Query psy4671
Match_columns 104
No_of_seqs 139 out of 802
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:50:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2725|consensus 99.9 4.1E-23 8.8E-28 158.3 5.1 97 2-98 312-408 (411)
2 PTZ00127 cytochrome c oxidase 99.8 4E-20 8.7E-25 145.4 12.7 97 2-98 307-403 (403)
3 PF02628 COX15-CtaA: Cytochrom 99.7 8.2E-17 1.8E-21 121.7 11.6 89 2-90 214-302 (302)
4 COG1612 CtaA Uncharacterized p 99.7 2.2E-15 4.8E-20 115.8 12.6 93 4-96 220-313 (323)
5 PF02628 COX15-CtaA: Cytochrom 99.2 1E-09 2.2E-14 83.0 12.4 91 9-99 63-155 (302)
6 COG1612 CtaA Uncharacterized p 98.9 3.7E-08 8.1E-13 76.0 11.7 91 8-98 72-163 (323)
7 PTZ00127 cytochrome c oxidase 98.7 3.7E-07 7.9E-12 72.3 12.5 86 11-96 141-239 (403)
8 PF00033 Cytochrom_B_N: Cytoch 87.6 6.9 0.00015 26.6 12.4 87 7-93 40-168 (188)
9 KOG2725|consensus 87.2 1 2.2E-05 35.7 4.1 90 6-95 141-243 (411)
10 smart00665 B561 Cytochrome b-5 85.1 8.6 0.00019 25.3 10.9 49 43-91 70-123 (129)
11 PF04238 DUF420: Protein of un 83.9 11 0.00024 25.6 7.9 54 13-67 77-130 (133)
12 PF01654 Bac_Ubq_Cox: Bacteria 80.6 7.7 0.00017 31.4 6.6 62 3-64 166-234 (436)
13 PF01292 Ni_hydr_CYTB: Prokary 74.1 24 0.00053 23.9 11.9 80 14-93 43-162 (182)
14 PRK15097 cytochrome d terminal 68.4 27 0.00059 29.1 7.0 60 3-62 172-238 (522)
15 PRK15035 cytochrome bd-II oxid 67.7 27 0.00059 29.0 6.9 60 3-62 172-238 (514)
16 cd08554 Cyt_b561 Eukaryotic cy 65.4 35 0.00077 22.3 12.3 82 10-91 32-125 (131)
17 TIGR02125 CytB-hydogenase Ni/F 62.8 50 0.0011 23.1 11.6 45 49-93 121-184 (211)
18 COG1271 CydA Cytochrome bd-typ 57.8 47 0.001 27.3 6.5 61 5-65 176-243 (457)
19 PF10348 DUF2427: Domain of un 57.2 51 0.0011 21.4 6.0 21 44-64 81-101 (105)
20 PF12159 DUF3593: Protein of u 45.5 81 0.0018 20.3 6.6 50 20-69 6-56 (91)
21 cd00284 Cytochrome_b_N Cytochr 44.9 1E+02 0.0022 22.2 6.0 58 11-68 69-130 (200)
22 PRK10639 formate dehydrogenase 43.6 1.2E+02 0.0026 21.7 12.0 89 6-94 46-169 (211)
23 MTH00016 CYTB cytochrome b; Va 42.5 1.7E+02 0.0036 23.3 7.3 55 11-65 78-134 (378)
24 PF01773 Nucleos_tra2_N: Na+ d 41.0 83 0.0018 19.1 5.7 19 50-68 24-42 (75)
25 TIGR01583 formate-DH-gamm form 39.5 1.4E+02 0.003 21.2 12.4 86 9-94 44-167 (204)
26 MTH00145 CYTB cytochrome b; Pr 36.3 2E+02 0.0044 22.8 6.9 56 11-66 78-135 (379)
27 COG1969 HyaC Ni,Fe-hydrogenase 36.1 69 0.0015 23.8 3.9 31 8-38 177-207 (227)
28 cd08766 Cyt_b561_ACYB-1_like P 35.5 1.5E+02 0.0032 20.4 11.1 49 44-92 78-131 (144)
29 MTH00191 CYTB cytochrome b; Pr 35.4 2E+02 0.0044 22.6 6.8 55 12-66 75-131 (365)
30 cd08760 Cyt_b561_FRRS1_like Eu 35.2 1.5E+02 0.0033 20.5 8.9 82 8-90 64-153 (191)
31 CHL00070 petB cytochrome b6 34.9 1.6E+02 0.0034 21.6 5.8 53 12-64 81-137 (215)
32 COG3038 CybB Cytochrome B561 [ 33.3 1.8E+02 0.004 20.8 8.8 58 43-100 11-73 (181)
33 PF03188 Cytochrom_B561: Eukar 33.3 1.4E+02 0.003 19.4 11.3 82 9-91 31-124 (137)
34 MTH00131 CYTB cytochrome b; Pr 33.2 2.3E+02 0.0051 22.5 6.8 55 12-66 78-134 (380)
35 MTH00100 CYTB cytochrome b; Pr 32.6 2.5E+02 0.0055 22.3 7.7 57 11-67 77-135 (379)
36 MTH00086 CYTB cytochrome b; Pr 32.5 2.5E+02 0.0055 22.2 7.3 54 12-65 67-122 (355)
37 MTH00119 CYTB cytochrome b; Pr 31.1 2.7E+02 0.0058 22.1 7.1 54 12-65 79-134 (380)
38 PLN02680 carbon-monoxide oxyge 30.8 2.3E+02 0.005 21.2 12.1 82 12-93 81-171 (232)
39 COG2322 Predicted membrane pro 29.9 1.6E+02 0.0034 21.2 4.8 55 13-68 118-172 (177)
40 MTH00034 CYTB cytochrome b; Va 29.6 2.9E+02 0.0063 22.0 7.2 54 12-65 78-133 (379)
41 PRK03735 cytochrome b6; Provis 29.0 1.4E+02 0.003 22.0 4.6 54 11-64 88-145 (223)
42 MTH00224 CYTB cytochrome b; Pr 27.8 2.2E+02 0.0047 22.7 5.8 52 12-63 79-132 (379)
43 PF09990 DUF2231: Predicted me 27.1 1.7E+02 0.0036 18.4 6.9 58 10-67 36-99 (104)
44 KOG0065|consensus 26.9 4.3E+02 0.0093 25.1 8.0 52 47-98 572-623 (1391)
45 PRK13553 fumarate reductase cy 26.4 2.9E+02 0.0064 21.0 7.2 47 21-68 81-137 (258)
46 cd08761 Cyt_b561_CYB561D2_like 26.3 2.3E+02 0.0049 19.7 11.3 81 11-91 55-149 (183)
47 COG4267 Predicted membrane pro 25.0 3.9E+02 0.0085 22.0 11.0 86 16-101 132-217 (467)
48 PF13630 SdpI: SdpI/YhfL prote 24.4 1.5E+02 0.0033 17.1 7.1 26 7-32 17-42 (76)
49 MTH00022 CYTB cytochrome b; Va 24.2 2.1E+02 0.0046 22.7 5.2 57 11-67 76-134 (379)
50 COG5395 Predicted membrane pro 24.2 1.1E+02 0.0023 20.7 3.0 23 4-27 4-26 (131)
51 COG2181 NarI Nitrate reductase 23.2 1.6E+02 0.0035 22.0 4.0 21 49-69 126-146 (228)
52 PF01102 Glycophorin_A: Glycop 22.8 2E+02 0.0044 19.3 4.2 18 83-100 78-95 (122)
53 MTH00156 CYTB cytochrome b; Pr 22.5 3.1E+02 0.0066 21.6 5.7 53 11-63 67-121 (356)
54 PF11694 DUF3290: Protein of u 22.3 2.7E+02 0.0059 19.2 6.8 36 32-67 34-69 (149)
