BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4672
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
           From Deinococcus Radiodurans
          Length = 254

 Score = 31.6 bits (70), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 45  LPMDRILVESDAPFLYPNARAAKLPIHVRHLV 76
           +P DR+L E+D PFL  + +AA LP  V+ +V
Sbjct: 186 MPRDRVLTETDGPFLELDGQAA-LPWDVKSVV 216


>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
           Hydrolase From Pseudomonas Putida
          Length = 287

 Score = 31.2 bits (69), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 24  SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 67
           +G+IC +     L  ++  G +P  R+ +ESDAP+L P +   K
Sbjct: 180 TGWICDERRGTHLHPLV--GNIPEGRLXLESDAPYLLPRSLRPK 221


>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
           Coli K12, At 1.9 A Resolution
 pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
           Coli K12, At 1.9 A Resolution
          Length = 265

 Score = 31.2 bits (69), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 16/17 (94%)

Query: 45  LPMDRILVESDAPFLYP 61
           +P+DR+LVE+D+P+L P
Sbjct: 195 VPLDRLLVETDSPYLAP 211


>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
           Escherichia Coli K12 At 2.0 A Resolution
          Length = 264

 Score = 31.2 bits (69), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 24  SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK------LPIHVRHLV 76
           +G++C +     L+ +L    +P +++L+E+DAP+L P     K       P H+ H++
Sbjct: 178 TGWVCDERRGLELRELLPL--IPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHIL 234


>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
           From Staphylococcus Aureus. Northeast Structural
           Genomics Consortium Target Zr237.
 pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
           From Staphylococcus Aureus. Northeast Structural
           Genomics Consortium Target Zr237
          Length = 265

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 48  DRILVESDAPFLYPNARAAK 67
           +R+LVE+DAP+L P+    K
Sbjct: 197 ERLLVETDAPYLSPHPYRGK 216


>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
           Complex
 pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
           Complex
 pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
           The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
           Metallo-Beta- Lactamases
 pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
           The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
           Metallo-Beta- Lactamases
          Length = 233

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 36  LQGMLESGELPMDRILVESDAP 57
           L+G++E GEL +D I+   D P
Sbjct: 193 LKGLIEQGELKVDSIIAGHDTP 214


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,099,372
Number of Sequences: 62578
Number of extensions: 66825
Number of successful extensions: 90
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)