543
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHhhh
Q psy4670 390 RFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGENMLRGL 469 (643)
Q Consensus 390 ~f~~~~~~~E~~HR~la~~lGll~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~l~~~~al~~lv~lQG~ 469 (643)
+.|.||+||++++.+|+++++.++++|...|.+++ + .....+.++++++||+
T Consensus 64 -----~~~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~--------------------~---~~~~~~~~~l~~~Q~~ 115 (302)
T PF02628_consen 64 -----HTWIEWGHRLLAGLVGLLILALAVWAWRKRRIRRR--------------------L---RWLALLALVLVILQGL 115 (302)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc--------------------h---HHHHHHHHHHHHHHHH
Confidence 35689999999999999999998888753221110 0 1134567788999999
Q ss_pred hhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4670 470 MGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFV 549 (643)
Q Consensus 470 LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~lr~la~~~~~lv~v 549 (643)
+|++||+++| ++|+++++|++.|++++++++|+++...+++ +..+.....+++...+.+...
T Consensus 116 lG~~~V~~~l------------~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~- 177 (302)
T PF02628_consen 116 LGAWTVLSGL------------VSPYVVTLHLLLALLIFALLVWLALRARRPE-----ESPRRLPRPRRLRWLAWAALV- 177 (302)
T ss_pred HHHHHHHhcc------------cchHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----ccccccccchhHHHHHHHHHH-
Confidence 9999999986 3678999999999999999999999987432 122333444555555444333
Q ss_pred HHHHhHHHhhhccccccCCCcCCCC--CCCCccccccCccccccc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy4670 550 TALSGAFVAGLDAGLVYNSFPLMAD--RLIPTDILALEPPLRNFT-ENPTTVQFDHRVLGISVFSLLTAQYWMGRKLKLP 626 (643)
Q Consensus 550 qI~lGa~Vag~~AGlac~tfP~m~g--~~iP~~~~~~~~~w~n~~-en~~~Vqf~HR~lA~l~~~~~l~l~~~~~r~~~p 626 (643)
-++.=....+..+| +..+. .-+|.++-+ .+..+... +........|..=-+...+..+.+.+...+....
T Consensus 178 l~~~qi~lGa~va~------~~ag~a~~~~P~~~~~-~~~~~~~~~~~~~~~~~v~~~Hr~~A~~~~~~~~~l~~~~~r~ 250 (302)
T PF02628_consen 178 LVFIQIALGALVAG------NGAGLACNTWPLMGPD-WPLCQPDWRNFFDNPGTVQFIHRLLALLVLLLLLALAVRAWRR 250 (302)
T ss_pred HHHHHHhccceecc------chHHHhccCCcccCCc-chhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222223333333 22221 234655411 22221112 2223455566666666667666666666666544
Q ss_pred hhhHHHHHHHHH
Q psy4670 627 GRANLALTCVTG 638 (643)
Q Consensus 627 ~~~r~~~~~l~~ 638 (643)
++.+........
T Consensus 251 ~~~~~~~~~~~~ 262 (302)
T PF02628_consen 251 RRSRALRRLAVL 262 (302)
T ss_pred cCcHHHHHHHHH
Confidence 444444444333
No 9
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=84.65 E-value=0.29 Score=51.60 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccccccchhhhhhc
Q psy4670 215 DVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLTRWSSQVATTLS 294 (643)
Q Consensus 215 ~~~~vs~~~lt~Hl~~al~~~~~l~w~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~~~~~~~~~~~~ 294 (643)
+.||-.|---.+-|+.-++++++++|...-.. +- ++.+...+..+|.+.++++++-++.