55 PF06197 DUF998: Protein of un 21.7 2.6E+02 0.0057 18.7 8.3 72 16-94 41-121 (184)
56 cd08763 Cyt_b561_CYB561 Verteb 21.3 2.8E+02 0.006 18.9 11.4 50 44-93 78-132 (143)
57 PRK03735 cytochrome b6; Provis 21.2 1.9E+02 0.0041 21.3 4.1 44 48-91 45-107 (223)
58 MTH00074 CYTB cytochrome b; Pr 20.7 4.4E+02 0.0095 20.9 6.8 54 12-65 79-134 (380)
59 KOG3637|consensus 20.6 78 0.0017 28.6 2.3 28 69-96 975-1002(1030)
No 1
>KOG2725|consensus
Probab=99.88 E-value=4.1e-23 Score=158.30 Aligned_cols=97 Identities=48% Similarity=0.818 Sum_probs=93.6
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy4671 2 FVNKFTENPTTVQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSG 81 (104)
Q Consensus 2 ~~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~ 81 (104)
+|||+||||++|||.||..||.++..+..+++..+|...|++.+.......+++..|+.|||.|+++.+|+++|.+||.|
T Consensus 312 iwrN~~ENp~tVQ~~HRila~tt~~ai~~~~~~~rr~~lpkr~k~ai~~~v~~v~~QatLGv~TLl~yVPv~Laa~HQaG 391 (411)
T KOG2725|consen 312 IWRNFFENPTTVQFDHRILAITTVTAITALYLITRRAPLPKRTKMAINVTVAVVTTQATLGVSTLLYYVPVPLAAAHQAG 391 (411)
T ss_pred HHHHhhcCCceEEeehhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhheeeeeeccchhHhhhhcc
Confidence 69999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy4671 82 SLILLSMALWLSHEMKH 98 (104)
Q Consensus 82 a~~Ll~~~~~~~~~~~~ 98 (104)
+..+++..+++.+.+|+
T Consensus 392 sLalLt~aL~l~~~Lrr 408 (411)
T KOG2725|consen 392 SLALLTSALWLAHELRR 408 (411)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 99999999999999886
No 2
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=99.84 E-value=4e-20 Score=145.40 Aligned_cols=97 Identities=42% Similarity=0.629 Sum_probs=89.1
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy4671 2 FVNKFTENPTTVQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSG 81 (104)
Q Consensus 2 ~~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~ 81 (104)
+|+|++||+.++||.||.+|++++++++++.+..+|.+.++..++....+.+++++|+.+|+.|+++++|++++.+||++
T Consensus 307 ~~~~~~e~~~~vqf~HR~~A~l~~l~~l~l~~~~~r~~~~~~~~~~~~~ll~lv~lQi~LGi~tv~~~lP~~la~~H~~g 386 (403)
T PTZ00127 307 WYKNFFENTAVVQFNHRVLAYLTFLSSLGLYYKARKLNLPKSVRRLLMALLGALTLQVLLGITTLLSQVPVHLAVAHQFG 386 (403)
T ss_pred hHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 58899999999999999999999999999888888766666688888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy4671 82 SLILLSMALWLSHEMKH 98 (104)
Q Consensus 82 a~~Ll~~~~~~~~~~~~ 98 (104)
|++++++++++++..|+
T Consensus 387 A~lLl~~~~~l~~~~~~ 403 (403)
T PTZ00127 387 ALVLLTTLLRLCHVLRR 403 (403)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987764
No 3
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.72 E-value=8.2e-17 Score=121.72 Aligned_cols=89 Identities=35% Similarity=0.426 Sum_probs=83.3
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy4671 2 FVNKFTENPTTVQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSG 81 (104)
Q Consensus 2 ~~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~ 81 (104)
.|+|.+||+..+|+.||.+|+++++.++++.+..+|++.+++.++....+.+++.+|+.+|+.++++++|.+++..||.+
T Consensus 214 ~~~~~~~~~~~v~~~Hr~~A~~~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~ll~~Qv~lGi~~v~~~~p~~l~~~H~~~ 293 (302)
T PF02628_consen 214 DWRNFFDNPGTVQFIHRLLALLVLLLLLALAVRAWRRRRSRALRRLAVLLLALLLLQVLLGILTVLTGLPVWLALLHQAG 293 (302)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 47899999999999999999999999999999988877668899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4671 82 SLILLSMAL 90 (104)
Q Consensus 82 a~~Ll~~~~ 90 (104)
|+++++.++
T Consensus 294 a~ll~~~lv 302 (302)
T PF02628_consen 294 AALLLAALV 302 (302)
T ss_pred HHHHHHHHC
Confidence 999998763
No 4
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-15 Score=115.82 Aligned_cols=93 Identities=31% Similarity=0.384 Sum_probs=82.2
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy4671 4 NKFTENPTTVQFDHRVLGISVFSLLTAQYWMGRKL-KLPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSGS 82 (104)
Q Consensus 4 ~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~-~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~a 82 (104)
+|..|++..+|+.||.+||.++.++++..+..+|+ +.++..++....++.++.+|+.+|+.|+.+++|+++++.||+++
T Consensus 220 ~~~~~~~~~vq~~Hr~~a~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~l~~lv~~Q~~~Gi~tv~~~vpl~~a~~H~~~~ 299 (323)
T COG1612 220 TNLGESPETVQFVHRLGAYLVFVAALLLLVAALRRAPLTRAARTRAVVLLALVTLQAALGILTVLLGVPLALALAHQAAA 299 (323)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 57889999999999999999999999886666554 56677888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4671 83 LILLSMALWLSHEM 96 (104)
Q Consensus 83 ~~Ll~~~~~~~~~~ 96 (104)
.++++..++.....
