BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4673
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR---IYPGMVY 81
LID+G NLTN F ++V+RA ++GV + + G+SL S++AL L + ++
Sbjct: 3 LIDIGVNLTNSSFHDQQAAIVERALEAGVTQXLLTGTSLAVSEQALELCQQLDASGAHLF 62
Query: 82 STAGIHPHEAKSWDEDYIDQLRDLVSNT 109
+TAG+HPH+AK+WD D QLR L+S
Sbjct: 63 ATAGVHPHDAKAWDTDSERQLRLLLSEP 90
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
Y + D+G NLT+ +F +D + VV A D+GV ++ G++L+ S++A +LAR Y +
Sbjct: 2 EYRMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQY-SSCW 60
Query: 82 STAGIHPHEAKSW 94
STAG+HPH++ W
Sbjct: 61 STAGVHPHDSSQW 73
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 25 LIDVGANLTNRKF----------GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
ID+G NLT+ F DL+ V+ RA + GV+K + G +L+ SK+AL LA+
Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62
Query: 75 IYPGMVYSTAGIHPHEAKSWDED----YIDQLRDLVSN 108
GM +ST G HP ++++ Y+ +L +L N
Sbjct: 63 TN-GMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAEN 99
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG 85
+D A+L +F D +V+ +++ ++ ++ +G +L+ SK++L L++ ++ + G
Sbjct: 14 VDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTS-DRIFCSVG 72
Query: 86 IHPHEAKSWDEDYIDQLRDLVSN 108
+HPH+AK ED+I+ L +
Sbjct: 73 VHPHDAKEVPEDFIEHLEKFAKD 95
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
LID +L + ++ DL V+ RA+++GV + +G + + + A +L Y +Y
Sbjct: 2 LIDTHVHLNDEQYDDDLSEVITRAREAGVDRXFVVGFNKSTIERAXKLIDEY-DFLYGII 60
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSNT 109
G HP +A + E++++ + L +
Sbjct: 61 GWHPVDAIDFTEEHLEWIESLAQHP 85
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
ID + F D E+ +QRA +GV KII + ++ L LA Y + Y+
Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPL-YAAL 63
Query: 85 GIHPHEAKSWDEDYIDQLR 103
G+HP + + ++QL+
Sbjct: 64 GLHPGMLEKHSDVSLEQLQ 82
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 27 DVGANLTNRKF-----GR-----DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR-- 74
D+G NLT+ F G+ D +++RA V+ + GSS+ S+ A+ L
Sbjct: 16 DIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSV 75
Query: 75 --IYPGMVYSTAGIHP 88
+ P +Y T G+HP
Sbjct: 76 KDLSPLKLYHTIGVHP 91
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
L+D +L+ F RDL+ V+++AK + V ++A+ ++ ++L+ Y G V
Sbjct: 6 LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCL 65
Query: 85 GIHPHEAKSWDEDYIDQLRDL 105
G+HP + ++ L+DL
Sbjct: 66 GVHPVQGLPPEDQRSVTLKDL 86
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.47, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVH 161
+C C K+F +K HLNRH +H
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIH 35
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVHKD 163
+CE C + F+R+EHL RH H +
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTN 27
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 135 VDITALCEFCQKNFSRKEHLNRHL-WVHKDSS 165
V +C+ C K FSR +HLN H+ VH S
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVHKD 163
+CE C + F+R+EHL RH H +
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTN 27
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.0 bits (66), Expect = 0.74, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 140 LCEFCQKNFSRKEHLNRHL 158
+C+ C K FSR +HLN H+
Sbjct: 14 ICQSCGKGFSRPDHLNGHI 32
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 52 CRICMRNFSRSDHLTTHIRTH 72
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH 26
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSM 166
C C K F HLN+HL VH ++
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETL 40
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C K+FSR +HL+RH H++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQN 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVHKD 163
+CE C + F+R+E+L RH H +
Sbjct: 4 VCEVCTRAFARQEYLKRHYRSHTN 27
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 36 CRICMRNFSRSDHLTTHIRTH 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K FSRK+ L H+ H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH 31
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F + LNRH VH
Sbjct: 15 CDICGKSFCGRSRLNRHSMVH 35
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSMMK 168
C+ C K F R++HL H ++H K
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFK 75
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHK 162
C C K F R +HL++H+ +H+
Sbjct: 5 CPECPKRFMRSDHLSKHITLHE 26
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ CQ+ FSR +HL H H
Sbjct: 5 CKTCQRKFSRSDHLKTHTRTH 25
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVHKD 163
+CE C + F+R+E L RH H +
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTN 27
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K FS+ HL H VH
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVH 35
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R+ HL HL +H
Sbjct: 15 CNECGKGFGRRSHLAGHLRLH 35
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F++ HL+ H VH
Sbjct: 15 CEECGKRFTQNSHLHSHQRVH 35
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C K F R +HL++H+ H++
Sbjct: 5 CPECPKRFMRSDHLSKHIKTHQN 27
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C+++F K L+RH VHK+
Sbjct: 4 CGLCERSFVEKSALSRHQRVHKN 26
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 6.8, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R HLN H +H
Sbjct: 15 CSECGKAFHRHTHLNEHRRIH 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C KNF R HL HL H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRH 35
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C K F R +HL H+ +H++
Sbjct: 5 CPECPKRFMRSDHLTLHILLHEN 27
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 8.7, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C + F+ K HLN+H +H
Sbjct: 15 CHECGRGFTLKSHLNQHQRIH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS HL++H +H
Sbjct: 15 CNECGKTFSHSAHLSKHQLIH 35
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDS 164
C+ C K+F R L+ HL +H D+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDT 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,557,514
Number of Sequences: 62578
Number of extensions: 162201
Number of successful extensions: 715
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 88
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)