BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy4672
MHRSSIPMLEPLNKALLILILCWSGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLY
PNARAAKLPIHVRHLVML

High Scoring Gene Products

Symbol, full name Information P value
CG3308 protein from Drosophila melanogaster 2.8e-14
crn-2 gene from Caenorhabditis elegans 4.0e-08

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy4672
        (78 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0038877 - symbol:CG3308 species:7227 "Drosophila m...   186  2.8e-14   1
WB|WBGene00000795 - symbol:crn-2 species:6239 "Caenorhabd...   130  4.0e-08   1


>FB|FBgn0038877 [details] [associations]
            symbol:CG3308 species:7227 "Drosophila melanogaster"
            [GO:0004536 "deoxyribonuclease activity" evidence=ISS] [GO:0016888
            "endodeoxyribonuclease activity, producing 5'-phosphomonoesters"
            evidence=IEA] InterPro:IPR001130 Pfam:PF01026 PIRSF:PIRSF005902
            GO:GO:0016888 HOGENOM:HOG000040440 eggNOG:COG0084 PANTHER:PTHR10060
            HSSP:Q9WZD5 EMBL:AY060255 ProteinModelPortal:Q95TA7 SMR:Q95TA7
            STRING:Q95TA7 PRIDE:Q95TA7 FlyBase:FBgn0038877 InParanoid:Q95TA7
            OrthoDB:EOG42NGG3 ChiTaRS:CG3308 ArrayExpress:Q95TA7 Bgee:Q95TA7
            Uniprot:Q95TA7
        Length = 319

 Score = 186 (70.5 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 31/50 (62%), Positives = 43/50 (86%)

Query:    24 SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAKLPIHVR 73
             +GY+CKD S+ G++ +LE G LP+DR+LVE+DAPF+YPN RA+KLP HV+
Sbjct:   212 TGYLCKDKSDTGVRRLLEDGTLPLDRLLVETDAPFMYPNTRASKLPQHVK 261


>WB|WBGene00000795 [details] [associations]
            symbol:crn-2 species:6239 "Caenorhabditis elegans"
            [GO:0016888 "endodeoxyribonuclease activity, producing
            5'-phosphomonoesters" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=IGI;IDA] [GO:0043277 "apoptotic cell clearance"
            evidence=IMP] [GO:0004536 "deoxyribonuclease activity"
            evidence=IDA] InterPro:IPR001130 InterPro:IPR018228 Pfam:PF01026
            PIRSF:PIRSF005902 PROSITE:PS01090 GO:GO:0006309 GO:GO:0016888
            GO:GO:0004536 GO:GO:0043277 EMBL:FO080609 PANTHER:PTHR10060
            GeneTree:ENSGT00690000102174 KO:K03424 EMBL:AY303576 PIR:T32529
            RefSeq:NP_504476.1 UniGene:Cel.4338 HSSP:Q9WZD5
            ProteinModelPortal:G5EG18 SMR:G5EG18 EnsemblMetazoa:CD4.2
            GeneID:178945 KEGG:cel:CELE_CD4.2 CTD:178945 WormBase:CD4.2
            OMA:NEPCYLP NextBio:903236 Uniprot:G5EG18
        Length = 286

 Score = 130 (50.8 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 20/53 (37%), Positives = 39/53 (73%)

Query:    24 SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAKLPIHVRHLV 76
             +G++ KD S+ G+Q  L SGE+P++++++E+DAP++YP     K+P  ++ L+
Sbjct:   180 TGFLWKDRSDNGVQAGLRSGEIPIEKLVLETDAPYMYPKINDKKIPKEIKSLI 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.36    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  7.97u 0.07s 8.04t   Elapsed:  00:00:40
  Total cpu time:  7.97u 0.07s 8.04t   Elapsed:  00:00:43
  Start:  Thu Aug 15 13:48:57 2013   End:  Thu Aug 15 13:49:40 2013

Back to top