Query psy4671
Match_columns 104
No_of_seqs 139 out of 802
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 22:50:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4671.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4671hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 36.5 53 0.0039 21.7 8.3 53 11-64 63-118 (246)
2 d1kqfc_ f.21.1.1 (C:) Formate 28.8 62 0.0045 20.0 12.6 86 9-94 48-170 (216)
3 d1q90a3 f.23.23.1 (A:248-292) 24.8 41 0.003 16.7 3.1 20 42-61 3-22 (45)
4 d1vf5c3 f.23.23.1 (C:250-286) 21.5 44 0.0032 15.9 3.1 20 42-61 4-23 (37)
5 d1q90b_ f.21.1.2 (B:) Cytochro 20.4 1.1E+02 0.0077 19.8 7.9 53 12-64 78-134 (212)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 15.1 1.4E+02 0.0099 18.8 4.9 21 46-66 124-144 (225)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 10.5 2.2E+02 0.016 18.6 8.7 56 11-66 76-135 (261)
8 d1k1xa1 a.8.3.2 (A:311-384) 4- 9.0 61 0.0045 17.7 1.2 19 2-20 2-21 (74)
9 d1kqfc_ f.21.1.1 (C:) Formate 9.0 2.1E+02 0.015 17.3 8.4 52 41-92 10-70 (216)
10 d2e9xb2 d.344.1.2 (B:1-61) DNA 3.9 1.5E+02 0.011 15.3 0.8 8 69-76 43-50 (61)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.50 E-value=53 Score=21.67 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--c-cCchhHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK--L-KLPGRANLALACVTGMAYMQVALGIT 64 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r--~-~~~~~~r~~~~~l~~lv~~Qv~lGi~ 64 (104)
-.++..|+.+|...++.+..-..+..- . +++| .......+..++..+..+|..
T Consensus 63 ~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~~~~-~w~~G~~l~~l~m~~af~GY~ 118 (246)
T d1ppjc2 63 WIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE-TWNIGVILLLTVMATAFMGYV 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHhHHHHHHHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHHHHHHeecc
Confidence 357889999999998887666555321 1 2333 344455667778888888854
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=28.78 E-value=62 Score=20.03 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------CchhHHHHHHHHHHHHHHHH
Q psy4671 9 NPTTVQFDHRVLGISVFSLLTAQYWMGRKLK-----------------------------LPGRANLALACVTGMAYMQV 59 (104)
Q Consensus 9 ~~~~vqf~HR~~A~l~~~~~~~l~~~~~r~~-----------------------------~~~~~r~~~~~l~~lv~~Qv 59 (104)
........|+..++......+.......+.. .+...+.....+......|+
T Consensus 48 ~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~ 127 (216)
T d1kqfc_ 48 TPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLL 127 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4456678999999887777665544333211 01122334455677888899
Q ss_pred HHHHHHHHh----hhh----HHHHHHHHHHHHHHHHHHHHHHH
Q psy4671 60 ALGITTLLT----YVP----VSIAALHQSGSLILLSMALWLSH 94 (104)
Q Consensus 60 ~lGi~tv~~----~vp----~~la~~Hq~~a~~Ll~~~~~~~~ 94 (104)
.+|+..... .+| -.....|..++.++++..+...+
T Consensus 128 ~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy 170 (216)
T d1kqfc_ 128 VTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMY 170 (216)
T ss_dssp HHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987542 222 23446999988888777766544
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=24.80 E-value=41 Score=16.68 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy4671 42 GRANLALACVTGMAYMQVAL 61 (104)
Q Consensus 42 ~~~r~~~~~l~~lv~~Qv~l 61 (104)
.+.+.........++.|+.+
T Consensus 3 ~Rv~gll~F~~~v~laQi~L 22 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLL 22 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777754
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.53 E-value=44 Score=15.88 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy4671 42 GRANLALACVTGMAYMQVAL 61 (104)
Q Consensus 42 ~~~r~~~~~l~~lv~~Qv~l 61 (104)
.+......+.....+.|+.+
T Consensus 4 ~Rv~gl~~F~~~v~laQi~l 23 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLML 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677654
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.37 E-value=1.1e+02 Score=19.75 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---cCchhHH-HHHHHHHHHHHHHHHHHHH
Q psy4671 12 TVQFDHRVLGISVFSLLTAQYWMGRKL---KLPGRAN-LALACVTGMAYMQVALGIT 64 (104)
Q Consensus 12 ~vqf~HR~~A~l~~~~~~~l~~~~~r~---~~~~~~r-~~~~~l~~lv~~Qv~lGi~ 64 (104)
.+...|+.+|...++.+..-..+..-. ++||... .....+..++.....+|..