T Consensus 300 ~~ll~~~~~~a~~~ 313 (323)
T COG1612 300 LVLLATALLHAWLL 313 (323)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888875433
No 5
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.15 E-value=1e-09 Score=83.04 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=82.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q psy4671 9 NPTTVQFDHRVLGISVFSLLTAQYWMGRK-LKLPGRANLALACVTGMAYMQVALGITTLLTYV-PVSIAALHQSGSLILL 86 (104)
Q Consensus 9 ~~~~vqf~HR~~A~l~~~~~~~l~~~~~r-~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~v-p~~la~~Hq~~a~~Ll 86 (104)
....+++.||..|.++.+.++...+..++ ++.+++.++.......++..|+.+|..++.+++ +.+....|...|.+++
T Consensus 63 ~~~~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~ 142 (302)
T PF02628_consen 63 FHTWIEWGHRLLAGLVGLLILALAVWAWRKRRIRRRLRWLALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIF 142 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 36789999999999999999988888776 456778888899999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy4671 87 SMALWLSHEMKHV 99 (104)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (104)
+.+++.....+++
T Consensus 143 ~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 143 ALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887766
No 6
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.7e-08 Score=76.02 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=78.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy4671 8 ENPTTVQFDHRVLGISVFSLLTAQYWMGRKLK-LPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSGSLILL 86 (104)
Q Consensus 8 e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~~-~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~a~~Ll 86 (104)
.....+.|.||+.|-.+.+.++...+.+++++ .+++.++......+++.+|.++|.+|+.++.+......|-..++.++
T Consensus 72 ~~~~~iE~~HRl~a~~~gl~vi~l~~~aw~~~~~~r~~~~~~i~~l~l~~lQgliG~~tV~~gl~~~~~~~h~~la~~l~ 151 (323)
T COG1612 72 KLIFWIEWFHRLLAGLIGLLVLLLAILAWRRRRISRELKLAAILALALLILQGLIGGWTVTSGLLPRIVASHLRLAMHLF 151 (323)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 34568999999999888888888888777654 47789999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcc
Q psy4671 87 SMALWLSHEMKH 98 (104)
Q Consensus 87 ~~~~~~~~~~~~ 98 (104)
.+++.+.-....
T Consensus 152 aa~~il~~~~~~ 163 (323)
T COG1612 152 AALVILALLIWT 163 (323)
T ss_pred HHHHHHHHHHhc
Confidence 888877655443
No 7
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=98.72 E-value=3.7e-07 Score=72.28 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTA-QYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTYV------------PVSIAAL 77 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~-l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~v------------p~~la~~ 77 (104)
..+.+.||+.+.++.+.+++ +.+..+|++.+++.......+..++..|..+|.++|.+|+ ..+...+
T Consensus 141 ~~~E~~HRllg~~lGl~~l~~l~~~~~~~~~~~~~~~~l~~ll~L~~~Qg~lG~~~V~sgL~~~~~~~~~p~Vs~~rla~ 220 (403)
T PTZ00127 141 FFWEWLHRMLGRSIGLFFGLPLLYFAAKGYLKPRMLKRLSAIGGLGGAQGFVGWWMVKSGLDEPLTENKKPRVSPYRLAA 220 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhHHHHH
Confidence 48999999999999888875 3344444433333333344567778999999999999998 3566789
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy4671 78 HQSGSLILLSMALWLSHEM 96 (104)
Q Consensus 78 Hq~~a~~Ll~~~~~~~~~~ 96 (104)
|.++|.++++.+.+.....
T Consensus 221 Hll~al~i~~~l~~~~~~l 239 (403)
T PTZ00127 221 HLFNAFVIYSLLLWNGLTL 239 (403)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988755
No 8
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=87.59 E-value=6.9 Score=26.58 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=58.8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------cCchhHHHHHHHHHHHHHH
Q psy4671 7 TENPTTVQFDHRVLGISVFSLLTAQYWMGRKL-----------------------------KLPGRANLALACVTGMAYM 57 (104)
Q Consensus 7 ~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~-----------------------------~~~~~~r~~~~~l~~lv~~ 57 (104)
.+.....+..|+..+++..+..+.-..+..++ +.++..|-....+...+..
T Consensus 40 ~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (188)
T PF00033_consen 40 FPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLL 119 (188)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 34567788999999999988877665554333 1122344445566778999
Q ss_pred HHHHHHHH----------HH---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 58 QVALGITT----------LL---TYVPVSIAALHQSGSLILLSMALWLS 93 (104)
Q Consensus 58 Qv~lGi~t----------v~---~~vp~~la~~Hq~~a~~Ll~~~~~~~ 93 (104)
+.++|... .. .+..-.....|..++.++....+...
T Consensus 120 ~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi 168 (188)
T PF00033_consen 120 MAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHI 168 (188)
T ss_dssp HHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 11 13335778999988888776665543
No 9
>KOG2725|consensus
Probab=87.23 E-value=1 Score=35.75 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=66.9
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH------------
Q psy4671 6 FTENPTTVQFDHRVLGISVFSLLTAQYWMGR-KLKLPGRANLALACVTGMAYMQVALGITTLLTYVPV------------ 72 (104)
Q Consensus 6 ~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~-r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~------------ 72 (104)
-|...-...+.||+..=.+.+..+.=..+.+ +.+..+..++....+..++.+|..+|-+.+.+|+..
T Consensus 141 EFKfIf~mEy~HRmwGR~iG~vflLPa~Yf~~kg~~s~~~~krl~gL~~L~~lQG~iGWwMVKSGLee~~~~~~~PrVSq 220 (411)
T KOG2725|consen 141 EFKFIFFMEYSHRMWGRAIGLVFLLPAAYFWRKGRFSPGMKKRLLGLTGLVGLQGLIGWWMVKSGLEEESDSHDVPRVSQ 220 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhceeehhhhHHHHHhcccCcchhhHHHHHHHHHHhccceeEEEeecCCCCCCCCCCCCcchH
Confidence 3456667899999998777665554333333 445555677777788999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 73 SIAALHQSGSLILLSMALWLSHE 95 (104)
Q Consensus 73 ~la~~Hq~~a~~Ll~~~~~~~~~ 95 (104)
+=-..|..-|..+-+...|..+.
T Consensus 221 YRLAtHL~sAf~LY~g~lWtgls 243 (411)
T KOG2725|consen 221 YRLATHLGSAFVLYCGSLWTGLS 243 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34568999999999988887663
No 10
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=85.07 E-value=8.6 Score=25.30 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHH
Q psy4671 43 RANLALACVTGMAYMQVALGITTLLTY-----VPVSIAALHQSGSLILLSMALW 91 (104)
Q Consensus 43 ~~r~~~~~l~~lv~~Qv~lGi~tv~~~-----vp~~la~~Hq~~a~~Ll~~~~~ 91 (104)
..........++..+|...|....... -+...-..|...+...+...+.
T Consensus 70 ~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~ 123 (129)
T smart00665 70 LHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIV 123 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778889999999999987654 3567788999887776665544
No 11
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=83.90 E-value=11 Score=25.64 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 13 VQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLL 67 (104)
Q Consensus 13 vqf~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~ 67 (104)
+=..|...|.+...+.+...+...|.+ ..+.||.+.+....-..=..+|+..++
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~-~~~Hrki~r~t~piWlyvsvTGvvVYl 130 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGR-FTRHRKIGRWTFPIWLYVSVTGVVVYL 130 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999888888877763 345677777777777777788887664
No 12
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=80.58 E-value=7.7 Score=31.37 Aligned_cols=62 Identities=13% Similarity=-0.078 Sum_probs=37.2
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCchh----HHHHHHHHHHHHHHHHHHHHH
Q psy4671 3 VNKFTENPTTVQFDHRVLGISVFSLLTAQYWMGR---KLKLPGR----ANLALACVTGMAYMQVALGIT 64 (104)
Q Consensus 3 ~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~---r~~~~~~----~r~~~~~l~~lv~~Qv~lGi~ 64 (104)
|.-+++.....++.|+..|-.++.......+.++ |++...- .+-+....++....|...|=.