T Consensus 14 r~pr~p~~~a~l~~~~llll~ail~w~~iims--d~-----t~~a~~vl~sfAvvliiIIiIImlF-------------- 72 (381)
T PF05297_consen 14 RPPRCPQPHASLLFGLLLLLVAILVWFFIIMS--DL-----TQGALTVLYSFAVVLIIIIIIIMLF-------------- 72 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh--cc-----ccchHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 45677775444444445566777888765431 11 1122334555666555555554444
Q ss_pred ccccCCCCCCCccchhhhHHHHHHHHHHHHHhhhceeeecccC
Q psy4670 295 ENVAKPNILEKPTRITGYWLLGCSGMVFGAVVLGGVTRLTESG 337 (643)
Q Consensus 295 e~va~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ga~~r~t~sG 337 (643)
.++.+.-.-+.|.++.++++++-+..++|+--
T Consensus 73 -----------~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~ 104 (381)
T PF05297_consen 73 -----------KRRLLCPLGLLCIILIMIVLLVSMLWTLTGQT 104 (381)
T ss_dssp -------------------------------------------
T ss_pred -----------HHhhcCcchHHHHHHHHHHHHHHHHHHhhccH
Confidence 24566667788888888888888887777754
No 10
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=79.91 E-value=70 Score=32.11 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=73.4
Q ss_pred HHHHHhhhhhhhhhccCCccccccCCCCCccchHHHHHHhHHHHHHHHHHHHHHH-HhhCccchhhhhhhhhhHHHHHHH
Q psy4670 462 GENMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQYRLASHLSMAFLLYSGLLWTAL-DHLLPSSKQLADNRAGLLRFKRLA 540 (643)
Q Consensus 462 ~lv~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~~va~HLl~A~li~~lllwlal-~l~~~~~~~~~~~~~~~~~lr~la 540 (643)
.++..|-++|-+|+...-.| +.-......|...|++++.++++=-+ ++..+.++......+-..+.-+++
T Consensus 21 llv~~~~~~g~~~~~~~~~~---------~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA~~~ 91 (181)
T COG3038 21 LLVIGAFALGELMGFLPRGP---------GLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAKLG 91 (181)
T ss_pred HHHHHHHHHHHHHHHcccCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHH
Confidence 45678999999999875433 11235779999999999998876443 333332211111111122223344
Q ss_pred HHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4670 541 YMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTAQYWMG 620 (643)
Q Consensus 541 ~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~l~~~~ 620 (643)
..++-++++.+-+=++......|. .|+..+-..+|..... | .+-.......|-.+|++..++++.-...+
T Consensus 92 Hl~LY~l~lalPlsG~l~~~~~g~---~~~~FG~~~~p~~~~~------~-~~~~~~~~~~H~~la~~~~~lv~lHa~AA 161 (181)
T COG3038 92 HLALYLLMLALPLSGYLLSTASGR---PISVFGLFTVPATLLP------N-PALADLAKAIHETLAWLLYALIGLHAAAA 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---CceecchhhccCccCC------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333443334444444552 3333332122322111 1 01122455789999999888877655444
Q ss_pred H
Q psy4670 621 R 621 (643)
Q Consensus 621 ~ 621 (643)
.
T Consensus 162 l 162 (181)
T COG3038 162 L 162 (181)
T ss_pred H
Confidence 3
No 11
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=75.12 E-value=14 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH-HHHhcccCchhhH----HHHHHHHHHHHHHHHHHHHHHh
Q psy4670 148 MEYLHRMWGRCIGAAFFIPASI-FWYKGYFNSAMKK----RVGVFGLLIACQGLMGWYMVQS 204 (643)
Q Consensus 148 ~E~~HR~~g~~~Gl~~l~~~~~-~~~~~~~~~~~~~----~l~~~~~lv~~Qg~lG~~mV~s 204 (643)
.=+.|+.++-.+-.++++..+| +..|.+.++.... ..+..+.++..||.+|.-||..
T Consensus 39 ~~~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy~ 100 (104)
T PF09990_consen 39 VAWLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVYR 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457999999988888887777 3333433331111 2233456888899999999963
No 12
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=74.03 E-value=42 Score=29.96 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc
Q psy4670 454 LIFVTALSGENMLRGLMGWYMVQ 476 (643)
Q Consensus 454 l~~~~al~~lv~lQG~LG~~~V~ 476 (643)
+....+.++++..||.+|+-+|.
