Query psy4673
Match_columns 171
No_of_seqs 215 out of 1161
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 100.0 9E-39 2E-43 257.3 15.3 147 23-170 1-164 (256)
2 PRK10425 DNase TatD; Provision 100.0 1.3E-37 2.8E-42 251.8 14.4 145 25-170 1-161 (258)
3 PRK10812 putative DNAse; Provi 100.0 6E-37 1.3E-41 248.8 15.1 145 23-170 1-164 (265)
4 PRK11449 putative deoxyribonuc 100.0 1.4E-36 3.1E-41 245.7 15.6 148 22-170 2-166 (258)
5 PF01026 TatD_DNase: TatD rela 100.0 8E-34 1.7E-38 229.0 10.8 145 26-170 1-164 (255)
6 KOG3020|consensus 100.0 5.6E-28 1.2E-32 196.7 12.3 152 19-170 12-189 (296)
7 TIGR00010 hydrolase, TatD fami 99.9 8.2E-25 1.8E-29 174.3 15.1 144 25-169 1-159 (252)
8 cd01310 TatD_DNAse TatD like p 99.9 4.9E-24 1.1E-28 169.6 14.9 144 25-169 1-159 (251)
9 COG1099 Predicted metal-depend 99.8 5.1E-20 1.1E-24 143.6 9.2 128 24-170 1-142 (254)
10 cd00530 PTE Phosphotriesterase 99.4 5.6E-13 1.2E-17 109.0 10.0 125 41-169 34-193 (293)
11 COG1831 Predicted metal-depend 99.1 2.7E-10 5.7E-15 91.5 9.2 134 21-169 3-172 (285)
12 TIGR03583 EF_0837 probable ami 99.1 1.4E-10 3E-15 97.9 7.2 139 24-167 51-213 (365)
13 cd01295 AdeC Adenine deaminase 99.1 2E-09 4.4E-14 92.7 12.1 121 24-166 10-145 (422)
14 cd01292 metallo-dependent_hydr 98.4 1.8E-06 3.8E-11 68.0 9.1 120 25-147 1-156 (275)
15 cd01311 PDC_hydrolase 2-pyrone 98.4 7E-06 1.5E-10 66.4 11.9 116 25-165 2-133 (263)
16 PF04909 Amidohydro_2: Amidohy 97.9 0.0001 2.2E-09 58.6 8.6 113 26-162 1-137 (273)
17 cd01294 DHOase Dihydroorotase 97.6 0.0013 2.9E-08 54.9 11.5 83 24-115 5-95 (335)
18 cd01307 Met_dep_hydrolase_B Me 97.5 0.00046 9.9E-09 57.7 7.9 138 24-167 35-197 (338)
19 PRK09875 putative hydrolase; P 97.5 0.0033 7.1E-08 52.0 12.3 130 20-165 3-162 (292)
20 PRK09237 dihydroorotase; Provi 97.2 0.0027 5.8E-08 53.9 9.1 139 24-167 54-216 (380)
21 cd01317 DHOase_IIa Dihydroorot 97.0 0.023 4.9E-07 48.2 13.1 119 24-164 15-142 (374)
22 cd00375 Urease_alpha Urease al 97.0 0.0073 1.6E-07 54.1 10.3 93 24-139 130-238 (567)
23 TIGR01178 ade adenine deaminas 96.9 0.011 2.3E-07 53.1 10.7 90 24-115 51-149 (552)
24 PRK12394 putative metallo-depe 96.9 0.012 2.6E-07 50.0 10.6 139 24-166 57-220 (379)
25 PLN02795 allantoinase 96.7 0.016 3.5E-07 51.4 10.4 124 24-166 100-236 (505)
26 PRK07369 dihydroorotase; Provi 96.6 0.063 1.4E-06 46.5 12.6 120 24-166 58-186 (418)
27 cd01299 Met_dep_hydrolase_A Me 96.5 0.022 4.8E-07 47.2 9.4 42 24-65 14-68 (342)
28 PRK13308 ureC urease subunit a 96.5 0.026 5.6E-07 50.6 9.8 106 24-165 134-251 (569)
29 PRK09059 dihydroorotase; Valid 96.5 0.075 1.6E-06 46.1 12.5 121 24-166 61-190 (429)
30 TIGR00857 pyrC_multi dihydroor 96.3 0.055 1.2E-06 46.5 10.8 120 24-165 40-170 (411)
31 PRK13207 ureC urease subunit a 96.3 0.045 9.8E-07 49.2 10.3 100 24-146 130-250 (568)
32 COG3618 Predicted metal-depend 96.3 0.045 9.7E-07 44.9 9.4 89 21-115 5-110 (279)
33 cd01293 Bact_CD Bacterial cyto 96.2 0.13 2.7E-06 43.3 12.1 98 45-147 102-212 (398)
34 PRK05985 cytosine deaminase; P 96.0 0.22 4.8E-06 42.4 13.0 92 45-140 104-202 (391)
35 PRK07583 cytosine deaminase-li 96.0 0.09 2E-06 45.6 10.8 93 44-146 127-234 (438)
36 PRK10027 cryptic adenine deami 96.0 0.042 9.2E-07 49.7 8.9 94 24-119 85-191 (588)
37 PRK02382 dihydroorotase; Provi 96.0 0.063 1.4E-06 46.7 9.8 118 24-165 55-184 (443)
38 PLN02942 dihydropyrimidinase 96.0 0.094 2E-06 46.2 11.0 117 24-162 58-187 (486)
39 cd01297 D-aminoacylase D-amino 96.0 0.098 2.1E-06 45.0 10.7 33 24-59 54-86 (415)
40 PRK13985 ureB urease subunit b 95.9 0.049 1.1E-06 48.9 8.7 109 24-166 130-252 (568)
41 PRK09357 pyrC dihydroorotase; 95.9 0.3 6.5E-06 41.9 13.4 120 24-165 54-182 (423)
42 TIGR01792 urease_alph urease, 95.9 0.06 1.3E-06 48.4 9.2 106 24-165 129-250 (567)
43 PRK09061 D-glutamate deacylase 95.8 0.17 3.7E-06 44.9 11.8 46 96-146 165-221 (509)
44 PRK13206 ureC urease subunit a 95.8 0.078 1.7E-06 47.7 9.5 109 24-166 136-258 (573)
45 PRK07627 dihydroorotase; Provi 95.8 0.2 4.4E-06 43.4 11.9 121 24-165 56-184 (425)
46 PRK13404 dihydropyrimidinase; 95.7 0.36 7.9E-06 42.5 13.2 123 24-165 55-189 (477)
47 cd01302 Cyclic_amidohydrolases 95.7 0.2 4.3E-06 42.0 11.1 37 24-60 6-45 (337)
48 PRK13309 ureC urease subunit a 95.6 0.08 1.7E-06 47.7 8.8 107 24-166 134-256 (572)
49 TIGR02967 guan_deamin guanine 95.6 0.57 1.2E-05 39.9 13.7 37 46-82 97-134 (401)
50 cd01298 ATZ_TRZ_like TRZ/ATZ f 95.4 0.28 6.1E-06 41.4 11.3 11 24-34 57-67 (411)
51 cd01315 L-HYD_ALN L-Hydantoina 95.4 0.27 5.8E-06 42.5 11.4 37 24-60 53-91 (447)
52 PRK08392 hypothetical protein; 95.2 0.48 1E-05 37.2 11.1 113 26-140 1-148 (215)
53 cd01314 D-HYD D-hydantoinases 95.2 0.22 4.9E-06 43.0 10.0 120 24-162 52-182 (447)
54 PRK08323 phenylhydantoinase; V 95.1 0.28 6.1E-06 42.5 10.4 121 24-163 50-181 (459)
55 TIGR00221 nagA N-acetylglucosa 94.9 0.31 6.7E-06 41.8 9.9 141 24-169 57-226 (380)
56 TIGR00856 pyrC_dimer dihydroor 94.9 0.53 1.2E-05 39.7 11.2 81 26-115 8-97 (341)
57 PLN02599 dihydroorotase 94.9 0.55 1.2E-05 40.1 11.4 97 4-115 11-118 (364)
58 PRK08417 dihydroorotase; Provi 94.6 0.49 1.1E-05 40.4 10.5 116 24-165 31-153 (386)
59 TIGR02033 D-hydantoinase D-hyd 94.6 0.6 1.3E-05 40.3 11.1 121 24-162 52-183 (454)
60 PF02126 PTE: Phosphotriestera 94.6 0.23 5E-06 41.5 8.2 131 20-166 3-166 (308)
61 PRK10657 isoaspartyl dipeptida 94.4 0.21 4.5E-06 42.3 7.7 37 24-60 57-98 (388)
62 COG2159 Predicted metal-depend 94.4 0.35 7.5E-06 40.0 8.8 98 45-166 55-168 (293)
63 PLN02303 urease 94.3 0.15 3.2E-06 47.7 7.0 107 24-164 399-519 (837)
64 PRK09060 dihydroorotase; Valid 94.3 0.81 1.8E-05 39.8 11.3 37 24-60 57-95 (444)
65 PRK08123 histidinol-phosphatas 93.9 0.27 5.9E-06 40.0 7.2 36 23-58 1-38 (270)
66 PRK09228 guanine deaminase; Pr 93.9 2.3 4.9E-05 36.9 13.3 41 47-87 123-164 (433)
67 PRK08203 hydroxydechloroatrazi 93.8 2.8 6E-05 36.4 13.6 11 24-34 60-70 (451)
68 PRK06846 putative deaminase; V 93.6 2.3 4.9E-05 36.5 12.7 11 24-34 68-78 (410)
69 PRK07328 histidinol-phosphatas 93.5 0.44 9.5E-06 38.7 7.8 35 23-57 1-36 (269)
70 PRK06189 allantoinase; Provisi 93.5 0.94 2E-05 39.4 10.3 52 24-75 55-115 (451)
71 TIGR03178 allantoinase allanto 93.5 1 2.2E-05 39.1 10.4 37 24-60 52-90 (443)
72 PRK05451 dihydroorotase; Provi 93.4 2.3 5.1E-05 35.8 12.2 75 24-107 9-92 (345)
73 PF03808 Glyco_tran_WecB: Glyc 93.1 1.4 3E-05 33.4 9.5 69 41-115 37-108 (172)
74 PRK08044 allantoinase; Provisi 93.0 1.3 2.8E-05 38.6 10.4 52 24-75 54-114 (449)
75 COG1001 AdeC Adenine deaminase 92.8 1 2.2E-05 40.7 9.4 87 24-118 78-182 (584)
76 smart00481 POLIIIAc DNA polyme 92.7 1 2.2E-05 28.4 7.1 51 27-77 1-54 (67)
77 TIGR01975 isoAsp_dipep isoaspa 92.4 1.6 3.4E-05 37.6 9.9 38 23-60 56-98 (389)
78 cd06533 Glyco_transf_WecG_TagA 92.3 1.7 3.7E-05 32.9 9.1 48 41-91 35-84 (171)
79 PRK08393 N-ethylammeline chlor 92.2 3.9 8.4E-05 35.2 12.3 39 47-88 107-145 (424)
80 TIGR00696 wecB_tagA_cpsF bacte 92.0 1.4 3.1E-05 33.7 8.3 48 41-91 37-85 (177)
81 PRK06886 hypothetical protein; 91.9 2.3 5E-05 35.8 10.1 93 44-140 74-173 (329)
82 cd01303 GDEase Guanine deamina 91.8 7.8 0.00017 33.5 14.1 41 46-86 118-159 (429)
83 PRK00912 ribonuclease P protei 91.7 0.29 6.2E-06 39.0 4.3 35 23-58 1-35 (237)
84 PRK03892 ribonuclease P protei 91.7 4.9 0.00011 31.8 10.9 105 48-170 55-181 (216)
85 PRK06380 metal-dependent hydro 91.7 7.8 0.00017 33.2 13.4 12 24-35 55-66 (418)
86 cd01312 Met_dep_hydrolase_D Me 91.6 2.8 6.2E-05 35.7 10.5 27 125-164 159-185 (381)
87 PRK07228 N-ethylammeline chlor 91.5 7 0.00015 33.7 13.1 11 24-34 57-67 (445)
88 PF02811 PHP: PHP domain; Int 91.4 1.1 2.3E-05 33.0 7.0 50 26-76 1-54 (175)
89 PRK07572 cytosine deaminase; V 91.4 5.9 0.00013 34.2 12.4 11 24-34 52-62 (426)
90 cd01316 CAD_DHOase The eukaryo 91.3 1.4 3.1E-05 37.2 8.3 61 24-87 7-75 (344)
91 PRK07709 fructose-bisphosphate 91.3 7.5 0.00016 32.1 12.4 118 27-169 79-217 (285)
92 PRK08610 fructose-bisphosphate 91.1 5.8 0.00013 32.8 11.5 117 28-169 80-217 (286)
93 PRK05588 histidinol-phosphatas 91.1 2.4 5.1E-05 34.0 9.2 31 25-55 1-32 (255)
94 PRK07203 putative chlorohydrol 91.0 4.7 0.0001 34.9 11.5 10 24-33 60-69 (442)
95 PRK06038 N-ethylammeline chlor 91.0 7.6 0.00016 33.5 12.8 11 24-34 56-66 (430)
96 COG4464 CapC Capsular polysacc 91.0 0.19 4.2E-06 39.9 2.6 37 25-61 1-42 (254)
97 PRK12738 kbaY tagatose-bisphos 90.7 5.9 0.00013 32.8 11.2 118 27-169 76-216 (286)
98 cd01318 DHOase_IIb Dihydroorot 90.4 2 4.3E-05 36.4 8.5 52 24-75 7-66 (361)
99 PRK09248 putative hydrolase; V 90.3 1.9 4E-05 34.4 7.8 35 24-58 3-38 (246)
100 TIGR00677 fadh2_euk methylenet 90.2 4.9 0.00011 33.0 10.4 105 27-139 61-184 (281)
101 PRK08204 hypothetical protein; 89.7 12 0.00027 32.2 13.3 41 130-170 202-259 (449)
102 cd01305 archeal_chlorohydrolas 89.7 1.4 3.1E-05 35.2 6.7 39 47-85 60-99 (263)
103 PRK11170 nagA N-acetylglucosam 89.6 9.9 0.00021 32.6 12.2 137 24-169 54-224 (382)
104 COG1735 Php Predicted metal-de 89.4 8.4 0.00018 32.2 11.0 132 19-166 12-176 (316)
105 TIGR01858 tag_bisphos_ald clas 89.4 7.8 0.00017 32.0 10.9 119 27-169 74-214 (282)
106 COG3964 Predicted amidohydrola 89.3 1.2 2.6E-05 37.4 5.9 135 23-167 57-220 (386)
107 COG0044 PyrC Dihydroorotase an 88.8 13 0.00028 32.5 12.5 119 24-165 54-181 (430)
108 PRK09045 N-ethylammeline chlor 88.7 10 0.00023 32.7 11.8 11 24-34 67-77 (443)
109 PRK06687 chlorohydrolase; Vali 88.4 11 0.00025 32.2 11.8 12 24-35 59-70 (419)
110 cd00947 TBP_aldolase_IIB Tagat 88.2 13 0.00029 30.5 11.6 120 26-169 70-210 (276)
111 PRK09432 metF 5,10-methylenete 87.9 4.5 9.7E-05 33.5 8.7 105 26-139 83-199 (296)
112 PRK02925 glucuronate isomerase 87.7 0.35 7.6E-06 42.5 2.1 56 20-77 23-92 (466)
113 PRK08185 hypothetical protein; 87.6 11 0.00025 31.0 10.8 123 27-169 70-212 (283)
114 PRK09195 gatY tagatose-bisphos 87.5 12 0.00026 30.9 10.9 119 27-169 76-216 (284)
115 COG0613 Predicted metal-depend 87.5 0.91 2E-05 36.8 4.2 38 23-61 1-38 (258)
116 PRK04250 dihydroorotase; Provi 87.3 2.3 5E-05 36.6 6.9 52 24-75 48-107 (398)
117 PRK07213 chlorohydrolase; Prov 87.2 15 0.00032 31.1 11.7 11 24-34 51-61 (375)
118 PF02614 UxaC: Glucuronate iso 87.0 0.19 4.1E-06 44.3 -0.0 57 19-76 22-91 (462)
119 PRK13660 hypothetical protein; 87.0 12 0.00027 28.8 10.3 76 41-118 31-113 (182)
120 PRK12737 gatY tagatose-bisphos 86.7 15 0.00033 30.3 11.0 119 27-169 76-216 (284)
121 PRK07998 gatY putative fructos 86.7 17 0.00036 30.1 11.4 116 28-169 77-213 (283)
122 TIGR00676 fadh2 5,10-methylene 86.7 9.3 0.0002 31.1 9.8 104 27-139 60-180 (272)
123 TIGR00167 cbbA ketose-bisphosp 86.6 17 0.00037 30.1 11.7 119 27-169 79-220 (288)
124 TIGR01224 hutI imidazoloneprop 86.4 16 0.00034 30.6 11.4 11 24-34 41-51 (377)
125 PRK09230 cytosine deaminase; P 86.3 21 0.00046 30.9 12.5 11 24-34 56-66 (426)
126 PRK05835 fructose-bisphosphate 86.2 19 0.00041 30.2 11.4 121 26-169 75-218 (307)
127 PRK01211 dihydroorotase; Provi 86.0 2.7 5.8E-05 36.4 6.6 37 24-60 47-85 (409)
128 COG1904 UxaC Glucuronate isome 86.0 0.55 1.2E-05 40.8 2.2 59 18-77 20-91 (463)
129 PRK08609 hypothetical protein; 85.9 3.5 7.6E-05 37.3 7.5 34 25-58 335-368 (570)
130 PRK07084 fructose-bisphosphate 84.8 20 0.00043 30.3 10.9 119 27-167 87-229 (321)
131 COG0402 SsnA Cytosine deaminas 84.0 12 0.00026 32.2 9.7 43 46-88 110-153 (421)
132 PF14488 DUF4434: Domain of un 83.8 17 0.00036 27.5 10.9 51 39-89 20-90 (166)
133 COG0159 TrpA Tryptophan syntha 83.4 11 0.00024 30.8 8.7 38 39-76 109-146 (265)
134 COG0329 DapA Dihydrodipicolina 83.0 25 0.00053 29.1 10.8 102 39-162 25-137 (299)
135 COG0685 MetF 5,10-methylenetet 82.4 7.8 0.00017 32.0 7.6 66 28-93 80-157 (291)
136 PRK00369 pyrC dihydroorotase; 81.9 5.5 0.00012 34.3 6.7 37 24-60 48-86 (392)
137 PF13594 Amidohydro_5: Amidohy 81.8 1.3 2.8E-05 28.0 2.2 32 24-55 35-67 (68)
138 cd01296 Imidazolone-5PH Imidaz 81.8 29 0.00063 28.9 11.6 11 24-34 38-48 (371)
139 PRK09236 dihydroorotase; Revie 81.6 5.5 0.00012 34.6 6.7 38 24-61 55-94 (444)
140 cd00408 DHDPS-like Dihydrodipi 81.4 27 0.00057 28.2 11.5 104 40-165 19-133 (281)
141 TIGR01856 hisJ_fam histidinol 81.2 7.3 0.00016 31.2 6.9 32 26-57 1-33 (253)
142 PRK07945 hypothetical protein; 79.4 8.6 0.00019 32.4 7.0 34 24-57 96-129 (335)
143 PRK09532 DNA polymerase III su 79.1 7.6 0.00016 37.1 7.2 54 23-77 1-58 (874)
144 cd00537 MTHFR Methylenetetrahy 78.8 25 0.00054 28.4 9.4 104 27-139 60-183 (274)
145 cd00854 NagA N-acetylglucosami 78.6 4.2 9E-05 34.5 4.9 46 24-69 52-104 (374)
146 PRK13399 fructose-1,6-bisphosp 78.0 33 0.00071 29.3 10.0 34 26-63 76-109 (347)
147 PF00701 DHDPS: Dihydrodipicol 77.4 37 0.0008 27.6 11.0 100 40-163 23-135 (289)
148 PRK12857 fructose-1,6-bisphosp 76.9 41 0.00089 27.8 11.1 119 27-169 76-216 (284)
149 COG1922 WecG Teichoic acid bio 75.9 24 0.00052 28.8 8.3 47 41-90 97-144 (253)
150 TIGR01405 polC_Gram_pos DNA po 75.9 13 0.00028 36.8 7.9 60 17-77 96-159 (1213)
151 cd01308 Isoaspartyl-dipeptidas 75.5 48 0.001 27.9 14.3 37 24-60 55-96 (387)
152 PRK01060 endonuclease IV; Prov 75.2 40 0.00088 26.9 10.7 29 23-56 1-29 (281)
153 PRK06151 N-ethylammeline chlor 74.9 27 0.00059 30.7 9.1 10 24-33 58-67 (488)
154 PTZ00300 pyruvate kinase; Prov 74.6 50 0.0011 29.2 10.5 97 39-161 148-251 (454)
155 PRK07575 dihydroorotase; Provi 74.5 11 0.00023 32.8 6.4 37 24-60 57-95 (438)
156 PRK03692 putative UDP-N-acetyl 74.3 27 0.00058 28.1 8.2 46 41-90 94-140 (243)
157 PLN02591 tryptophan synthase 74.3 15 0.00032 29.8 6.8 32 40-71 94-125 (250)
158 PRK07135 dnaE DNA polymerase I 74.1 13 0.00028 36.0 7.2 54 23-77 1-58 (973)
159 COG3653 N-acyl-D-aspartate/D-g 73.9 13 0.00029 32.8 6.6 110 24-140 62-193 (579)
160 KOG4342|consensus 73.5 8 0.00017 35.7 5.4 76 64-139 308-395 (1078)
161 PRK06826 dnaE DNA polymerase I 73.3 15 0.00032 36.2 7.6 54 22-76 2-59 (1151)
162 TIGR03314 Se_ssnA putative sel 73.2 61 0.0013 28.1 11.7 11 24-34 59-69 (441)
163 PRK07374 dnaE DNA polymerase I 73.0 14 0.0003 36.5 7.3 53 23-76 1-57 (1170)
164 cd01313 Met_dep_hydrolase_E Me 72.9 60 0.0013 27.9 11.7 11 24-34 43-53 (418)
165 PRK13111 trpA tryptophan synth 72.8 15 0.00033 29.8 6.5 35 40-74 105-139 (258)
166 cd00952 CHBPH_aldolase Trans-o 71.8 56 0.0012 27.0 10.8 103 39-163 29-143 (309)
167 PRK03620 5-dehydro-4-deoxygluc 71.8 55 0.0012 26.9 11.2 103 40-165 29-142 (303)
168 PLN02540 methylenetetrahydrofo 71.4 45 0.00097 30.4 9.7 37 27-63 60-97 (565)
169 PRK00448 polC DNA polymerase I 71.1 17 0.00036 36.7 7.4 60 17-77 325-389 (1437)
170 PF01116 F_bP_aldolase: Fructo 71.0 19 0.00041 29.8 6.8 122 26-169 74-219 (287)
171 TIGR01212 radical SAM protein, 70.1 45 0.00097 27.5 8.9 50 63-115 93-144 (302)
172 TIGR02318 phosphono_phnM phosp 69.9 15 0.00032 31.4 6.1 84 24-109 49-154 (376)
173 PRK12393 amidohydrolase; Provi 69.4 77 0.0017 27.6 13.0 33 48-80 115-153 (457)
174 PF01979 Amidohydro_1: Amidohy 69.3 2.7 5.9E-05 34.1 1.5 36 24-59 5-49 (333)
175 TIGR01664 DNA-3'-Pase DNA 3'-p 69.1 46 0.00099 24.9 9.3 79 39-118 45-137 (166)
176 TIGR01430 aden_deam adenosine 68.8 65 0.0014 26.5 11.2 90 42-140 75-183 (324)
177 PRK08645 bifunctional homocyst 68.0 55 0.0012 29.9 9.7 34 30-63 386-420 (612)
178 PRK03170 dihydrodipicolinate s 67.5 66 0.0014 26.1 11.0 102 40-163 23-135 (292)
179 PRK09196 fructose-1,6-bisphosp 67.2 77 0.0017 27.0 9.8 33 26-62 76-108 (347)
180 cd00950 DHDPS Dihydrodipicolin 67.2 65 0.0014 26.0 10.9 102 40-163 22-134 (284)
181 CHL00200 trpA tryptophan synth 66.9 32 0.00069 28.1 7.2 36 40-75 107-142 (263)
182 PRK06801 hypothetical protein; 66.2 74 0.0016 26.3 11.1 48 26-77 75-128 (286)
183 cd02742 GH20_hexosaminidase Be 66.0 74 0.0016 26.2 9.5 29 39-69 72-101 (303)
184 COG0804 UreC Urea amidohydrola 65.0 38 0.00082 29.8 7.5 47 25-78 131-190 (568)
185 COG1228 HutI Imidazolonepropio 64.3 23 0.00051 30.7 6.3 17 150-166 228-244 (406)
186 KOG4549|consensus 63.9 27 0.00059 25.6 5.5 51 24-74 19-83 (144)
187 PRK15446 phosphonate metabolis 63.4 20 0.00043 30.6 5.7 83 24-108 53-158 (383)
188 cd00951 KDGDH 5-dehydro-4-deox 63.4 81 0.0018 25.7 11.0 103 40-165 22-135 (289)
189 KOG2584|consensus 63.4 40 0.00086 29.9 7.3 61 25-88 68-138 (522)
190 PRK15493 5-methylthioadenosine 62.4 1E+02 0.0022 26.6 13.0 11 24-34 60-70 (435)
191 PRK05826 pyruvate kinase; Prov 62.4 1.1E+02 0.0025 27.1 12.9 95 43-161 177-278 (465)
192 COG1387 HIS2 Histidinol phosph 62.3 78 0.0017 25.2 12.8 144 25-169 2-200 (237)
193 PRK13222 phosphoglycolate phos 62.2 67 0.0015 24.4 8.3 79 38-117 95-175 (226)
194 PRK13288 pyrophosphatase PpaX; 62.1 68 0.0015 24.4 8.5 80 37-117 83-164 (214)
195 TIGR01244 conserved hypothetic 62.0 9.8 0.00021 27.5 3.1 26 125-166 72-97 (135)
196 PRK02134 hypothetical protein; 61.9 22 0.00049 28.7 5.4 55 30-87 7-61 (249)
197 PLN02591 tryptophan synthase 61.7 33 0.00073 27.7 6.4 46 39-86 118-163 (250)
198 PRK13111 trpA tryptophan synth 61.6 31 0.00068 28.0 6.3 43 39-82 129-171 (258)
199 PLN02858 fructose-bisphosphate 61.3 1.2E+02 0.0025 30.9 11.1 121 26-169 1170-1315(1378)
200 KOG4175|consensus 60.3 47 0.001 26.4 6.7 38 40-77 111-148 (268)
201 TIGR03249 KdgD 5-dehydro-4-deo 59.9 95 0.0021 25.4 11.2 104 39-165 26-140 (296)
202 TIGR01521 FruBisAldo_II_B fruc 59.6 1.1E+02 0.0024 26.1 9.8 32 27-62 75-106 (347)
203 cd00953 KDG_aldolase KDG (2-ke 59.6 94 0.002 25.2 12.6 47 39-85 20-73 (279)
204 TIGR03239 GarL 2-dehydro-3-deo 59.6 91 0.002 25.1 9.0 95 43-139 75-200 (249)
205 TIGR00674 dapA dihydrodipicoli 59.5 94 0.002 25.2 12.3 102 40-163 20-132 (285)
206 COG1751 Uncharacterized conser 59.4 57 0.0012 24.8 6.7 65 40-104 15-81 (186)
207 PRK10128 2-keto-3-deoxy-L-rham 58.9 99 0.0021 25.3 9.4 106 43-163 81-218 (267)
208 PRK05672 dnaE2 error-prone DNA 58.7 41 0.00089 32.9 7.4 52 25-77 5-60 (1046)
209 COG0191 Fba Fructose/tagatose 58.4 1.1E+02 0.0023 25.5 11.4 119 29-169 79-218 (286)
210 COG0106 HisA Phosphoribosylfor 58.4 32 0.0007 27.8 5.7 46 43-88 88-133 (241)
211 PF06187 DUF993: Protein of un 57.7 31 0.00067 29.4 5.6 51 113-163 113-186 (382)
212 CHL00200 trpA tryptophan synth 57.6 37 0.0008 27.6 6.0 45 39-85 131-175 (263)
213 PF00290 Trp_syntA: Tryptophan 57.5 18 0.00039 29.5 4.1 34 40-73 103-136 (259)
214 COG0673 MviM Predicted dehydro 57.4 44 0.00094 27.3 6.6 60 42-109 81-143 (342)
215 PRK10558 alpha-dehydro-beta-de 56.9 67 0.0015 26.0 7.4 95 43-139 82-207 (256)
216 PRK08883 ribulose-phosphate 3- 56.4 77 0.0017 25.0 7.5 60 40-104 94-156 (220)
217 PRK13125 trpA tryptophan synth 55.6 1E+02 0.0022 24.5 9.6 53 40-95 117-169 (244)
218 COG1820 NagA N-acetylglucosami 55.3 30 0.00064 29.9 5.3 141 24-167 53-220 (380)
219 PLN02334 ribulose-phosphate 3- 55.1 1E+02 0.0022 24.2 8.2 35 81-115 143-181 (229)
220 PRK09819 alpha-mannosidase; Pr 54.9 28 0.00061 33.2 5.6 75 25-115 7-84 (875)
221 TIGR01859 fruc_bis_ald_ fructo 54.6 1.2E+02 0.0026 24.9 11.1 123 26-169 75-214 (282)
222 cd00127 DSPc Dual specificity 54.4 29 0.00063 24.3 4.5 29 125-166 64-92 (139)
223 COG1603 RPP1 RNase P/RNase MRP 54.0 29 0.00064 27.8 4.7 49 109-170 124-177 (229)
224 TIGR00594 polc DNA-directed DN 53.8 53 0.0011 32.1 7.2 51 25-76 1-55 (1022)
225 PRK09358 adenosine deaminase; 53.5 1.3E+02 0.0028 24.9 11.6 60 74-140 130-193 (340)
226 PRK05673 dnaE DNA polymerase I 53.3 49 0.0011 32.7 7.0 52 24-76 1-56 (1135)
227 cd00443 ADA_AMPD Adenosine/AMP 53.0 1.3E+02 0.0028 24.7 12.0 11 24-34 2-12 (305)
228 PRK04147 N-acetylneuraminate l 52.8 1.3E+02 0.0027 24.6 12.0 103 39-163 24-138 (293)
229 TIGR03473 HpnK hopanoid biosyn 52.7 35 0.00076 28.0 5.2 55 30-87 6-60 (283)
230 PLN02954 phosphoserine phospha 52.6 1E+02 0.0022 23.5 8.8 28 37-65 85-112 (224)
231 PTZ00170 D-ribulose-5-phosphat 52.3 83 0.0018 24.8 7.2 24 25-54 67-90 (228)
232 PLN02779 haloacid dehalogenase 49.9 1.4E+02 0.003 24.3 9.0 80 37-117 145-228 (286)
233 PF06908 DUF1273: Protein of u 49.3 89 0.0019 23.9 6.6 75 41-115 31-109 (177)
234 KOG0564|consensus 48.7 39 0.00083 30.4 5.0 59 26-86 78-152 (590)
235 TIGR03128 RuMP_HxlA 3-hexulose 48.6 1.2E+02 0.0026 23.1 8.9 8 24-31 55-62 (206)
236 PRK13125 trpA tryptophan synth 48.5 52 0.0011 26.2 5.5 52 37-90 86-140 (244)
237 TIGR01449 PGP_bact 2-phosphogl 48.2 1.2E+02 0.0025 22.8 8.2 34 37-70 86-119 (213)
238 TIGR01422 phosphonatase phosph 48.1 1.3E+02 0.0029 23.5 9.2 34 38-71 101-134 (253)
239 COG0036 Rpe Pentose-5-phosphat 48.1 1.3E+02 0.0028 24.0 7.5 62 39-105 96-160 (220)
240 PRK07315 fructose-bisphosphate 47.9 1.6E+02 0.0035 24.4 11.1 121 27-169 79-216 (293)
241 TIGR00683 nanA N-acetylneurami 47.9 1.5E+02 0.0033 24.2 10.6 89 40-139 22-124 (290)
242 PLN03243 haloacid dehalogenase 47.8 1.5E+02 0.0031 23.9 8.0 34 38-71 111-144 (260)
243 cd04724 Tryptophan_synthase_al 47.8 1.2E+02 0.0026 24.1 7.5 31 41-71 93-123 (242)
