RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4672
         (78 letters)



>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 30.3 bits (67), Expect = 0.013
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 44  ELPMDRILVESDAPFLYP 61
              ++R+++  D      
Sbjct: 231 RGLLNRVMLSMDITRRSH 248


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
           {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 26.9 bits (58), Expect = 0.22
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 44  ELPMDRILVESDAPFLYPNARAAKL--PIHVRHLV 76
            +P+DR+LVE+D+P+L P     K   P  VR + 
Sbjct: 194 YVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVA 228


>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
           {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 25.7 bits (55), Expect = 0.62
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 44  ELPMDRILVESDAPFLYPNARAAKL------PIHVRHLV 76
            +P +++L+E+DAP+L P     K       P H+ H++
Sbjct: 192 LIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHIL 230


>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 25.3 bits (54), Expect = 0.89
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 44  ELPMDRILVESDAPFLYPNARAAKL--PIHVRHLV 76
            + ++ I++E+D PFL P     K   P +++++V
Sbjct: 195 RVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVV 229


>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
           {Pseudomonas diminuta [TaxId: 293]}
          Length = 331

 Score = 24.7 bits (52), Expect = 1.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 44  ELPMDRILVESDAPFLYP 61
           +  M +ILV +D  F + 
Sbjct: 256 QGYMKQILVSNDWLFGFS 273


>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
           {Escherichia coli [TaxId: 562]}
          Length = 259

 Score = 23.1 bits (48), Expect = 5.3
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 44  ELPMDRILVESDAPFLYPNARAAKL--PIHVRHLV 76
           +LP+  +L+E+DAP +  N    +   P     + 
Sbjct: 196 KLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVF 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,356
Number of extensions: 8887
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 10
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)