T Consensus 77 l~ls~~~~~ll~~~g~lGG~LVy 99 (104)
T PF09990_consen 77 LALSLLGVVLLLVTGWLGGELVY 99 (104)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33455566788899999999984
No 13
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=71.46 E-value=89 Score=29.77 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=43.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhCCcccc--cccCCCCccchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4670 177 NSAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRF--HIQSDVPRVSQYRLASHLSMAFLLYSGLLWTALDH 245 (643)
Q Consensus 177 ~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~--~~~~~~~~vs~~~lt~Hl~~al~~~~~l~w~~l~~ 245 (643)
+.+...+ ..+.+++..=.++..+.....+.+.. ..++.++-+--..+..|...|.+..-+.+.+-...
T Consensus 30 ~~~~Hr~-~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a 99 (133)
T PF04238_consen 30 RIKLHRK-LMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRA 99 (133)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 44555666667788888877775432 11223334666789999999998888876665554
No 14
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=58.38 E-value=1.7e+02 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=21.3
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy4670 492 VSQYRLASHLSMAFLLYSGLLWTALDHL 519 (643)
Q Consensus 492 vSp~~va~HLl~A~li~~lllwlal~l~ 519 (643)
........|...|++...+.+.-.+...
T Consensus 42 ~~~~~~~~H~~~G~~~~~~~~~~~~~~~ 69 (188)
T PF00033_consen 42 GRQLLRWLHFSLGIVFLALFLLRILWRL 69 (188)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998887766655443
No 15
>PRK11513 cytochrome b561; Provisional
Probab=52.67 E-value=2.4e+02 Score=27.78 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHHHHHHHH-HHHHhhCccchhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHhHHHhhhccccccCCCcCC
Q psy4670 495 YRLASHLSMAFLLYSGLLW-TALDHLLPSSKQLADNRAGLLRFKRLAYM-SKGLIFVTALSGAFVAGLDAGLVYNSFPLM 572 (643)
Q Consensus 495 ~~va~HLl~A~li~~lllw-lal~l~~~~~~~~~~~~~~~~~lr~la~~-~~~lv~vqI~lGa~Vag~~AGlac~tfP~m 572 (643)
.....|...|++++.++++ +..++..+.++...+..+..+...+.... .-++++++.++|-..+.. .|..-+-|
T Consensus 40 ~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~~~~-~G~~~~~f--- 115 (176)
T PRK11513 40 LINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYN-RGNPWFAF--- 115 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCceec---
Confidence 4568899999999987654 33444432211111001111222233322 234555566677665532 23111111
Q ss_pred CCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHH
Q psy4670 573 ADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTA 615 (643)
Q Consensus 573 ~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~ 615 (643)
+ --+|.... .++ +-.......|..+|+++.++++.
T Consensus 116 g-~~lp~~~~-~~~------~~~~~~~~~H~~~a~~l~~li~l 150 (176)
T PRK11513 116 G-LTMPYASE-ANF------ERVDSLKSWHETLANLGYFVIGL 150 (176)
T ss_pred c-ccCcccCC-CCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222100 000 01124567999999887665553
No 16
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=49.35 E-value=1.5e+02 Score=29.88 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy4670 186 VFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVSQYRLASHLSMAFLLYSGLLW 240 (643)
Q Consensus 186 ~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~~al~~~~~l~w 240 (643)
..+++++.|-.+|.+|+.-.-.+. ..-.....|...|++++.++++
T Consensus 18 l~allv~~~~~~g~~~~~~~~~~~---------~~~~~~~~Hks~Gi~vl~L~v~ 63 (181)
T COG3038 18 LMALLVIGAFALGELMGFLPRGPG---------LYFLLYELHKSIGILVLALMVL 63 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcccCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999998775432 1234578999999999888654
No 17
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=48.16 E-value=2.5e+02 Score=26.69 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh------------------c----------ccCchhhHHHHHHHHHHHHHHHHH