244 cd04724 Tryptophan_synthase_al 47.6 74 0.0016 25.3 6.2 51 39-91 116-166 (242)
245 TIGR00262 trpA tryptophan synt 47.6 1.2E+02 0.0026 24.4 7.5 31 42-72 105-135 (256)
246 PF00702 Hydrolase: haloacid d 47.5 85 0.0019 23.3 6.4 31 38-68 129-159 (215)
247 PRK00110 hypothetical protein; 47.2 1.5E+02 0.0033 23.9 8.7 68 40-107 146-220 (245)
248 PRK09197 fructose-bisphosphate 47.1 1.8E+02 0.004 24.8 12.3 15 155-169 249-263 (350)
249 cd00946 FBP_aldolase_IIA Class 46.8 1.8E+02 0.004 24.8 10.4 15 155-169 245-259 (345)
250 TIGR00587 nfo apurinic endonuc 46.8 1.1E+02 0.0024 24.6 7.2 26 39-64 11-36 (274)
251 cd07393 MPP_DR1119 Deinococcus 46.7 1.4E+02 0.003 23.3 13.6 67 23-90 2-84 (232)
252 PRK13478 phosphonoacetaldehyde 45.9 1.5E+02 0.0033 23.5 10.0 35 38-72 103-137 (267)
253 PF07555 NAGidase: beta-N-acet 45.8 1.8E+02 0.0039 24.3 10.2 75 39-115 15-109 (306)
254 KOG2310|consensus 45.5 82 0.0018 28.7 6.6 55 21-76 12-83 (646)
255 PRK13813 orotidine 5'-phosphat 45.5 1.4E+02 0.003 23.0 9.3 49 24-77 56-106 (215)
256 cd01320 ADA Adenosine deaminas 45.4 1.7E+02 0.0037 23.9 11.4 91 42-140 76-184 (325)
257 PRK06552 keto-hydroxyglutarate 45.1 1.3E+02 0.0028 23.6 7.2 22 45-66 81-102 (213)
258 PF04794 YdjC: YdjC-like prote 45.0 23 0.0005 28.4 3.0 55 33-90 8-62 (261)
259 TIGR02253 CTE7 HAD superfamily 44.5 1.4E+02 0.003 22.6 8.6 25 37-62 95-119 (221)
260 PRK06806 fructose-bisphosphate 44.4 1.8E+02 0.0039 23.9 10.8 122 27-169 76-214 (281)
261 cd07944 DRE_TIM_HOA_like 4-hyd 44.1 1.7E+02 0.0037 23.6 8.6 72 43-119 86-162 (266)
262 TIGR02313 HpaI-NOT-DapA 2,4-di 43.9 1.8E+02 0.0039 23.8 11.2 102 40-163 22-135 (294)
263 TIGR03351 PhnX-like phosphonat 43.1 1.5E+02 0.0032 22.5 8.8 79 37-118 88-173 (220)
264 TIGR01685 MDP-1 magnesium-depe 42.7 71 0.0015 24.3 5.2 45 25-71 36-81 (174)
265 PF13419 HAD_2: Haloacid dehal 41.2 1.3E+02 0.0027 21.2 7.4 77 38-117 79-159 (176)
266 PF13147 Amidohydro_4: Amidohy 41.1 17 0.00038 28.1 1.7 35 24-58 10-50 (304)
267 PRK11148 cyclic 3',5'-adenosin 40.8 1.9E+02 0.0041 23.2 10.0 96 40-140 41-156 (275)
268 PRK11449 putative deoxyribonuc 39.9 26 0.00055 28.3 2.5 15 153-167 125-139 (258)
269 TIGR01454 AHBA_synth_RP 3-amin 39.8 1.6E+02 0.0035 22.1 8.8 31 37-67 76-106 (205)
270 PRK13587 1-(5-phosphoribosyl)- 39.8 78 0.0017 25.1 5.2 42 45-86 91-132 (234)
271 PRK02308 uvsE putative UV dama 38.8 1.4E+02 0.0031 24.8 6.8 88 62-164 46-156 (303)
272 PRK14010 potassium-transportin 38.0 1.2E+02 0.0026 28.2 6.8 68 38-116 443-511 (673)
273 cd00954 NAL N-Acetylneuraminic 37.8 2.2E+02 0.0048 23.1 11.5 102 40-163 22-136 (288)
274 PRK08745 ribulose-phosphate 3- 37.5 2.1E+02 0.0045 22.7 7.5 59 40-103 98-159 (223)
275 TIGR00262 trpA tryptophan synt 37.5 1.3E+02 0.0028 24.3 6.2 43 39-82 127-169 (256)
276 TIGR01549 HAD-SF-IA-v1 haloaci 37.5 1.5E+02 0.0032 21.0 9.3 75 39-117 67-143 (154)
277 PF10566 Glyco_hydro_97: Glyco 37.5 1.9E+02 0.004 23.8 7.2 107 39-162 32-157 (273)
278 PF00290 Trp_syntA: Tryptophan 36.5 2.3E+02 0.0051 23.0 8.4 43 39-82 127-169 (259)
279 cd06563 GH20_chitobiase-like T 36.4 2.6E+02 0.0057 23.5 10.3 72 39-115 86-172 (357)
280 PRK09860 putative alcohol dehy 36.2 2.7E+02 0.0059 23.7 8.8 72 40-115 18-96 (383)
281 cd01427 HAD_like Haloacid deha 35.9 1.3E+02 0.0028 19.9 7.2 26 37-63 25-50 (139)
282 PF06309 Torsin: Torsin; Inte 35.8 37 0.00081 24.7 2.5 43 124-168 21-66 (127)
283 TIGR01182 eda Entner-Doudoroff 35.6 1.2E+02 0.0026 23.7 5.6 45 39-85 20-65 (204)
284 PRK11579 putative oxidoreducta 35.4 1.9E+02 0.0042 23.9 7.2 60 42-109 78-140 (346)
285 cd06564 GH20_DspB_LnbB-like Gl 35.3 2.6E+02 0.0056 23.2 10.1 96 39-139 82-190 (326)
286 TIGR02311 HpaI 2,4-dihydroxyhe 35.2 2.3E+02 0.0051 22.6 7.6 33 44-77 76-109 (249)
287 cd03315 MLE_like Muconate lact 34.9 2.3E+02 0.005 22.5 9.5 21 131-164 220-240 (265)
288 smart00012 PTPc_DSPc Protein t 34.5 41 0.00089 21.9 2.5 12 155-166 39-50 (105)
289 smart00404 PTPc_motif Protein 34.5 41 0.00089 21.9 2.5 12 155-166 39-50 (105)
290 PRK05406 LamB/YcsF family prot 34.2 1.3E+02 0.0028 24.5 5.6 63 25-93 3-69 (246)
291 COG0669 CoaD Phosphopantethein 34.2 2.1E+02 0.0045 21.7 7.9 44 71-115 24-69 (159)
292 PRK15062 hydrogenase isoenzyme 34.2 87 0.0019 26.9 4.8 23 66-88 118-142 (364)
293 TIGR01033 DNA-binding regulato 34.2 2.5E+02 0.0053 22.6 8.8 68 40-107 148-222 (238)
294 TIGR01488 HAD-SF-IB Haloacid D 34.0 1.8E+02 0.0039 20.9 8.0 28 38-66 75-102 (177)
295 PF02007 MtrH: Tetrahydrometha 33.8 1E+02 0.0022 25.7 5.1 36 122-170 44-79 (296)
296 TIGR00075 hypD hydrogenase exp 33.4 92 0.002 26.8 4.9 23 66-88 124-148 (369)
297 smart00195 DSPc Dual specifici 33.4 79 0.0017 22.2 4.0 14 153-166 76-89 (138)
298 PRK12569 hypothetical protein; 33.4 58 0.0013 26.4 3.5 63 25-93 4-72 (245)
299 cd00840 MPP_Mre11_N Mre11 nucl 32.9 2.1E+02 0.0046 21.4 6.8 51 41-91 30-90 (223)
300 PRK01122 potassium-transportin 32.8 1.5E+02 0.0033 27.7 6.5 69 38-117 447-516 (679)
301 cd07399 MPP_YvnB Bacillus subt 32.7 2.3E+02 0.005 21.8 8.1 67 41-107 24-102 (214)
302 TIGR01548 HAD-SF-IA-hyp1 haloa 32.6 2.1E+02 0.0046 21.3 8.3 31 41-71 111-141 (197)
303 PF00289 CPSase_L_chain: Carba 32.2 1E+02 0.0022 21.5 4.3 22 42-64 15-36 (110)
304 PRK14085 imidazolonepropionase 32.0 22 0.00048 30.1 1.0 11 24-34 64-74 (382)
305 PRK14988 GMP/IMP nucleotidase; 31.8 2.4E+02 0.0053 21.8 7.3 76 37-116 94-174 (224)
306 PRK08005 epimerase; Validated 31.7 2.6E+02 0.0055 22.0 7.4 14 41-54 70-83 (210)
307 PRK05678 succinyl-CoA syntheta 31.4 1.1E+02 0.0024 25.3 5.0 37 40-76 77-115 (291)
308 cd06570 GH20_chitobiase-like_1 31.1 3.1E+02 0.0067 22.8 9.4 72 39-115 68-154 (311)
309 PRK15418 transcriptional regul 30.9 1.7E+02 0.0037 24.4 6.1 72 40-115 45-122 (318)
310 PLN02770 haloacid dehalogenase 30.9 2.6E+02 0.0057 21.9 8.1 34 38-71 110-143 (248)
311 PRK09722 allulose-6-phosphate 30.8 2.8E+02 0.006 22.1 7.4 59 40-103 96-157 (229)
312 PF01738 DLH: Dienelactone hyd 30.5 2.4E+02 0.0052 21.3 7.2 44 43-88 84-130 (218)
313 PF03102 NeuB: NeuB family; I 30.3 2E+02 0.0043 23.1 6.1 64 42-105 103-170 (241)
314 cd00331 IGPS Indole-3-glycerol 30.2 2.4E+02 0.0052 21.6 6.6 19 44-62 86-104 (217)
315 PF02608 Bmp: Basic membrane p 30.2 96 0.0021 25.4 4.5 46 39-86 48-93 (306)
316 TIGR03275 methan_mark_8 putati 30.1 3.1E+02 0.0066 22.4 7.0 49 43-92 153-201 (259)
317 PRK06015 keto-hydroxyglutarate 30.1 1.6E+02 0.0036 22.9 5.5 45 39-85 16-61 (201)
318 PRK09140 2-dehydro-3-deoxy-6-p 29.8 1.7E+02 0.0038 22.7 5.6 39 39-78 22-61 (206)
319 PRK00035 hemH ferrochelatase; 29.7 3.2E+02 0.007 22.6 7.6 25 39-63 105-129 (333)
320 PTZ00066 pyruvate kinase; Prov 29.6 4.3E+02 0.0092 23.9 9.2 98 39-161 210-314 (513)
321 COG1242 Predicted Fe-S oxidore 29.6 2E+02 0.0044 24.0 6.1 49 64-115 100-149 (312)
322 PF08756 YfkB: YfkB-like domai 29.6 2.1E+02 0.0047 21.3 5.6 46 62-108 14-61 (153)
323 cd01481 vWA_collagen_alpha3-VI 29.5 1.4E+02 0.0029 22.1 4.8 53 51-112 104-159 (165)
324 cd06565 GH20_GcnA-like Glycosy 29.5 3.2E+02 0.007 22.4 10.0 74 39-117 60-141 (301)
325 COG1540 Uncharacterized protei 29.2 1.5E+02 0.0033 24.0 5.1 63 24-92 2-68 (252)
326 PF01081 Aldolase: KDPG and KH 29.0 1.9E+02 0.0042 22.5 5.7 45 39-85 20-65 (196)
327 PF03746 LamB_YcsF: LamB/YcsF 28.9 63 0.0014 26.2 3.0 28 62-93 40-67 (242)
328 cd07402 MPP_GpdQ Enterobacter 28.3 2E+02 0.0044 22.0 5.8 95 40-139 26-142 (240)
329 PRK09453 phosphodiesterase; Pr 28.2 1.9E+02 0.0041 21.5 5.5 60 24-89 5-75 (182)
330 PF09872 DUF2099: Uncharacteri 28.2 3.3E+02 0.0072 22.2 7.2 49 42-92 152-201 (258)
331 PRK08238 hypothetical protein; 27.9 3.3E+02 0.0071 24.2 7.6 75 36-116 72-147 (479)
332 PLN02940 riboflavin kinase 27.6 3.3E+02 0.0071 23.2 7.4 33 37-69 94-126 (382)
333 cd01309 Met_dep_hydrolase_C Me 27.6 2.4E+02 0.0052 23.6 6.5 83 25-119 194-282 (359)
334 TIGR01497 kdpB K+-transporting 27.5 2.2E+02 0.0048 26.6 6.6 68 38-116 448-516 (675)
335 TIGR01019 sucCoAalpha succinyl 27.5 1.6E+02 0.0035 24.3 5.3 37 40-76 75-113 (286)
336 COG2217 ZntA Cation transport 27.4 3.1E+02 0.0067 25.8 7.6 69 37-116 538-607 (713)
337 cd06568 GH20_SpHex_like A subg 27.4 3.7E+02 0.008 22.5 10.6 30 39-70 75-105 (329)
338 TIGR01662 HAD-SF-IIIA HAD-supe 27.0 2.2E+02 0.0047 19.7 9.6 79 38-119 27-115 (132)
339 cd07396 MPP_Nbla03831 Homo sap 27.0 2.4E+02 0.0053 22.4 6.2 51 40-90 28-86 (267)
340 PLN02575 haloacid dehalogenase 26.9 4.2E+02 0.009 22.9 8.8 76 38-116 218-297 (381)
341 PRK09552 mtnX 2-hydroxy-3-keto 26.8 2.9E+02 0.0063 21.1 9.2 29 37-66 75-103 (219)
342 PF01074 Glyco_hydro_38: Glyco 26.7 1E+02 0.0022 24.7 4.0 95 28-140 6-104 (275)
343 PTZ00242 protein tyrosine phos 26.6 1E+02 0.0023 23.0 3.8 12 155-166 98-109 (166)
344 PF13350 Y_phosphatase3: Tyros 26.1 59 0.0013 24.0 2.3 13 154-166 123-135 (164)
345 PRK13404 dihydropyrimidinase; 26.1 4.5E+02 0.0098 23.1 10.8 106 24-140 119-232 (477)
346 PF01924 HypD: Hydrogenase for 25.8 1.1E+02 0.0023 26.3 4.0 22 66-87 113-136 (355)
347 PRK08091 ribulose-phosphate 3- 25.7 3.5E+02 0.0075 21.6 7.5 47 41-92 105-155 (228)
348 TIGR01520 FruBisAldo_II_A fruc 25.6 4.3E+02 0.0094 22.7 11.1 12 158-169 260-271 (357)
349 TIGR02127 pyrF_sub2 orotidine 25.4 97 0.0021 25.2 3.6 37 52-91 187-223 (261)
350 TIGR02254 YjjG/YfnB HAD superf 25.4 2.9E+02 0.0064 20.6 7.8 76 37-118 98-180 (224)
351 TIGR01163 rpe ribulose-phospha 25.3 3E+02 0.0064 20.7 8.8 48 40-89 67-114 (210)
352 cd00452 KDPG_aldolase KDPG and 25.2 2.6E+02 0.0056 21.1 5.8 39 39-78 16-55 (190)
353 PRK08072 nicotinate-nucleotide 25.0 2.9E+02 0.0063 22.7 6.3 80 20-115 158-239 (277)
354 PRK00748 1-(5-phosphoribosyl)- 24.9 3.2E+02 0.007 21.0 8.0 38 46-83 90-127 (233)
355 TIGR02252 DREG-2 REG-2-like, H 24.9 2.9E+02 0.0064 20.5 7.3 76 38-118 107-187 (203)
356 PRK03692 putative UDP-N-acetyl 24.9 3.7E+02 0.0079 21.6 7.8 71 63-139 143-220 (243)
357 COG3453 Uncharacterized protei 24.7 80 0.0017 23.0 2.6 29 123-167 71-99 (130)
358 cd07400 MPP_YydB Bacillus subt 24.6 2.5E+02 0.0054 19.6 6.4 44 44-87 27-78 (144)
359 COG2390 DeoR Transcriptional r 24.6 4.3E+02 0.0093 22.3 8.2 71 40-115 42-121 (321)
360 PRK13586 1-(5-phosphoribosyl)- 24.5 2E+02 0.0043 22.8 5.2 41 46-86 89-130 (232)
361 TIGR01428 HAD_type_II 2-haloal 24.4 3E+02 0.0065 20.4 7.8 31 38-68 94-124 (198)
362 PRK13226 phosphoglycolate phos 24.2 3.4E+02 0.0073 20.9 8.3 27 37-64 96-122 (229)
363 cd00019 AP2Ec AP endonuclease 24.1 3.7E+02 0.008 21.3 9.5 39 39-77 10-58 (279)
364 COG0352 ThiE Thiamine monophos 23.8 2.5E+02 0.0054 22.1 5.5 48 65-115 113-165 (211)
365 PF13380 CoA_binding_2: CoA bi 23.3 1.9E+02 0.0041 20.1 4.4 34 41-76 68-101 (116)
366 cd01297 D-aminoacylase D-amino 23.3 4.7E+02 0.01 22.3 8.2 87 25-118 214-308 (415)
367 COG3394 Uncharacterized protei 23.0 1.3E+02 0.0028 24.6 3.7 52 33-87 10-61 (257)
368 COG0546 Gph Predicted phosphat 22.9 3.5E+02 0.0077 20.7 8.8 78 38-117 91-171 (220)
369 cd00047 PTPc Protein tyrosine 22.8 1E+02 0.0022 23.8 3.2 24 39-62 52-75 (231)
370 PLN02446 (5-phosphoribosyl)-5- 22.8 2E+02 0.0042 23.6 4.9 44 43-86 95-143 (262)
371 PRK09358 adenosine deaminase; 22.6 91 0.002 25.8 3.0 30 22-54 9-38 (340)
372 TIGR00288 conserved hypothetic 22.6 1.2E+02 0.0025 23.0 3.3 47 40-88 90-139 (160)
373 PF02679 ComA: (2R)-phospho-3- 22.5 2.6E+02 0.0056 22.7 5.5 85 49-140 10-95 (244)
374 smart00518 AP2Ec AP endonuclea 22.4 3.2E+02 0.007 21.5 6.2 26 28-56 2-27 (273)
375 PF01408 GFO_IDH_MocA: Oxidore 22.3 2.1E+02 0.0046 19.2 4.5 67 39-115 52-119 (120)
376 TIGR00007 phosphoribosylformim 22.3 2.6E+02 0.0057 21.5 5.5 39 45-83 87-126 (230)
377 TIGR01490 HAD-SF-IB-hyp1 HAD-s 22.2 3.3E+02 0.0072 20.1 7.7 30 38-68 89-118 (202)
378 PLN02765 pyruvate kinase 22.2 6E+02 0.013 23.1 9.4 97 39-160 207-311 (526)
379 TIGR03729 acc_ester putative p 22.1 3.7E+02 0.008 20.9 6.3 65 24-90 4-74 (239)
380 TIGR01647 ATPase-IIIA_H plasma 22.0 3.2E+02 0.0069 25.7 6.7 29 38-66 444-472 (755)
381 cd01301 rDP_like renal dipepti 22.0 2.9E+02 0.0063 23.0 5.9 32 40-73 155-187 (309)
382 cd00842 MPP_ASMase acid sphing 21.8 4.2E+02 0.0092 21.2 13.1 18 123-140 194-211 (296)
383 TIGR03631 bact_S13 30S ribosom 21.8 85 0.0018 22.2 2.3 27 83-109 34-61 (113)
384 KOG1579|consensus 21.8 4.9E+02 0.011 22.0 9.3 71 44-115 153-227 (317)
385 TIGR01919 hisA-trpF 1-(5-phosp 21.5 2.6E+02 0.0056 22.3 5.4 41 46-86 90-130 (243)
386 TIGR01686 FkbH FkbH-like domai 21.5 4.2E+02 0.009 21.8 6.8 28 39-66 34-61 (320)
387 PF00782 DSPc: Dual specificit 21.4 1.3E+02 0.0028 20.8 3.3 27 127-166 58-84 (133)
388 cd04725 OMP_decarboxylase_like 21.3 3.5E+02 0.0075 21.0 5.9 69 41-115 131-200 (216)
389 PTZ00393 protein tyrosine phos 21.2 1.4E+02 0.0031 24.1 3.7 28 125-165 153-180 (241)
390 cd08177 MAR Maleylacetate redu 21.1 4.6E+02 0.0099 21.8 7.0 68 41-115 11-85 (337)
391 PRK15122 magnesium-transportin 21.0 2E+02 0.0044 27.7 5.3 29 38-66 552-580 (903)
392 PF01244 Peptidase_M19: Membra 20.7 3.4E+02 0.0073 22.6 6.0 32 41-74 162-194 (320)
393 smart00194 PTPc Protein tyrosi 20.7 1.3E+02 0.0027 23.8 3.4 12 155-166 193-204 (258)
394 PRK15454 ethanol dehydrogenase 20.6 5.4E+02 0.012 22.0 9.1 72 40-115 36-114 (395)
395 cd07388 MPP_Tt1561 Thermus the 20.5 3.3E+02 0.0071 21.5 5.7 59 24-88 9-73 (224)
396 cd06232 Peptidase_M14-like_5 P 20.3 3.6E+02 0.0079 21.8 5.8 84 6-90 23-113 (240)
397 cd00288 Pyruvate_Kinase Pyruva 20.3 6.3E+02 0.014 22.6 12.7 100 40-161 176-278 (480)
398 cd00945 Aldolase_Class_I Class 20.3 3.5E+02 0.0076 19.7 10.0 22 39-60 13-34 (201)
399 cd00429 RPE Ribulose-5-phospha 20.2 3.8E+02 0.0082 20.0 8.9 48 40-89 68-115 (211)
400 PRK06698 bifunctional 5'-methy 20.1 5.8E+02 0.013 22.1 8.0 35 37-71 331-365 (459)
401 PF14226 DIOX_N: non-haem diox 20.1 1.5E+02 0.0034 20.0 3.4 35 41-75 17-51 (116)
402 PRK05179 rpsM 30S ribosomal pr 20.0 92 0.002 22.4 2.2 27 83-109 36-63 (122)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9e-39 Score=257.32 Aligned_cols=147 Identities=24% Similarity=0.399 Sum_probs=133.9
Q ss_pred cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHH
Q psy4673 23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL 102 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l 102 (171)
||+|||||||+...|.+|+++++++|+++||..++++|++++++..+++++++||+ +|+++|+||+...+..++.++.|
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~-v~~~~G~HP~~~~~~~~~~~~~l 79 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPN-VYAAVGVHPLDADEHSEEDLEEL 79 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCC-eEEEEeeCCCccccccHHHHHHH
Confidence 68999999999988889999999999999999999999999999999999999996 89999999999334558899999
Q ss_pred HHHhcc-CCeEEEe----cCCCCCC-cHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hc--CceEEEecCC
Q psy4673 103 RDLVSN-TGNSTMN----RYNSSQW-ITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LN--RHLWVHKDSS 165 (171)
Q Consensus 103 ~~~l~~-~~vvaIG----Dy~~~~~-~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~--~p~iiH~fsg 165 (171)
.+++.+ ++++||| ||+|... .++.|+++|++||+||++ +||||+|++++++ .. .++|+|||||
T Consensus 80 ~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsG 159 (256)
T COG0084 80 EQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSG 159 (256)
T ss_pred HHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCC
Confidence 999985 9999999 9999766 688999999999999999 8999999998774 23 6799999999
Q ss_pred Ccccc
Q psy4673 166 MMKEL 170 (171)
Q Consensus 166 ~~~el 170 (171)
+.+++
T Consensus 160 s~e~a 164 (256)
T COG0084 160 SAEEA 164 (256)
T ss_pred CHHHH
Confidence 99875
No 2
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=1.3e-37 Score=251.76 Aligned_cols=145 Identities=28% Similarity=0.490 Sum_probs=130.9
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD 104 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~ 104 (171)
+|||||||+...|.+++++++++|+++||.+++++|+++++|.++++++++||+ +|+++|+|||++.++.++.++.|.+
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~ 79 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIE 79 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHH
Confidence 689999999888889999999999999999999999999999999999999997 8999999999988777778899999
Q ss_pred HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cC-ceEEEecCCCcc
Q psy4673 105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NR-HLWVHKDSSMMK 168 (171)
Q Consensus 105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~-p~iiH~fsg~~~ 168 (171)
++.+++++||| ||+++...++.|+++|++||+||.+ +||||+|++++++ . .. ++|+|||+|+.+
T Consensus 80 ~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~~~ 159 (258)
T PRK10425 80 LAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGTRE 159 (258)
T ss_pred hccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCCHH
Confidence 88888899888 9998766788999999999999999 8999999998764 2 22 489999999988
Q ss_pred cc
Q psy4673 169 EL 170 (171)
Q Consensus 169 el 170 (171)
++
T Consensus 160 ~~ 161 (258)
T PRK10425 160 EM 161 (258)
T ss_pred HH
Confidence 75
No 3
>PRK10812 putative DNAse; Provisional
Probab=100.00 E-value=6e-37 Score=248.77 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=127.9
Q ss_pred cceEeeccCCCC---CCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHH
Q psy4673 23 YVLIDVGANLTN---RKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI 99 (171)
Q Consensus 23 ~~~iDtH~HL~~---~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~ 99 (171)
|++|||||||+. ..|..|+++++++|+++||..++++|+++++|.++++++++||+ ||+++|+|||++.+ +.++
T Consensus 1 ~~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~--~~~~ 77 (265)
T PRK10812 1 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDN-VVFSCGVHPLNQDE--PYDV 77 (265)
T ss_pred CceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCC-eEEEEEeCCCCCCC--hhHH
Confidence 678999999994 45677999999999999999999999999999999999999997 89999999999854 4568
Q ss_pred HHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hcC---ceEEEec
Q psy4673 100 DQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LNR---HLWVHKD 163 (171)
Q Consensus 100 ~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~~---p~iiH~f 163 (171)
+.|++++.+++++||| ||+++..+++.|+++|++||++|++ +||||+|++++++ .+. ++|+|||
T Consensus 78 ~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~f 157 (265)
T PRK10812 78 EELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCF 157 (265)
T ss_pred HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEee
Confidence 8899888888999988 9998767789999999999999999 7999999998663 222 4799999
Q ss_pred CCCcccc
Q psy4673 164 SSMMKEL 170 (171)
Q Consensus 164 sg~~~el 170 (171)
+|+.+++
T Consensus 158 sG~~~~a 164 (265)
T PRK10812 158 TEDRETA 164 (265)
T ss_pred cCCHHHH
Confidence 9998764
No 4
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=1.4e-36 Score=245.70 Aligned_cols=148 Identities=21% Similarity=0.248 Sum_probs=131.0
Q ss_pred ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHH
Q psy4673 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQ 101 (171)
Q Consensus 22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~ 101 (171)
+|.+||+||||+...|..++++++++|+++||..++++|+++++|.++++++++||+ +++++|+|||++.+..+..+++
T Consensus 2 ~~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~ 80 (258)
T PRK11449 2 ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQ 80 (258)
T ss_pred CceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHH
Confidence 456899999999888888999999999999999999999999999999999999997 8999999999998777778888
Q ss_pred HHHHhc-cC-CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh----c--CceEEEecC
Q psy4673 102 LRDLVS-NT-GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL----N--RHLWVHKDS 164 (171)
Q Consensus 102 l~~~l~-~~-~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~----~--~p~iiH~fs 164 (171)
+++++. .+ +++||| ||++....++.|+++|++||+||.+ +||||+|++++++. + .++|+|||+
T Consensus 81 l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fs 160 (258)
T PRK11449 81 LQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFS 160 (258)
T ss_pred HHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCC
Confidence 888774 33 788888 9988666789999999999999999 89999999987642 2 358999999
Q ss_pred CCcccc
Q psy4673 165 SMMKEL 170 (171)
Q Consensus 165 g~~~el 170 (171)
|+.+++
T Consensus 161 G~~~~a 166 (258)
T PRK11449 161 GSLQQA 166 (258)
T ss_pred CCHHHH
Confidence 998765
No 5
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=100.00 E-value=8e-34 Score=229.03 Aligned_cols=145 Identities=25% Similarity=0.417 Sum_probs=122.6
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL 105 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~ 105 (171)
