RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4670
         (643 letters)



>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus
           [TaxId: 11033]}
          Length = 149

 Score = 29.5 bits (66), Expect = 0.69
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 84  AVVLGGVTRLTESGLSMVTW--KLFGEKLPRNSAEW 117
           A+VLGG    + + LS+VTW   +     P  S EW
Sbjct: 114 AIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW 149



 Score = 29.5 bits (66), Expect = 0.69
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 324 AVVLGGVTRLTESGLSMVTW--KLFGEKLPRNSAEW 357
           A+VLGG    + + LS+VTW   +     P  S EW
Sbjct: 114 AIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW 149


>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId:
           11034]}
          Length = 152

 Score = 28.7 bits (64), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 84  AVVLGGVTRLTESGLSMVTWKLFG---EKLPRNSAEW 117
           A+VLGG    T + LS+VTW   G   +  P  + EW
Sbjct: 116 AIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 152



 Score = 28.7 bits (64), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 324 AVVLGGVTRLTESGLSMVTWKLFG---EKLPRNSAEW 357
           A+VLGG    T + LS+VTW   G   +  P  + EW
Sbjct: 116 AIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW 152


>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine
           encephalitis virus [TaxId: 11036]}
          Length = 156

 Score = 28.7 bits (64), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 84  AVVLGGVTRLTESGLSMVTW--KLFGEKL-PRNSAEW 117
           A+VLGGV   + + LS+V W  K    K  P N  +W
Sbjct: 120 AIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW 156



 Score = 28.7 bits (64), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 324 AVVLGGVTRLTESGLSMVTW--KLFGEKL-PRNSAEW 357
           A+VLGGV   + + LS+V W  K    K  P N  +W
Sbjct: 120 AIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW 156


>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 28.9 bits (64), Expect = 1.7
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 118 IEEFNLYKEYPEFKLKNKDITLEE-FKRIWWMEYLHRM 154
            +EF   ++    ++     TL E   ++        M
Sbjct: 116 PDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNM 153


>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
           adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 28.6 bits (63), Expect = 1.9
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 110 LPRNSAEWIEEFNLYKEYPEFKLKNKDITLEEFKR 144
           +P    E+IE+ NLY    E   +N  + L   +R
Sbjct: 236 VPDLVQEYIEKHNLYSSESED--RNAGVILAPLQR 268


>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
           4 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 312

 Score = 28.0 bits (61), Expect = 3.5
 Identities = 10/120 (8%), Positives = 32/120 (26%), Gaps = 8/120 (6%)

Query: 82  FGAVVLGGVTRLTESGLSMVTWKLFGEKLPRNSAEWIEEFNLYKEYPEFKLKNKDITLEE 141
           +G  +    + L +  ++ V+ ++   +   +   +    + +        K      + 
Sbjct: 36  WGFALTKTFS-LDKDIVTNVSPRIV--RGTTSGPMYGPGQSSFLNIELISEKTAAYWCQS 92

Query: 142 FKRIWWMEYLHRMWGRCIGAAFFIPASIFWYKGYFNSAMKKRVGVFGLLIACQGLMGWYM 201
              +             + A+     +   +      A         L ++C   MG   
Sbjct: 93  VTELKAD-----FPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERG 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,391,244
Number of extensions: 110840
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 15
Length of query: 643
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 552
Effective length of database: 1,158,166
Effective search space: 639307632
Effective search space used: 639307632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.5 bits)