RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4672
(78 letters)
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 42.1 bits (100), Expect = 2e-06
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 24 SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAKL------PIHVRH 74
+G++C + L+ +L +P +++L+E+DAP+L P K P H+ H
Sbjct: 178 TGWVCDERRGLELRELLP--LIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPH 232
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 41.0 bits (97), Expect = 6e-06
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 24 SGYICKDSSEAGLQGMLESGELPMDRILVESDAPFLYP 61
+G+IC + L ++ +P R+++ESDAP+L P
Sbjct: 180 TGWICDERRGTHLHPLVG--NIPEGRLMLESDAPYLLP 215
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 38.8 bits (91), Expect = 3e-05
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 24 SGYICKDSSEAGLQGMLES-GELPMDRILVESDAPFLYPNARAAK 67
+G K + LE +P +++++E+DAP+ + A
Sbjct: 193 NGCSLKTEAN------LEVLKSIPSEKLMIETDAPWCGVKSTHAG 231
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 37.4 bits (86), Expect = 1e-04
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 44 ELPMDRILVESDAPFLYPNARAAKLP 69
++P +R+L+E+DAP+ A
Sbjct: 292 QIPTERLLLETDAPWCEIKRTHASFQ 317
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 44 ELPMDRILVESDAPFLYP 61
+P+DR+LVE+D+P+L P
Sbjct: 194 YVPLDRLLVETDSPYLAP 211
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 44 ELPMDRILVESDAPFLYP 61
+P DR+L E+D PFL
Sbjct: 185 SMPRDRVLTETDGPFLEL 202
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 35.9 bits (84), Expect = 3e-04
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 44 ELPMDRILVESDAPFLYP 61
+ M+R+LVE+DAP+L P
Sbjct: 193 HVSMERLLVETDAPYLSP 210
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 36.0 bits (84), Expect = 3e-04
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 44 ELPMDRILVESDAPFLYPN 62
+LP+ I +E+D+P L P
Sbjct: 205 QLPLTSICLETDSPALGPE 223
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 35.9 bits (84), Expect = 3e-04
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 44 ELPMDRILVESDAPFLYP 61
+ ++ I++E+D PFL P
Sbjct: 203 RVGLEYIVLETDCPFLPP 220
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 35.8 bits (83), Expect = 4e-04
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 44 ELPMDRILVESDAPFLYP 61
++P++R+ +E+D P+
Sbjct: 236 QIPIERLHIETDCPYCGI 253
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 35.2 bits (82), Expect = 7e-04
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 44 ELPMDRILVESDAPFLYP 61
+LP+ +L+E+DAP +
Sbjct: 196 KLPLASLLLETDAPDMPL 213
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 33.5 bits (77), Expect = 0.002
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 44 ELPMDRILVESDAPFLYPNARAAKLPIHVRHLV 76
E +R ++ SDA + V
Sbjct: 196 EHGPERFMLNSDAGYRDVE------ITTVAEAA 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.047
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 24/95 (25%)
Query: 8 MLEPLNKALLILILCWSGYI-------CK------DSSEAGLQGMLESGELPMDRILV-- 52
+P LL+L+ + CK + + +D +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 53 ---ESDAPFL-YPNARAAKLP-----IHVRHLVML 78
E + L Y + R LP + R L ++
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Score = 28.3 bits (62), Expect = 0.19
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 1 MHRSSIPMLEPLNKALLILILCWSGYICKDSSEAGLQGMLESG 43
+ S + L +ALL L + + + G+L SG
Sbjct: 129 YNVSRLQPYLKLRQALLEL---------RPAKNVLIDGVLGSG 162
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Length = 357
Score = 25.5 bits (56), Expect = 1.6
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPFLYPNARAA 66
++ + + E+ +DRIL +D P++ P
Sbjct: 295 TKPQFDLVKK--EVGIDRILYAADYPYIEPEKLGV 327
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 25.5 bits (56), Expect = 1.9
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 26 YICKDSSEAGLQGMLESGELPMDRILVESDAPF 58
+ L+ ++ + DR+++ SD PF
Sbjct: 267 VDSAVFNPGALELLVS--VMGEDRVMLGSDYPF 297
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 25.1 bits (55), Expect = 2.6
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPF 58
L+ + + + D++++ +D PF
Sbjct: 270 DPLSLKLLTD--VIGKDKVILGTDYPF 294
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 25.1 bits (55), Expect = 2.9
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPF 58
L + E+ DRIL +D PF
Sbjct: 266 RTQTLIDAIL--EIGADRILFSTDWPF 290
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN;
2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Length = 307
Score = 24.7 bits (54), Expect = 4.2
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPFLYP 61
L ++ + +L SD P+
Sbjct: 245 LPRQLPTLMS--LAQPEHLLYGSDIPYTPL 272
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
2.00A {Lactobacillus acidophilus}
Length = 312
Score = 24.3 bits (53), Expect = 5.2
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPFLYPNARAAKLPIHV 72
+ LQ ++ +D +L +DAPF + A ++
Sbjct: 242 NTPALQLAID--YYGIDHVLFGTDAPFAVMPSGADQIITQA 280
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 23.8 bits (51), Expect = 8.3
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 32 SEAGLQGMLESGELPMDRILVESDAPF 58
+ G+ + +P+D +L S+
Sbjct: 263 HQPGIDLLNT--VIPVDNVLFASEMIG 287
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 23.7 bits (51), Expect = 9.2
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 26 YICKDSSEAGLQGMLESGELPMDRILVESD 55
+ K++ + G G++ L RIL+ D
Sbjct: 104 FNRKEAKDHGEGGIIVGSALENKRILIIDD 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,115,372
Number of extensions: 50751
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 22
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.3 bits)