||+||||+...+.++.+++++++.+.|+..++.+++++++|..+.++++++|..+++++|+|||++....++.++.|+++
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l 80 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEEL 80 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHH
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHH
Confidence 79999999966778999999999999999999999999999999999999998799999999999987667777888887
Q ss_pred --hccCCeEEEe----cCCC-CCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----hcC---ceEEEecCCC
Q psy4673 106 --VSNTGNSTMN----RYNS-SQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----LNR---HLWVHKDSSM 166 (171)
Q Consensus 106 --l~~~~vvaIG----Dy~~-~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~~~---p~iiH~fsg~ 166 (171)
+..++++||| ||++ +..+++.|+++|++||+||.+ +||||+|++++++ +.. ++|+|||+|+
T Consensus 81 ~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~ 160 (255)
T PF01026_consen 81 INLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCFSGS 160 (255)
T ss_dssp HHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT--S-
T ss_pred HHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhccccceeEEEecCCCC
Confidence 7889998887 9965 577899999999999999999 8999999998874 332 5899999999
Q ss_pred cccc
Q psy4673 167 MKEL 170 (171)
Q Consensus 167 ~~el 170 (171)
.+++
T Consensus 161 ~~~~ 164 (255)
T PF01026_consen 161 PEEA 164 (255)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 6
>KOG3020|consensus
Probab=99.95 E-value=5.6e-28 Score=196.73 Aligned_cols=152 Identities=30% Similarity=0.483 Sum_probs=134.5
Q ss_pred CCCccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHH-
Q psy4673 19 CFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDED- 97 (171)
Q Consensus 19 ~~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~- 97 (171)
+....++.|.|+|+.......+...++.+|...||..++.+|++.++++.+++++++||+.+++++|+|||++..+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~~~~~~~ 91 (296)
T KOG3020|consen 12 NFTNPMLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQEFSDQS 91 (296)
T ss_pred hhcchhhchhhhccccCCCCccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCCcccchhhcc
Confidence 3344489999999999888888899999999999999999999999999999999999767999999999999887663
Q ss_pred ----HHHHHHHHhcc---CCeEEEe----cCCCC-CCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhhh------
Q psy4673 98 ----YIDQLRDLVSN---TGNSTMN----RYNSS-QWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEHL------ 154 (171)
Q Consensus 98 ----~~~~l~~~l~~---~~vvaIG----Dy~~~-~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~~------ 154 (171)
.++.|..++.. +++|||| ||.+. ..+.+.|+.+|++||+||.+ +||||.|++++++.
T Consensus 92 ~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eIl~~~~~ 171 (296)
T KOG3020|consen 92 RKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLP 171 (296)
T ss_pred chhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhhHHHHHHHHHhcc
Confidence 78888888877 8999999 99886 78899999999999999999 89999999987643
Q ss_pred --cCceEEEecCCCcccc
Q psy4673 155 --NRHLWVHKDSSMMKEL 170 (171)
Q Consensus 155 --~~p~iiH~fsg~~~el 170 (171)
.+++++|||+|+.+++
T Consensus 172 ~~~~~vvvHsFtGs~e~~ 189 (296)
T KOG3020|consen 172 ECHKKVVVHSFTGSAEEA 189 (296)
T ss_pred ccCCceEEEeccCCHHHH
Confidence 2369999999998864
No 7
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=99.93 E-value=8.2e-25 Score=174.32 Aligned_cols=144 Identities=23% Similarity=0.334 Sum_probs=122.1
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD 104 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~ 104 (171)
|||+|||++...+..+++++++++..+|+..++.+++++.+++.+.++++++| .|++++|+||++.....+..++++++
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~ 79 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELER 79 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHH
Confidence 68999999976554579999999999999999999999999999999999999 79999999999877655677889999
Q ss_pred HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cCceEEEecCCCccc
Q psy4673 105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NRHLWVHKDSSMMKE 169 (171)
Q Consensus 105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~p~iiH~fsg~~~e 169 (171)
++..++++||| |++......+.|.++|++|+++|.+ ++||+++..++++ . ...+|+|+|+|+.++
T Consensus 80 ~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~~~~~~~~~i~H~~~~~~~~ 159 (252)
T TIGR00010 80 LAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAEEDVLDILREEKPKVGGVLHCFTGDAEL 159 (252)
T ss_pred HccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence 98888898888 7765444467799999999999999 7999998766543 2 446899999887654
No 8
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.92 E-value=4.9e-24 Score=169.59 Aligned_cols=144 Identities=29% Similarity=0.443 Sum_probs=123.1
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRD 104 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~ 104 (171)
|||+|||++...+..+.+++++++.++||..++++++.+++++.+.+++++++. +++++|+||+++....+..++.+++
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~-i~~~~G~hP~~~~~~~~~~~~~l~~ 79 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDN-VYAAVGLHPHDADEHVDEDLDLLEL 79 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCC-eEEEEeeCcchhhcCCHHHHHHHHH
Confidence 689999999865545789999999999999999999999999999999999985 8999999999987766677889999
Q ss_pred HhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHhh----h--cCceEEEecCCCccc
Q psy4673 105 LVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKEH----L--NRHLWVHKDSSMMKE 169 (171)
Q Consensus 105 ~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~~----~--~~p~iiH~fsg~~~e 169 (171)
++..+.+++|| |+++...+.+.|.++|+.|+++|.+ ++||+++..++++ + .+.+|+|+|+|+.++
T Consensus 80 ~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~ 159 (251)
T cd01310 80 LAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYGPPKRGVFHCFSGSAEE 159 (251)
T ss_pred HhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhcCCCCCEEEEccCCCHHH
Confidence 88877788887 8776545688999999999999999 7999998776653 3 356899999987643
No 9
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=99.82 E-value=5.1e-20 Score=143.64 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=101.8
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh----------hhHHHHHHH----HHhcCCcEEEEeeeCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL----------KSSKEALRL----ARIYPGMVYSTAGIHPH 89 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~----------~~~~~~~~l----~~~~~~~v~~~~GiHP~ 89 (171)
|+||+|.|++...| +| +.++..+||..+|.++-+| ..|++++.. ++++.-.+++|+|+||.
T Consensus 1 ~~iD~HiH~d~r~~-eD----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr 75 (254)
T COG1099 1 MYIDSHIHLDVRGF-ED----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPR 75 (254)
T ss_pred CccccccccccccH-HH----HHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCC
Confidence 58999999998765 33 3667888999999888875 234554433 44554458999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCccc
Q psy4673 90 EAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKE 169 (171)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~e 169 (171)
.++...+..+++|+.++.+..+||||....+..+ +..+++|+.||+||+ +++.|+|||++.+++.|
T Consensus 76 ~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t-~~E~evf~~QL~LA~-------------e~dvPviVHTPr~nK~e 141 (254)
T COG1099 76 AIPPELEEVLEELEELLSNEDVVAIGEIGLEEAT-DEEKEVFREQLELAR-------------ELDVPVIVHTPRRNKKE 141 (254)
T ss_pred CCCchHHHHHHHHHhhcccCCeeEeeecccccCC-HHHHHHHHHHHHHHH-------------HcCCcEEEeCCCCcchh
Confidence 8876566788899999888899999976665444 348899999999999 99999999999999876
Q ss_pred c
Q psy4673 170 L 170 (171)
Q Consensus 170 l 170 (171)
.
T Consensus 142 ~ 142 (254)
T COG1099 142 A 142 (254)
T ss_pred H
Confidence 4
No 10
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.45 E-value=5.6e-13 Score=108.98 Aligned_cols=125 Identities=11% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----CCCHHHH-HHHHH-H---hcc
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAGIHPHEAK-----SWDEDYI-DQLRD-L---VSN 108 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~~~~~~~-~~l~~-~---l~~ 108 (171)
....++++..+||..++.++++ ..++..+++++++++-.+++++|+||+... ....+.+ +.+.+ + +..
T Consensus 34 ~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 113 (293)
T cd00530 34 AKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEG 113 (293)
T ss_pred HHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCccChHHHhhCCHHHHHHHHHHHHHhcccc
Confidence 4556788999999999999986 468999999999988448999999998753 1111222 11221 2 223
Q ss_pred C--CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh---hhHhHh----hhcC-c---eEEEec-CC
Q psy4673 109 T--GNSTMN----RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK---NFSRKE----HLNR-H---LWVHKD-SS 165 (171)
Q Consensus 109 ~--~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~---a~~~~~----~~~~-p---~iiH~f-sg 165 (171)
+ ++++|| |+ ...+.|+++|++|+++|++ +||+|+ +.++++ +.+. | ++.|+| ++
T Consensus 114 ~~i~~~~IGEigld~----~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~ 189 (293)
T cd00530 114 TGIKAGIIKEAGGSP----AITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRND 189 (293)
T ss_pred CCcCceEEEEeecCC----CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCC
Confidence 4 345566 65 2458899999999999999 799997 666654 3332 2 788999 56
Q ss_pred Cccc
Q psy4673 166 MMKE 169 (171)
Q Consensus 166 ~~~e 169 (171)
+.++
T Consensus 190 ~~~~ 193 (293)
T cd00530 190 DPDY 193 (293)
T ss_pred CHHH
Confidence 5543
No 11
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=91.52 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=95.7
Q ss_pred CccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC----------hhhHHHHHHH----H----HhcCCcEEE
Q psy4673 21 DNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS----------LKSSKEALRL----A----RIYPGMVYS 82 (171)
Q Consensus 21 ~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~----------~~~~~~~~~l----~----~~~~~~v~~ 82 (171)
..+.++|.|.|++... ....+++++.+.+|-..++.+.-. .+++.++.+. + +..+...|+
T Consensus 3 ~~~~v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~ 80 (285)
T COG1831 3 YDIPVTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYA 80 (285)
T ss_pred cccceecceeeecCCc--CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEE
Confidence 3567999999999753 367899999999999888776542 3456555432 2 234433699
Q ss_pred EeeeCCCCCCC-----CC-HH-------HHHHHHHHhccCCeEEEecCCC-----CCCcHHHHHHHHHHHHHHhhHHHHh
Q psy4673 83 TAGIHPHEAKS-----WD-ED-------YIDQLRDLVSNTGNSTMNRYNS-----SQWITEIKQTLFTTFVDITALCEFC 144 (171)
Q Consensus 83 ~~GiHP~~~~~-----~~-~~-------~~~~l~~~l~~~~vvaIGDy~~-----~~~~~~~Q~~~F~~ql~lA~~~iH~ 144 (171)
.+|+||-.... ++ ++ .++...+++.+.+++|||...+ ..+-++.-.++++.-+++|+
T Consensus 81 vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~----- 155 (285)
T COG1831 81 VVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAK----- 155 (285)
T ss_pred EeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhh-----
Confidence 99999965431 11 12 3445566777889999994433 22346777899999999999
Q ss_pred hhhhHhHhhhcCceEEEecCCCccc
Q psy4673 145 QKNFSRKEHLNRHLWVHKDSSMMKE 169 (171)
Q Consensus 145 r~a~~~~~~~~~p~iiH~fsg~~~e 169 (171)
+.+.|+++|+.+.+.++
T Consensus 156 --------dvdc~vqLHtes~~~~~ 172 (285)
T COG1831 156 --------DVDCAVQLHTESLDEET 172 (285)
T ss_pred --------cCCCcEEEecCCCChHH
Confidence 99999999999988764
No 12
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.12 E-value=1.4e-10 Score=97.91 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=87.5
Q ss_pred ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEe-----eeCCC-CCCCC
Q psy4673 24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTA-----GIHPH-EAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~-----GiHP~-~~~~~ 94 (171)
.+||+|||+... .+..+++. .+...||..++.+++ .+.+++...+++++++..+++++ |+||. .....
T Consensus 51 G~ID~H~H~~~~~~~~~~~~~~---~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~ 127 (365)
T TIGR03583 51 GWIDDHTHCFPKSALYYDEPDE---IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADL 127 (365)
T ss_pred CEEEeeeccCCCcccccCCHhH---hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhCh
Confidence 499999999842 23344443 356789998887665 67888888888888874466665 88874 44444
Q ss_pred CHHHHHHHHHHhc-cC-CeEEEecCC-C---CCCcHHHHHHHHHHHHHHhhH----HHHhhhhhHh---Hhhhc--CceE
Q psy4673 95 DEDYIDQLRDLVS-NT-GNSTMNRYN-S---SQWITEIKQTLFTTFVDITAL----CEFCQKNFSR---KEHLN--RHLW 159 (171)
Q Consensus 95 ~~~~~~~l~~~l~-~~-~vvaIGDy~-~---~~~~~~~Q~~~F~~ql~lA~~----~iH~r~a~~~---~~~~~--~p~i 159 (171)
.+...+.+++++. .+ .++|++-+. . .....+ -.-|.+|+..+.. ++||+.+..+ +++.- -.++
T Consensus 128 ~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~--~~~~~~~l~~~~~~~pv~vH~~~a~~~~~~i~~~~~~g~~~ 205 (365)
T TIGR03583 128 SNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIE--PLEIAKQIQQENLELPLMVHIGSAPPELDEILALMEKGDVL 205 (365)
T ss_pred HHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcC--HHHHHHHHHHhcCCCcEEEEeCCCccCHHHHHHHhcCCCee
Confidence 4446677776665 35 377755111 0 001100 1125667776622 7999998754 44432 1379
Q ss_pred EEecCCCc
Q psy4673 160 VHKDSSMM 167 (171)
Q Consensus 160 iH~fsg~~ 167 (171)
.|+|+|+.
T Consensus 206 ~H~fng~~ 213 (365)
T TIGR03583 206 THCFNGKP 213 (365)
T ss_pred eeeecCCC
Confidence 99999987
No 13
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.07 E-value=2e-09 Score=92.71 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=85.4
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC------CChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC---
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG------SSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSW--- 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~------~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~--- 94 (171)
.+||+|+|+....+ +.+++.+.|...||..++... ++++.++..++.++++|..+|.++ |..++..
T Consensus 10 G~ID~H~Hi~~~~~--~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~---p~~vp~t~~e 84 (422)
T cd01295 10 GFIDAHLHIESSML--TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML---PSCVPATPFE 84 (422)
T ss_pred CEEEccCCcCCCCC--ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC---CCcCCCCCCC
Confidence 58999999998643 556788888999999988864 678889999998888885466555 5543311
Q ss_pred ---CHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 95 ---DEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 95 ---~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
..-.+++++++++.++++|+| ||+.-.. ..+.|.+++++|+ +.++|+.+|+....
T Consensus 85 ~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v~~----~~~~l~~~i~~A~-------------~~g~~v~~Ha~g~~ 145 (422)
T cd01295 85 TSGAELTAEDIKELLEHPEVVGLGEVMDFPGVIE----GDDEMLAKIQAAK-------------KAGKPVDGHAPGLS 145 (422)
T ss_pred CCCCcCCHHHHHHHhcCCCCcEEEEeccCccccC----CcHHHHHHHHHHH-------------hCCCEEEEeCCCCC
Confidence 111367788888888999999 6653111 2236888999999 66666666665433
No 14
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.42 E-value=1.8e-06 Score=68.01 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=71.8
Q ss_pred eEeeccCCCCCCCC--------------------CCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCC
Q psy4673 25 LIDVGANLTNRKFG--------------------RDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPG 78 (171)
Q Consensus 25 ~iDtH~HL~~~~~~--------------------~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~ 78 (171)
+||+|+|+....+. .+....+.++...||..++..+... +.++...+.+++.|+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 58999998763221 2356777889999999888766543 456777888887743
Q ss_pred -cEEEEeeeCCCCCCCCCHHHHHHHHHHhcc---CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673 79 -MVYSTAGIHPHEAKSWDEDYIDQLRDLVSN---TGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN 147 (171)
Q Consensus 79 -~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~---~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a 147 (171)
.++.+.|+++..... .+...+.+.+++.. ..+++|+ ...+... ..+.+.|.+.+++|++ .+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~i~~H~~~~ 156 (275)
T cd01292 81 IRVVLGLGIPGVPAAV-DEDAEALLLELLRRGLELGAVGLKLAGPYTAT--GLSDESLRRVLEEARKLGLPVVIHAGEL 156 (275)
T ss_pred eeeEEeccCCCCcccc-chhHHHHHHHHHHHHHhcCCeeEeeCCCCCCC--CCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence 356667888754321 11222222233322 3466676 2222111 1245678888999995 4666543
No 15
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=98.38 E-value=7e-06 Score=66.43 Aligned_cols=116 Identities=12% Similarity=0.199 Sum_probs=72.7
Q ss_pred eEeeccCCCCCCC------------CCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 25 LIDVGANLTNRKF------------GRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 25 ~iDtH~HL~~~~~------------~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.||||+|+....+ .-.++++++.++..||.+.|.+..+. .+....++..+.+ +++...++++|..
T Consensus 2 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~-~r~~g~~~~~p~~ 80 (263)
T cd01311 2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASN-GKARGGATVDPRT 80 (263)
T ss_pred CEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhC-CCeEEEEEECCCC
Confidence 5899999986432 34688999999999999888776432 2344455555544 4577778888864
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEe--cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMN--RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIG--Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
. . .++|+++ ..+.++||. .......+ -..+.+.++.+. ++++|+.+|+...
T Consensus 81 ~---~---~~~l~~~-~~~g~rGvRl~~~~~~~~~----~~~~~~~~~~~~-------------~~gl~v~~~~~~~ 133 (263)
T cd01311 81 T---T---DAELKEM-HDAGVRGVRFNFLFGGVDN----KDELDEIAKRAA-------------ELGWHVQVYFDAV 133 (263)
T ss_pred C---C---HHHHHHH-HHCCCeEEEEecccCCCCC----HHHHHHHHHHHH-------------HcCCEEEEEeCHh
Confidence 2 2 2455555 457899988 22211111 133455667777 5566666665443
No 16
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=97.85 E-value=0.0001 Score=58.60 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=68.8
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC----C----------------hhhHHHHHHHHHhcCCcEEEEee
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS----S----------------LKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~----~----------------~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
||+|+|+.. .......+..+.+.++........ . ....+...+...++|..+.+.++
T Consensus 1 ID~H~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 77 (273)
T PF04909_consen 1 IDAHIHLPG---EWDPEERLPEMDKQGVDRQLASPEDLLVDMDVAGVDGADEVQASARGFNDWLVELAAKHPDRFIGFAA 77 (273)
T ss_dssp EEEEEEEGG---GTCHHHHHHHHHHHTEEEEEEEHEEEEHCHHHGGHSHHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CcCcccCCC---CcCchhhhhHHHhcCCchhhcCHHHHHhhHhHhccchHHHHhhHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999832 234555566666677654322111 1 01234455666777777777788
Q ss_pred eCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCC-CCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673 86 IHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNS-SQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH 161 (171)
Q Consensus 86 iHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~-~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH 161 (171)
+.|... ++..+++++.+.+.+++||+ .... ...+.. .. ...+++|. ++++|+.+|
T Consensus 78 ~~~~~~----~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~-~~---~~~~~~~~-------------~~~~pv~~H 136 (273)
T PF04909_consen 78 IPPPDP----EDAVEELERALQELGFRGVKLHPDLGGFDPDDPR-LD---DPIFEAAE-------------ELGLPVLIH 136 (273)
T ss_dssp ETTTSH----HHHHHHHHHHHHTTTESEEEEESSETTCCTTSGH-CH---HHHHHHHH-------------HHT-EEEEE
T ss_pred ecCCCc----hhHHHHHHHhccccceeeeEecCCCCccccccHH-HH---HHHHHHHH-------------hhccceeee
Confidence 888653 46889999999888898888 2222 111212 11 34458888 777777777
Q ss_pred e
Q psy4673 162 K 162 (171)
Q Consensus 162 ~ 162 (171)
+
T Consensus 137 ~ 137 (273)
T PF04909_consen 137 T 137 (273)
T ss_dssp E
T ss_pred c
Confidence 4
No 17
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.56 E-value=0.0013 Score=54.94 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=52.7
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC------hhhH-HHHHHHHHhc-CCcEEEEeeeCCCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS------LKSS-KEALRLARIY-PGMVYSTAGIHPHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~-~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~ 95 (171)
.+||.|+|+-.. +++....+.|...| ..++..... ++.. +...++++.+ +..+.+.+|+||....