Q psy4670 147 WMEYLHRMWGRCIGAAFFIPASIFWYK------------------G----------YFNSAMKKRVGVFGLLIACQGLMG 198 (643)
Q Consensus 147 ~~E~~HR~~g~~~Gl~~l~~~~~~~~~------------------~----------~~~~~~~~~l~~~~~lv~~Qg~lG 198 (643)
..-..|+..|-+..+.+++-.++...+ . +.+...+..-..+.+++.++++-|
T Consensus 45 ~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG 124 (188)
T PF00033_consen 45 LLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITG 124 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999887776666654444 0 111122222244556688899999
Q ss_pred HHHHHhCCcccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy4670 199 WYMVQSGLEDRFHIQSDVPRVSQYRLASHLSMAFLLYSGLLW 240 (643)
Q Consensus 199 ~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~~al~~~~~l~w 240 (643)
..++.....+........+....+.-..|-..+.++...+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 125 LIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999322222211111222455677888999888888766544
No 18
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=44.11 E-value=55 Score=37.10 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc------cCchhhHHHHHHHHHHHHHHHHHHHH
Q psy4670 142 FKRIWWMEYLHRMWGRCIGAAFFIPASIFWYKGY------FNSAMKKRVGVFGLLIACQGLMGWYM 201 (643)
Q Consensus 142 fK~i~~~E~~HR~~g~~~Gl~~l~~~~~~~~~~~------~~~~~~~~l~~~~~lv~~Qg~lG~~m 201 (643)
|+..+|.++.||+.|..+--.+++..+..+...| .++..+..+...++....|.+.|-++
T Consensus 170 ~NP~~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~~ 235 (436)
T PF01654_consen 170 FNPSFWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGRDREYFRKSLKIGLVIGLIAAILQPFSGDWQ 235 (436)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhhHH
No 19
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=41.91 E-value=2.8e+02 Score=25.45 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=50.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccc-----CchhhHHH-HHHHHHHHHHHHHHHHHHHhCCcccccccCCCCccc
Q psy4670 147 WMEYLHRMWGRCIGAAFFIPASIFWYKGYF-----NSAMKKRV-GVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVS 220 (643)
Q Consensus 147 ~~E~~HR~~g~~~Gl~~l~~~~~~~~~~~~-----~~~~~~~l-~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs 220 (643)
++.+.|+.+--+..+..++.++.....+.. -......+ +..+++..+|.++|.......-.+ .+..
T Consensus 33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~--------~~~r 104 (137)
T PF03188_consen 33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLP--------RKRR 104 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCc--------ccHH
Confidence 788999988765544444444443332221 12333332 446678888999999887642111 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy4670 221 QYRLASHLSMAFLLYSGLLW 240 (643)
Q Consensus 221 ~~~lt~Hl~~al~~~~~l~w 240 (643)
|...-.|-..|.+++.+...
T Consensus 105 ~~~~~~H~~~G~~~~~l~~~ 124 (137)
T PF03188_consen 105 PIWNKWHRWLGYLIYVLAIA 124 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455599988888777544
No 20
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=39.70 E-value=1.8e+02 Score=30.05 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchh----hHHHHHHHHHHHHHHHHHHHHHHhCCc--ccccc-------------c
Q psy4670 153 RMWGRCIGAAFFIPASIFWYKGYFNSAM----KKRVGVFGLLIACQGLMGWYMVQSGLE--DRFHI-------------Q 213 (643)
Q Consensus 153 R~~g~~~Gl~~l~~~~~~~~~~~~~~~~----~~~l~~~~~lv~~Qg~lG~~mV~sgL~--~~~~~-------------~ 213 (643)
...|...|++.++.++.+..||-..++. ...=...+.+...|++.|.+|-..... +..+. +
T Consensus 90 ~~~G~~aGi~~liGl~~Ll~RRl~~~~vr~~s~~~D~~~L~lLl~i~~tGl~~~~~~~~~~~~~~~~~~~~w~~sl~~f~ 169 (224)
T TIGR00351 90 MFAGGASGVLCLIGGVLLLKRRLFSPRVRATSTGADILILSLLLIQCLLGLLTIPFSAQHMDGSEMMKLVGWAQSIVTFR 169 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcC
Confidence 4678888999988888876666333322 112245677778889999887422110 00000 0
Q ss_pred C---CCC-ccchHHHHHHHHHHHHHHHHH
Q psy4670 214 S---DVP-RVSQYRLASHLSMAFLLYSGL 238 (643)
Q Consensus 214 ~---~~~-~vs~~~lt~Hl~~al~~~~~l 238 (643)
. +.+ .+ |.....|+..++++++..