T Consensus 78 liR~lH~~gAs~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 78 LIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhh
Confidence 577889999999999887776665421 3444433 3344566677777777754
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=15.11 E-value=1.4e+02 Score=18.79 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4671 46 LALACVTGMAYMQVALGITTL 66 (104)
Q Consensus 46 ~~~~~l~~lv~~Qv~lGi~tv 66 (104)
..-...+.++..++.+|..+-
T Consensus 124 ~~d~~~L~ll~~i~~tG~~~~ 144 (225)
T d1y5ic1 124 GADILILSLLVIQCALGLLTI 144 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334567788999999998753
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.47 E-value=2.2e+02 Score=18.61 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--c-cCchhH-HHHHHHHHHHHHHHHHHHHHHH
Q psy4671 11 TTVQFDHRVLGISVFSLLTAQYWMGRK--L-KLPGRA-NLALACVTGMAYMQVALGITTL 66 (104)
Q Consensus 11 ~~vqf~HR~~A~l~~~~~~~l~~~~~r--~-~~~~~~-r~~~~~l~~lv~~Qv~lGi~tv 66 (104)
-.++..|+.+|-..++.+.....+..- . +.++.. ...+..+..++..-..+|...-
T Consensus 76 w~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lp 135 (261)
T d3cx5c2 76 YILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCV 135 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcC
Confidence 468899999999999887776655432 1 334443 3444556667777777775443
No 8
>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2 {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=9.04 E-value=61 Score=17.73 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=12.2
Q ss_pred cccccccChHHHHHHH-HHH
Q psy4671 2 FVNKFTENPTTVQFDH-RVL 20 (104)
Q Consensus 2 ~~~n~~e~~~~vqf~H-R~~ 20 (104)
+|+||+.-=--...+| |++
T Consensus 2 ~WrNF~~kYpEsN~mhkRMl 21 (74)
T d1k1xa1 2 IWKNFFFKYPESNFMHKRML 21 (74)
T ss_dssp CGGGHHHHCHHHHHHHHHHH
T ss_pred chhhhhhcChhHHHHHHHHH
Confidence 6889885444556677 443
No 9
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=8.97 E-value=2.1e+02 Score=17.26 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4671 41 PGRANLALACVTGMAYMQVALGITTLL---------TYVPVSIAALHQSGSLILLSMALWL 92 (104)
Q Consensus 41 ~~~~r~~~~~l~~lv~~Qv~lGi~tv~---------~~vp~~la~~Hq~~a~~Ll~~~~~~ 92 (104)
+...|-.=+..+++++..+.+|..... .+.....-..|...+..++...+..
T Consensus 10 ~~~~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~ 70 (216)
T d1kqfc_ 10 KFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 70 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667788888888876543 1223344567887666655555544
No 10
>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.89 E-value=1.5e+02 Score=15.26 Aligned_cols=8 Identities=38% Similarity=0.467 Sum_probs=4.2
Q ss_pred hhhHHHHH
Q psy4671 69 YVPVSIAA 76 (104)
Q Consensus 69 ~vp~~la~ 76 (104)
.+|+|+|+
T Consensus 43 ~VPLWlAl 50 (61)
T d2e9xb2 43 EVPLWLAI 50 (61)
T ss_dssp EEEHHHHH
T ss_pred ccHHHHHH
Confidence 35555554
Done!