T Consensus 5 g~iD~h~h~~~~---~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 77 (335)
T cd01294 5 RPDDMHLHLRDG---AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTENT--- 77 (335)
T ss_pred CcceeEecCCCc---hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccCCC---
Confidence 489999999863 67888889999999 887765432 2322 3334455665 4446666888876321
Q ss_pred HHHHHHHHHHhccCCeEEEe
Q psy4673 96 EDYIDQLRDLVSNTGNSTMN 115 (171)
Q Consensus 96 ~~~~~~l~~~l~~~~vvaIG 115 (171)
..+++++++....++|+-
T Consensus 78 --~~~el~~~~~~~G~~g~K 95 (335)
T cd01294 78 --TPEELREAKKKGGIRGVK 95 (335)
T ss_pred --CHHHHHHHHHhCCceEEE
Confidence 245666665443556654
No 18
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.51 E-value=0.00046 Score=57.71 Aligned_cols=138 Identities=12% Similarity=-0.045 Sum_probs=69.5
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHH-HHHhcCCcEEEE--eeeC----CCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALR-LARIYPGMVYST--AGIH----PHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~-l~~~~~~~v~~~--~GiH----P~~~~~~~ 95 (171)
.+||+|+|+..... ++.+..-+.|...||..++..+. .+......++ +.+.....+++. ++.| |...++..
T Consensus 35 G~iD~H~H~~~~g~-~~~~~~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~ 113 (338)
T cd01307 35 GWIDLHVHVYQGGT-RYGDRPDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPD 113 (338)
T ss_pred CeEEeeecCCCCCc-ccCCCHhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChh
Confidence 49999999986432 11122334467789988886553 3333332122 222221112321 2222 22222222
Q ss_pred HHHHHHHHHHhcc--CCeEEEe----cCC-CCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhhHhHh---hhc--Cce
Q psy4673 96 EDYIDQLRDLVSN--TGNSTMN----RYN-SSQWITEIKQTLFTTFVDITAL-----CEFCQKNFSRKE---HLN--RHL 158 (171)
Q Consensus 96 ~~~~~~l~~~l~~--~~vvaIG----Dy~-~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~~~~~---~~~--~p~ 158 (171)
....+.+.+.+.+ ..+++|. ... ... ...-+++++++|++ ++||+.+..++. +.- ..+
T Consensus 114 ~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~-----~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g~~ 188 (338)
T cd01307 114 NIDEDAVVAAAREYPDVIVGLKARASKSVVGEW-----GIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRGDV 188 (338)
T ss_pred HCCHHHHHHHHHHCcCcEEEEEEEeeccccccc-----CCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCCCE
Confidence 2234555555532 3444433 111 111 11126688888888 799999865433 221 247
Q ss_pred EEEecCCCc
Q psy4673 159 WVHKDSSMM 167 (171)
Q Consensus 159 iiH~fsg~~ 167 (171)
++|+|+|+.
T Consensus 189 ~~H~~~g~~ 197 (338)
T cd01307 189 LTHCFNGKP 197 (338)
T ss_pred EEeccCCCC
Confidence 999999976
No 19
>PRK09875 putative hydrolase; Provisional
Probab=97.46 E-value=0.0033 Score=52.05 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=79.3
Q ss_pred CCccceEeeccCCCCC--CC-------CCCHHHHH---HHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcCCcEEEEee
Q psy4673 20 FDNYVLIDVGANLTNR--KF-------GRDLESVV---QRAKDSGVQKIIAIGSS--LKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 20 ~~~~~~iDtH~HL~~~--~~-------~~d~~~vl---~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
++.+.++.+|=||... .+ .++.+.++ .+.++.|+..+|.+++- =.+-..+.+++++-.-.|.++-|
T Consensus 3 ~~~lG~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG 82 (292)
T PRK09875 3 FDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTG 82 (292)
T ss_pred hhhCCcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCc
Confidence 4566788999998531 11 12344444 44677999988876642 13455666677775534788888
Q ss_pred eCC-----CCCCCCCHHH-----HHHHHHHhc----cCCeE-EEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhH
Q psy4673 86 IHP-----HEAKSWDEDY-----IDQLRDLVS----NTGNS-TMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFS 149 (171)
Q Consensus 86 iHP-----~~~~~~~~~~-----~~~l~~~l~----~~~vv-aIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~ 149 (171)
+|- .+....+.++ +.+|.+.+. ++.++ .|| ++.. -.+..+++|+++.+.+.
T Consensus 83 ~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~---it~~E~kvl~Aaa~a~~---------- 149 (292)
T PRK09875 83 YYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGK---ITPLEEKVFIAAALAHN---------- 149 (292)
T ss_pred CCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCC---CCHHHHHHHHHHHHHHH----------
Confidence 773 3333333222 334444444 23454 355 4422 23567899999999999
Q ss_pred hHhhhcCceEEEecCC
Q psy4673 150 RKEHLNRHLWVHKDSS 165 (171)
Q Consensus 150 ~~~~~~~p~iiH~fsg 165 (171)
+.+.|+++|+-.+
T Consensus 150 ---~TG~pi~~Ht~~~ 162 (292)
T PRK09875 150 ---QTGRPISTHTSFS 162 (292)
T ss_pred ---HHCCcEEEcCCCc
Confidence 7888888886554
No 20
>PRK09237 dihydroorotase; Provisional
Probab=97.18 E-value=0.0027 Score=53.88 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=71.4
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhc---CCcEEEEeeeC----CCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIY---PGMVYSTAGIH----PHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~---~~~v~~~~GiH----P~~~~~~~ 95 (171)
.+||+|+|+.... .......-+.+...|+..++..+. .+...+...+..... +-..|..++.+ |....+..
T Consensus 54 G~iD~H~H~~~~~-~~~~~~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~ 132 (380)
T PRK09237 54 GWIDLHVHVYPGS-TPYGDEPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLE 132 (380)
T ss_pred CEEEeeecCCCCC-CccCCCHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHh
Confidence 3999999997431 110012235567889998887654 444444444443322 21123323322 32111111
Q ss_pred HHHHHHHHHHhcc-C-CeEEEe---cCCC-CCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh---HhHhhhcC--ceE
Q psy4673 96 EDYIDQLRDLVSN-T-GNSTMN---RYNS-SQWITEIKQTLFTTFVDITAL-----CEFCQKNF---SRKEHLNR--HLW 159 (171)
Q Consensus 96 ~~~~~~l~~~l~~-~-~vvaIG---Dy~~-~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~---~~~~~~~~--p~i 159 (171)
....+.+.+++.+ + .+++++ ++.. .....+ ..+....+|.+ .+||+++. +++.++-. .++
T Consensus 133 ~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~~~~~~----~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g~~~ 208 (380)
T PRK09237 133 DIDADAVAEAVKRNPDFIVGIKARMSSSVVGDNGIE----PLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPGDIL 208 (380)
T ss_pred HCCHHHHHHHHHhCcCcEEEEEEEEecccccccCCc----hHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCCCEE
Confidence 2245667777653 4 488888 3321 111111 12233333444 79998863 45554433 379
Q ss_pred EEecCCCc
Q psy4673 160 VHKDSSMM 167 (171)
Q Consensus 160 iH~fsg~~ 167 (171)
.|+|+|+.
T Consensus 209 ~H~~~~~~ 216 (380)
T PRK09237 209 THCFNGKP 216 (380)
T ss_pred EecCCCCC
Confidence 99999986
No 21
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=97.02 E-value=0.023 Score=48.23 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=69.2
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYPGM-VYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~ 94 (171)
.+||.|+|+.... ..++.+...+.|...||..++..... ++.+....+.+++.+.. +++..|+.++..
T Consensus 15 G~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 91 (374)
T cd01317 15 GLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLK--- 91 (374)
T ss_pred CEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCC---
Confidence 4899999997643 24688888899999999988876532 34455555555544321 233355544421
Q ss_pred CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
...++.+..+.. ..+.++.++.+...+.. .+.+-++.|+ +++.++++|+-+
T Consensus 92 -~~~~~~i~~l~~-~G~~~~k~~~~~~~~~~----~l~~~~~~~~-------------~~g~~v~~H~E~ 142 (374)
T cd01317 92 -GEELTEIGELLE-AGAVGFSDDGKPIQDAE----LLRRALEYAA-------------MLDLPIIVHPED 142 (374)
T ss_pred -cccHHHHHHHHH-CCcEEEEcCCcCCCCHH----HHHHHHHHHH-------------hcCCeEEEecCC
Confidence 123556666543 34556554433212222 2344457777 677777777744
No 22
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=97.01 E-value=0.0073 Score=54.06 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=54.1
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-------------hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-------------KSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-------------~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+.+ .+.|...||..++..|+.| +.+.+.++.++..|- -+|++-.-
T Consensus 130 G~ID~HvH~~~P~~-------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pi----n~g~~gkg 198 (567)
T cd00375 130 GGIDTHVHFICPQQ-------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPV----NIGFLGKG 198 (567)
T ss_pred ceEECccCCCCccH-------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCc----eEEEEecC
Confidence 49999999865421 3667888999988854443 556666666665552 23333211
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
. ...++.|.++++ ..+++++ ||.. +. ..+.+-|+.|.
T Consensus 199 ~----~~~l~eL~e~~~-aGA~GfK~~eD~g~---t~----~~i~~aL~~A~ 238 (567)
T cd00375 199 N----GSSPDALAEQIE-AGACGLKLHEDWGA---TP----AAIDTCLSVAD 238 (567)
T ss_pred c----cccHHHHHHHHH-cCCEEEEecCCCCC---CH----HHHHHHHHHHH
Confidence 1 124566666653 3466666 5532 21 24556668888
No 23
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=96.92 E-value=0.011 Score=53.09 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=54.3
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE------eCCChhhHHHHHHHHHhcCCcEEEEeeeC-CCCCCCCCH
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA------IGSSLKSSKEALRLARIYPGMVYSTAGIH-PHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~------v~~~~~~~~~~~~l~~~~~~~v~~~~GiH-P~~~~~~~~ 96 (171)
.+||+|+|+..... ..+++.+.+-..|+..++. .....+..+..++.+++.|-.+|.++..- |.-.-+...
T Consensus 51 G~ID~H~Hi~~~~~--~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g 128 (552)
T TIGR01178 51 GFIDAHIHIESSML--TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSG 128 (552)
T ss_pred CeEecccccCCCCC--ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCC
Confidence 49999999986533 3445556677788877764 22345666666776666664444333211 210001111
Q ss_pred H--HHHHHHHHhccCCeEEEe
Q psy4673 97 D--YIDQLRDLVSNTGNSTMN 115 (171)
Q Consensus 97 ~--~~~~l~~~l~~~~vvaIG 115 (171)
. ..++++++++++.++++|
T Consensus 129 ~~~~~~~i~~~~~~~~V~glk 149 (552)
T TIGR01178 129 AVLTAEDIDELMELDEVLGLA 149 (552)
T ss_pred CccCHHHHHHHHcCCCccEEE
Confidence 1 356778888888999999
No 24
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=96.91 E-value=0.012 Score=50.00 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=69.0
Q ss_pred ceEeeccCCCCCCCC--CCHHHHHHHHHhcCCCEEEEeCCC----hhhHHHHHHHHHhcCCcEEEEeeeCCCCC---CC-
Q psy4673 24 VLIDVGANLTNRKFG--RDLESVVQRAKDSGVQKIIAIGSS----LKSSKEALRLARIYPGMVYSTAGIHPHEA---KS- 93 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~v~~~----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~---~~- 93 (171)
.+||+|+|+...... .+.+ ..+...|+..++..++. .+.+.+....+++.+-+.+..+|.+.-.. .+
T Consensus 57 GliD~H~H~~~~g~~~~~~~~---~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~ 133 (379)
T PRK12394 57 GLIDYHAHVFYDGTEGGVRPD---MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQEN 133 (379)
T ss_pred CEEEeeecCCCCCcccccCHH---HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccc
Confidence 499999999653211 1222 22567899988887653 22233322223333333455555552111 01
Q ss_pred CCHH--HHHHHHHHhcc--CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhhh---HhHhhhc-C-ce
Q psy4673 94 WDED--YIDQLRDLVSN--TGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQKNF---SRKEHLN-R-HL 158 (171)
Q Consensus 94 ~~~~--~~~~l~~~l~~--~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a~---~~~~~~~-~-p~ 158 (171)
.... ..+++++++.. +.+.+++ .+...... ..-.+.|.+.+++|++ .+|+..+. .+++++- . .+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~g~~ 212 (379)
T PRK12394 134 YDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDIA-EYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRRGDI 212 (379)
T ss_pred cChhHCCHHHHHHHHHHCcCcEEEEEEEEeccccc-ccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCCCCE
Confidence 1111 13555665543 4555655 33221100 1125578889999996 57776542 2222321 1 25
Q ss_pred EEEecCCC
Q psy4673 159 WVHKDSSM 166 (171)
Q Consensus 159 iiH~fsg~ 166 (171)
+.|++.+.
T Consensus 213 ~~H~~~~~ 220 (379)
T PRK12394 213 IAHAFHGK 220 (379)
T ss_pred EEecCCCC
Confidence 66776644
No 25
>PLN02795 allantoinase
Probab=96.75 E-value=0.016 Score=51.38 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=68.7
Q ss_pred ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeC--CCh-hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHH
Q psy4673 24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIG--SSL-KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDED 97 (171)
Q Consensus 24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~--~~~-~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~ 97 (171)
.+||+|+|+....+ .++.....+.+...||..++... +.| .+....++...+. ....+.-+|+|+.... ....
T Consensus 100 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~~ 178 (505)
T PLN02795 100 GLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVP-ENAH 178 (505)
T ss_pred CEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccC-cchh
Confidence 39999999976432 24555666777778998877664 322 2333333322221 1123455788863222 2223
Q ss_pred HHHHHHHHhccCCeEEE----e---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 98 YIDQLRDLVSNTGNSTM----N---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 98 ~~~~l~~~l~~~~vvaI----G---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
.++.+.++.+. .+++| | ++.+... ....+.+-++.|+ ++++|+.+|+-+.+
T Consensus 179 ~~~~l~~~~~~-G~~g~k~f~~~~~~~~~~~~----~~~~l~~~~~~a~-------------~~g~~v~iH~E~~~ 236 (505)
T PLN02795 179 NASVLEELLDA-GALGLKSFMCPSGINDFPMT----TATHIKAALPVLA-------------KYGRPLLVHAEVVS 236 (505)
T ss_pred HHHHHHHHHHC-CCcEEEEEecccCCCCcccC----CHHHHHHHHHHHH-------------HhCCEEEEecCChh
Confidence 56666665432 23222 2 2211111 2345667778898 88888888887754
No 26
>PRK07369 dihydroorotase; Provisional
Probab=96.56 E-value=0.063 Score=46.47 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=70.6
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~ 94 (171)
.+||.|+|+..+. ..++.....+.|...||..++.... +++.+....+.+++... .+....++-++...
T Consensus 58 G~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-- 135 (418)
T PRK07369 58 GLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQG-- 135 (418)
T ss_pred CEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCC--
Confidence 4899999997643 3478888888899999988776542 24555555555554331 13333454443221
Q ss_pred CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
..++++.++. +..++++.+++.. .+.. .+.+-++.++ +.+.++.+|+-+..
T Consensus 136 --~~~~ei~~l~-~~Gv~~f~~~~~~-~~~~----~l~~~~~~~~-------------~~~~~v~~H~Ed~~ 186 (418)
T PRK07369 136 --KQLTELAELA-AAGVVGFTDGQPL-ENLA----LLRRLLEYLK-------------PLGKPVALWPCDRS 186 (418)
T ss_pred --ccHhhHHHHH-HCCCEEEECCCcC-CCHH----HHHHHHHHHH-------------hcCCeEEEecCChh
Confidence 2355555553 3346666543321 1222 3455557777 77888888886543
No 27
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=96.54 E-value=0.022 Score=47.24 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=27.6
Q ss_pred ceEeeccCCCCCCCCCC-------------HHHHHHHHHhcCCCEEEEeCCChhh
Q psy4673 24 VLIDVGANLTNRKFGRD-------------LESVVQRAKDSGVQKIIAIGSSLKS 65 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d-------------~~~vl~~a~~~gv~~~i~v~~~~~~ 65 (171)
.+||+|+|+.......+ ...-++.+...||..+..++.....
T Consensus 14 GliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~ 68 (342)
T cd01299 14 GLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYG 68 (342)
T ss_pred CeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchH
Confidence 49999999965321111 1134567788999998888765433
No 28
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=96.47 E-value=0.026 Score=50.64 Aligned_cols=106 Identities=17% Similarity=0.277 Sum_probs=60.2
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe---------CCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI---------GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v---------~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~ 94 (171)
.+||+|+|+..+.+ .+.|...||..++.- ...++.....++.++..|- -+|++-.-. .
T Consensus 134 G~ID~HVH~~~Pg~-------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pv----N~g~~gkG~-~- 200 (569)
T PRK13308 134 GAIDVHVHFDSAQL-------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPV----NFGFLGRGN-S- 200 (569)
T ss_pred CEEEeeeCCCCccH-------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCc----cEEEEcCCc-c-
Confidence 48999999976421 266778899988862 2334556666666665552 233332111 1
Q ss_pred CHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
...+.|.++++ ..+++++ ||.. +. ..+.+-|+.|. +++.|+.+|+.+.
T Consensus 201 --s~~aeL~eli~-aGA~GfKi~ed~g~---t~----~~i~~aL~~A~-------------~~dv~VaiHadtl 251 (569)
T PRK13308 201 --SKPAALIEQVE-AGACGLKIHEDWGA---MP----AAIDTCLEVAD-------------EYDFQVQLHTDTL 251 (569)
T ss_pred --cCHHHHHHHHH-CCCCEEeecCCCCC---CH----HHHHHHHHHHH-------------hcCCEEEEeCCCc
Confidence 12456666653 3466666 4321 21 35666778888 5555555555543
No 29
>PRK09059 dihydroorotase; Validated
Probab=96.47 E-value=0.075 Score=46.14 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=67.8
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~ 94 (171)
.+||+|+|+.... ..++++...+.+...||..++..... ++.+....+.++.. +-.+++..++.++...
T Consensus 61 G~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-- 138 (429)
T PRK09059 61 GLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAG-- 138 (429)
T ss_pred cEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCC--
Confidence 4999999996432 23566666777888899887765432 23455555555432 2124555666654322
Q ss_pred CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+.++++..+. +..++++-++.....+.. .+.+-++.++ +.+.|+++|+-+.+
T Consensus 139 --~~l~e~~~l~-~~Gv~~f~~~~~~~~~~~----~l~~~~~~~~-------------~~~~~v~~H~E~~~ 190 (429)
T PRK09059 139 --EEMTEFGLLR-AAGAVAFTDGRRSVANTQ----VMRRALTYAR-------------DFDAVIVHETRDPD 190 (429)
T ss_pred --cchHHHHHHH-hcCcEEEecCCcccCCHH----HHHHHHHHHH-------------hcCCEEEEecCChh
Confidence 2355555543 334555543221111222 3344446677 78888888876543
No 30
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=96.33 E-value=0.055 Score=46.55 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=63.7
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-C-h----hhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-S-L----KSSKEALRLARIYPG-MVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~-~----~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~ 94 (171)
.+||+|+|+.... ..+++......+...|+..++.... . + +.+....+.++.... .+....|+......
T Consensus 40 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~-- 117 (411)
T TIGR00857 40 GFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQG-- 117 (411)
T ss_pred CEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCcc--
Confidence 3999999997421 2245666667788899988776532 2 2 223333333332111 13344555443211
Q ss_pred CHHHHHHHHHHhccCCeEE--EecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 95 DEDYIDQLRDLVSNTGNST--MNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vva--IGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
..++++.++. ...+++ .+++.....+.. .+.+-++.|+ +++.|+.+|+-..
T Consensus 118 --~~l~e~~~l~-~~Gv~g~~f~~~~~~~~~~~----~l~~~~~~a~-------------~~g~~v~iH~E~~ 170 (411)
T TIGR00857 118 --KELTEAYELK-EAGAVGRMFTDDGSEVQDIL----SMRRALEYAA-------------IAGVPIALHAEDP 170 (411)
T ss_pred --ccHHHHHHHH-HCCcEEEEEEeCCcccCCHH----HHHHHHHHHH-------------HcCCEEEEecCCH
Confidence 2345555554 335666 554332112222 3344458888 7888888886544
No 31
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=96.29 E-value=0.045 Score=49.21 Aligned_cols=100 Identities=14% Similarity=0.200 Sum_probs=54.1
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh-------------hHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK-------------SSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~-------------~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+.. .+.|...||..++..++.|. ...+.++.++..|- -+|++--.
T Consensus 130 G~ID~HvH~~~P~~-------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pi----n~g~~g~g 198 (568)
T PRK13207 130 GGIDTHIHFICPQQ-------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPM----NIGFLGKG 198 (568)
T ss_pred CeEECccCCccccH-------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCc----eEEEEcCC
Confidence 48999999875421 36677889999888654431 13333333333331 23333211
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK 146 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~ 146 (171)
. ...++.|+++++ ..+++|. ||.. +. ..+.+-|+.|.+ .+||+.
T Consensus 199 ---~-~~~~~~L~e~i~-aGA~gfKi~~d~g~---t~----~~l~~aL~~A~~~gv~V~iHa~t 250 (568)
T PRK13207 199 ---N-ASLPEALEEQIE-AGAIGLKLHEDWGA---TP----AAIDNCLSVADEYDVQVAIHTDT 250 (568)
T ss_pred ---C-cccHHHHHHHHH-cCCCEEeecCCCCC---CH----HHHHHHHHHHHHhCCEEEEeCCC
Confidence 1 123566666653 3455666 5422 22 355666788884 466654
No 32
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=96.27 E-value=0.045 Score=44.93 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=59.1
Q ss_pred CccceEeeccCCCCCCC--------------CCCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhcCCcEEEE-
Q psy4673 21 DNYVLIDVGANLTNRKF--------------GRDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIYPGMVYST- 83 (171)
Q Consensus 21 ~~~~~iDtH~HL~~~~~--------------~~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~~~~v~~~- 83 (171)
.++++||||.|+.+... +-.+++.++.++..||.+.|.+- .++.+.+..++..++.++ ...+
T Consensus 5 ~~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~-~~g~~ 83 (279)
T COG3618 5 APQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAE-RHGGI 83 (279)
T ss_pred ccccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHH-hhCce
Confidence 45679999999987531 12578899999999999866554 456688777777666654 2222
Q ss_pred eeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Q psy4673 84 AGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN 115 (171)
Q Consensus 84 ~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG 115 (171)
+|+==...+ +..++|++.. ++.++||-
T Consensus 84 vg~id~~~~----e~~a~L~~~~-~~~~~GvR 110 (279)
T COG3618 84 VGVIDECRP----EFAAKLERAR-YPFFRGVR 110 (279)
T ss_pred EEEEecCCc----hHHHHHHHhc-ccccceee
Confidence 554332222 2566777765 77777765
No 33
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=96.18 E-value=0.13 Score=43.29 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHhcCCCEEEEeCC-Ch----hhHHHHHHHHHhcCCcE-EEEeeeCCCCCCCCCHHHHHHHHHHhccC-CeEEEe-c
Q psy4673 45 VQRAKDSGVQKIIAIGS-SL----KSSKEALRLARIYPGMV-YSTAGIHPHEAKSWDEDYIDQLRDLVSNT-GNSTMN-R 116 (171)
Q Consensus 45 l~~a~~~gv~~~i~v~~-~~----~~~~~~~~l~~~~~~~v-~~~~GiHP~~~~~~~~~~~~~l~~~l~~~-~vvaIG-D 116 (171)
+.++...||..+...+. .+ ..++...++.+.+...+ +...++.|..... .++..+.++++.+.. .+++ | +
T Consensus 102 ~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~g~~~~~-~~~ 179 (398)
T cd01293 102 LELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLS-TPGGEELMREALKMGADVVG-GIP 179 (398)
T ss_pred HHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccC-CCCHHHHHHHHHHhCCCEEe-CCC
Confidence 56678889876543221 11 23445555555554322 2223444432111 123344555555432 2332 3 4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhhh
Q psy4673 117 YNSSQWITEIKQTLFTTFVDITAL-----CEFCQKN 147 (171)
Q Consensus 117 y~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a 147 (171)
+.... ....+.|++-+++|++ .+|++..
T Consensus 180 ~~~~~---~~s~e~l~~~~~~A~~~g~~v~~H~~e~ 212 (398)
T cd01293 180 PAEID---EDGEESLDTLFELAQEHGLDIDLHLDET 212 (398)
T ss_pred CCcCC---ccHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 43211 2234567788899996 4666543
No 34
>PRK05985 cytosine deaminase; Provisional
Probab=96.04 E-value=0.22 Score=42.35 Aligned_cols=92 Identities=9% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHhcCCCEEE---E--eCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cC
Q psy4673 45 VQRAKDSGVQKII---A--IGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RY 117 (171)
Q Consensus 45 l~~a~~~gv~~~i---~--v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy 117 (171)
+.++...|+..+- . +...+..++..+++.+.+...+-.-+.-.|...........+.+++.++... -.+| +.