T Consensus 170 p~~~~~~~~v-~~~~~~H~~l~~~ll~~~ 197 (224)
T TIGR00351 170 GGASQHLDGV-AFIFRLHLVLGMTLFLLF 197 (224)
T ss_pred CCchhhHhhh-hHHHHHHHHHHHHHHHHH
Confidence 0 011 23 678899999999887763
No 21
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=38.46 E-value=6.7e+02 Score=28.87 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=55.2
Q ss_pred hcccCchhhHHHHHHHHHHHHHHHHHHHHHHhCCc-ccccc-c-----CCCCccchH---------HHHHHHHHHHHHHH
Q psy4670 173 KGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSGLE-DRFHI-Q-----SDVPRVSQY---------RLASHLSMAFLLYS 236 (643)
Q Consensus 173 ~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~-~~~~~-~-----~~~~~vs~~---------~lt~Hl~~al~~~~ 236 (643)
+.|+++..+..+....+++..=..+.=.++-|=.+ |.-.+ + .+.--+||+ .--.|...|-.+-+
T Consensus 118 wdrv~~~~H~~~t~~VAiGt~~Sa~wIl~aNsWMqtP~G~e~~~~~~~g~~~~~~~~a~i~NPs~~~~~~H~v~a~~~tg 197 (457)
T COG1271 118 WDRVSKKLHLLSTWLVAIGTNLSAFWILAANSWMQTPVGFEINTETGRGEVILVSPLAAVFNPSFPYRFVHTVLAAYLTG 197 (457)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCeeEEeecccCceeecCCHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45667777777666665555544444344433332 32210 1 121123332 23356666555555
Q ss_pred HHHHHHHhhhc--ccchhhhhhhhhhhHHHHHhhhhhHHHHHHHHhccc
Q psy4670 237 GLLWTALDHLL--PSSKQLADNRAGLVRFKRLAYMSKGLIFVTALSGLT 283 (643)
Q Consensus 237 ~l~w~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~lG~~ 283 (643)
..+-.+....+ +.+ +.+-..+.++-...++++.+..|+++|..
T Consensus 198 af~v~gisAy~llk~r----~~~~~k~~l~ia~~~~~~~~~~~~~~Gd~ 242 (457)
T COG1271 198 AFVVAGISAYYLLKGR----DKEFAKKSLKIALVFGLIFAILQIVLGDL 242 (457)
T ss_pred HHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 54444333221 111 11122355666788999999999999994
No 22
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.65 E-value=1.4e+02 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy4670 146 WWMEYLHRMWGRCIGAAFFIPASIFW 171 (643)
Q Consensus 146 ~~~E~~HR~~g~~~Gl~~l~~~~~~~ 171 (643)
+|.+|-.|+.|.++|+++.+..+.+-
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~G 28 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFG 28 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999877666543
No 23
>PF05231 MASE1: MASE1; InterPro: IPR007895 This is a domain of unknown function found in proteins of unknown function.
Probab=33.73 E-value=5.6e+02 Score=26.53 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4670 146 WWMEYLHRMWGRCIGAAFFIPASIFWYKG 174 (643)
Q Consensus 146 ~~~E~~HR~~g~~~Gl~~l~~~~~~~~~~ 174 (643)
++..|.+-..|-.+|++++.|++..+.+.
