Query psy4670
Match_columns 643
No_of_seqs 277 out of 1294
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 22:49:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cqna1 a.159.2.1 (A:743-806) 16.7 45 0.0033 24.9 2.9 42 109-154 16-58 (64)
2 d3cx5c2 f.21.1.2 (C:1-261) Mit 14.9 1.5E+02 0.011 27.5 7.2 67 539-620 32-100 (261)
3 d1ppjc2 f.21.1.2 (C:15-260) Mi 13.7 2.4E+02 0.017 25.7 8.2 66 539-619 19-86 (246)
4 d1q90b_ f.21.1.2 (B:) Cytochro 12.9 1.8E+02 0.013 26.0 6.9 69 539-620 33-101 (212)
5 d1q8ca_ a.79.1.2 (A:) Hypothet 12.5 1E+02 0.0075 25.0 4.4 22 109-131 20-41 (140)
6 d1qopb_ c.79.1.1 (B:) Tryptoph 11.2 36 0.0026 33.5 1.3 36 109-153 15-54 (390)
7 d2dlka1 g.37.1.1 (A:8-37) Zinc 8.7 38 0.0027 21.2 0.2 11 339-350 2-12 (30)
8 d1y5ic1 f.21.3.1 (C:1-225) Res 8.6 5.7E+02 0.042 22.1 12.6 49 153-201 91-143 (225)
9 d1ma3a_ c.31.1.5 (A:) AF0112, 7.9 68 0.0049 29.0 1.8 18 91-108 19-40 (252)
10 d2hg7a1 d.186.2.1 (A:1-60) Pha 7.2 93 0.0068 22.6 1.8 29 101-131 32-60 (60)
No 1
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.66 E-value=45 Score=24.91 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=33.0
Q ss_pred cCCC-ChHHHHHHHHhhccCchhhccCCCCChhhhhhHHHHHhHHHH
Q psy4670 109 KLPR-NSAEWIEEFNLYKEYPEFKLKNKDITLEEFKRIWWMEYLHRM 154 (643)
Q Consensus 109 ~pP~-~~~~w~~ef~~yk~~Pey~~~n~~~~l~~fK~i~~~E~~HR~ 154 (643)
.||. .+.+|++-=+++-.-|.|. ++|+|.=.-..+.||+|=+
T Consensus 16 ~Ppi~~~s~WeevR~r~ene~AF~----aitlEsERiRiFkef~~~l 58 (64)
T d2cqna1 16 APPIELDAVWEDIRERFVKEPAFE----DITLESERKRIFKDFMHVL 58 (64)
T ss_dssp SSCCCTTCCHHHHHHHHTTSHHHH----TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHhccHHHH----HhHHHHHHHHHHHHHHHHH
Confidence 4675 4788998888888888887 7888876655889999854
No 2
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.86 E-value=1.5e+02 Score=27.47 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCccc--ccccCCchHHHHHHHHHHHHHHHHHHHH
Q psy4670 539 LAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPL--RNFTENPTTVQFDHRVLGISVFSLLTAQ 616 (643)
Q Consensus 539 la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w--~n~~en~~~Vqf~HR~lA~l~~~~~l~l 616 (643)
+.-.+.....+|+++|.+.+-.|- |+.+.+.+... .+-.+.--.++..|+..|-..++.+..-
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~---------------p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH 96 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYS---------------SNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMH 96 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC---------------CSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheec---------------CChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHH
Confidence 445566777899999999996642 33222211100 0001112368999999999888877665
Q ss_pred HHHH
Q psy4670 617 YWMG 620 (643)
Q Consensus 617 ~~~~ 620 (643)
..+.
T Consensus 97 ~~r~ 100 (261)
T d3cx5c2 97 MAKG 100 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 3
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.66 E-value=2.4e+02 Score=25.72 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcc--cccccCCchHHHHHHHHHHHHHHHHHHHH
Q psy4670 539 LAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPP--LRNFTENPTTVQFDHRVLGISVFSLLTAQ 616 (643)
Q Consensus 539 la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~--w~n~~en~~~Vqf~HR~lA~l~~~~~l~l 616 (643)
+.-.+.....+|+++|.+.+-.|- |+.+...+.. ..+-..---.+...|+..|-..++.+..-
T Consensus 19 ~G~ll~~~~~iqiiTGi~L~~~Y~---------------p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lH 83 (246)
T d1ppjc2 19 FGSLLGICLILQILTGLFLAMHYT---------------SDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMH 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC---------------CCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---------------CChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHH
Confidence 444566778899999999996532 2221111110 00001111258899999998888776655
Q ss_pred HHH
Q psy4670 617 YWM 619 (643)
Q Consensus 617 ~~~ 619 (643)
..+
T Consensus 84 m~r 86 (246)
T d1ppjc2 84 VGR 86 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.87 E-value=1.8e+02 Score=26.04 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccccCCCcCCCCCCCCccccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy4670 539 LAYMSKGLIFVTALSGAFVAGLDAGLVYNSFPLMADRLIPTDILALEPPLRNFTENPTTVQFDHRVLGISVFSLLTAQYW 618 (643)
Q Consensus 539 la~~~~~lv~vqI~lGa~Vag~~AGlac~tfP~m~g~~iP~~~~~~~~~w~n~~en~~~Vqf~HR~lA~l~~~~~l~l~~ 618 (643)
+.-.+.....+|+++|.+.+-.|. |..++.+- ......++ ..---.+...|+..|-..++.+..-..