T Consensus 104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~-~~~gg~~p 182 (391)
T PRK05985 104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGA-DVVGGLDP 182 (391)
T ss_pred HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCC-CEEeCCCC
Confidence 4567788887642 2 2233456777777777765432222222232211111112344555554321 1233 32
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 118 NSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 118 ~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
+......+ +.+.+-+++|.+
T Consensus 183 ~~~~~~~~---~~l~~~~~~A~~ 202 (391)
T PRK05985 183 AGIDGDPE---GQLDIVFGLAER 202 (391)
T ss_pred CCcCCCHH---HHHHHHHHHHHH
Confidence 21111112 456666799995
No 35
>PRK07583 cytosine deaminase-like protein; Validated
Probab=96.04 E-value=0.09 Score=45.59 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHHhcCCC---EEEEeCC--ChhhHHHHHHHHHhcCCcE-EEE---eeeCCCCCCCCCHHHHHHHHHHhccC-CeEE
Q psy4673 44 VVQRAKDSGVQ---KIIAIGS--SLKSSKEALRLARIYPGMV-YST---AGIHPHEAKSWDEDYIDQLRDLVSNT-GNST 113 (171)
Q Consensus 44 vl~~a~~~gv~---~~i~v~~--~~~~~~~~~~l~~~~~~~v-~~~---~GiHP~~~~~~~~~~~~~l~~~l~~~-~vva 113 (171)
.++.|...|+. ..+.+.. .+..++.+.++.+.++..+ .-+ ++.|+.... ..++|.+.+... .+++
T Consensus 127 ~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~-----~~~eL~~~v~~~~gv~g 201 (438)
T PRK07583 127 GLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLTD-----AGERLADLVAEAGGLLG 201 (438)
T ss_pred HHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccCc-----hHHHHHHHHHHcCCEEe
Confidence 33445556765 3333321 1445666667777776542 122 444444322 225566655433 3444
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673 114 MNRYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK 146 (171)
Q Consensus 114 IGDy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~ 146 (171)
.-+|... . .+ +.+.+-+++|.+ .+||..
T Consensus 202 ~~~~~~~-~-~d---~~l~~i~~lA~~~G~~v~vH~~E 234 (438)
T PRK07583 202 GVTYMNP-D-LD---AQLDRLFRLARERGLDLDLHVDE 234 (438)
T ss_pred CCCCCCC-C-HH---HHHHHHHHHHHHhCCCcEEeECC
Confidence 1165432 1 12 346667789987 577743
No 36
>PRK10027 cryptic adenine deaminase; Provisional
Probab=96.04 E-value=0.042 Score=49.69 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=57.4
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe------CCChhhHHHHHHHHHhcCCcEEEEe-eeCCCCC---CC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI------GSSLKSSKEALRLARIYPGMVYSTA-GIHPHEA---KS 93 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v------~~~~~~~~~~~~l~~~~~~~v~~~~-GiHP~~~---~~ 93 (171)
.|||+|+|+..... ..+++.+.+-..|+..++.. -.+++..+..++.++.-|-.+|+.+ ..-|.-. ..
T Consensus 85 GlIDaHvHiess~~--~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~ 162 (588)
T PRK10027 85 GFIDAHLHIESSMM--TPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVN 162 (588)
T ss_pred CeEeccccCCcccC--CHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccC
Confidence 49999999986533 55677777788898776661 1244556666666666664444433 1122211 00
Q ss_pred CCHHHHHHHHHHhccCCeEEEe---cCCC
Q psy4673 94 WDEDYIDQLRDLVSNTGNSTMN---RYNS 119 (171)
Q Consensus 94 ~~~~~~~~l~~~l~~~~vvaIG---Dy~~ 119 (171)
-..-..+.+.+++..++|+|+| ||-.
T Consensus 163 Ga~~~~~~~~~~l~~~~v~glgEvMn~~~ 191 (588)
T PRK10027 163 GASFTLEQMLAWRDHPQVTGLAEMMDYPG 191 (588)
T ss_pred CCcCCHHHHHHHhcCCCceeEEeccCccc
Confidence 0012456777788899999999 6643
No 37
>PRK02382 dihydroorotase; Provisional
Probab=96.03 E-value=0.063 Score=46.66 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=64.1
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~ 95 (171)
.+||+|+|+.... ..++++...+.+...||..++.... +++.+....+.+++.. +..+|+|-....
T Consensus 55 G~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s---~v~~~~~~~~~~--- 128 (443)
T PRK02382 55 GGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKS---IVDFGINGGVTG--- 128 (443)
T ss_pred CEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCc---eEEEEEEeeecc---
Confidence 4999999987532 2356677777888899988775433 2334555455444322 334555422111
Q ss_pred HHHHHHHHHHhccCCeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 96 EDYIDQLRDLVSNTGNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 96 ~~~~~~l~~~l~~~~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
.++.+..+... .++++| .+........ -..+.+-++.|+ +.++|+.+|+-+.
T Consensus 129 --~~~~l~~l~~~-gv~~~gkv~~~~~~~~~~~~--~~~l~~~~~~a~-------------~~g~~v~~H~e~~ 184 (443)
T PRK02382 129 --NWDPLESLWER-GVFALGEIFMADSTGGMGID--EELFEEALAEAA-------------RLGVLATVHAEDE 184 (443)
T ss_pred --chhhHHHHHhc-CccceeEEEEEecCCCcccC--HHHHHHHHHHHH-------------hcCCeEEEecCCH
Confidence 23445555443 555554 1111111111 134556667787 7777777777654
No 38
>PLN02942 dihydropyrimidinase
Probab=96.02 E-value=0.094 Score=46.18 Aligned_cols=117 Identities=20% Similarity=0.126 Sum_probs=60.8
Q ss_pred ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCCC-----hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGSS-----LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~~-----~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~ 94 (171)
.+||+|+|+.... ..++...--..|-..|+..++..... .+..+...+.+.+.. .-+|+|.-.. .+
T Consensus 58 G~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~-~~ 132 (486)
T PLN02942 58 GGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC----MDYGFHMAIT-KW 132 (486)
T ss_pred CEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC----CCEEEEEEec-CC
Confidence 3999999997641 23455555566788899877665322 222333333333222 1234442111 12
Q ss_pred CHHHHHHHHHHhccCCeEEEe---cCCCCC-CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMN---RYNSSQ-WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIG---Dy~~~~-~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
.+..++++.++.....+.+++ .+.... .+. +.+.+-++.|+ +++.++.+|+
T Consensus 133 ~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~~~~----~~l~~~~~~a~-------------~~~~~v~~Ha 187 (486)
T PLN02942 133 DDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTD----ELLLEGFKRCK-------------SLGALAMVHA 187 (486)
T ss_pred cHhHHHHHHHHHHhCCCceEEEEEecCCCCCCCH----HHHHHHHHHHH-------------hcCCeEEEEc
Confidence 222355666665544555554 332111 122 24666678898 7777777774
No 39
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=95.98 E-value=0.098 Score=45.02 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=22.0
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI 59 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v 59 (171)
.+||+|+|++...+.+. ..+.+-..||..++..
T Consensus 54 G~iD~H~H~~~~~~~~~---~~~~a~~~GvTt~~~~ 86 (415)
T cd01297 54 GFIDVHTHYDGQVFWDP---DLRPSSRQGVTTVVLG 86 (415)
T ss_pred CEeeeeecCCcccccCc---chhhHHhCcEEEEEec
Confidence 49999999987443322 2344567789877763
No 40
>PRK13985 ureB urease subunit beta; Provisional
Probab=95.92 E-value=0.049 Score=48.85 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=60.5
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhH--HHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----------KSS--KEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~--~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+.. ...|...||..++..++.| ..| .+.++.++.+|- -+|++-.-
T Consensus 130 G~ID~HvH~~~P~~-------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pv----n~gf~gkG 198 (568)
T PRK13985 130 GGIDTHIHFISPQQ-------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM----NLGFLGKG 198 (568)
T ss_pred CEEEeeCCCCCccH-------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCc----cEEEecCC
Confidence 48999999865321 2457888999888744433 232 555665565552 24444211
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEecC-CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMNRY-NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy-~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
.. ..++.|+++++ ..+++++++ .|. .+.. .+.+-|+.|. +++.|+.+|+.+.+
T Consensus 199 ---~~-~~l~eL~el~~-aGA~GfK~~ed~g-~t~~----~I~~aL~vA~-------------~~dv~V~iHtdtln 252 (568)
T PRK13985 199 ---NS-SNDASLADQIE-AGAIGFKIHEDWG-TTPS----AINHALDVAD-------------KYDVQVAIHTDTLN 252 (568)
T ss_pred ---cc-CCHHHHHHHHH-cCCEEEEECCccC-CCHH----HHHHHHHHHH-------------HcCCEEEEeCCCCC
Confidence 11 23556666653 346666622 121 2222 4455568888 66666666666554
No 41
>PRK09357 pyrC dihydroorotase; Validated
Probab=95.91 E-value=0.3 Score=41.93 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=64.1
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGM-VYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~ 94 (171)
.+||+|+|+.... ..++.....+.+...||..++.... .+ +..+...+.++...-+ +++..++-.. ..
T Consensus 54 G~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 130 (423)
T PRK09357 54 GLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKG-LA-- 130 (423)
T ss_pred CEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeC-CC--
Confidence 4999999986421 2355666667778899988776542 22 3344444444433211 2222222211 11
Q ss_pred CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
...++++..+.. .++++++++.....+ .+.+.+-+++|+ +++.|+.+|+-..
T Consensus 131 -~~~~~~~~~l~~-~gv~~~~~~~~~~~~----~~~l~~~~~~a~-------------~~g~~v~iH~ee~ 182 (423)
T PRK09357 131 -GEELTEFGALKE-AGVVAFSDDGIPVQD----ARLMRRALEYAK-------------ALDLLIAQHCEDP 182 (423)
T ss_pred -CccHHHHHHHHh-CCcEEEECCCcccCC----HHHHHHHHHHHH-------------hcCCEEEEeCCCH
Confidence 123445555433 456666643211112 135666778998 7888888887654
No 42
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=95.89 E-value=0.06 Score=48.43 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=60.8
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-----------hhhH--HHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS-----------LKSS--KEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~-----------~~~~--~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+. ..+.|...||..++..|+. ...| .+.++.+++.+- -+|+++.-
T Consensus 129 GlIDtHvH~~~P~-------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~i----n~g~~g~g 197 (567)
T TIGR01792 129 GGIDTHVHYISPQ-------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPI----NFGFTGKG 197 (567)
T ss_pred CeEEeecCCCCcc-------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCc----cEEEEeCC
Confidence 4999999986532 2466778899888885542 1223 223344444442 25555421
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
.. ...+.|.++++ ..+++++ ||.- + -+.+.+-+++|. +++.|+.+|+-+.
T Consensus 198 ~~----~~~~~L~e~i~-aGa~gfK~h~~y~~---s----~e~L~~al~~A~-------------e~gv~V~iH~ET~ 250 (567)
T TIGR01792 198 SG----SGPAALIEQIE-AGACGLKVHEDWGA---T----PAAIDNALSVAD-------------EYDVQVAVHTDTL 250 (567)
T ss_pred cc----chHHHHHHHHH-cCCcEEEeCCCCCC---C----HHHHHHHHHHHH-------------HcCCEEEEeCCCc
Confidence 11 13455665554 3466777 4422 2 225666678999 7788888887443
No 43
>PRK09061 D-glutamate deacylase; Validated
Probab=95.83 E-value=0.17 Score=44.94 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhc---cCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhH-----HHHhhh
Q psy4673 96 EDYIDQLRDLVS---NTGNSTMN---RYNSSQWITEIKQTLFTTFVDITAL-----CEFCQK 146 (171)
Q Consensus 96 ~~~~~~l~~~l~---~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~ 146 (171)
.++++++.+++. +..+.+|+ +|... .+.+ .+.+-++.|++ .+|++.
T Consensus 165 ~~el~~m~~ll~~al~~Ga~gis~~~~y~p~-~~~~----eL~~l~~~A~~~g~~v~~H~e~ 221 (509)
T PRK09061 165 PAELAEILELLEQGLDEGALGIGIGAGYAPG-TGHK----EYLELARLAARAGVPTYTHVRY 221 (509)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEecCCccCCC-CCHH----HHHHHHHHHHHcCCEEEEEecC
Confidence 456777777765 45677776 45432 2223 24445588885 467775
No 44
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=95.80 E-value=0.078 Score=47.74 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=57.4
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhHH--HHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----------KSSK--EALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~~--~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+. ..+.|...||..++..++.+ ..|. +.++.++..| .-+|+|-.
T Consensus 136 G~ID~HVH~~~Pg-------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~p----vn~g~~g~- 203 (573)
T PRK13206 136 GAIDCHVHFICPQ-------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWP----VNVALLGK- 203 (573)
T ss_pred CEEeeeeccCCch-------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCc----eeEEEecC-
Confidence 4899999987542 12667788999888643332 2232 4444333333 22344321
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEecC-CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMNRY-NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy-~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
..... .+.|.+++ +..+++++++ .|. .+.. .+.+-++.|. +++.|+.+|+.+.+
T Consensus 204 g~~~~---~~~L~el~-~aGA~GfKi~~d~g-~t~~----~i~~aL~~A~-------------~~gv~V~iHadtln 258 (573)
T PRK13206 204 GNTVS---AEALWEQL-RGGAGGFKLHEDWG-STPA----AIDACLRVAD-------------AAGVQVALHSDTLN 258 (573)
T ss_pred cCcCC---HHHHHHHH-HCCCcEEeecCccC-CCHH----HHHHHHHHHH-------------HhCCEEEEECCCcc
Confidence 11222 33555554 3456777733 121 2222 4555568888 66666666665544
No 45
>PRK07627 dihydroorotase; Provisional
Probab=95.79 E-value=0.2 Score=43.39 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~ 95 (171)
.+||.|+|+..+. ..++++...+.|...||..++..... .+..+......+.... +.. ++++|-... ..
T Consensus 56 G~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g-~~ 132 (425)
T PRK07627 56 GLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQ-AHV-YPLGALTVG-LK 132 (425)
T ss_pred cEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCc-eeE-EEeCeEEcC-CC
Confidence 3899999996432 34678888888899999887754322 2223333333333222 222 334443221 12
Q ss_pred HHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 96 EDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 96 ~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
...++++.++.+ ..++++-++.+...+.. .+.+-++.++ +.+.++.+|+-+.
T Consensus 133 ~~~~~~i~~l~~-~G~~~fk~~~~~~~~~~----~l~~~~~~~~-------------~~~~~v~~H~E~~ 184 (425)
T PRK07627 133 GEVLTEMVELTE-AGCVGFSQANVPVVDTQ----VLLRALQYAS-------------TFGFTVWLRPLDA 184 (425)
T ss_pred ccCHHHHHHHHh-CCEEEEEcCCcccCCHH----HHHHHHHHHH-------------hcCCEEEEecCCh
Confidence 234666666543 34555555433222222 2444456677 7788888887764
No 46
>PRK13404 dihydropyrimidinase; Provisional
Probab=95.69 E-value=0.36 Score=42.46 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=65.8
Q ss_pred ceEeeccCCCCC-----CCCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCC
Q psy4673 24 VLIDVGANLTNR-----KFGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWD 95 (171)
Q Consensus 24 ~~iDtH~HL~~~-----~~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~ 95 (171)
.+||+|+|+... .+.+++......+...||..++..+.+ +....+.++.... .....+..+|+|-.-. ...
T Consensus 55 G~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~-~~~ 133 (477)
T PRK13404 55 GGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVA-DPT 133 (477)
T ss_pred CEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEec-CCC
Confidence 499999999542 234677777788889999988775432 2333333322211 1111234456663221 112
Q ss_pred HHHH-HHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 96 EDYI-DQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 96 ~~~~-~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
++.+ +++.++++. .+.+|. ++.....+. ..+.+-++.|. ++++++.+|+-+.
T Consensus 134 ~~~~~~~v~~l~~~-G~~~iKi~~~~~~~~~~~----~~l~~~~~~a~-------------~~g~~V~~Hae~~ 189 (477)
T PRK13404 134 EEVLTEELPALIAQ-GYTSFKVFMTYDDLKLDD----RQILDVLAVAR-------------RHGAMVMVHAENH 189 (477)
T ss_pred hhhHHHHHHHHHHc-CCCEEEEEecCCCCCCCH----HHHHHHHHHHH-------------hcCCEEEEEeCCH
Confidence 2233 466666543 333333 321111111 34556668888 7888888887653
No 47
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=95.69 E-value=0.2 Score=42.01 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=28.4
Q ss_pred ceEeeccCCCCCC---CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK---FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~---~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||.|+|+..+. ..++++.--+.|..-||..++...
T Consensus 6 G~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp 45 (337)
T cd01302 6 GFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP 45 (337)
T ss_pred CeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC
Confidence 4899999997644 336777777888889998877643
No 48
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=95.61 E-value=0.08 Score=47.73 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=59.3
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-------------hhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS-------------LKSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~-------------~~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+.+ ...|...||..++..+++ +..+.+.++.++..|-. +|++---
T Consensus 134 G~ID~HvH~~~P~~-------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn----~g~~gkg 202 (572)
T PRK13309 134 AGIDTHIHLISPQQ-------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVN----VGILGKG 202 (572)
T ss_pred CEEEeecccCCcch-------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcC----EEEEcCC
Confidence 48999999876432 246778899888853332 22455665656655522 3333111
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
.. ...+.|.+++ +..+++++ ||.. +.. .+.+-++.|. +++.++.+|+.+.+
T Consensus 203 ---~~-~~~~~l~el~-~aGa~gfk~~~d~g~---t~~----~L~~aLe~A~-------------~~gv~VaiH~d~ln 256 (572)
T PRK13309 203 ---NS-YGRGPLLEQA-IAGVAGYKVHEDWGA---TAA----ALRHALRVAD-------------EVDIQVAVHTDSLN 256 (572)
T ss_pred ---CC-CCHHHHHHHH-hcCcEEEEecCcCCc---CHH----HHHHHHHHHH-------------hcCCEEEEeCCccc
Confidence 11 1234455554 34566776 5422 222 4555568888 66666666666554
No 49
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=95.57 E-value=0.57 Score=39.90 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEE
Q psy4673 46 QRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYS 82 (171)
Q Consensus 46 ~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~ 82 (171)
.++-..|+..+...+. .+..+....+.+.+.+-+++.
T Consensus 97 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~ 134 (401)
T TIGR02967 97 DELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIA 134 (401)
T ss_pred HHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEE
Confidence 4677889988776553 344555566666665434433
No 50
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=95.45 E-value=0.28 Score=41.41 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|++.
T Consensus 57 Glid~H~Hl~~ 67 (411)
T cd01298 57 GLVNTHTHLAM 67 (411)
T ss_pred Cccccccchhh
Confidence 39999999963
No 51
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=95.44 E-value=0.27 Score=42.51 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.0
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+.... ..+++...-+.|...||..++...
T Consensus 53 G~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p 91 (447)
T cd01315 53 GLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMP 91 (447)
T ss_pred cEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCC
Confidence 3999999997532 234566666778889998887764
No 52
>PRK08392 hypothetical protein; Provisional
Probab=95.17 E-value=0.48 Score=37.15 Aligned_cols=113 Identities=11% Similarity=0.142 Sum_probs=60.8
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----hh----HHHHHHHHHhcCCcE----------------
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----KS----SKEALRLARIYPGMV---------------- 80 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----~~----~~~~~~l~~~~~~~v---------------- 80 (171)
||.|+|-....-...+++++++|.+.|+.. +.++-.. .+ +..+.++.+++.-.|
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~-i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~~~~~ 79 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRL-VGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDIT 79 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCE-EEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCCcchhH
Confidence 689999876433457899999999999975 4444321 12 222333333211001
Q ss_pred --------EEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 81 --------YSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 81 --------~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
|...++|-+......+...+.+.+.+..+.+--+| |+........ ..+.+.+-++.|.+
T Consensus 80 ~~~~~~~D~vI~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~-~~~~~~~i~~~~~~ 148 (215)
T PRK08392 80 DDFAKKLDYVIASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYP-SEEELKEILDLAEA 148 (215)
T ss_pred HHHHhhCCEEEEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCc-hHHHHHHHHHHHHH
Confidence 33456674322111234566666667677777788 7543211111 13445666777775
No 53
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=95.17 E-value=0.22 Score=42.99 Aligned_cols=120 Identities=24% Similarity=0.243 Sum_probs=60.8
Q ss_pred ceEeeccCCCCCC----CCCCHHHHHHHHHhcCCCEEEEeCC-Ch-hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673 24 VLIDVGANLTNRK----FGRDLESVVQRAKDSGVQKIIAIGS-SL-KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~~----~~~d~~~vl~~a~~~gv~~~i~v~~-~~-~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~ 96 (171)
.+||+|+|+.... ..++.....+.+...||..++.... .+ ....+.++..... ....+.-+|+|+... ...+
T Consensus 52 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~ 130 (447)
T cd01314 52 GGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIIT-DWTD 130 (447)
T ss_pred CEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeec-CCCh
Confidence 4999999996421 2244544456677789988777542 23 4444444332221 111223355664322 2223
Q ss_pred HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
+.++.+++++.. .+.+|. ..... ..+.+ .+.+-+++|+ ++++++.+|+
T Consensus 131 ~~~~~~~~l~~~-g~~~ik~~~~~~~~~~~s~~----~l~~~~~~a~-------------~~g~~v~~H~ 182 (447)
T cd01314 131 SVIEELPELVKK-GISSFKVFMAYKGLLMVDDE----ELLDVLKRAK-------------ELGALVMVHA 182 (447)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeccCCCCCCCHH----HHHHHHHHHH-------------hcCCeEEEEc
Confidence 456666666553 222222 11111 11222 4555668888 6677777775
No 54
>PRK08323 phenylhydantoinase; Validated
Probab=95.07 E-value=0.28 Score=42.48 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=63.0
Q ss_pred ceEeeccCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCCh--hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCH
Q psy4673 24 VLIDVGANLTNR----KFGRDLESVVQRAKDSGVQKIIAIGSSL--KSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~----~~~~d~~~vl~~a~~~gv~~~i~v~~~~--~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~ 96 (171)
.|||+|+|+... ...++.....+.+...||..++...... ......++..... ......-+|+|.... ....
T Consensus 50 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~ 128 (459)
T PRK08323 50 GGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIIT-DWNE 128 (459)
T ss_pred cEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEec-CCcH
Confidence 499999999642 1234555555677789999877654322 2333333322211 111234567764322 1233
Q ss_pred HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
+.++++++++... +.+|. .+... ..+.+ .+.+-++.|. +++.++.+|+-
T Consensus 129 ~~~~~~~~~~~~g-~~~ik~~~~~~~~~~~s~~----~l~~~~~~a~-------------~~g~~v~~H~e 181 (459)
T PRK08323 129 VVLDEMPELVEEG-ITSFKLFMAYKGALMLDDD----ELLRALQRAA-------------ELGALPMVHAE 181 (459)
T ss_pred HHHHHHHHHHHcC-CCEEEEEEecCCCCCCCHH----HHHHHHHHHH-------------hcCCEEEEEcC
Confidence 4567777776432 22332 32211 11222 2445568888 66777777753
No 55
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=94.87 E-value=0.31 Score=41.78 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=71.0
Q ss_pred ceEeeccCCCCC-CCC----CCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhc--CCcEEEEeeeC---CCCC
Q psy4673 24 VLIDVGANLTNR-KFG----RDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIY--PGMVYSTAGIH---PHEA 91 (171)
Q Consensus 24 ~~iDtH~HL~~~-~~~----~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~--~~~v~~~~GiH---P~~~ 91 (171)
.|||+|+|.... .+. ++++...+.+...||..++... ..++...+.++...++ ...-..-+|+| |...
T Consensus 57 GfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~ 136 (380)
T TIGR00221 57 GFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLS 136 (380)
T ss_pred ceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCC
Confidence 499999997531 121 4566777888889998766433 3345555554433221 10112357888 5433
Q ss_pred CC----CCHH-----HHHHHHHHhcc-C---CeEEEecCCCCCCcHHHHHHHHHHH-HHHhhHHHHhhhhhHhHh---hh
Q psy4673 92 KS----WDED-----YIDQLRDLVSN-T---GNSTMNRYNSSQWITEIKQTLFTTF-VDITALCEFCQKNFSRKE---HL 154 (171)
Q Consensus 92 ~~----~~~~-----~~~~l~~~l~~-~---~vvaIGDy~~~~~~~~~Q~~~F~~q-l~lA~~~iH~r~a~~~~~---~~ 154 (171)
.+ .+++ ..++++++++. . +++-+- .+......-.+.+..| +..+ +=|+--.|+++. +.
T Consensus 137 ~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlA---PE~~~~~~~i~~l~~~gi~vs--~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 137 PEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLA---PEEDQHFELIRHLKDAGIIVS--AGHTNATYELAKAAFKA 211 (380)
T ss_pred hhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEEC---CCCCChHHHHHHHHHCCeEEE--eeCCCCCHHHHHHHHHc
Confidence 32 1121 23556666542 2 122222 1111111122222111 1111 467776676653 55
Q ss_pred cCceEEEecCCCccc
Q psy4673 155 NRHLWVHKDSSMMKE 169 (171)
Q Consensus 155 ~~p~iiH~fsg~~~e 169 (171)
+...+-|.|+|...-
T Consensus 212 Ga~~~THlfNaM~~~ 226 (380)
T TIGR00221 212 GATHATHLYNAMSPI 226 (380)
T ss_pred CCCeeeeeccCCCCc
Confidence 667889999987643
No 56
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=94.87 E-value=0.53 Score=39.69 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=45.0
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHH-HHHhcCC--cEEEEeeeCCCCCCCCCH
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALR-LARIYPG--MVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~-l~~~~~~--~v~~~~GiHP~~~~~~~~ 96 (171)
-|.||||-.. .-++.++ -+-..||..++..... .+......+ ..+..+. .+.+..|++|+...
