Query psy4670
Match_columns 643
No_of_seqs 277 out of 1294
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 44.7 21 0.00073 26.6 3.6 22 154-175 17-38 (44)
2 2l2t_A Receptor tyrosine-prote 42.2 25 0.00085 26.3 3.6 22 154-175 16-37 (44)
3 2k1k_A Ephrin type-A receptor 26.6 53 0.0018 23.6 3.1 22 154-175 17-38 (38)
4 1q16_C Cytochrome B-NR, respir 22.9 2.6E+02 0.0088 26.9 8.5 49 154-202 92-144 (225)
5 2wdq_D Succinate dehydrogenase 19.6 4.4E+02 0.015 22.8 9.2 83 150-242 17-109 (115)
6 2lur_A Kalata; beta hairpin, p 19.5 22 0.00074 23.6 -0.1 11 339-349 14-25 (29)
7 1q8c_A Hypothetical protein Mg 13.1 2E+02 0.0069 25.5 4.4 22 109-131 31-52 (151)
8 2cqn_A Formin-binding protein 12.2 1.6E+02 0.0053 24.2 3.2 41 110-154 24-65 (77)
9 1kqf_C FDH-N gamma, formate de 10.7 9.6E+02 0.033 22.3 10.4 22 495-516 52-73 (217)
10 4gd3_A NI/Fe-hydrogenase 1 B-t 8.3 1.1E+03 0.037 22.4 8.4 20 185-204 134-153 (235)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.67 E-value=21 Score=26.62 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy4670 154 MWGRCIGAAFFIPASIFWYKGY 175 (643)
Q Consensus 154 ~~g~~~Gl~~l~~~~~~~~~~~ 175 (643)
++|+++++++++..+++++|+|
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 4677888777777766655554
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.16 E-value=25 Score=26.29 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy4670 154 MWGRCIGAAFFIPASIFWYKGY 175 (643)
Q Consensus 154 ~~g~~~Gl~~l~~~~~~~~~~~ 175 (643)
++|+++++++++..+++++|+|
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHHhhhh
Confidence 4677777777776666555443
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.58 E-value=53 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy4670 154 MWGRCIGAAFFIPASIFWYKGY 175 (643)
Q Consensus 154 ~~g~~~Gl~~l~~~~~~~~~~~ 175 (643)
.+|.++|+..++.+++|++|||
T Consensus 17 VvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 17 IFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred ehHHHHHHHHHHHHHHHHeecC
Confidence 4566667776666666665553
No 4
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=22.94 E-value=2.6e+02 Score=26.87 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCchhhH----HHHHHHHHHHHHHHHHHHHH
Q psy4670 154 MWGRCIGAAFFIPASIFWYKGYFNSAMKK----RVGVFGLLIACQGLMGWYMV 202 (643)
Q Consensus 154 ~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~----~l~~~~~lv~~Qg~lG~~mV 202 (643)
..+.+.|++.++.++++..||...++... .-...+.++..+++.|..+-
T Consensus 92 ~~~~~~g~~~l~G~~~l~~RR~~~~~~R~~s~~~d~~il~ll~~i~~tGl~~~ 144 (225)
T 1q16_C 92 FAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTI 144 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999988887776654433222 33456667778888886663
No 5
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=19.61 E-value=4.4e+02 Score=22.79 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc---------ccC-chhhHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCcc
Q psy4670 150 YLHRMWGRCIGAAFFIPASIFWYKG---------YFN-SAMKKRVGVFGLLIACQGLMGWYMVQSGLEDRFHIQSDVPRV 219 (643)
Q Consensus 150 ~~HR~~g~~~Gl~~l~~~~~~~~~~---------~~~-~~~~~~l~~~~~lv~~Qg~lG~~mV~sgL~~~~~~~~~~~~v 219 (643)
+.||.-|-.+-+..+..+..+.... ..+ +-.+....+.+.....-+..|...+-....+.