T Consensus 166 ~~~~~NP~~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~ 234 (436)
T PF01654_consen 166 WAAFFNPSFWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGRDREYFRKSLKIGLVIGLIAAILQPFSGDW 234 (436)
T ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3445544446999999998877766655554443 3322222 233344456677788887765
No 13
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=74.09 E-value=24 Score=23.87 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HhccCc------hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 14 QFDHRVLGISVFSLLTAQYWMG----------------------RKLKLP------GRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 14 qf~HR~~A~l~~~~~~~l~~~~----------------------~r~~~~------~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
...|...+++.....+.-..+. .+.+.| +..+.......+++.+|+++|...
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~ 122 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLL 122 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4469999999888875544433 232222 112333556788999999999999
Q ss_pred HHh------------hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 66 LLT------------YVPVSIAALHQSGSLILLSMALWLS 93 (104)
Q Consensus 66 v~~------------~vp~~la~~Hq~~a~~Ll~~~~~~~ 93 (104)
... +..-.....|...+..+++......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv 162 (182)
T PF01292_consen 123 WFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHV 162 (182)
T ss_pred HHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652 3345778999988888776555443
No 14
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=68.45 E-value=27 Score=29.11 Aligned_cols=60 Identities=15% Similarity=-0.035 Sum_probs=35.1
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc----hhHHHHHHHHHHHHHHHHHHH
Q psy4671 3 VNKFTENPTTVQFDHRVLGISVFSLLTAQYWM---GRKLKLP----GRANLALACVTGMAYMQVALG 62 (104)
Q Consensus 3 ~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~---~~r~~~~----~~~r~~~~~l~~lv~~Qv~lG 62 (104)
|.-++++....+|.|=+.|..++...++..+. ..|++.. +..|-+....++...+|+..|
T Consensus 172 ~a~~~NP~~~~~f~H~~~aa~~tg~f~v~gvsA~~llr~r~~~~~r~~~~i~l~~~li~~~~~~~~G 238 (522)
T PRK15097 172 SELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLG 238 (522)
T ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456555579999988776665555444433 3343322 223444445566777788777
No 15
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=67.71 E-value=27 Score=29.04 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=34.0
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCch----hHHHHHHHHHHHHHHHHHHH
Q psy4671 3 VNKFTENPTTVQFDHRVLGISVFSLLTAQYWM---GRKLKLPG----RANLALACVTGMAYMQVALG 62 (104)
Q Consensus 3 ~~n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~---~~r~~~~~----~~r~~~~~l~~lv~~Qv~lG 62 (104)
|.-+|+.....+|.|=+.|..++...++..+. ..|++... ..|-+....++...+|+..|
T Consensus 172 ~avi~NP~~~~~f~H~~~aa~~tg~~~v~gvsA~~lLr~r~~~~~r~~l~i~l~~~li~~~~~~~~G 238 (514)
T PRK15035 172 SELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALRSFAIGSVFGTLAIIGTLQLG 238 (514)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455444569999988776665555444333 33433222 23334444566677777777
No 16
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=65.43 E-value=35 Score=22.27 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-----CchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHH
Q psy4671 10 PTTVQFDHRVLGISVFSLLTAQYWMGRKL--K-----LPGRANLALACVTGMAYMQVALGITTLLTYV-----PVSIAAL 77 (104)
Q Consensus 10 ~~~vqf~HR~~A~l~~~~~~~l~~~~~r~--~-----~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~v-----p~~la~~ 77 (104)
+......|+.+-.+.++..++-.....+. . ..+...+.......+..+|.++|.......- |...-..
T Consensus 32 ~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~ 111 (131)
T cd08554 32 KRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPF 111 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 44556689887776655554433222221 1 1123456667788899999999999976432 5788999
Q ss_pred HHHHHHHHHHHHHH
Q psy4671 78 HQSGSLILLSMALW 91 (104)
Q Consensus 78 Hq~~a~~Ll~~~~~ 91 (104)
|...+...+...+.
T Consensus 112 H~~~G~~~~~la~~ 125 (131)
T cd08554 112 HRFFGLAIFVLAIA 125 (131)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887777665554
No 17
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=62.80 E-value=50 Score=23.11 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhH--------------HHHHHHHHHHHHHHHHHHHHH
Q psy4671 49 ACVTGMAYMQVALGITTLL-----TYVPV--------------SIAALHQSGSLILLSMALWLS 93 (104)
Q Consensus 49 ~~l~~lv~~Qv~lGi~tv~-----~~vp~--------------~la~~Hq~~a~~Ll~~~~~~~ 93 (104)
..+.++...|.++|+.... .+.|. .....|...+.++++..+...
T Consensus 121 ~~l~~~~~~~~lTG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~iH~~~a~~l~~~i~~Hi 184 (211)
T TIGR02125 121 FGFIVLILFMILTGLALYYYHNGLGGLLPSLFGWVEPLFGGLANVRFIHHLGMWAFVIFVPVHV 184 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678889999998764 11111 145789988877766655443
No 18
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=57.77 E-value=47 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.067 Sum_probs=35.3
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCchhHHHH----HHHHHHHHHHHHHHHHHH
Q psy4671 5 KFTENPTTVQFDHRVLGISVFSLLTAQYWMGR---KLKLPGRANLA----LACVTGMAYMQVALGITT 65 (104)
Q Consensus 5 n~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~---r~~~~~~~r~~----~~~l~~lv~~Qv~lGi~t 65 (104)
-.+++....-+.|-+.|...+...++..+.++ |.+..+..|+. ....++....|+.+|=..
T Consensus 176 ~i~NPs~~~~~~H~v~a~~~tgaf~v~gisAy~llk~r~~~~~k~~l~ia~~~~~~~~~~~~~~Gd~~ 243 (457)
T COG1271 176 AVFNPSFPYRFVHTVLAAYLTGAFVVAGISAYYLLKGRDKEFAKKSLKIALVFGLIFAILQIVLGDLS 243 (457)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444456889998888776666555544443 43333333433 333456777888877543
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=57.19 E-value=51 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4671 44 ANLALACVTGMAYMQVALGIT 64 (104)
Q Consensus 44 ~r~~~~~l~~lv~~Qv~lGi~ 64 (104)
..+.++.+.++.++|..+|+.
T Consensus 81 H~k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 81 HGKMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666654
No 20
>PF12159 DUF3593: Protein of unknown function (DUF3593); InterPro: IPR021995 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.
Probab=45.54 E-value=81 Score=20.28 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q psy4671 20 LGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLL-TY 69 (104)
Q Consensus 20 ~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~-~~ 69 (104)
++..++-+...+++..+.+..|+....+...++..|..-+..||..-. +|
T Consensus 6 F~lSl~pYL~FL~~l~~~~~~p~l~~~GF~~~LlFV~vTI~a~i~A~~~yg 56 (91)
T PF12159_consen 6 FALSLFPYLGFLWFLTRSKTFPRLTLFGFWFLLLFVAVTIPAGIYAKTVYG 56 (91)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555556655443456666778888888899999999988755 44
No 21
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=44.90 E-value=1e+02 Score=22.22 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK---LKLPGR-ANLALACVTGMAYMQVALGITTLLT 68 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r---~~~~~~-~r~~~~~l~~lv~~Qv~lGi~tv~~ 68 (104)
-.+...|+.+|...++.+.....+..- .++|++ .......+..+......+|...-+.