T Consensus 8 ~~~~~~~~~~---~~~~~~~-~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~~~---- 79 (341)
T TIGR00856 8 DDWHLHLRDG---AMLKAVL-PYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSL---- 79 (341)
T ss_pred cceeeeccCc---hHHHHHH-HHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCCCC----
Confidence 4899999652 2333333 3445579888876422 233333233 3445542 25567889985432
Q ss_pred HHHHHHHHHhccCCeEEEe
Q psy4673 97 DYIDQLRDLVSNTGNSTMN 115 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIG 115 (171)
.+++++++.+...+.|+=
T Consensus 80 -~~~Ei~~l~~~~Gv~g~K 97 (341)
T TIGR00856 80 -TPEELERAKNEGVVRAVK 97 (341)
T ss_pred -CHHHHHHHHHcCCeEEEE
Confidence 356677765554666654
No 57
>PLN02599 dihydroorotase
Probab=94.87 E-value=0.55 Score=40.07 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=49.2
Q ss_pred CCCCCCCcccccCCCCCCccceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC------CChhhHHHHHHHHHhc-
Q psy4673 4 SSSSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIG------SSLKSSKEALRLARIY- 76 (171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~------~~~~~~~~~~~l~~~~- 76 (171)
++|+...-|-|.++-.. --|.|+||-.. +-++.++ -.-..|+..++..- ++.+.++...+.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~----~~d~h~hlr~~---~~~~~~~-~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~ 82 (364)
T PLN02599 11 SISSASAAEGTELTITR----PDDWHLHLRDG---AKLAAVV-PHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKAL 82 (364)
T ss_pred cccccccCCCceEEecC----CcceeeEccCc---HHHHhhh-HHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhc
Confidence 45666666666654332 24999999752 2233333 34456888877743 2334454444433332
Q ss_pred C---CcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeE-EEe
Q psy4673 77 P---GMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS-TMN 115 (171)
Q Consensus 77 ~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vv-aIG 115 (171)
+ + +.+..|+++... ..+++|+++ .+..++ |+-
T Consensus 83 ~~~vd-f~~~~~l~lt~~-----~~l~Ei~~~-~~~Gvv~gfK 118 (364)
T PLN02599 83 PPGSS-FEPLMTLYLTDN-----TTPEEIKAA-KASGVVFAVK 118 (364)
T ss_pred CCCcc-eEEEEEEecCCC-----CCHHHHHHH-HHCCCcEEEE
Confidence 2 3 344445544332 134556655 333455 653
No 58
>PRK08417 dihydroorotase; Provisional
Probab=94.61 E-value=0.49 Score=40.41 Aligned_cols=116 Identities=14% Similarity=0.261 Sum_probs=63.8
Q ss_pred ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCC-Ch-----hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCH
Q psy4673 24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGS-SL-----KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~-~~-----~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~ 96 (171)
.+||.|+|+....+ .++++...+.|...||..++.... .| +.++...+.++..+..++...++- . .+
T Consensus 31 G~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~ 104 (386)
T PRK08417 31 ALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRAL-----D-ED 104 (386)
T ss_pred CeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEE-----C-CC
Confidence 48999999975322 356777778888899988877653 23 344444444443222122222211 1 11
Q ss_pred HHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 97 DYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
..++++..+.+ ..+.++-.++ ..+ ...|.+-++.|+ +.++|+++|+-+.
T Consensus 105 ~~~~~i~~l~~-~Gv~~~k~~~--~~~----~~~l~~~~~~a~-------------~~g~~V~~HaEd~ 153 (386)
T PRK08417 105 GKLSNIATLLK-KGAKALELSS--DLD----ANLLKVIAQYAK-------------MLDVPIFCRCEDS 153 (386)
T ss_pred ccHHHHHHHHH-CCCEEEECCC--CCC----HHHHHHHHHHHH-------------HcCCEEEEeCCCH
Confidence 23566666542 3444443211 111 224556667788 7788888887553
No 59
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=94.57 E-value=0.6 Score=40.28 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=59.4
Q ss_pred ceEeeccCCCCC---C-CCCCHHHHHHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCH
Q psy4673 24 VLIDVGANLTNR---K-FGRDLESVVQRAKDSGVQKIIAIGSS-L-KSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~---~-~~~d~~~vl~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~ 96 (171)
.+||+|+|+... . ..++.....+.+...||..++..... + .+....++.... ..+.-+.-+|+|... .....
T Consensus 52 GlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 130 (454)
T TIGR02033 52 GGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMI-THWND 130 (454)
T ss_pred CEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecc-cCCcH
Confidence 399999999643 1 12344444456677899988775533 2 233333332221 111123346777432 11222
Q ss_pred HHHHHHHHHhccCCeEEEe---cCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 97 DYIDQLRDLVSNTGNSTMN---RYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIG---Dy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
+.++...+++.+..+..|. .+... ..+. +.+.+-++.|+ ++++|+.+|+
T Consensus 131 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~----~~l~~~~~~a~-------------~~~~~v~~H~ 183 (454)
T TIGR02033 131 EVLEEHIPELVEEGITSFKVFMAYKNLLMVDD----EELFEILKRAK-------------ELGALLQVHA 183 (454)
T ss_pred HHHHHHHHHHHhcCCcEEEEEeecCCCCCCCH----HHHHHHHHHHH-------------hCCCeEEEEc
Confidence 3344433333333332332 22111 1122 24566668888 7777777775
No 60
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=94.57 E-value=0.23 Score=41.45 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCccceEeeccCCCCC--CC-------CC----CHHHH---HHHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcEE
Q psy4673 20 FDNYVLIDVGANLTNR--KF-------GR----DLESV---VQRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMVY 81 (171)
Q Consensus 20 ~~~~~~iDtH~HL~~~--~~-------~~----d~~~v---l~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v~ 81 (171)
++.+.++.+|=|+-.. .+ .+ +.+.. +++++++|+..+|.++.. . .+...+.+++++..-.|.
T Consensus 3 ~e~LG~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II 82 (308)
T PF02126_consen 3 PEELGFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNII 82 (308)
T ss_dssp GGGCSSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEE
T ss_pred hHHCCCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEE
Confidence 5667889999999641 11 11 33333 356788999988886652 2 345666777777664588
Q ss_pred EEeeeCCCCC-CCC-CHHHHHHHHHHh--------cc----CCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhh
Q psy4673 82 STAGIHPHEA-KSW-DEDYIDQLRDLV--------SN----TGNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQK 146 (171)
Q Consensus 82 ~~~GiHP~~~-~~~-~~~~~~~l~~~l--------~~----~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~ 146 (171)
.+.|+|...- +.+ .....++|.+++ .. +.++++| ++ ..-.+.++++|++-...++
T Consensus 83 ~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~---~~it~~E~k~lrAaa~A~~------- 152 (308)
T PF02126_consen 83 ASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS---NPITPLEEKVLRAAARAHK------- 152 (308)
T ss_dssp EEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT---TBCEHHHHHHHHHHHHHHH-------
T ss_pred EeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc---CCCCHHHHHHHHHHHHHHH-------
Confidence 9999986321 111 111223333322 11 3344433 65 2234668889999877777
Q ss_pred hhHhHhhhcCceEEEecCCC
Q psy4673 147 NFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 147 a~~~~~~~~~p~iiH~fsg~ 166 (171)
+.+.|+.+|+-.|.
T Consensus 153 ------~TG~pI~~H~~~g~ 166 (308)
T PF02126_consen 153 ------ETGAPISTHTGRGT 166 (308)
T ss_dssp ------HHT-EEEEEESTTG
T ss_pred ------HhCCeEEEcCCCCC
Confidence 78888888886665
No 61
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=94.36 E-value=0.21 Score=42.30 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=25.7
Q ss_pred ceEeeccCCCCCC----C-CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK----F-GRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~----~-~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+.... + ..+.+.....+...|+..++.+.
T Consensus 57 G~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~ 98 (388)
T PRK10657 57 GFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL 98 (388)
T ss_pred cceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC
Confidence 4999999986210 1 13455667888889998887655
No 62
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=94.36 E-value=0.35 Score=40.01 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=67.2
Q ss_pred HHHHHhcCCCEEEEeC-C---ChhhH------HHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEE
Q psy4673 45 VQRAKDSGVQKIIAIG-S---SLKSS------KEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTM 114 (171)
Q Consensus 45 l~~a~~~gv~~~i~v~-~---~~~~~------~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaI 114 (171)
+..++..|+..++..+ . ...+. +.+.+.+++||+++...+.+=|... +...+++++++.+.+++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~----~~a~~E~er~v~~~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDP----EAAAEELERRVRELGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCch----HHHHHHHHHHHHhcCceEE
Confidence 4667778887655552 1 12222 3577788899998777788777653 3578889999888888887
Q ss_pred e------cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 115 N------RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 115 G------Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
. ..+.+ + +. +....+.|. ++++|+.||+..+.
T Consensus 131 ~l~p~~~~~~~~--~---~~--~~pi~~~a~-------------~~gvpv~ihtG~~~ 168 (293)
T COG2159 131 KLHPVAQGFYPD--D---PR--LYPIYEAAE-------------ELGVPVVIHTGAGP 168 (293)
T ss_pred EecccccCCCCC--C---hH--HHHHHHHHH-------------HcCCCEEEEeCCCC
Confidence 7 22221 1 11 566678898 99999999988754
No 63
>PLN02303 urease
Probab=94.31 E-value=0.15 Score=47.73 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-------------ChhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-------------SLKSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-------------~~~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+||+|+|+..+.+ .+.+-..|+..++.-|+ +++.....++.++..|- -+|++-.-
T Consensus 399 G~ID~HVHf~~Pg~-------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pv----n~Gf~gkG 467 (837)
T PLN02303 399 GGIDCHVHFICPQL-------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPL----NFGFTGKG 467 (837)
T ss_pred CEEEeecCCCCCcH-------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCC----cEEEEccC
Confidence 48999999965432 13344445554444322 24455555555554442 22332211
Q ss_pred CCCCCHHHHHHHHHHhccCCeEEEecCC-CCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 91 AKSWDEDYIDQLRDLVSNTGNSTMNRYN-SSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~~~vvaIGDy~-~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
.. ..++.+.++++ ..++++.++. |. .+ ...+.+-++.|+ ++++|+.+|+-+
T Consensus 468 -~~---s~l~eL~elie-aGa~GfK~h~d~g-vT----pelL~raLe~Ak-------------elGVpVaIHAEd 519 (837)
T PLN02303 468 -NT---AKPEGLHEIIK-AGAMGLKLHEDWG-TT----PAAIDNCLDVAE-------------EYDIQVTIHTDT 519 (837)
T ss_pred -cc---cCHHHHHHHHH-cCcEEEEECCCCC-CC----HHHHHHHHHHHH-------------HcCCEEEEecCc
Confidence 11 23455555543 3566666331 21 12 336777789998 888888888544
No 64
>PRK09060 dihydroorotase; Validated
Probab=94.26 E-value=0.81 Score=39.84 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=28.0
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+.... ..+++....+.+...||..++...
T Consensus 57 G~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p 95 (444)
T PRK09060 57 GVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP 95 (444)
T ss_pred CEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC
Confidence 4999999986532 235777777888899998877753
No 65
>PRK08123 histidinol-phosphatase; Reviewed
Probab=93.91 E-value=0.27 Score=39.97 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=27.5
Q ss_pred cceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEE
Q psy4673 23 YVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIA 58 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~ 58 (171)
||++|.|+|.....- .+.+++.+++|.+.|+..+..
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~ 38 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITF 38 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence 567899999875422 246799999999999986433
No 66
>PRK09228 guanine deaminase; Provisional
Probab=93.88 E-value=2.3 Score=36.90 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=25.1
Q ss_pred HHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673 47 RAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIH 87 (171)
Q Consensus 47 ~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiH 87 (171)
++-..|+..++..++ .+..++...+.+++.+-+++.+.|+.
T Consensus 123 e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 123 ELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 456788887776543 35566666666666554455555553
No 67
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=93.76 E-value=2.8 Score=36.39 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=9.6
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|++.
T Consensus 60 GlVn~H~H~~~ 70 (451)
T PRK08203 60 GLVNTHHHFYQ 70 (451)
T ss_pred ceEeccccccc
Confidence 39999999975
No 68
>PRK06846 putative deaminase; Validated
Probab=93.58 E-value=2.3 Score=36.51 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=9.6
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|++.
T Consensus 68 g~iD~H~H~~~ 78 (410)
T PRK06846 68 AFREMHIHLDK 78 (410)
T ss_pred CEEeeeecccc
Confidence 49999999975
No 69
>PRK07328 histidinol-phosphatase; Provisional
Probab=93.54 E-value=0.44 Score=38.66 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=27.3
Q ss_pred cceEeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Q psy4673 23 YVLIDVGANLTNR-KFGRDLESVVQRAKDSGVQKII 57 (171)
Q Consensus 23 ~~~iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i 57 (171)
||++|.|+|-... .-...+++.+++|.+.|+..+.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~ 36 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIG 36 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Confidence 5789999998753 2235799999999999998543
No 70
>PRK06189 allantoinase; Provisional
Probab=93.50 E-value=0.94 Score=39.44 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=34.0
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC--C-----ChhhHHHHHHHHHh
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG--S-----SLKSSKEALRLARI 75 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~--~-----~~~~~~~~~~l~~~ 75 (171)
.+||+|+|+.... ..+++....+.+...||..++... + +++.+....++++.
T Consensus 55 G~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~ 115 (451)
T PRK06189 55 GMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQ 115 (451)
T ss_pred CEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCc
Confidence 4999999997632 235677777888889998777542 2 23445555555543
No 71
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=93.46 E-value=1 Score=39.11 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+.... ..+++....+.+...||..++...
T Consensus 52 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp 90 (443)
T TIGR03178 52 GVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMP 90 (443)
T ss_pred cEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECC
Confidence 4999999997532 234566666677888998877754
No 72
>PRK05451 dihydroorotase; Provisional
Probab=93.38 E-value=2.3 Score=35.75 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=38.3
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHH-HHHhcCC--cEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALR-LARIYPG--MVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~-l~~~~~~--~v~~~~GiHP~~~~~~ 94 (171)
.-||.|+||-.. .....++.-.+ +++..++.... +.+.++...+ +.++++. .+++..|++|... .
T Consensus 9 ~~~d~h~hl~~~---~~~~~~~~~~~-~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~~-~- 82 (345)
T PRK05451 9 RPDDWHLHLRDG---AMLKAVVPYTA-RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDN-T- 82 (345)
T ss_pred CcceEEEecCCc---hHHHHHHHHHH-HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCCC-C-
Confidence 358999999863 22223333333 45777666432 2233333333 3344332 2455677877632 1
Q ss_pred CHHHHHHHHHHhc
Q psy4673 95 DEDYIDQLRDLVS 107 (171)
Q Consensus 95 ~~~~~~~l~~~l~ 107 (171)
.+++|+++.+
T Consensus 83 ---~~~El~~~~~ 92 (345)
T PRK05451 83 ---DPDELERAKA 92 (345)
T ss_pred ---CHHHHHHHHH
Confidence 3456666543
No 73
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.13 E-value=1.4 Score=33.43 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--cCCeEEEe
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--NTGNSTMN 115 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~~~vvaIG 115 (171)
...+++.+...|. .+..+|.+++..+++.+ |.++||+ + -.+|.|+-+-. +++.+.+.+.++ .+.++-||
T Consensus 37 ~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~-l-~ivg~~~g~f~---~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 37 FPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPG-L-RIVGYHHGYFD---EEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCC-e-EEEEecCCCCC---hhhHHHHHHHHHHcCCCEEEEE
Confidence 5677888888876 57888999998887765 7788998 3 35787765432 233444444443 35555555
No 74
>PRK08044 allantoinase; Provisional
Probab=93.01 E-value=1.3 Score=38.64 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=36.2
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC--C-----ChhhHHHHHHHHHh
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG--S-----SLKSSKEALRLARI 75 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~--~-----~~~~~~~~~~l~~~ 75 (171)
.++|+|+|+.... ..+++....+.|...||..++..+ + +++.++...+.++.
T Consensus 54 g~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~ 114 (449)
T PRK08044 54 GMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKG 114 (449)
T ss_pred CeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhcc
Confidence 4899999997532 346788888999999999888765 2 34445555554443
No 75
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=92.81 E-value=1 Score=40.69 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=55.5
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh---------hHHHHHHHHHhcCCcEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK---------SSKEALRLARIYPGMVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~---------~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~ 94 (171)
.|||+|.|.-+..+ .+.++.+..-..|+..+|+ ||. -....++-+++-|-.+|..+ |..++.-
T Consensus 78 GfID~H~HIESSm~--tP~~FA~~Vlp~GtTtvV~---DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~---pScVPat 149 (584)
T COG1001 78 GFIDAHLHIESSML--TPSEFARAVLPHGTTTVVS---DPHEIANVLGEDGIRFMLDEAKETPLKVYVML---PSCVPAT 149 (584)
T ss_pred ceeecceecccccc--CHHHHHHHhhccCceEEee---CcHHHHhhccHHHHHHHHHHHhhCCeEEEEec---ccCccCC
Confidence 49999999887544 4555556566778766543 443 34455666677775455432 4444321
Q ss_pred ------CHHHHHHHHHHhccCCeEEEe---cCC
Q psy4673 95 ------DEDYIDQLRDLVSNTGNSTMN---RYN 118 (171)
Q Consensus 95 ------~~~~~~~l~~~l~~~~vvaIG---Dy~ 118 (171)
..-..+.+.+++..|+|+++| ||-
T Consensus 150 ~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~p 182 (584)
T COG1001 150 PFETSGAELTAEDIKELLEHPEVIGLGEMMNFP 182 (584)
T ss_pred ccccCCceecHHHHHHHhhCCCccchhhhcCCc
Confidence 112467888899999999999 664
No 76
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=92.71 E-value=1 Score=28.38 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=33.3
Q ss_pred eeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcC
Q psy4673 27 DVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYP 77 (171)
Q Consensus 27 DtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~ 77 (171)
|.|+|-.... -...+++++++|++.|+..+.+.-. +........++.++++
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~g 54 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAG 54 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcC
Confidence 6788876542 2347899999999999985433222 2444556666666654
No 77
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=92.39 E-value=1.6 Score=37.60 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=25.4
Q ss_pred cceEeeccCCCCC----CC-CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 23 YVLIDVGANLTNR----KF-GRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 23 ~~~iDtH~HL~~~----~~-~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
..|||+|+|+... .+ ....+.-+.++-.+||..++-.+
T Consensus 56 PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~ 98 (389)
T TIGR01975 56 PGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL 98 (389)
T ss_pred cCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc
Confidence 3499999998642 11 12344457788899998877543
No 78
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=92.31 E-value=1.7 Score=32.89 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEee-eCCCCC
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAG-IHPHEA 91 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~G-iHP~~~ 91 (171)
...+++.+...+. ++..+|..++..+++.+ +.++||+ +. .+| .||...
T Consensus 35 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~-l~-i~g~~~g~~~ 84 (171)
T cd06533 35 MPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPG-LK-IVGYHHGYFG 84 (171)
T ss_pred HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCC-cE-EEEecCCCCC
Confidence 5678888888776 57888999999888774 7888998 44 477 455543
No 79
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=92.24 E-value=3.9 Score=35.23 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=20.1
Q ss_pred HHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 47 RAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 47 ~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
++-..|+..++.....++ ...+.+...+-+.+.+.|...
T Consensus 107 e~l~~GvTtv~d~~~~~~---~~~~a~~~~G~r~~~~~~~~~ 145 (424)
T PRK08393 107 EMIKSGTTTFVDMYFHME---EVAKATLEVGLRGYLSYGMVD 145 (424)
T ss_pred HHHhcCceEEeccccCHH---HHHHHHHHhCCeEEEeceEec
Confidence 345678876665554443 333334443334555666544
No 80
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=92.02 E-value=1.4 Score=33.74 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCCC
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHEA 91 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~~ 91 (171)
...+++.+...|. ++..+|..++..+++.+ +.++||+. - .+|.|+...
T Consensus 37 ~~~l~~~~~~~~~-~vfllG~~~~v~~~~~~~l~~~yP~l-~-i~g~~g~f~ 85 (177)
T TIGR00696 37 MEELCQRAGKEKL-PIFLYGGKPDVLQQLKVKLIKEYPKL-K-IVGAFGPLE 85 (177)
T ss_pred HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCC-E-EEEECCCCC
Confidence 4678888888885 57888999998888766 67889983 3 356677653
No 81
>PRK06886 hypothetical protein; Validated
Probab=91.90 E-value=2.3 Score=35.81 Aligned_cols=93 Identities=8% Similarity=0.002 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCE---EEEe--CCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--c
Q psy4673 44 VVQRAKDSGVQK---IIAI--GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--R 116 (171)
Q Consensus 44 vl~~a~~~gv~~---~i~v--~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--D 116 (171)
.++.+-..|+.. -|.+ ...+..|+.++++.++|.+.+-.-+-.-|...-. .+...+.+++-+.... -|| +
T Consensus 74 ~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~-~~~~~~l~~~al~~ad--vvGGiP 150 (329)
T PRK06886 74 AIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI-EPTAKKWFDIGSEMVD--MIGGLP 150 (329)
T ss_pred HHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc-CccHHHHHHHHHHhCC--EEeCcc
Confidence 334455667653 2333 2246789999999999987533322223653221 1222344444333322 233 5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 117 YNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 117 y~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
+.-+. +...-.+.+.+-++||++
T Consensus 151 ~~~~~-~~~~~~e~l~~~~~lA~~ 173 (329)
T PRK06886 151 YRDEL-DYGRGLEAMDILLDTAKS 173 (329)
T ss_pred CCcCC-CCCCCHHHHHHHHHHHHH
Confidence 54211 111122345555799996
No 82
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=91.85 E-value=7.8 Score=33.48 Aligned_cols=41 Identities=7% Similarity=-0.043 Sum_probs=22.3
Q ss_pred HHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673 46 QRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 46 ~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
.++-..|+..+...+. .++.++...+.+...+-+++.+.+.
T Consensus 118 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 159 (429)
T cd01303 118 DELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVC 159 (429)
T ss_pred HHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeee
Confidence 3456778877765443 2445556665555544344444443
No 83
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=91.69 E-value=0.29 Score=38.98 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=27.2
Q ss_pred cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673 23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA 58 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~ 58 (171)
||++|.|+|-... -...+++++++|.+.|++.+..
T Consensus 1 ~m~~DlHvHt~~d-~~~~~~e~i~~A~~~Gl~~i~i 35 (237)
T PRK00912 1 MKFYDLNVHAVPD-GYDTVLRLISEASHLGYSGIAL 35 (237)
T ss_pred CCceEeccCCCCC-CcchHHHHHHHHHHCCCCEEEE
Confidence 6789999998422 2457899999999999986433
No 84
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=91.67 E-value=4.9 Score=31.82 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=63.8
Q ss_pred HHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEee-----------------eCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673 48 AKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG-----------------IHPHEAKSWDEDYIDQLRDLVSNTG 110 (171)
Q Consensus 48 a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~G-----------------iHP~~~~~~~~~~~~~l~~~l~~~~ 110 (171)
..+.|+.++-+++.+|......+. +|...+.+.-| .||+...... .++....-+...+
T Consensus 55 ~~~yg~~gv~i~~~np~~l~~~V~---k~~~~vv~V~GGd~~vNR~AvE~~VDVL~~P~~~Rkd~--g~dHVLAKlAa~n 129 (216)
T PRK03892 55 KKEYGKVAILLVTPKPSLIREVKQ---RFLNYLIYVQGGDLRVNRYAIERGVDAIISPWVGRKDP--GIDHVLARMAAKR 129 (216)
T ss_pred HHhcCcceEEEecCCHHHHHHHHH---hccceEEEEECCcHHHHHHHHhcccceeecccccCcCC--CccHHHHHHHHHc
Confidence 456778888888888887666553 44322333444 6887643211 2322222222344
Q ss_pred eEEEe-cCCC---C-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCcccc
Q psy4673 111 NSTMN-RYNS---S-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKEL 170 (171)
Q Consensus 111 vvaIG-Dy~~---~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~el 170 (171)
=|||+ |+.. . ...+..=...|++-++|++ +++.|++|=+...|.-++
T Consensus 130 ~VAIe~~L~plL~~~G~~Rar~L~~~r~~l~L~r-------------KYd~P~VISS~A~s~~~l 181 (216)
T PRK03892 130 GVAIGFSLSPLLRANPYERANILRFMMKAWQLVN-------------KYKVPRFITSSAESKWEV 181 (216)
T ss_pred CeEEEEecHHHHhhCchhHHHHHHHHHHHHHHHH-------------HcCCCEEEecCcchhccC
Confidence 58888 6532 2 2233434678999999999 999999998877766554
No 85
>PRK06380 metal-dependent hydrolase; Provisional
Probab=91.66 E-value=7.8 Score=33.16 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=10.0
Q ss_pred ceEeeccCCCCC
Q psy4673 24 VLIDVGANLTNR 35 (171)
Q Consensus 24 ~~iDtH~HL~~~ 35 (171)
.|||+|+|++..
T Consensus 55 G~Vd~H~Hl~~~ 66 (418)
T PRK06380 55 GLINTHAHVGMT 66 (418)
T ss_pred CEEeeccCCCcc
Confidence 499999999853
No 86
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.57 E-value=2.8 Score=35.73 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 125 EIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 125 ~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
..+.+.|++..++|+ ++++|+.+|...
T Consensus 159 ~~s~e~l~~~~~lA~-------------~~g~~i~~Hl~E 185 (381)
T cd01312 159 SVHPELAQDLIDLAK-------------KLNLPLSTHFLE 185 (381)
T ss_pred ccCHHHHHHHHHHHH-------------HcCCeEEEEecC
Confidence 345678899999999 888888888653
No 87
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=91.53 E-value=7 Score=33.72 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=9.5
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|+..
T Consensus 57 GlId~H~H~~~ 67 (445)
T PRK07228 57 GLIQGHIHLCQ 67 (445)
T ss_pred CEEecccCCcc
Confidence 49999999975
No 88
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=91.39 E-value=1.1 Score=33.01 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=31.7
Q ss_pred EeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673 26 IDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY 76 (171)
Q Consensus 26 iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~ 76 (171)
||.|||-... .-...+++++++|.+.|++.+ +++- +...+....+.+++.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i-~iTDH~~~~~~~~~~~~~~~~ 54 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAI-AITDHNNFAGYPDFYKEAKKK 54 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEE-EEEEETTTTTHHHHHHHHHHT
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEE-EEcCCcccccchHHHHHHHhc
Confidence 7999998765 223489999999999999854 3333 344455555555543
No 89
>PRK07572 cytosine deaminase; Validated
Probab=91.36 E-value=5.9 Score=34.18 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=9.5
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|++.