T Consensus 142 ~~~~~~~w~lgd~~Gil~~tP~~l~~~~~ 170 (299)
T PF05231_consen 142 FLSMWLTWWLGDALGILLLTPLLLLLFRP 170 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788899999999999999999987644
No 24
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=32.88 E-value=4.4e+02 Score=25.07 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHHHhhhhhhhhhccCCccccccCCCCCccchH--HHHHHhHHHHHHHHHHHHHHHHh---------------------
Q psy4670 462 GENMLRGLMGWYMVQSGLEDRFHTQSDVPRVSQY--RLASHLSMAFLLYSGLLWTALDH--------------------- 518 (643)
Q Consensus 462 ~lv~lQG~LG~~~V~sgL~p~~~~~~~~~~vSp~--~va~HLl~A~li~~lllwlal~l--------------------- 518 (643)
..+++|-+.|..+........ .... ....|...|+++..+.++-.+..
T Consensus 15 ~~~i~l~~tG~~~~~~~~~~~---------~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T PF01292_consen 15 LSFIALIATGLWIHFPPPGLY---------FGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF 85 (182)
T ss_pred HHHHHHHHHHHHHhccccccc---------ccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 345577778877765542211 1111 37789999999888875544433
Q ss_pred -hCccchhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCch
Q psy4670 519 -LLPSSKQLADNRAGLLRFKR-LAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPT 596 (643)
Q Consensus 519 -~~~~~~~~~~~~~~~~~lr~-la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~ 596 (643)
.+.+ .+ +........+ .-.+..+++.+++++|-......+ ..+|.. + ...+...
T Consensus 86 ~~~~~-~p---~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~----~~~~~~-----~-----------~~~~~~~ 141 (182)
T PF01292_consen 86 LLRGK-PP---PAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASA----EGFPLF-----A-----------ASPGGAQ 141 (182)
T ss_pred HhcCC-CC---CCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCccc-----c-----------ccchHHH
Confidence 1111 00 0111122223 345556777788888887753101 112221 0 0112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4670 597 TVQFDHRVLGISVFSLLTAQYWMGR 621 (643)
Q Consensus 597 ~Vqf~HR~lA~l~~~~~l~l~~~~~ 621 (643)
....+|...|+.....++.-.+.+.
T Consensus 142 ~~~~vH~~~a~~~i~~i~~Hv~~a~ 166 (182)
T PF01292_consen 142 IARSVHFFLAWLLIAFIILHVYAAL 166 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999988866665554443
No 25
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=30.13 E-value=2e+02 Score=29.24 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccC--CchHHHHHHHHHHHHHHHHH
Q psy4670 536 FKRLAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTE--NPTTVQFDHRVLGISVFSLL 613 (643)
Q Consensus 536 lr~la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~e--n~~~Vqf~HR~lA~l~~~~~ 613 (643)
...+...+.....+|+++|.+.+-.|- |+.....+....-..| .--.+...|+..|-..++.+
T Consensus 22 ~~~~G~ll~~~~~iqiiTGi~La~~Y~---------------p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~ 86 (200)
T cd00284 22 WWNFGSLLGTCLVIQILTGVFLAMHYT---------------PDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc---------------CChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHH
Confidence 344555667788899999999996633 3221111110000001 11368999999999888776
Q ss_pred HHHHHH
Q psy4670 614 TAQYWM 619 (643)
Q Consensus 614 l~l~~~ 619 (643)
..-..+
T Consensus 87 ~lH~~r 92 (200)
T cd00284 87 YLHIFR 92 (200)
T ss_pred HHHHHH
Confidence 655433
No 26
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=28.83 E-value=2.2e+02 Score=26.75 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcccCchh----hHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCccchHHHHHHHHHHHHHHH
Q psy4670 161 AAFFIPASIFWYKGYFNSAM----KKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVSQYRLASHLSMAFLLYS 236 (643)
Q Consensus 161 l~~l~~~~~~~~~~~~~~~~----~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~~al~~~~ 236 (643)
++.++.++|.+..++.+.++ .....+-+ +=|++|--+..--+.|+ +-.-|.-.+++..
T Consensus 41 lIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acF----flG~f~ySA~vraqyPe--------------iGSNFfp~il~l~ 102 (117)
T PF07226_consen 41 LIALVLAVYCLYQRYLNHPMPEGTPKLALACF----FLGLFGYSAFVRAQYPE--------------IGSNFFPSILCLI 102 (117)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHH----HHHHHHHHHHHHHhchh--------------hhhhHHHHHHHHH
Confidence 44566677777766554422 22222222 23566666666666655 5667788889999
Q ss_pred HHHHHHHhhh
Q psy4670 237 GLLWTALDHL 246 (643)
Q Consensus 237 ~l~w~~l~~~ 246 (643)
+++|.+.++.