T Consensus 69 ~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~~l~~l~~~~af~GY~Lpw~ 130 (200)
T cd00284 69 WLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWG 130 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 468899999999988887665554321 122333 3333445566777777777654443
No 22
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=43.59 E-value=1.2e+02 Score=21.69 Aligned_cols=89 Identities=9% Similarity=0.089 Sum_probs=55.6
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------cCc------hhHHHHHHHHHHHHHHH
Q psy4671 6 FTENPTTVQFDHRVLGISVFSLLTAQYWMGRKL---------------------KLP------GRANLALACVTGMAYMQ 58 (104)
Q Consensus 6 ~~e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~---------------------~~~------~~~r~~~~~l~~lv~~Q 58 (104)
.+.++....+.|+..+++.++..+.......|. ..| ...|-....+.+..+.+
T Consensus 46 ~~g~~~~~r~iH~~~g~i~~~~~~~~~~~~~~~~~~~~~d~~w~~~~~~~~~~~~~p~~~kyN~~qk~~y~~~~~~~~~~ 125 (211)
T PRK10639 46 ILGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLL 125 (211)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 344555677899999999888877654443322 011 12233344455667889
Q ss_pred HHHHHHHHH----hhhh----HHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 59 VALGITTLL----TYVP----VSIAALHQSGSLILLSMALWLSH 94 (104)
Q Consensus 59 v~lGi~tv~----~~vp----~~la~~Hq~~a~~Ll~~~~~~~~ 94 (104)
+++|..... ...| -.....|-..+.++.+..+...+
T Consensus 126 ~iTGl~l~~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 126 LVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998652 1222 24677899888888877765443
No 23
>MTH00016 CYTB cytochrome b; Validated
Probab=42.48 E-value=1.7e+02 Score=23.35 Aligned_cols=55 Identities=11% Similarity=-0.161 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
-.+...|+.+|...++.+.....+..- +-+.++....+..+..++...+.+|...
T Consensus 78 w~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~~~W~~Gv~l~~l~m~~af~GYvL 134 (378)
T MTH00016 78 WLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVL 134 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhHHHHHHHHHHHHhhhcc
Confidence 357889999999998887665555321 1112234445556667777777777543
No 24
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=41.04 E-value=83 Score=19.14 Aligned_cols=19 Identities=26% Similarity=0.086 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy4671 50 CVTGMAYMQVALGITTLLT 68 (104)
Q Consensus 50 ~l~~lv~~Qv~lGi~tv~~ 68 (104)
.+...+.+|..+|...+.+
T Consensus 24 ~V~~gl~lQ~~la~~vl~~ 42 (75)
T PF01773_consen 24 TVIWGLGLQFVLALFVLKT 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4677899999999988764
No 25
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=39.53 E-value=1.4e+02 Score=21.20 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------cCc------hhHHHHHHHHHHHHHHHH
Q psy4671 9 NPTTVQFDHRVLGISVFSLLTAQYWMGRKL-----------------------KLP------GRANLALACVTGMAYMQV 59 (104)
Q Consensus 9 ~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~-----------------------~~~------~~~r~~~~~l~~lv~~Qv 59 (104)
++......|+..+++.++..+.......|. ..| ...|-....+..+..+|+
T Consensus 44 ~~~~~~~~H~~~g~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~ 123 (204)
T TIGR01583 44 ELWVAKNLHPFAGILFFISIIPMFLKWWRRMIPAKYDIRWMMKVGGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMI 123 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhchHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 344567789999998877765543322111 011 112333344555788999
Q ss_pred HHHHHHHHhhhh-----H----HHHHHHHHHHHHHHHHHHHHHH
Q psy4671 60 ALGITTLLTYVP-----V----SIAALHQSGSLILLSMALWLSH 94 (104)
Q Consensus 60 ~lGi~tv~~~vp-----~----~la~~Hq~~a~~Ll~~~~~~~~ 94 (104)
++|........| . +....|...+.++.+..+...+
T Consensus 124 ~TGl~m~~~~~~~~~~~~~~~~~~~~~H~~~a~l~~~~vi~Hiy 167 (204)
T TIGR01583 124 ITGIFMWFLDFPSTAFSIELLRISALIHNFSAIILAVGFIVHIY 167 (204)
T ss_pred HHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998843323 2 3446899888877766655443
No 26
>MTH00145 CYTB cytochrome b; Provisional
Probab=36.27 E-value=2e+02 Score=22.82 Aligned_cols=56 Identities=11% Similarity=-0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITTL 66 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv 66 (104)
-.+...|+.+|...++.+.....+..- +-+.+.....+..+..++...+.+|...-
T Consensus 78 w~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GYvLp 135 (379)
T MTH00145 78 WLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHHHHHHHHHHHHhhccC
Confidence 357889999999998887665554321 11112345555566777888888886543
No 27
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=36.08 E-value=69 Score=23.77 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=26.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4671 8 ENPTTVQFDHRVLGISVFSLLTAQYWMGRKL 38 (104)
Q Consensus 8 e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~ 38 (104)
.|...+++-||+++.++.+.+++-.+.+.|.
T Consensus 177 Gg~~dvh~wHrl~mW~ii~FvivHVYmaire 207 (227)
T COG1969 177 GGSADVHFWHRLGMWLIIAFVIVHVYMAIRE 207 (227)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 3667899999999999999999888777664
No 28
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.49 E-value=1.5e+02 Score=20.36 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-h----hhHHHHHHHHHHHHHHHHHHHHH
Q psy4671 44 ANLALACVTGMAYMQVALGITTLLT-Y----VPVSIAALHQSGSLILLSMALWL 92 (104)
Q Consensus 44 ~r~~~~~l~~lv~~Qv~lGi~tv~~-~----vp~~la~~Hq~~a~~Ll~~~~~~ 92 (104)
..+.+....++..+|...|..+.+. + ....+-..|...+...+...+..
T Consensus 78 HSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t 131 (144)
T cd08766 78 HSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIAT 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888999999999998764 2 23456668997777766655543
No 29
>MTH00191 CYTB cytochrome b; Provisional
Probab=35.44 E-value=2e+02 Score=22.63 Aligned_cols=55 Identities=11% Similarity=-0.116 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITTL 66 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv 66 (104)
.+...|+.+|...++.+.....+..- +-+.++....+..+..++.....+|...-
T Consensus 75 ~~R~~H~~gas~~~~~~~~H~~r~~~~gsy~~~~~W~~G~~l~~l~~~~~f~Gy~Lp 131 (365)
T MTH00191 75 LLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheeccchhhHhhHHHHHHHHHHHHhhcccc
Confidence 46789999999999887766555421 11112345555566777778888776543
No 30
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.20 E-value=1.5e+02 Score=20.54 Aligned_cols=82 Identities=18% Similarity=0.067 Sum_probs=45.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHh----c--cCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH
Q psy4671 8 ENPTTVQFDHRVLGISVFSLLTAQYWMGRK----L--KLPGRANLALACVTGMAYMQVALGITTLLTYV--PVSIAALHQ 79 (104)
Q Consensus 8 e~~~~vqf~HR~~A~l~~~~~~~l~~~~~r----~--~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~v--p~~la~~Hq 79 (104)
+++...+ .|+..-.+.++..++-...... . ............+.++.++|..+|+..-...- ....-..|-
T Consensus 64 ~~~~~~~-~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~ 142 (191)
T cd08760 64 GDPVWFY-LHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR 142 (191)
T ss_pred CCchhHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence 3555555 7887766544443332222211 1 12233566677788899999999985443221 123478888
Q ss_pred HHHHHHHHHHH
Q psy4671 80 SGSLILLSMAL 90 (104)
Q Consensus 80 ~~a~~Ll~~~~ 90 (104)
..+.+......