T Consensus 52 G~id~h~h~~~ 62 (426)
T PRK07572 52 PFVDPHFHMDA 62 (426)
T ss_pred cceehhhCcch
Confidence 49999999974
No 90
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=91.31 E-value=1.4 Score=37.20 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=39.4
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIH 87 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiH 87 (171)
.+||.|+|+..+. ..+|++.--..|..-||..++.... +.+.++...+.+++.. +.-+++|
T Consensus 7 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s---~vd~~~~ 75 (344)
T cd01316 7 GLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKA---RCDYAFS 75 (344)
T ss_pred CeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCc---EEeEEEE
Confidence 4899999997632 4567888888888899988877532 2344555555554432 2335555
No 91
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=91.26 E-value=7.5 Score=32.14 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=62.1
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S-- 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~-- 93 (171)
..=.|||+. .+.+. +.+|-+.|...++.=|... +..+++.+++..+.-.|=.=+|.=+-.-. .
T Consensus 79 PV~lHLDHg---~~~e~-i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~ 154 (285)
T PRK07709 79 PVAIHLDHG---SSFEK-CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVI 154 (285)
T ss_pred cEEEECCCC---CCHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccccc
Confidence 344799985 35544 4578888998755544432 22344455566553213233333321111 1
Q ss_pred CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 94 WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 94 ~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
++ .-++..++++.. -.++|| -|-. . ...+.+.++ ++++ .++.|+++|+-||
T Consensus 155 yT--~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~-~--p~L~~~~L~---~I~~-------------~~~iPLVLHGgSG 213 (285)
T PRK07709 155 YA--DPAECKHLVEATGIDCLAPALGSVHGPYKG-E--PNLGFAEME---QVRD-------------FTGVPLVLHGGTG 213 (285)
T ss_pred CC--CHHHHHHHHHHhCCCEEEEeecccccCcCC-C--CccCHHHHH---HHHH-------------HHCCCEEEeCCCC
Confidence 22 223334444332 245788 3322 1 233444443 3566 7789999999999
Q ss_pred Cccc
Q psy4673 166 MMKE 169 (171)
Q Consensus 166 ~~~e 169 (171)
.++|
T Consensus 214 ~~~e 217 (285)
T PRK07709 214 IPTA 217 (285)
T ss_pred CCHH
Confidence 9876
No 92
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.14 E-value=5.8 Score=32.82 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=61.4
Q ss_pred eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--C
Q psy4673 28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S--W 94 (171)
Q Consensus 28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~--~ 94 (171)
.=.|||+. .+++. +.+|-+.|...++.=++.. +...++.+++..+.-.|=.=+|.=+-.-. . +
T Consensus 80 V~lHLDHg---~~~e~-i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~y 155 (286)
T PRK08610 80 VAIHLDHG---SSFEK-CKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIY 155 (286)
T ss_pred EEEECCCC---CCHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCccccc
Confidence 44799985 35544 4678888998755545432 22344455566553223233333321110 1 2
Q ss_pred CHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 95 DEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+ .-++..++++.. -.|+|| -| ...+ ....+.+ =+++. .++.|+++|+-||.
T Consensus 156 T--~peea~~Fv~~TgvD~LAvaiGt~HG~Y-~~~p--~Ld~~~L---~~I~~-------------~~~vPLVLHGgSG~ 214 (286)
T PRK08610 156 A--DPKECQELVEKTGIDALAPALGSVHGPY-KGEP--KLGFKEM---EEIGL-------------STGLPLVLHGGTGI 214 (286)
T ss_pred C--CHHHHHHHHHHHCCCEEEeecccccccc-CCCC--CCCHHHH---HHHHH-------------HHCCCEEEeCCCCC
Confidence 2 233344444432 245788 33 2212 2232233 34556 67899999999999
Q ss_pred ccc
Q psy4673 167 MKE 169 (171)
Q Consensus 167 ~~e 169 (171)
++|
T Consensus 215 ~~e 217 (286)
T PRK08610 215 PTK 217 (286)
T ss_pred CHH
Confidence 876
No 93
>PRK05588 histidinol-phosphatase; Provisional
Probab=91.12 E-value=2.4 Score=34.01 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred eEeeccCCCCC-CCCCCHHHHHHHHHhcCCCE
Q psy4673 25 LIDVGANLTNR-KFGRDLESVVQRAKDSGVQK 55 (171)
Q Consensus 25 ~iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~ 55 (171)
++|.|+|.... .-....++.+++|.+.|+..
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~ 32 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGI 32 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCE
Confidence 47999998754 22357899999999999984
No 94
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=91.01 E-value=4.7 Score=34.87 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=8.8
Q ss_pred ceEeeccCCC
Q psy4673 24 VLIDVGANLT 33 (171)
Q Consensus 24 ~~iDtH~HL~ 33 (171)
.|||+|+|+.
T Consensus 60 GfID~H~H~~ 69 (442)
T PRK07203 60 GLINSHNHIY 69 (442)
T ss_pred ceeeccccch
Confidence 3999999986
No 95
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=90.99 E-value=7.6 Score=33.54 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=9.5
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|++.
T Consensus 56 G~vd~H~H~~~ 66 (430)
T PRK06038 56 GLVNTHTHAAM 66 (430)
T ss_pred CeeecccCcch
Confidence 39999999974
No 96
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.98 E-value=0.19 Score=39.93 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=25.6
Q ss_pred eEeeccCCCCCCC-----CCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673 25 LIDVGANLTNRKF-----GRDLESVVQRAKDSGVQKIIAIGS 61 (171)
Q Consensus 25 ~iDtH~HL~~~~~-----~~d~~~vl~~a~~~gv~~~i~v~~ 61 (171)
+||.|||+-..-- .++.-.+++.|.++||..||+.+-
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 5899999854211 123445678899999999877553
No 97
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.73 E-value=5.9 Score=32.79 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=62.9
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-----C--
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-----S-- 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-----~-- 93 (171)
..=.|||+. .+.+ .+.+|-+.|...++.=+... +..+++.+++..+.-.|=.=+|-=+-.-. .
T Consensus 76 PValHLDHg---~~~e-~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~ 151 (286)
T PRK12738 76 PLALHLDHH---ESLD-DIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAES 151 (286)
T ss_pred CEEEECCCC---CCHH-HHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccch
Confidence 455899985 3555 56668888998755544432 22344455565553112222332221100 0
Q ss_pred --CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 94 --WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 94 --~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
++ .-++..++++.. -.|+|| -|-. . ...+ |.+.=++.+ ..+.|+++|+-
T Consensus 152 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~--p~Ld---fd~l~~I~~-------------~~~vPLVLHGg 210 (286)
T PRK12738 152 AFLT--DPQEAKRFVELTGVDSLAVAIGTAHGLYSK-T--PKID---FQRLAEIRE-------------VVDVPLVLHGA 210 (286)
T ss_pred hcCC--CHHHHHHHHHHhCCCEEEeccCcccCCCCC-C--CcCC---HHHHHHHHH-------------HhCCCEEEeCC
Confidence 21 223344444432 245788 3321 1 2233 445556677 77899999999
Q ss_pred CCCccc
Q psy4673 164 SSMMKE 169 (171)
Q Consensus 164 sg~~~e 169 (171)
||.++|
T Consensus 211 SG~~~e 216 (286)
T PRK12738 211 SDVPDE 216 (286)
T ss_pred CCCCHH
Confidence 999876
No 98
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=90.44 E-value=2 Score=36.40 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=35.9
Q ss_pred ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHh
Q psy4673 24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARI 75 (171)
Q Consensus 24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~ 75 (171)
.+||.|+|+..+ ...+|++.--+.|..-||..++..-. +++.++...+.+++
T Consensus 7 G~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~ 66 (361)
T cd01318 7 GVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAA 66 (361)
T ss_pred CeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhcc
Confidence 489999999763 24578888888889999988776432 23455555555443
No 99
>PRK09248 putative hydrolase; Validated
Probab=90.27 E-value=1.9 Score=34.41 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEE
Q psy4673 24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQKIIA 58 (171)
Q Consensus 24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~ 58 (171)
+++|.|+|-..... ...+++++++|.+.|+..+..
T Consensus 3 ~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~i 38 (246)
T PRK09248 3 YPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAI 38 (246)
T ss_pred cceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence 47899999876422 247999999999999986444
No 100
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=90.24 E-value=4.9 Score=33.01 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=60.2
Q ss_pred eeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCChh--------------hHHHHHHHHHh-cCCcEEEEeeeCCCC
Q psy4673 27 DVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSLK--------------SSKEALRLARI-YPGMVYSTAGIHPHE 90 (171)
Q Consensus 27 DtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~~--------------~~~~~~~l~~~-~~~~v~~~~GiHP~~ 90 (171)
++=.|+..... ...+.+.+.++...||+.+++++.|+. ....++++.++ ++..+..+++.+|..
T Consensus 61 ~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~ 140 (281)
T TIGR00677 61 ETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEG 140 (281)
T ss_pred CeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCC
Confidence 44478876433 235777888899999999998888761 12233444433 443367788899965
Q ss_pred CCCCC--HHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 91 AKSWD--EDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 91 ~~~~~--~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
-.+.. +.+++.|.+-+ .-| ||.-.+.-.+. +.|.+.++.++
T Consensus 141 Hp~~~~~~~d~~~L~~Ki------~aGA~f~iTQ~~Fd~--~~~~~f~~~~~ 184 (281)
T TIGR00677 141 HPEAESVELDLKYLKEKV------DAGADFIITQLFYDV--DNFLKFVNDCR 184 (281)
T ss_pred CCCCCCHHHHHHHHHHHH------HcCCCEeeccceecH--HHHHHHHHHHH
Confidence 33322 22344554432 257 87654332222 34555555555
No 101
>PRK08204 hypothetical protein; Provisional
Probab=89.73 E-value=12 Score=32.19 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=24.2
Q ss_pred HHHHHHHHhhH-----HHHhh------h--hhHhHhhhcC----ceEEEecCCCcccc
Q psy4673 130 LFTTFVDITAL-----CEFCQ------K--NFSRKEHLNR----HLWVHKDSSMMKEL 170 (171)
Q Consensus 130 ~F~~ql~lA~~-----~iH~r------~--a~~~~~~~~~----p~iiH~fsg~~~el 170 (171)
.+.+.+++|.+ .+|+- . +.+.+.+.+. ..+.|+...+.+++
T Consensus 202 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~ 259 (449)
T PRK08204 202 VARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDEL 259 (449)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHH
Confidence 45566688887 57872 1 2333444332 36889887776553
No 102
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=89.66 E-value=1.4 Score=35.23 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEEEEee
Q psy4673 47 RAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 47 ~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
++-..|+..++..+.. ++..+.+.+.++..+.+++..++
T Consensus 60 e~l~~GtTt~~d~~~~~~~~~~a~~~a~~~~g~r~~~~~~ 99 (263)
T cd01305 60 DMRETGIGAFADFREGGVEGIELLRRALGKLPVPFEVILG 99 (263)
T ss_pred HHHhcCCeEEEEccCcchhHHHHHHHHHHhcCCCceEEec
Confidence 4567788776665433 44555666666666544333444
No 103
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=89.63 E-value=9.9 Score=32.57 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred ceEeeccCCCCC-CCC--------CCHHHHHHHHHhcCCCEEEEeC--CChhhHHHHHHHHHhc-CCcEEEEeeeC---C
Q psy4673 24 VLIDVGANLTNR-KFG--------RDLESVVQRAKDSGVQKIIAIG--SSLKSSKEALRLARIY-PGMVYSTAGIH---P 88 (171)
Q Consensus 24 ~~iDtH~HL~~~-~~~--------~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~~~l~~~~-~~~v~~~~GiH---P 88 (171)
.+||+|+|.... .|. ++++.+.+.+...||..++-.. ..++...++++..+++ ...-..-+|+| |
T Consensus 54 G~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGP 133 (382)
T PRK11170 54 GFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGP 133 (382)
T ss_pred ceeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence 499999996421 111 2344444556788998766322 2345555554433321 11113357888 4
Q ss_pred CCCCC----CCHH-----HHHHHHHHhccCC-eEEEecCCCCCCcHHHHHHHHHHHHHHhhH------HHHhhhhhHhHh
Q psy4673 89 HEAKS----WDED-----YIDQLRDLVSNTG-NSTMNRYNSSQWITEIKQTLFTTFVDITAL------CEFCQKNFSRKE 152 (171)
Q Consensus 89 ~~~~~----~~~~-----~~~~l~~~l~~~~-vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~------~iH~r~a~~~~~ 152 (171)
+.... .+++ ..+.++.+++... +.-|- .-.+... . + | ++.+.+ +=|+--.+++..
T Consensus 134 fi~~~~~Gah~~~~~~~p~~~~~~~~~~~~~~i~~iT-lAPE~~~---~-~-~---i~~l~~~gi~vs~GHs~A~~~~~~ 204 (382)
T PRK11170 134 YLNLVKKGTHNPEFIRKPDAEMVDFLCENADVITKVT-LAPEMVD---A-E-V---IRKLVEAGIVVSAGHSNATYEEAK 204 (382)
T ss_pred CCCcccCCCCCHHHhcCcCHHHHHHHHhccCCEEEEE-ECCCCCc---H-H-H---HHHHHHCCcEEEeeCCcCCHHHHH
Confidence 43332 1222 1345555554322 22221 1111111 1 1 2 222222 467765566543
Q ss_pred ---hhcCceEEEecCCCccc
Q psy4673 153 ---HLNRHLWVHKDSSMMKE 169 (171)
Q Consensus 153 ---~~~~p~iiH~fsg~~~e 169 (171)
+.+...+-|.|+|...-
T Consensus 205 ~a~~~Ga~~~THlfNaM~~~ 224 (382)
T PRK11170 205 AGFRAGITFATHLYNAMPYI 224 (382)
T ss_pred HHHHcCCCEEeeccccCCcc
Confidence 55667889999987643
No 104
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=89.42 E-value=8.4 Score=32.25 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=72.4
Q ss_pred CCCccceEeeccCCCCCC-----------CC--CCHHHHH---HHHHhcCCCEEEEeCCC-h-hhHHHHHHHHHhcCCcE
Q psy4673 19 CFDNYVLIDVGANLTNRK-----------FG--RDLESVV---QRAKDSGVQKIIAIGSS-L-KSSKEALRLARIYPGMV 80 (171)
Q Consensus 19 ~~~~~~~iDtH~HL~~~~-----------~~--~d~~~vl---~~a~~~gv~~~i~v~~~-~-~~~~~~~~l~~~~~~~v 80 (171)
.++.+.+..+|=||-... +. .....++ .+....|+..+|.++.. . .+-.++.++++.-.-.|
T Consensus 12 a~~~lGvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnI 91 (316)
T COG1735 12 APADLGVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNI 91 (316)
T ss_pred CHHHccceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcE
Confidence 456678899999986431 11 1122233 33445799988876642 1 34556666666655346
Q ss_pred EEEeeeC-----CCCCCCCCHHHHH-HHHHHhc----cC----CeEE-EecCCCCCCcHHHHHHHHHHHHHHhhHHHHhh
Q psy4673 81 YSTAGIH-----PHEAKSWDEDYID-QLRDLVS----NT----GNST-MNRYNSSQWITEIKQTLFTTFVDITALCEFCQ 145 (171)
Q Consensus 81 ~~~~GiH-----P~~~~~~~~~~~~-~l~~~l~----~~----~vva-IGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r 145 (171)
..+.|++ |.+....+.+.+. .+.+-++ .+ .+++ +|++-- -....+++|+.-.+.++
T Consensus 92 V~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~---iTp~Eek~lrAaA~A~~------ 162 (316)
T COG1735 92 VAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPA---ITPLEEKSLRAAARAHK------ 162 (316)
T ss_pred EEeccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceeeeccCccc---CCHHHHHHHHHHHHHhh------
Confidence 7777765 5444333322222 2222222 22 2332 224322 22445678887777676
Q ss_pred hhhHhHhhhcCceEEEecCCC
Q psy4673 146 KNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 146 ~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+.+.|++.|+.-|.
T Consensus 163 -------~Tg~Pi~tHt~~gt 176 (316)
T COG1735 163 -------ETGAPISTHTPAGT 176 (316)
T ss_pred -------hcCCCeEEeccchh
Confidence 77889999987765
No 105
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=89.40 E-value=7.8 Score=32.00 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=61.8
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~ 93 (171)
..=.|||+. .+. +.+.+|-+.|...++.=++.. +...++.+++..+.-.|=.=+|-=+-.-. .
T Consensus 74 PValHLDHg---~~~-e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~ 149 (282)
T TIGR01858 74 PLALHLDHH---ESL-DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEED 149 (282)
T ss_pred CEEEECCCC---CCH-HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccch
Confidence 345799985 244 556888888998755544431 22344455566554213223333221100 0
Q ss_pred --CCHHHHHHHHHHhccCC----eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 94 --WDEDYIDQLRDLVSNTG----NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 94 --~~~~~~~~l~~~l~~~~----vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
++ .-++..++++... .++|| =.|... ...+.+.+ =++.. .++.|+++|+-|
T Consensus 150 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~--p~Ldf~~L---~~I~~-------------~~~iPLVlHGgS 209 (282)
T TIGR01858 150 ALYT--DPQEAKEFVEATGVDSLAVAIGTAHGLYKKT--PKLDFDRL---AEIRE-------------VVDVPLVLHGAS 209 (282)
T ss_pred hccC--CHHHHHHHHHHHCcCEEecccCccccCcCCC--CccCHHHH---HHHHH-------------HhCCCeEEecCC
Confidence 11 1234444444332 45688 222221 13333333 34555 678999999999
Q ss_pred CCccc
Q psy4673 165 SMMKE 169 (171)
Q Consensus 165 g~~~e 169 (171)
|.++|
T Consensus 210 G~~~e 214 (282)
T TIGR01858 210 DVPDE 214 (282)
T ss_pred CCCHH
Confidence 98876
No 106
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=89.31 E-value=1.2 Score=37.40 Aligned_cols=135 Identities=12% Similarity=0.012 Sum_probs=69.8
Q ss_pred cceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHh-cCCcEEEEeeeCCCCC----CCC
Q psy4673 23 YVLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARI-YPGMVYSTAGIHPHEA----KSW 94 (171)
Q Consensus 23 ~~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~----~~~ 94 (171)
..+||.|.|.... .+.-+++.+ +...||..+|.-|.. ..++..-+++.-. ...+|++.+-+-|--. ..+
T Consensus 57 pG~iDlHvHvy~ggt~~~v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~ 133 (386)
T COG3964 57 PGLIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELY 133 (386)
T ss_pred cCeeeeeeEEecCCCccCcCHHHc---cccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcceeeehhhC
Confidence 3589999999863 333445443 346799888876652 3344333332211 1123566565555211 111
Q ss_pred CH--HHHHHHHHHhcc-C-CeEEEe------cCC-CCCCcHHHHHHHHHHHHHHhhH-----HHHhhh---hhHhHhhhc
Q psy4673 95 DE--DYIDQLRDLVSN-T-GNSTMN------RYN-SSQWITEIKQTLFTTFVDITAL-----CEFCQK---NFSRKEHLN 155 (171)
Q Consensus 95 ~~--~~~~~l~~~l~~-~-~vvaIG------Dy~-~~~~~~~~Q~~~F~~ql~lA~~-----~iH~r~---a~~~~~~~~ 155 (171)
+. -+.+++.++..+ + -+||+- |.. |.-.+ +..-+++|.. ++|.-. -++|+++.-
T Consensus 134 d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitP-------l~la~~ia~~~klPlmvHigePp~~~dEvlerL 206 (386)
T COG3964 134 DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITP-------LTLALRIANDLKLPLMVHIGEPPVLMDEVLERL 206 (386)
T ss_pred ChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCch-------HHHHHHHHhhcCCceEEecCCCCccHHHHHHhc
Confidence 11 123444444443 2 244433 221 11112 2333556665 566655 367888776
Q ss_pred Cc--eEEEecCCCc
Q psy4673 156 RH--LWVHKDSSMM 167 (171)
Q Consensus 156 ~p--~iiH~fsg~~ 167 (171)
.+ +|-|||+|.+
T Consensus 207 ~~GDIitHcfngkp 220 (386)
T COG3964 207 RRGDIITHCFNGKP 220 (386)
T ss_pred cCCceeeeeccCCC
Confidence 65 7889998864
No 107
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=88.84 E-value=13 Score=32.51 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=63.2
Q ss_pred ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCC
Q psy4673 24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSW 94 (171)
Q Consensus 24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~ 94 (171)
.+||.|.|+..+.+ .++++.--+.|..-|+..++..-. +++.++..+..+++... .+.+..|+=++...
T Consensus 54 G~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~-- 131 (430)
T COG0044 54 GLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLG-- 131 (430)
T ss_pred CeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccc--
Confidence 48999999997643 345666667777788877665433 34555555555553221 13444555554332
Q ss_pred CHHHHHHHHHHhccCCeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 95 DEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
.. .+.+......+++.=|+.... .-...+++-++.|. +.+.++++|+-+.
T Consensus 132 ---~~-~~~~~~~~~g~~~F~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~H~Ed~ 181 (430)
T COG0044 132 ---KL-ELTERGVEAGFKGFMDDSTGA----LDDDVLEEALEYAA-------------ELGALILVHAEDD 181 (430)
T ss_pred ---hh-hhhhhhhccceEEEecCCcCc----CCHHHHHHHHHHHH-------------hcCCeEEEecCCh
Confidence 11 222222122232221443211 22345666778888 6777777776554
No 108
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=88.69 E-value=10 Score=32.74 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=9.4
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|+..
T Consensus 67 G~id~H~Hl~~ 77 (443)
T PRK09045 67 GLINAHTHAAM 77 (443)
T ss_pred CEeccccChhh
Confidence 39999999974
No 109
>PRK06687 chlorohydrolase; Validated
Probab=88.42 E-value=11 Score=32.20 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=9.8
Q ss_pred ceEeeccCCCCC
Q psy4673 24 VLIDVGANLTNR 35 (171)
Q Consensus 24 ~~iDtH~HL~~~ 35 (171)
.|||+|+|+...
T Consensus 59 GlIn~H~H~~~~ 70 (419)
T PRK06687 59 GLVNCHTHSAMT 70 (419)
T ss_pred ceeeeccCCCcc
Confidence 399999999653
No 110
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=88.15 E-value=13 Score=30.53 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=62.1
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK------- 92 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~------- 92 (171)
+..=.|||+. .+.+. +.+|-+.|...++.=+... +...++.+++..+.-.|=.=+|-=+-.-.
T Consensus 70 VPV~lHLDH~---~~~~~-i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~ 145 (276)
T cd00947 70 VPVALHLDHG---SSFEL-IKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEG 145 (276)
T ss_pred CCEEEECCCC---CCHHH-HHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccc
Confidence 3455789985 35544 4677788998755434332 22344455566553212222333221110
Q ss_pred CCCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 93 SWDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 93 ~~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
.++ .-++..++++.. -.++|| -|.. .....+.+++ -++.+ ..+.|+++|+-|
T Consensus 146 ~~T--~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~--~~p~L~~~~L---~~i~~-------------~~~vPLVlHGgS 205 (276)
T cd00947 146 LLT--DPEEAEEFVEETGVDALAVAIGTSHGAYKG--GEPKLDFDRL---KEIAE-------------RVNVPLVLHGGS 205 (276)
T ss_pred cCC--CHHHHHHHHHHHCCCEEEeccCccccccCC--CCCccCHHHH---HHHHH-------------HhCCCEEEeCCC
Confidence 121 233444444432 245688 3322 1223444444 45566 668999999999
Q ss_pred CCccc
Q psy4673 165 SMMKE 169 (171)
Q Consensus 165 g~~~e 169 (171)
|.++|
T Consensus 206 G~~~e 210 (276)
T cd00947 206 GIPDE 210 (276)
T ss_pred CCCHH
Confidence 98875
No 111
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=87.92 E-value=4.5 Score=33.53 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=60.6
Q ss_pred EeeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCChhh--------HHHHHHHHHhcCCcEEEEeeeCCCCCCCCC-
Q psy4673 26 IDVGANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSLKS--------SKEALRLARIYPGMVYSTAGIHPHEAKSWD- 95 (171)
Q Consensus 26 iDtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~~~--------~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~- 95 (171)
+++=.||...... ..+...+..+.+.||+.+++++.|+.. ...++++.++... +..+++.||.--++..
T Consensus 83 ~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~-~~i~va~yPeghp~~~~ 161 (296)
T PRK09432 83 LEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVAD-FDISVAAYPEVHPEAKS 161 (296)
T ss_pred CCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCC-CccceeeCCCCCCCCCC
Confidence 3444788765432 256777788999999999999988521 1255666666554 3557888885333222
Q ss_pred -HHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 96 -EDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 96 -~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
+.+++.|++-+ ..| ||...+.-.+ -+.|.+.++.++
T Consensus 162 ~~~dl~~Lk~K~------~aGA~~~iTQ~~Fd--~~~~~~f~~~~~ 199 (296)
T PRK09432 162 AQADLINLKRKV------DAGANRAITQFFFD--VESYLRFRDRCV 199 (296)
T ss_pred HHHHHHHHHHHH------HcCCCeeecccccc--hHHHHHHHHHHH
Confidence 23444444322 346 7655432222 224666666665
No 112
>PRK02925 glucuronate isomerase; Reviewed
Probab=87.73 E-value=0.35 Score=42.48 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCccceEeeccCCCCCCCC-----CCHHHHH--------HHHHhcCCCE-EEEeCCChhhHHHHHHHHHhcC
Q psy4673 20 FDNYVLIDVGANLTNRKFG-----RDLESVV--------QRAKDSGVQK-IIAIGSSLKSSKEALRLARIYP 77 (171)
Q Consensus 20 ~~~~~~iDtH~HL~~~~~~-----~d~~~vl--------~~a~~~gv~~-~i~v~~~~~~~~~~~~l~~~~~ 77 (171)
-+.|++||-||||+...+. +++-++. +.++.+||.- .|....+ +.++-..+++..|
T Consensus 23 a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as--~~ekf~~~a~t~p 92 (466)
T PRK02925 23 AKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDAS--DREKFRAWAKTVP 92 (466)
T ss_pred HhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCC--HHHHHHHHHHhhh
Confidence 5778999999999753222 4555555 5678999973 4443333 4444444444443
No 113
>PRK08185 hypothetical protein; Provisional
Probab=87.64 E-value=11 Score=31.03 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=63.1
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCC----CCH
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAKS----WDE 96 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~----~~~ 96 (171)
..=.|||+. .+.+ .+.+|-+.|+..++.=+.+. +...++.+++..+.-.+-.-+|.=+..... ..+
T Consensus 70 PV~lHLDHg---~~~e-~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~ 145 (283)
T PRK08185 70 PFVIHLDHG---ATIE-DVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSE 145 (283)
T ss_pred CEEEECCCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccc
Confidence 455899985 3444 45677788998766655543 123344555566642233445553321000 000
Q ss_pred ---HHHHHHHHHhccC--C--eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 97 ---DYIDQLRDLVSNT--G--NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 97 ---~~~~~l~~~l~~~--~--vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
...++..+..+.. - .++|| =.|......... |.+-=++++ ..+.|+++|+-||.