T Consensus 33 ~Gsll~~~~~iqi~TGi~L~~~Y~-------p~~~~A~~-----Sv~~I~~~-v~~G~liR~lH~~gAs~~~~~~~lHm~ 99 (212)
T d1q90b_ 33 IGGITFTCFLVQVATGFAMTFYYR-------PTVAEAFA-----SVQYIMTD-VNFGWLIRSIHRWSASMMVLMMVLHVF 99 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC-------CSTTTHHH-----HHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHH-----HHHHHhhh-CCCchhhcccccccchHHHHHHHHHHH
Confidence 445566788899999999986533 22222110 00000010 001126888999999988887776655
Q ss_pred HH
Q psy4670 619 MG 620 (643)
Q Consensus 619 ~~ 620 (643)
+.
T Consensus 100 r~ 101 (212)
T d1q90b_ 100 RV 101 (212)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=12.49 E-value=1e+02 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.1
Q ss_pred cCCCChHHHHHHHHhhccCchhh
Q psy4670 109 KLPRNSAEWIEEFNLYKEYPEFK 131 (643)
Q Consensus 109 ~pP~~~~~w~~ef~~yk~~Pey~ 131 (643)
+.|.+.++++++|-.| .+||.+
T Consensus 20 flpk~a~~iqa~fl~y-d~~er~ 41 (140)
T d1q8ca_ 20 FLPKEAEVIQADFLEY-DTKERQ 41 (140)
T ss_dssp GCCCCHHHHHHHHHHT-CCTTTC
T ss_pred hCcccHHHHHHHHHhc-CCcccc
Confidence 6799999999999999 677754
No 6
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=11.21 E-value=36 Score=33.53 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=26.2
Q ss_pred cCCCC----hHHHHHHHHhhccCchhhccCCCCChhhhhhHHHHHhHHH
Q psy4670 109 KLPRN----SAEWIEEFNLYKEYPEFKLKNKDITLEEFKRIWWMEYLHR 153 (643)
Q Consensus 109 ~pP~~----~~~w~~ef~~yk~~Pey~~~n~~~~l~~fK~i~~~E~~HR 153 (643)
+.|-+ -+|++++|++++..|||. +||.. ++.+|++|
T Consensus 15 ~~pe~l~~~~~~l~~~~~~~~~~~~f~--------~e~~~-~~~~~~gr 54 (390)
T d1qopb_ 15 YVPQILMPALNQLEEAFVSAQKDPEFQ--------AQFAD-LLKNYAGR 54 (390)
T ss_dssp ESCGGGHHHHHHHHHHHHHHHTCHHHH--------HHHHH-HHHHTTCC
T ss_pred eCCHHHHHHHHHHHHHHHHHHcCHHHH--------HHHHH-HHHhcCCC
Confidence 66643 488999999999999986 35443 56677666
No 7
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.68 E-value=38 Score=21.18 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=8.2
Q ss_pred CcccccccCCCC
Q psy4670 339 SMVTWKLFGEKL 350 (643)
Q Consensus 339 ~c~~WP~cg~~~ 350 (643)
.| |+|.||.+.
T Consensus 2 ~c-df~gc~kif 12 (30)
T d2dlka1 2 PC-DFPGCGRIF 12 (30)
T ss_dssp EC-SSTTTCCEE
T ss_pred CC-CCCCchhhh
Confidence 35 899998754
No 8
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=8.60 E-value=5.7e+02 Score=22.07 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchhhH----HHHHHHHHHHHHHHHHHHH
Q psy4670 153 RMWGRCIGAAFFIPASIFWYKGYFNSAMKK----RVGVFGLLIACQGLMGWYM 201 (643)
Q Consensus 153 R~~g~~~Gl~~l~~~~~~~~~~~~~~~~~~----~l~~~~~lv~~Qg~lG~~m 201 (643)
-..|.+.|++.++.+++++.||...++.+. --..++.+..++.+.|-.+
T Consensus 91 ~~~g~i~g~l~liG~~~ll~RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~~ 143 (225)
T d1y5ic1 91 MFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLT 143 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999988777654443222 1133455556666666553
No 9
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.94 E-value=68 Score=29.03 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=8.1
Q ss_pred hhccCCCCCC----CCCCCccc
Q psy4670 91 TRLTESGLSM----VTWKLFGE 108 (643)
Q Consensus 91 tRLT~SGLgc----pdWp~c~G 108 (643)
+=+||||+|- ||-..-.|
T Consensus 19 vv~tGAGiS~~SGiPdfR~~~G 40 (252)
T d1ma3a_ 19 VVFTGAGISAESGIPTFRGEDG 40 (252)
T ss_dssp EEEECGGGSCC----------C
T ss_pred EEEECchhhhhhCCCCccCcCC
Confidence 4578888886 66655555
No 10
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=7.18 E-value=93 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCCCccccCCCChHHHHHHHHhhccCchhh
Q psy4670 101 VTWKLFGEKLPRNSAEWIEEFNLYKEYPEFK 131 (643)
Q Consensus 101 pdWp~c~G~pP~~~~~w~~ef~~yk~~Pey~ 131 (643)
-+|..-- |--|++|.+...++|+..|.|+
T Consensus 32 ~eW~l~a--P~PTe~EL~~~w~e~q~np~y~ 60 (60)
T d2hg7a1 32 EKWNLRA--PLPTQAELETWWEELQKNPPYE 60 (60)
T ss_dssp EEECSSS--CCCCHHHHHHHHHHHHHSCCCC
T ss_pred heeecCC--CCCcHHHHHHHHHHHhhCCCCC
Confidence 6666543 4347999999999999999874
Done!