T Consensus 143 ~~G~~~~~l~~ 153 (191)
T cd08760 143 WLGRAALILAI 153 (191)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 31
>CHL00070 petB cytochrome b6
Probab=34.91 E-value=1.6e+02 Score=21.62 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchh-HHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRK---LKLPGR-ANLALACVTGMAYMQVALGIT 64 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r---~~~~~~-~r~~~~~l~~lv~~Qv~lGi~ 64 (104)
.+...|+.+|...++.+.....+..- -++|++ .......+..++.....+|..
T Consensus 81 l~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~Gv~l~~l~m~~af~GY~ 137 (215)
T CHL00070 81 LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYS 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCcHHHHHHHHHHHHHHHcccc
Confidence 57889999999999888776655421 123333 334445556666666666643
No 32
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=33.30 E-value=1.8e+02 Score=20.81 Aligned_cols=58 Identities=17% Similarity=0.069 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHH-HHHHHHHHHhcccc
Q psy4671 43 RANLALACVTGMAYMQVALGITTLLT----YVPVSIAALHQSGSLILL-SMALWLSHEMKHVK 100 (104)
Q Consensus 43 ~~r~~~~~l~~lv~~Qv~lGi~tv~~----~vp~~la~~Hq~~a~~Ll-~~~~~~~~~~~~~~ 100 (104)
..+..=+..+.+++.|.++|..-... +....+-..|...|..++ .++..+..+.+.++
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~ 73 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPA 73 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444466777899999999988774 233477889985555444 44555555665433
No 33
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=33.28 E-value=1.4e+02 Score=19.36 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHh-h----hhHHHHH
Q psy4671 9 NPTTVQFDHRVLGISVFSLLTAQYWMGR--KLK-----LPGRANLALACVTGMAYMQVALGITTLLT-Y----VPVSIAA 76 (104)
Q Consensus 9 ~~~~vqf~HR~~A~l~~~~~~~l~~~~~--r~~-----~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~-~----vp~~la~ 76 (104)
++... ..|+..-.+.++..+.-..... +.. .............++...|...|+..... + .....-.
T Consensus 31 ~~~~~-~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~ 109 (137)
T PF03188_consen 31 RKWWF-RIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNK 109 (137)
T ss_pred cchHH-HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHH
Confidence 33334 3787776655544433322222 221 11235666778888999999999999873 1 1123334
Q ss_pred HHHHHHHHHHHHHHH
Q psy4671 77 LHQSGSLILLSMALW 91 (104)
Q Consensus 77 ~Hq~~a~~Ll~~~~~ 91 (104)
.|...+...+...+.
T Consensus 110 ~H~~~G~~~~~l~~~ 124 (137)
T PF03188_consen 110 WHRWLGYLIYVLAIA 124 (137)
T ss_pred HHHHHHHHHHHHHHH
Confidence 499776665554443
No 34
>MTH00131 CYTB cytochrome b; Provisional
Probab=33.16 E-value=2.3e+02 Score=22.46 Aligned_cols=55 Identities=11% Similarity=-0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGR--KLKLPGRANLALACVTGMAYMQVALGITTL 66 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~--r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv 66 (104)
.+...|+.+|...++.+.....+.. .+-+.++....+..+..++.....+|...-
T Consensus 78 ~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~~~~~W~~G~~l~~l~~~~~f~Gy~Lp 134 (380)
T MTH00131 78 LIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHhHHHHHHHHHHHHHhccCc
Confidence 5778999999999888766554432 111112344445556666777777775443
No 35
>MTH00100 CYTB cytochrome b; Provisional
Probab=32.57 E-value=2.5e+02 Score=22.26 Aligned_cols=57 Identities=11% Similarity=-0.150 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITTLL 67 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~ 67 (104)
-.+...|+.+|...++.+.....+..- +-+.++....+..+..++...+.+|...-+
T Consensus 77 ~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~Lpw 135 (379)
T MTH00100 77 WIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPW 135 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHhccCh
Confidence 357889999999999887666555421 111223444455566677777777765444
No 36
>MTH00086 CYTB cytochrome b; Provisional
Probab=32.50 E-value=2.5e+02 Score=22.17 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
.+...|+.+|...++.+.....+..- +-+.++....+..+..++...+.+|...
T Consensus 67 liR~~H~~gas~~f~~~ylHi~R~~~ygsy~~~~~W~~Gv~l~~l~m~~af~GYvL 122 (355)
T MTH00086 67 LFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVL 122 (355)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHhhhhc
Confidence 68899999999988887665544321 1122234444455566666666666544
No 37
>MTH00119 CYTB cytochrome b; Provisional
Probab=31.10 E-value=2.7e+02 Score=22.08 Aligned_cols=54 Identities=9% Similarity=-0.126 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
.+...|+.+|...++.+.....+..- +-+.+.....+..+..++.....+|...
T Consensus 79 ~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~~f~Gy~L 134 (380)
T MTH00119 79 LIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhceecccchhhhhhHHHHHHHHHHHHhccc
Confidence 57889999999999887766655421 1111223444455566666666666543
No 38
>PLN02680 carbon-monoxide oxygenase
Probab=30.81 E-value=2.3e+02 Score=21.18 Aligned_cols=82 Identities=11% Similarity=-0.039 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-c---CchhHHHHHHHHHHHHHHHHHHHHHHHHh-h----hhHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRKL-K---LPGRANLALACVTGMAYMQVALGITTLLT-Y----VPVSIAALHQSGS 82 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r~-~---~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~-~----vp~~la~~Hq~~a 82 (104)
.+|..--..|.+..+..+...+..... . ..+-..+......++..+|...|..+.+. + ....+-.-|...+
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 345554555555555444443332211 1 11224566677788999999999999664 2 2133457899888
Q ss_pred HHHHHHHHHHH
Q psy4671 83 LILLSMALWLS 93 (104)
Q Consensus 83 ~~Ll~~~~~~~ 93 (104)
...+...+...