T Consensus 103 L~~Wi~~kl~ 112 (117)
T PF07226_consen 103 LVFWIGYKLG 112 (117)
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 27
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=27.01 E-value=2.7e+02 Score=28.59 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHH----HHHHHHHHHHHHHHHHHHHhCCccc-ccc--------c---C
Q psy4670 151 LHRMWGRCIGAAFFIPASIFWYKGYFNSAMKKRV----GVFGLLIACQGLMGWYMVQSGLEDR-FHI--------Q---S 214 (643)
Q Consensus 151 ~HR~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~~l----~~~~~lv~~Qg~lG~~mV~sgL~~~-~~~--------~---~ 214 (643)
.--..|.+.|++.++.++.+..||-.+++.+... ...+++...|.+.|-.+-...-... ... + .
T Consensus 87 ~~~~~g~~~G~l~lvGl~~Ll~RR~~~~~vr~~s~~~D~~~L~lLl~i~~tG~~~~~~~~~~~~~~~~~~v~~w~~sL~t 166 (222)
T PF02665_consen 87 LAEVLGDIAGLLALVGLLILLVRRLFDPRVRAISTPSDYFVLLLLLAIVLTGLLMEGVRIAGTDYWYRETVGPWLRSLFT 166 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHHHHHHHHCHHHHGCGTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHh
Confidence 4557788999998888888777665554433211 2244455555555544433322110 000 0 0
Q ss_pred CCC-----ccchHHHHHHHHHHHHHHHH
Q psy4670 215 DVP-----RVSQYRLASHLSMAFLLYSG 237 (643)
Q Consensus 215 ~~~-----~vs~~~lt~Hl~~al~~~~~ 237 (643)
-.| ..-|.....|+..+++.++.
T Consensus 167 f~p~~~~~~~~~~~~~~H~~l~~~l~a~ 194 (222)
T PF02665_consen 167 FNPDPELMTPVPLLFWLHMLLAFVLFAY 194 (222)
T ss_dssp T-TTGGGGTT--HHHHHHHHHHHHHHHH
T ss_pred cCCchHhhcCCCHHHHHHHHHHHHHHHH
Confidence 001 12355678999999987665
No 28
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=26.52 E-value=1.7e+02 Score=25.14 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHhC
Q psy4670 159 IGAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYMVQSG 205 (643)
Q Consensus 159 ~Gl~~l~~~~~~~~~~~~~~~~~~~l~~~~~lv~~Qg~lG~~mV~sg 205 (643)
+|+++++...|..-+ .+|+.+++.. +...++|-.+|+.+.++.
