RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4671
         (104 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.41
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 25  FSLLTAQY----WMGRKLKLPGRANLALACVTGM--------AYMQVALG-----ITTLL 67
            +L    +    ++ +K++    A  A   +            Y+          +  +L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 68  TYVPVSIAALHQSGSLILLSMAL 90
            ++P     L  S    LL +AL
Sbjct: 550 DFLPKIEENLICSKYTDLLRIAL 572


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 2.3
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 12  TVQFDHRVLGISVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYMQVAL--GITTLLTY 69
            V F+ + + I V+          R L       +    +      +       T +L +
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504

Query: 70  VPVSIAALHQSGSLI 84
            P   + L   G L 
Sbjct: 505 GPGGASGL---GVLT 516



 Score = 25.4 bits (55), Expect = 4.6
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 18/65 (27%)

Query: 7    TENPTTVQFDH--RVLGISVFS---LLTAQYWMGRKLK----LPGRANL---------AL 48
             E+ T+  F     +L  + F+   L   +      LK    +P  A           AL
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770

Query: 49   ACVTG 53
            A +  
Sbjct: 1771 ASLAD 1775


>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase);
          2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
          Length = 289

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 44 ANLALACVTGMAYMQVALGITTLLTYVPVSIAALHQSGSLILLSM 88
          AN+         ++     +  LLT     +  L   G  ++LS+
Sbjct: 47 ANINYDAANDKVFVSNNPNVQHLLTNRAKYLKPLQDKGIKVILSI 91


>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
           transport protei; HET: LMT; 2.60A {Gloeobacter
           violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
           3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
           3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
           ...
          Length = 321

 Score = 24.9 bits (55), Expect = 6.5
 Identities = 4/10 (40%), Positives = 7/10 (70%)

Query: 59  VALGITTLLT 68
           V L ++TL+ 
Sbjct: 229 VTLVVSTLIA 238


>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
           membrane, transport protein; HET: ACH MES; 2.91A
           {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
           2vl0_A 2yks_A
          Length = 322

 Score = 24.6 bits (54), Expect = 8.0
 Identities = 3/10 (30%), Positives = 5/10 (50%)

Query: 59  VALGITTLLT 68
           +    T +LT
Sbjct: 232 LQTSFTLMLT 241


>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
           kinase, MLK family, MLK1 and MLK3 subtype selective
           inhibitors; HET: VIN; 2.60A {Homo sapiens}
          Length = 271

 Score = 24.5 bits (54), Expect = 8.8
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 23  SVFSLLTAQYWMGRKLKLPGRANLALACVTGMAYM 57
            +  +L+     G+++      N A+    GM Y+
Sbjct: 92  PLNRVLS-----GKRIPPDILVNWAVQIARGMNYL 121


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,505,941
Number of extensions: 74596
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 16
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)