T Consensus 161 ~~if~LaiaT~ 171 (232)
T PLN02680 161 IYIYALAVATA 171 (232)
T ss_pred HHHHHHHHHHH
Confidence 77776655543
No 39
>COG2322 Predicted membrane protein [Function unknown]
Probab=29.92 E-value=1.6e+02 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4671 13 VQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLT 68 (104)
Q Consensus 13 vqf~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~ 68 (104)
+-+.|-.+|.+.+-+.+...+..++... .+.|+...+...+=+.-..+|+.++++
T Consensus 118 iL~~Hi~LA~i~vPLal~al~~a~~~~~-~rHrki~r~ta~~Wlyva~tGv~VYLm 172 (177)
T COG2322 118 ILITHIILAAINVPLALYALILAWKGLY-ERHRKIGRWTAPLWLYVALTGVVVYLM 172 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcchh-hhhheeeehhhHHHHHHHHHHHHHhhe
Confidence 5678999998888777777777766532 234444444444455556788887764
No 40
>MTH00034 CYTB cytochrome b; Validated
Probab=29.58 E-value=2.9e+02 Score=21.96 Aligned_cols=54 Identities=9% Similarity=-0.133 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGR--KLKLPGRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~--r~~~~~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
.+...|+.+|...++.+.....+.. ..-+.++....+..+..+......+|...
T Consensus 78 ~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~L 133 (379)
T MTH00034 78 LLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVL 133 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHhHHHHHHHHHHHHhhcCc
Confidence 5788999999999888766555542 11111233444455566666666666543
No 41
>PRK03735 cytochrome b6; Provisional
Probab=28.99 E-value=1.4e+02 Score=22.04 Aligned_cols=54 Identities=11% Similarity=-0.175 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchh-HHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK---LKLPGR-ANLALACVTGMAYMQVALGIT 64 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r---~~~~~~-~r~~~~~l~~lv~~Qv~lGi~ 64 (104)
-.+...|+.+|...++.+..-..+..- .++||+ .......+..++.....+|..
T Consensus 88 wliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~Gv~l~~l~~~~af~GY~ 145 (223)
T PRK03735 88 WIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYL 145 (223)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCCCCceeHHHHHHHHHHHHHHhcccc
Confidence 357889999999999988776555321 123333 233444555666666666643
No 42
>MTH00224 CYTB cytochrome b; Provisional
Probab=27.75 E-value=2.2e+02 Score=22.74 Aligned_cols=52 Identities=10% Similarity=-0.137 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRK--LKLPGRANLALACVTGMAYMQVALGI 63 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r--~~~~~~~r~~~~~l~~lv~~Qv~lGi 63 (104)
.+...|+.+|...++.+.....+..- .-+.++....+..+..++.....+|.
T Consensus 79 ~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GY 132 (379)
T MTH00224 79 LLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGY 132 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHhHHHHHHHHHHHHeEe
Confidence 57789999999888876665555421 11122233344445556666666554
No 43
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=27.06 E-value=1.7e+02 Score=18.35 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-H-HhccCchhHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy4671 10 PTTVQFDHRVLGISVFSLLTAQYWM-G-RKLKLPGRANLAL----ACVTGMAYMQVALGITTLL 67 (104)
Q Consensus 10 ~~~vqf~HR~~A~l~~~~~~~l~~~-~-~r~~~~~~~r~~~----~~l~~lv~~Qv~lGi~tv~ 67 (104)
...+-..|+.....+..+...+..+ . .|.+.++..+... .....++..|.-+|--.+.
T Consensus 36 ~~~~~~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy 99 (104)
T PF09990_consen 36 AHRVAWLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVY 99 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456778999888877776663322 1 2333222222222 2234466777777755443
No 44
>KOG0065|consensus
Probab=26.85 E-value=4.3e+02 Score=25.07 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4671 47 ALACVTGMAYMQVALGITTLLTYVPVSIAALHQSGSLILLSMALWLSHEMKH 98 (104)
Q Consensus 47 ~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~a~~Ll~~~~~~~~~~~~ 98 (104)
....+...++-|.+.|+.-....+-.-...++..|++.++....+..+.+.+
T Consensus 572 F~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~ 623 (1391)
T KOG0065|consen 572 FIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPK 623 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeec
Confidence 3346777899999999999999999999999999999999999887665543
No 45
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=26.43 E-value=2.9e+02 Score=21.00 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHH----------HHHHHHHHHHHHHHh
Q psy4671 21 GISVFSLLTAQYWMGRKLKLPGRANLALACVTG----------MAYMQVALGITTLLT 68 (104)
Q Consensus 21 A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~----------lv~~Qv~lGi~tv~~ 68 (104)
+..+++..+...++..|+ .|.+.++....--- +=..|...|+.++++
T Consensus 81 ~~~I~l~~l~Ha~lalrk-~P~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~ 137 (258)
T PRK13553 81 AAGVILIFVVHAFLAMRK-FPINYRQYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFL 137 (258)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHH
Confidence 334555555555555443 22233333333333 567899999998874
No 46
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.30 E-value=2.3e+02 Score=19.65 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGR--KLK-----LPGRANLALACVTGMAYMQVALGITTLLT-------YVPVSIAA 76 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~--r~~-----~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~-------~vp~~la~ 76 (104)
..--..|...-.+.....+.-..... +.. .............++.++|.+.|...... .-|...-.
T Consensus 55 ~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~ 134 (183)
T cd08761 55 KTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKK 134 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHH
Confidence 34445787766655444433222222 211 11235566677888999999999988763 35677889
Q ss_pred HHHHHHHHHHHHHHH
Q psy4671 77 LHQSGSLILLSMALW 91 (104)
Q Consensus 77 ~Hq~~a~~Ll~~~~~ 91 (104)
.|...+...+...+.
T Consensus 135 ~H~~~G~~~~~l~~~ 149 (183)
T cd08761 135 YHRLSGYVAYLLGLA 149 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999666655554443
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=25.04 E-value=3.9e+02 Score=22.00 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 16 DHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSGSLILLSMALWLSHE 95 (104)
Q Consensus 16 ~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~vp~~la~~Hq~~a~~Ll~~~~~~~~~ 95 (104)
.-|..++..++.....|....--..-++-++......+--..-+++|..-...+....+=..-.+....++....+..+.
T Consensus 132 ~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 132 VYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLKSPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 44778888887776666544322222344555555555666777888877777555444444555556666666666666
Q ss_pred hccccc
Q psy4671 96 MKHVKR 101 (104)
Q Consensus 96 ~~~~~~ 101 (104)
.+.++.
T Consensus 212 fk~~~~ 217 (467)
T COG4267 212 FKSSRR 217 (467)
T ss_pred cccccc
Confidence 666554
No 48
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.44 E-value=1.5e+02 Score=17.10 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=18.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 7 TENPTTVQFDHRVLGISVFSLLTAQY 32 (104)
Q Consensus 7 ~e~~~~vqf~HR~~A~l~~~~~~~l~ 32 (104)
.+|+..-.+.||..+.......+...