T Consensus 1 lGi~v~l~ia~l~S~--~rk~I~wr~V--~~gl~lQ~~la~~vl~~~ 43 (75)
T PF01773_consen 1 LGILVLLAIAWLFSE--NRKAIKWRTV--IWGLGLQFVLALFVLKTP 43 (75)
T ss_dssp HHHHHHHHHHHHH-S---GGG--HHHH--HHHHHHHHHHHHHHHTSH
T ss_pred CcHHHHHHHHHHHHC--CCCcCChHHH--HHHHHHHHHHHHHHHhhH
Confidence 467766666554432 2355566643 556677999999988765
No 29
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=24.36 E-value=6.2e+02 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred CccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhH
Q psy4670 490 PRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAGLLRFKRLAYMSKGLIFVTALSGA 555 (643)
Q Consensus 490 ~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~~~~lr~la~~~~~lv~vqI~lGa 555 (643)
..+--.++..|-.+|.++.-+.+..-....+.. ..+.|++++.+..+-+.+.+.|-
T Consensus 71 r~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~~----------~~~Hrki~r~t~piWlyvsvTGv 126 (133)
T PF04238_consen 71 RPVYLFILISHIILAIVALPLVLYTLYRALRGR----------FTRHRKIGRWTFPIWLYVSVTGV 126 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999999888877776665554321 22344555454444444444443
No 30
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=24.00 E-value=8.3e+02 Score=29.32 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=42.1
Q ss_pred CCCCCccchHHHHHHhHHHHHHHHHHHHHHHHhhCccchhhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy4670 486 QSDVPRVSQYRLASHLSMAFLLYSGLLWTALDHLLPSSKQLADNRAG-----LLRFKRLAYMSKGLIFVTALSGAFVAGL 560 (643)
Q Consensus 486 ~~~~~~vSp~~va~HLl~A~li~~lllwlal~l~~~~~~~~~~~~~~-----~~~lr~la~~~~~lv~vqI~lGa~Vag~ 560 (643)
+..+...+-+++..=++. ...+++.|..+.....+.++...+++. .+..+.....++++..+|+++|...++-
T Consensus 200 ~~~~~~~~wsi~svilLl--~~i~l~~wv~~~~~dhee~~~~~~~P~~k~~sQkva~lyf~~A~~Lf~vQiLlG~~~~hy 277 (717)
T COG3256 200 PPTTVNYMWSITSVILLL--VGIALLLWVYLKLTDHEEVPRPSEDPPLKYQSQKVALLYFFLAVALFVVQILLGGLTAHY 277 (717)
T ss_pred CCcchhhHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 334445566666666553 345667777777643222211111111 1223344566788999999999998876
Q ss_pred c
Q psy4670 561 D 561 (643)
Q Consensus 561 ~ 561 (643)
+
T Consensus 278 y 278 (717)
T COG3256 278 Y 278 (717)
T ss_pred E
Confidence 3
No 31
>PRK11056 hypothetical protein; Provisional
Probab=23.32 E-value=2.8e+02 Score=26.15 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcccCch----hhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCccchHHHHHHHHHHHHHHH
Q psy4670 161 AAFFIPASIFWYKGYFNSA----MKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRVSQYRLASHLSMAFLLYS 236 (643)
Q Consensus 161 l~~l~~~~~~~~~~~~~~~----~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~vs~~~lt~Hl~~al~~~~ 236 (643)
++.++..+|.+..++++++ +...+.+-+ +=|++|--+..--+.|+ +-.-|.-.+++..
T Consensus 41 lIaLvLavycLyQ~Yl~~~m~eg~P~~a~acF----flG~f~ySA~vraeyPe--------------iGSNF~p~il~~~ 102 (120)
T PRK11056 41 LIALVLAVYCLHQRYLNRPMPEGLPGLAAACF----FLGVFLYSAFVRAEYPE--------------IGSNFFPAVLSVI 102 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHH----HHHHHHHHHHHHhcCcc--------------cccchHHHHHHHH
Confidence 4456677777776655442 222222222 23566766666677665 4555777788899
Q ss_pred HHHHHHHhhh
Q psy4670 237 GLLWTALDHL 246 (643)
Q Consensus 237 ~l~w~~l~~~ 246 (643)
+++|.+.++.
T Consensus 103 L~~Wi~~kl~ 112 (120)
T PRK11056 103 LVFWIGRKLR 112 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 32
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.49 E-value=1.6e+02 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy4670 147 WMEYLHRMWGRCIGAAFFIPAS 168 (643)
Q Consensus 147 ~~E~~HR~~g~~~Gl~~l~~~~ 168 (643)
++-..||+.|...++.+++.++
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~l 25 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLAL 25 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999998888766554
No 33
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=20.05 E-value=4.6e+02 Score=29.31 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q psy4670 220 SQYRLASHLSMAFLLYSGLL 239 (643)
Q Consensus 220 s~~~lt~Hl~~al~~~~~l~ 239 (643)
.+|.++.||+.-|.+|..+=
T Consensus 319 m~~ll~lHLg~V~~lF~~lP 338 (372)
T TIGR02484 319 MGLLLALHLGAVAGAFLGLP 338 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 46788999988887777643
Done!