T Consensus 17 i~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~l~~~~~H~~~Gir~ii~Dyv~~---------- 86 (115)
T 2wdq_D 17 ILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP---------- 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----------
Confidence 5799888776555443332222111 111 22333445566677789999999988776422
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy4670 220 SQYRLASHLSMAFLLYSGLLWTA 242 (643)
Q Consensus 220 s~~~lt~Hl~~al~~~~~l~w~~ 242 (643)
...|..+..+..+.++..++|-.
T Consensus 87 ~~~R~~l~~~~~~~~~~~~~~g~ 109 (115)
T 2wdq_D 87 LALRLMLQLVIVVALVVYVIYGF 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889888888888887744
No 6
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=19.45 E-value=22 Score=23.62 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=8.3
Q ss_pred Cc-ccccccCCC
Q psy4670 339 SM-VTWKLFGEK 349 (643)
Q Consensus 339 ~c-~~WP~cg~~ 349 (643)
|| -+||.||++
T Consensus 14 gc~cswpvcghf 25 (29)
T 2lur_A 14 GCTCSWPVCGHF 25 (29)
T ss_dssp TBEEETTEEECS
T ss_pred CcEecCccccee
Confidence 56 589999765
No 7
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=13.09 E-value=2e+02 Score=25.51 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.1
Q ss_pred cCCCChHHHHHHHHhhccCchhh
Q psy4670 109 KLPRNSAEWIEEFNLYKEYPEFK 131 (643)
Q Consensus 109 ~pP~~~~~w~~ef~~yk~~Pey~ 131 (643)
+.|.+.++++++|-+| ..||.+
T Consensus 31 flpk~a~~iqa~fl~y-d~~er~ 52 (151)
T 1q8c_A 31 FLPKEAEVIQADFLEY-DTKERQ 52 (151)
T ss_dssp GCCCCHHHHHHHHHHT-CCTTTC
T ss_pred hCcccHHHHHHHHHhc-CCcccc
Confidence 6899999999999999 677754
No 8
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=12.22 E-value=1.6e+02 Score=24.23 Aligned_cols=41 Identities=24% Similarity=0.462 Sum_probs=31.2
Q ss_pred CCCC-hHHHHHHHHhhccCchhhccCCCCChhhhhhHHHHHhHHHH
Q psy4670 110 LPRN-SAEWIEEFNLYKEYPEFKLKNKDITLEEFKRIWWMEYLHRM 154 (643)
Q Consensus 110 pP~~-~~~w~~ef~~yk~~Pey~~~n~~~~l~~fK~i~~~E~~HR~ 154 (643)
||.+ ...|...-.+....|+|+. .+.|+-....|-||++++
T Consensus 24 p~I~~~s~We~vr~~~e~~~~fka----v~~E~eR~~lFeeYi~~L 65 (77)
T 2cqn_A 24 PPIELDAVWEDIRERFVKEPAFED----ITLESERKRIFKDFMHVL 65 (77)
T ss_dssp SCCCTTCCHHHHHHHHTTSHHHHT----CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHccCHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 5543 6678888888889999985 445666666899999886
No 9
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=10.66 E-value=9.6e+02 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy4670 495 YRLASHLSMAFLLYSGLLWTAL 516 (643)
Q Consensus 495 ~~va~HLl~A~li~~lllwlal 516 (643)
.....|...|++++.++++..+
T Consensus 52 ~~~~~H~~~G~~~~~l~~~r~~ 73 (217)
T 1kqf_C 52 MGRILHPFFGIAIFVALMFMFV 73 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988876555
No 10
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=8.27 E-value=1.1e+03 Score=22.39 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4670 185 GVFGLLIACQGLMGWYMVQS 204 (643)
Q Consensus 185 ~~~~~lv~~Qg~lG~~mV~s 204 (643)
.++.+++.+|.+.|+.|...
T Consensus 134 ~~l~~ll~~~~ltG~~~~~~ 153 (235)
T 4gd3_A 134 FGYFLMSVFMIITGFALYSE 153 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45677888899999988654
Done!