T Consensus 17 ~~s~~~W~~a~r~~g~~~~~~Gi~~~ 42 (76)
T PF13630_consen 17 MKSDENWKKAHRFAGKIFIIGGIVLL 42 (76)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999988866665554433
No 49
>MTH00022 CYTB cytochrome b; Validated
Probab=24.21 E-value=2.1e+02 Score=22.73 Aligned_cols=57 Identities=11% Similarity=-0.102 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGR--KLKLPGRANLALACVTGMAYMQVALGITTLL 67 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~--r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~ 67 (104)
-.+...|+.+|...++.+.....+.. ..-+.++....+..+..++...+.+|...-+
T Consensus 76 w~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GyvLpw 134 (379)
T MTH00022 76 FLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPW 134 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhcHHHHHHHHHHHHheeeecc
Confidence 35889999999999888766554432 1111223445555667777777888865443
No 50
>COG5395 Predicted membrane protein [Function unknown]
Probab=24.16 E-value=1.1e+02 Score=20.70 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=15.0
Q ss_pred cccccChHHHHHHHHHHHHHHHHH
Q psy4671 4 NKFTENPTTVQFDHRVLGISVFSL 27 (104)
Q Consensus 4 ~n~~e~~~~vqf~HR~~A~l~~~~ 27 (104)
....+.|..|| .|-..|....++
T Consensus 4 spll~Ap~vvQ-~H~~~ai~Al~l 26 (131)
T COG5395 4 SPLLAAPAVVQ-VHLFSAITALAL 26 (131)
T ss_pred chhcCCChhhh-HHHHHHHHHHHH
Confidence 34567888999 687766444333
No 51
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=23.21 E-value=1.6e+02 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy4671 49 ACVTGMAYMQVALGITTLLTY 69 (104)
Q Consensus 49 ~~l~~lv~~Qv~lGi~tv~~~ 69 (104)
.....++.+|+++|..+...+
T Consensus 126 ~f~lilLla~~~~Gl~~~~~~ 146 (228)
T COG2181 126 IFALLLLLAQLLLGLYATPFS 146 (228)
T ss_pred HHHHHHHHHHHHhhhhhhhhc
Confidence 567788999999999887755
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.76 E-value=2e+02 Score=19.27 Aligned_cols=18 Identities=0% Similarity=0.150 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy4671 83 LILLSMALWLSHEMKHVK 100 (104)
Q Consensus 83 ~~Ll~~~~~~~~~~~~~~ 100 (104)
+.....+.|+.+|.|++.
T Consensus 78 Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 333445566667776644
No 53
>MTH00156 CYTB cytochrome b; Provisional
Probab=22.48 E-value=3.1e+02 Score=21.63 Aligned_cols=53 Identities=9% Similarity=-0.116 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGR--KLKLPGRANLALACVTGMAYMQVALGI 63 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~--r~~~~~~~r~~~~~l~~lv~~Qv~lGi 63 (104)
-.+...|+.+|...++.+.....+.. ..-+.++....+..+..++.....+|.
T Consensus 67 w~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~~~~~W~~G~~l~~~~~~~af~GY 121 (356)
T MTH00156 67 WLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGY 121 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhhHHHHHHHHHHHHeee
Confidence 35788999999999988766554432 111112234444455555655555554
No 54
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.35 E-value=2.7e+02 Score=19.20 Aligned_cols=36 Identities=3% Similarity=-0.056 Sum_probs=20.5
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 32 YWMGRKLKLPGRANLALACVTGMAYMQVALGITTLL 67 (104)
Q Consensus 32 ~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~ 67 (104)
.+...|.+...+-|-.+..++.++++-+.+.+..+.
T Consensus 34 ~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~y~ 69 (149)
T PF11694_consen 34 FIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSDYQ 69 (149)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666777666665555555555555543
No 55
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=21.69 E-value=2.6e+02 Score=18.74 Aligned_cols=72 Identities=10% Similarity=-0.053 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHH--------HHHHHHHHHHHH
Q psy4671 16 DHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVALGITTLLTY-VPVSI--------AALHQSGSLILL 86 (104)
Q Consensus 16 ~HR~~A~l~~~~~~~l~~~~~r~~~~~~~r~~~~~l~~lv~~Qv~lGi~tv~~~-vp~~l--------a~~Hq~~a~~Ll 86 (104)
..+..-++..+..+...+..++.+.++..+.....+. ..|+.++..+ .|..- ...|...+...+
T Consensus 41 ~~~~~~~~~g~~~~~~a~~l~~~~~~~~~~~~~~ll~-------~~g~~~i~~g~fp~~~~~~~~s~~~~~H~~~a~~~f 113 (184)
T PF06197_consen 41 LFNIGFILSGVLFLAFAVGLFRARRRRLSRWGAVLLA-------LAGLGLILVGLFPMDPPGSAPSFSGQVHVLAAILAF 113 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-------HHHHHHHHhhcCCCCCcccCCCcccChHHHHHHHHH
Confidence 3355555555555555555555422222233222222 3444444433 23322 348998887777
Q ss_pred HHHHHHHH
Q psy4671 87 SMALWLSH 94 (104)
Q Consensus 87 ~~~~~~~~ 94 (104)
........
T Consensus 114 ~~~~~~~l 121 (184)
T PF06197_consen 114 LALALALL 121 (184)
T ss_pred HHHHHHHH
Confidence 66555443
No 56
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.34 E-value=2.8e+02 Score=18.94 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhh----HHHHHHHHHHHHHHHHHHHHHH
Q psy4671 44 ANLALACVTGMAYMQVALGITTLLT-YVP----VSIAALHQSGSLILLSMALWLS 93 (104)
Q Consensus 44 ~r~~~~~l~~lv~~Qv~lGi~tv~~-~vp----~~la~~Hq~~a~~Ll~~~~~~~ 93 (104)
..+......++..+|.+.|..+.+. +.+ ...-..|...+...+...+...
T Consensus 78 HswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~ 132 (143)
T cd08763 78 HSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTS 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566667788999999999988653 222 4455579988877776655543
No 57
>PRK03735 cytochrome b6; Provisional
Probab=21.25 E-value=1.9e+02 Score=21.31 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHHHHHHHHHHHHHHH
Q psy4671 48 LACVTGMAYMQVALGITTLLTYVPV-------------------SIAALHQSGSLILLSMALW 91 (104)
Q Consensus 48 ~~~l~~lv~~Qv~lGi~tv~~~vp~-------------------~la~~Hq~~a~~Ll~~~~~ 91 (104)
...+..+...|++.|+....+..|- .+=..|--+|-+.+..+..
T Consensus 45 G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~l 107 (223)
T PRK03735 45 GGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFL 107 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHH
Confidence 4466789999999999988876663 1234566666666555443
No 58
>MTH00074 CYTB cytochrome b; Provisional
Probab=20.69 E-value=4.4e+02 Score=20.95 Aligned_cols=54 Identities=7% Similarity=-0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGR--KLKLPGRANLALACVTGMAYMQVALGITT 65 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~--r~~~~~~~r~~~~~l~~lv~~Qv~lGi~t 65 (104)
.+...|+.+|...++.+.....+.. ..-+.++....+..+..+....+.+|...
T Consensus 79 ~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~L 134 (380)
T MTH00074 79 LMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVL 134 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhhHHHHHHHHHHHHHhccc
Confidence 4678999999999888766554432 11111234444455566666667766543
No 59
>KOG3637|consensus
Probab=20.55 E-value=78 Score=28.57 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4671 69 YVPVSIAALHQSGSLILLSMALWLSHEM 96 (104)
Q Consensus 69 ~vp~~la~~Hq~~a~~Ll~~~~~~~~~~ 96 (104)
.+|+|+-+.=.+++.+++++++++++.+
T Consensus 975 ~vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 975 PVPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999998865
Done!