T Consensus 146 ~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~---~e~l~~I~~-------------~~~iPLVlHGgsg~ 209 (283)
T PRK08185 146 IIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ---MDLLKEINE-------------RVDIPLVLHGGSAN 209 (283)
T ss_pred ccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcC---HHHHHHHHH-------------hhCCCEEEECCCCC
Confidence 0233334444332 2 34567 222221112233 333345566 67899999999998
Q ss_pred ccc
Q psy4673 167 MKE 169 (171)
Q Consensus 167 ~~e 169 (171)
++|
T Consensus 210 ~~e 212 (283)
T PRK08185 210 PDA 212 (283)
T ss_pred CHH
Confidence 876
No 114
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=87.48 E-value=12 Score=30.89 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=61.9
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC--------
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------- 92 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------- 92 (171)
..=.|||+.. +. +.+.+|-+.|...++.=++.. +.-.++.+++..+.-.|=.=+|-=+-.-.
T Consensus 76 PV~lHLDHg~---~~-e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~ 151 (284)
T PRK09195 76 PLALHLDHHE---KF-DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEAD 151 (284)
T ss_pred CEEEECCCCC---CH-HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCccccccc
Confidence 4457999853 44 556778888998755544432 12344455566553112222333221100
Q ss_pred -CCCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 93 -SWDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 93 -~~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
.++ .-++..++++.. -.|+|| =.|.. . ...+.+.+ =++.+ ..+.|+++|+-|
T Consensus 152 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~-p~Ld~~~L---~~I~~-------------~~~vPLVLHGgS 211 (284)
T PRK09195 152 ALYT--DPAQAREFVEATGIDSLAVAIGTAHGMYKG-E-PKLDFDRL---ENIRQ-------------WVNIPLVLHGAS 211 (284)
T ss_pred ccCC--CHHHHHHHHHHHCcCEEeeccCccccccCC-C-CcCCHHHH---HHHHH-------------HhCCCeEEecCC
Confidence 021 223334444432 245788 22222 1 13343333 34555 668999999999
Q ss_pred CCccc
Q psy4673 165 SMMKE 169 (171)
Q Consensus 165 g~~~e 169 (171)
|.++|
T Consensus 212 G~~~e 216 (284)
T PRK09195 212 GLPTK 216 (284)
T ss_pred CCCHH
Confidence 99876
No 115
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=87.46 E-value=0.91 Score=36.84 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=29.4
Q ss_pred cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673 23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS 61 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~ 61 (171)
+|.+|.|||-....-...+.+++++|...|+. ++.++.
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~-vlAiTD 38 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVD-VLAITD 38 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCC-EEEECC
Confidence 46789999987643334589999999999996 566664
No 116
>PRK04250 dihydroorotase; Provisional
Probab=87.35 E-value=2.3 Score=36.58 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=33.8
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHh
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARI 75 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~ 75 (171)
.+||+|+|+.... ..+++....+.+...|+..++....+ ++.+....+.+++
T Consensus 48 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~ 107 (398)
T PRK04250 48 GLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEK 107 (398)
T ss_pred CEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCc
Confidence 4999999995422 22456677788888999887775432 3445454555544
No 117
>PRK07213 chlorohydrolase; Provisional
Probab=87.22 E-value=15 Score=31.11 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=9.7
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|+..
T Consensus 51 Glvd~H~H~~~ 61 (375)
T PRK07213 51 PLINAHTHIGD 61 (375)
T ss_pred ceeeeccccCc
Confidence 59999999975
No 118
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=87.02 E-value=0.19 Score=44.26 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=28.7
Q ss_pred CCCccceEeeccCCCCCCC-----CCCHHHHH--------HHHHhcCCCEEEEeCCChhhHHHHHHHHHhc
Q psy4673 19 CFDNYVLIDVGANLTNRKF-----GRDLESVV--------QRAKDSGVQKIIAIGSSLKSSKEALRLARIY 76 (171)
Q Consensus 19 ~~~~~~~iDtH~HL~~~~~-----~~d~~~vl--------~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~ 76 (171)
--+.|++||.||||+...+ .+++.+++ ..++.+||.--...| +....++-..+++..
T Consensus 22 ~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg-~a~~~ekF~a~a~~~ 91 (462)
T PF02614_consen 22 YAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITG-DASPREKFRAWAETV 91 (462)
T ss_dssp CCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTC-SSSHHHHHHHHHHHG
T ss_pred HHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCC-CCCCHHHHHHHHHhh
Confidence 3678999999999985322 13455544 457888886322233 333444444555543
No 119
>PRK13660 hypothetical protein; Provisional
Probab=86.98 E-value=12 Score=28.84 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCC-ChhhH--HHHHHHHHhcCCcEEEEeeeCCC--CCCCCCHHHHHHHHHHhcc-CCeEEE
Q psy4673 41 LESVVQRAKDSGVQKIIAIGS-SLKSS--KEALRLARIYPGMVYSTAGIHPH--EAKSWDEDYIDQLRDLVSN-TGNSTM 114 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~-~~~~~--~~~~~l~~~~~~~v~~~~GiHP~--~~~~~~~~~~~~l~~~l~~-~~vvaI 114 (171)
+..-+.++-+.|++.+|+-|. ..+.| +-+++|.+.||+. -. .-+=|. ....|++..-+.+..++.. +.++.|
T Consensus 31 L~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~l-kL-~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~v 108 (182)
T PRK13660 31 IKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDL-KL-AVITPFEEHGENWNEANQEKLANILKQADFVKSI 108 (182)
T ss_pred HHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCe-EE-EEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEe
Confidence 344455566679997766443 34555 7888999999973 22 222343 4556888888888887765 567778
Q ss_pred e-cCC
Q psy4673 115 N-RYN 118 (171)
Q Consensus 115 G-Dy~ 118 (171)
. .||
T Consensus 109 s~~~y 113 (182)
T PRK13660 109 SKRPY 113 (182)
T ss_pred cCCCC
Confidence 8 434
No 120
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.70 E-value=15 Score=30.33 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=62.0
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCC-------CCC
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHE-------AKS 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~-------~~~ 93 (171)
..=.|||+.. +. +.+.+|-+.|...++.=++.. +...++.+++..+.-.|=.=+|-=+-. ...
T Consensus 76 PValHLDH~~---~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~ 151 (284)
T PRK12737 76 PLALHLDHHE---DL-DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKD 151 (284)
T ss_pred CEEEECCCCC---CH-HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccc
Confidence 4457899853 44 456778888998755444432 223445556666532122223322211 000
Q ss_pred --CCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 94 --WDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 94 --~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
++ .-++..++++.. -.|+|| =.|.. ....+.+.+ =++++ ..+.|+++|+-|
T Consensus 152 ~~~T--~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~--~p~Ld~~~L---~~I~~-------------~~~iPLVlHGgS 211 (284)
T PRK12737 152 AMYT--NPDAAAEFVERTGIDSLAVAIGTAHGLYKG--EPKLDFERL---AEIRE-------------KVSIPLVLHGAS 211 (284)
T ss_pred ccCC--CHHHHHHHHHHhCCCEEeeccCccccccCC--CCcCCHHHH---HHHHH-------------HhCCCEEEeCCC
Confidence 21 123334444432 245788 11221 123444444 34465 667999999999
Q ss_pred CCccc
Q psy4673 165 SMMKE 169 (171)
Q Consensus 165 g~~~e 169 (171)
|.++|
T Consensus 212 G~~~e 216 (284)
T PRK12737 212 GVPDE 216 (284)
T ss_pred CCCHH
Confidence 98876
No 121
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=86.70 E-value=17 Score=30.09 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=62.8
Q ss_pred eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------CC
Q psy4673 28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------SW 94 (171)
Q Consensus 28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~~ 94 (171)
.=.|||+. .+.+ .+.+|-+.|...++.-|... +...++.+++..+.-.|=.=+|.=+-.-. .+
T Consensus 77 V~lHLDH~---~~~e-~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~ 152 (283)
T PRK07998 77 VSLHLDHG---KTFE-DVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCK 152 (283)
T ss_pred EEEECcCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccccccc
Confidence 34789885 3554 44567788999876656542 22345556666664212233443321110 01
Q ss_pred CHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 95 DEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 95 ~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+ .-++..+++++. -.++|| -|. . ...+.+.+ =++.+ ..+.|+++|+-||.
T Consensus 153 T--~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~-~---p~l~~~~l---~~I~~-------------~~~vPLVlHGgSG~ 210 (283)
T PRK07998 153 T--EPEKVKDFVERTGCDMLAVSIGNVHGLED-I---PRIDIPLL---KRIAE-------------VSPVPLVIHGGSGI 210 (283)
T ss_pred C--CHHHHHHHHHHhCcCeeehhccccccCCC-C---CCcCHHHH---HHHHh-------------hCCCCEEEeCCCCC
Confidence 1 233344444432 245688 332 1 22333444 35566 67899999999999
Q ss_pred ccc
Q psy4673 167 MKE 169 (171)
Q Consensus 167 ~~e 169 (171)
++|
T Consensus 211 ~~e 213 (283)
T PRK07998 211 PPE 213 (283)
T ss_pred CHH
Confidence 875
No 122
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=86.65 E-value=9.3 Score=31.09 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=57.1
Q ss_pred eeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCChh------------hHHHHHHHHHh-cCCcEEEEeeeCCCCCC
Q psy4673 27 DVGANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSLK------------SSKEALRLARI-YPGMVYSTAGIHPHEAK 92 (171)
Q Consensus 27 DtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~~------------~~~~~~~l~~~-~~~~v~~~~GiHP~~~~ 92 (171)
++=.|+...... ..+...+..+...||+.+++++.|+. +...++++.++ +++ +..+++.||.--.
T Consensus 60 ~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp 138 (272)
T TIGR00676 60 PTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHP 138 (272)
T ss_pred CeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCC
Confidence 333677654332 25777888899999999987777654 13334444444 565 6778888786322
Q ss_pred CC--CHHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 93 SW--DEDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 93 ~~--~~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
+. .+.+++.|.+- +..| ||.-.+.-.+ .+.|.+.++.++
T Consensus 139 ~~~~~~~~~~~L~~K------~~aGA~f~iTQ~~fd--~~~~~~~~~~~~ 180 (272)
T TIGR00676 139 EAPNLEEDIENLKRK------VDAGADYAITQLFFD--NDDYYRFVDRCR 180 (272)
T ss_pred CCCCHHHHHHHHHHH------HHcCCCeEeeccccC--HHHHHHHHHHHH
Confidence 22 12334444432 2346 7655432222 134555555554
No 123
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=86.59 E-value=17 Score=30.08 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=62.3
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~ 93 (171)
..=.|||+.. +. +.+.+|-+.|...++.=|+.. +.-.++.+++..+.-.|=.=+|.=+-.-. .
T Consensus 79 PV~lHLDHg~---~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~ 154 (288)
T TIGR00167 79 PVALHLDHGA---SE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADES 154 (288)
T ss_pred cEEEECCCCC---CH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccc
Confidence 4558999853 54 456777788998755434432 11233344455443113333333321100 0
Q ss_pred --CCHHHHHHHHHHhccCC----eEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 94 --WDEDYIDQLRDLVSNTG----NSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 94 --~~~~~~~~l~~~l~~~~----vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
++ .-++..++++... .|+|| -|.. .+...+.+.+ =++.+ ..+.|+++|+-
T Consensus 155 ~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~--~p~~Ld~~~L---~~I~~-------------~v~vPLVlHGg 214 (288)
T TIGR00167 155 ALYT--DPEEAKEFVKLTGVDSLAAAIGNVHGVYKG--EPKGLDFERL---EEIQK-------------YVNLPLVLHGG 214 (288)
T ss_pred ccCC--CHHHHHHHHhccCCcEEeeccCccccccCC--CCCccCHHHH---HHHHH-------------HhCCCEEEeCC
Confidence 21 2345555665433 45688 3322 2221344444 34465 66899999999
Q ss_pred CCCccc
Q psy4673 164 SSMMKE 169 (171)
Q Consensus 164 sg~~~e 169 (171)
||.++|
T Consensus 215 SG~~~e 220 (288)
T TIGR00167 215 SGIPDE 220 (288)
T ss_pred CCCCHH
Confidence 998875
No 124
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=86.42 E-value=16 Score=30.65 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=9.6
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|++.
T Consensus 41 Glin~H~H~~~ 51 (377)
T TIGR01224 41 GLVDPHTHLVF 51 (377)
T ss_pred cEEecccCccc
Confidence 49999999974
No 125
>PRK09230 cytosine deaminase; Provisional
Probab=86.26 E-value=21 Score=30.87 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=9.7
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.+||+|+|++.
T Consensus 56 Glid~H~H~~~ 66 (426)
T PRK09230 56 PFIEPHIHLDT 66 (426)
T ss_pred ceeEEEEcccc
Confidence 49999999985
No 126
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=86.15 E-value=19 Score=30.16 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=64.2
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK------- 92 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~------- 92 (171)
+..=.|||+. .+.+ .+.+|-+.|...++.=|+.. +...++.+++..+.-.|=.=+|.=+-.-.
T Consensus 75 VPValHLDHg---~~~e-~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 150 (307)
T PRK05835 75 IPVALHLDHG---TTFE-SCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK 150 (307)
T ss_pred CeEEEECCCC---CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 4566899985 3554 45678888998765545432 22344455566553212222333221100
Q ss_pred C--CCHHHHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 93 S--WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 93 ~--~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
+ ++ .-++..++++.. -.++|| -|-.. .......+.++ ++++ ..+.|+++|+
T Consensus 151 ~~~~T--dPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~---~I~~-------------~~~iPLVLHG 211 (307)
T PRK05835 151 DAVLV--NPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQ---EVKR-------------LTNIPLVLHG 211 (307)
T ss_pred cccCC--CHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHH---HHHH-------------HhCCCEEEeC
Confidence 0 21 123334444432 245788 33211 11233444443 4577 7789999999
Q ss_pred cCCCccc
Q psy4673 163 DSSMMKE 169 (171)
Q Consensus 163 fsg~~~e 169 (171)
-||-++|
T Consensus 212 gSGip~e 218 (307)
T PRK05835 212 ASAIPDD 218 (307)
T ss_pred CCCCchH
Confidence 9998886
No 127
>PRK01211 dihydroorotase; Provisional
Probab=86.04 E-value=2.7 Score=36.40 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=29.1
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||.|+|+..+. ..+|+..--+.|..-||..++..-
T Consensus 47 G~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP 85 (409)
T PRK01211 47 AATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP 85 (409)
T ss_pred CeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC
Confidence 4899999998643 457888888888888998877753
No 128
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=85.99 E-value=0.55 Score=40.82 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCCccceEeeccCCCCCCCC-----CCHHHHH--------HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC
Q psy4673 18 NCFDNYVLIDVGANLTNRKFG-----RDLESVV--------QRAKDSGVQKIIAIGSSLKSSKEALRLARIYP 77 (171)
Q Consensus 18 ~~~~~~~~iDtH~HL~~~~~~-----~d~~~vl--------~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~ 77 (171)
.-.++|+|||-||||+...+. +|+-+++ +-++.+||..-.+.| +-.+-++-+.+++.+|
T Consensus 20 ~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~ 91 (463)
T COG1904 20 AYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVP 91 (463)
T ss_pred HhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhhh
Confidence 445789999999999853221 3443332 456788997543333 4444444455555544
No 129
>PRK08609 hypothetical protein; Provisional
Probab=85.94 E-value=3.5 Score=37.30 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.9
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIA 58 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~ 58 (171)
.+|.|||.....-..+++++++.|.+.|+..+.+
T Consensus 335 ~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~i 368 (570)
T PRK08609 335 QGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAI 368 (570)
T ss_pred cCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence 5799999975433357999999999999987554
No 130
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=84.77 E-value=20 Score=30.26 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=60.6
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~ 93 (171)
..=.|||+. .+. +.+.+|-+.|...++.=++.. +...++.+++..+.-.|=.=+|-=+-.-. .
T Consensus 87 PV~lHLDHg---~~~-e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~ 162 (321)
T PRK07084 87 PIVLHLDHG---DSF-ELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHT 162 (321)
T ss_pred cEEEECCCC---CCH-HHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccc
Confidence 344799985 354 456888889998755545432 22344455566553212222333221100 1
Q ss_pred CCHHHHHHHHHHhccC----CeEEEe----cCCCCCC--cHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEe
Q psy4673 94 WDEDYIDQLRDLVSNT----GNSTMN----RYNSSQW--ITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHK 162 (171)
Q Consensus 94 ~~~~~~~~l~~~l~~~----~vvaIG----Dy~~~~~--~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~ 162 (171)
++ .-++..++++.. -.++|| -|...+. ....+.+.++ ++++ .+ +.|+++|+
T Consensus 163 ~T--~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~---~I~~-------------~~~~vPLVLHG 224 (321)
T PRK07084 163 YT--QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILE---EIEK-------------RIPGFPIVLHG 224 (321)
T ss_pred cC--CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHH---HHHH-------------hcCCCCEEEeC
Confidence 21 123334444332 245688 4432111 1234444443 5666 66 69999999
Q ss_pred cCCCc
Q psy4673 163 DSSMM 167 (171)
Q Consensus 163 fsg~~ 167 (171)
-||.+
T Consensus 225 gSg~~ 229 (321)
T PRK07084 225 SSSVP 229 (321)
T ss_pred CCCCc
Confidence 99654
No 131
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=83.96 E-value=12 Score=32.17 Aligned_cols=43 Identities=9% Similarity=-0.043 Sum_probs=21.7
Q ss_pred HHHHhcCCCEEEE-eCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 46 QRAKDSGVQKIIA-IGSSLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 46 ~~a~~~gv~~~i~-v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
.++...|+..+.. +.........+.+.+.+...+.+.+.++-.
T Consensus 110 ~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~ 153 (421)
T COG0402 110 LEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQD 153 (421)
T ss_pred HHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeecccc
Confidence 4566778876333 222334444455555555444444555444
No 132
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=83.80 E-value=17 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-------hh-------------hHHHHHHHHHhcCCcEEEEeeeCCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-------LK-------------SSKEALRLARIYPGMVYSTAGIHPH 89 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~-------------~~~~~~~l~~~~~~~v~~~~GiHP~ 89 (171)
.+.++.++.+++.|++.+|+.-+. |. -...+++.|+++.-.|+.+++.-|.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~ 90 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPD 90 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCch
Confidence 478889999999999987765442 22 2356677788876556666665553
No 133
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.45 E-value=11 Score=30.83 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhc
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIY 76 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~ 76 (171)
...+.++++++++||++++++-..++........++++
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~ 146 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH 146 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc
Confidence 45677888888888888888877777666555555443
No 134
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=83.01 E-value=25 Score=29.14 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC-
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT- 109 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~- 109 (171)
+-..++++..-+.||.+++..|++ .++..++++.+.+. .+++-.-+|+=... +++.+ ++-+.+++-
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~----t~eai-~lak~a~~~G 99 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS----TAEAI-ELAKHAEKLG 99 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc----HHHHH-HHHHHHHhcC
Confidence 346778888999999999998885 45666666655433 22322234443322 22233 333334432
Q ss_pred --CeEEEecCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 110 --GNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 110 --~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
.+..+--||+... |..++..+-.+|. ..++|+|+=.
T Consensus 100 ad~il~v~PyY~k~~----~~gl~~hf~~ia~-------------a~~lPvilYN 137 (299)
T COG0329 100 ADGILVVPPYYNKPS----QEGLYAHFKAIAE-------------AVDLPVILYN 137 (299)
T ss_pred CCEEEEeCCCCcCCC----hHHHHHHHHHHHH-------------hcCCCEEEEe
Confidence 2333446666433 6666666677777 7778877654
No 135
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=82.37 E-value=7.8 Score=32.02 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=47.7
Q ss_pred eccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCh----------hhHHHHHHHHHhc-CCcEEEEeeeCCCCCCC
Q psy4673 28 VGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSL----------KSSKEALRLARIY-PGMVYSTAGIHPHEAKS 93 (171)
Q Consensus 28 tH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~----------~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~ 93 (171)
+=+||..... ...+.+.+..+.+.||..+++++.|+ .+...++++.+++ .+.+...++.+|..-++
T Consensus 80 ~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~ 157 (291)
T COG0685 80 PIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE 157 (291)
T ss_pred cceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCcc
Confidence 4468876432 24677888999999999999999887 2456677777754 34367788999976543
No 136
>PRK00369 pyrC dihydroorotase; Provisional
Probab=81.87 E-value=5.5 Score=34.26 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=28.8
Q ss_pred ceEeeccCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNRK--FGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||.|+|+..+. ..++++.--..|..-||..++...
T Consensus 48 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP 86 (392)
T PRK00369 48 GAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP 86 (392)
T ss_pred CEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC
Confidence 4899999997643 347888888888888998877654
No 137
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=81.85 E-value=1.3 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=16.5
Q ss_pred ceEeeccCCCCCCC-CCCHHHHHHHHHhcCCCE
Q psy4673 24 VLIDVGANLTNRKF-GRDLESVVQRAKDSGVQK 55 (171)
Q Consensus 24 ~~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~ 55 (171)
.|||+|+|+..... ..+.+.....+...||..
T Consensus 35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred CeEeeeeccccccccccchhhHHHHHHCcceee
Confidence 49999999873211 122233444444667643
No 138
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=81.80 E-value=29 Score=28.91 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=9.7
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|++.
T Consensus 38 g~vn~H~Hl~~ 48 (371)
T cd01296 38 GLVDCHTHLVF 48 (371)
T ss_pred ceeecCCCCcC
Confidence 59999999975
No 139
>PRK09236 dihydroorotase; Reviewed
Probab=81.56 E-value=5.5 Score=34.57 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC
Q psy4673 24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS 61 (171)
Q Consensus 24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~ 61 (171)
.+||+|+|+..... .++.....+.+...||..++..+.
T Consensus 55 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p~ 94 (444)
T PRK09236 55 GMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMPN 94 (444)
T ss_pred CEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCCC
Confidence 49999999875322 246666778888999998887654
No 140
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=81.39 E-value=27 Score=28.18 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=60.3
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN 111 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v 111 (171)
.....++.+.+.||.++++.|+. .++..++++.+.+. ++.+-..+|+-.... ++.++.. +.+++-.+
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~----~~~i~~a-~~a~~~Ga 93 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANST----REAIELA-RHAEEAGA 93 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccH----HHHHHHH-HHHHHcCC
Confidence 46778888888999998887774 45566666644332 223444466644322 2233333 33344333
Q ss_pred EE--Ee-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 112 ST--MN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 112 va--IG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
-| +. -+|+.. + |.+++...-++|. ..++|++++.+-+
T Consensus 94 d~v~v~pP~y~~~-~---~~~~~~~~~~ia~-------------~~~~pi~iYn~P~ 133 (281)
T cd00408 94 DGVLVVPPYYNKP-S---QEGIVAHFKAVAD-------------ASDLPVILYNIPG 133 (281)
T ss_pred CEEEECCCcCCCC-C---HHHHHHHHHHHHh-------------cCCCCEEEEECcc
Confidence 33 33 555432 2 4556666677887 7788988876543
No 141
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=81.20 E-value=7.3 Score=31.23 Aligned_cols=32 Identities=28% Similarity=0.168 Sum_probs=24.4
Q ss_pred EeeccCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Q psy4673 26 IDVGANLTNR-KFGRDLESVVQRAKDSGVQKII 57 (171)
Q Consensus 26 iDtH~HL~~~-~~~~d~~~vl~~a~~~gv~~~i 57 (171)
+|.|+|.... .-...+++.+++|.+.|+..+.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~ 33 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEIC 33 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEE
Confidence 4889998653 2235789999999999998643
No 142
>PRK07945 hypothetical protein; Provisional
Probab=79.39 E-value=8.6 Score=32.37 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=27.2
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII 57 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i 57 (171)
...|.|+|-....-...+++.+++|.+.|++.+.
T Consensus 96 ~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~ 129 (335)
T PRK07945 96 LRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCA 129 (335)
T ss_pred HhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEE
Confidence 3689999988654345799999999999998643
No 143
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=79.07 E-value=7.6 Score=37.06 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=36.7
Q ss_pred cceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673 23 YVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP 77 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~ 77 (171)
|+|+|.|+|-...-+ .-.+++++++|++.|+.. +.++- +.....+..+.+++++
T Consensus 1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~a-iAiTDh~~~~g~~~f~~~~~~~g 58 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIELGMPA-IALTDHGVMYGAIELLKVCRNKG 58 (874)
T ss_pred CCccccccCCcCchhhccCCHHHHHHHHHHCCCCE-EEEecCCChhhHHHHHHHHHHcC
Confidence 569999999876311 247899999999999985 44443 2344445556666653
No 144
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=78.81 E-value=25 Score=28.41 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=55.3
Q ss_pred eeccCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCChh--------------hHHHHHHHHHhc--CCcEEEEeeeCCC
Q psy4673 27 DVGANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSLK--------------SSKEALRLARIY--PGMVYSTAGIHPH 89 (171)
Q Consensus 27 DtH~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~~--------------~~~~~~~l~~~~--~~~v~~~~GiHP~ 89 (171)
++=.|+...... ..++..+..+...||+.+++++.|+. +...++++.+.. +. +...++.+|.
T Consensus 60 ~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~-~~igva~yPe 138 (274)
T cd00537 60 EPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGG-FSIGVAAYPE 138 (274)
T ss_pred CeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCC-CccccccCCC
Confidence 333677764332 46778888899999999999966542 234455554443 33 3445666774
Q ss_pred CCCCCC--HHHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 90 EAKSWD--EDYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 90 ~~~~~~--~~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
.-++.. +.+++.|.+-+. .| ||.-.+.-.+. +.|.+.++.++
T Consensus 139 ~hp~~~~~~~~~~~L~~Ki~------aGA~f~iTQ~~fd~--~~~~~~~~~~~ 183 (274)
T cd00537 139 GHPEAPSLEEDIKRLKRKVD------AGADFIITQLFFDN--DAFLRFVDRCR 183 (274)
T ss_pred cCCCCCCHHHHHHHHHHHHH------CCCCEEeecccccH--HHHHHHHHHHH
Confidence 322221 233444443222 27 77654322221 24555556555
No 145
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=78.60 E-value=4.2 Score=34.52 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=29.1
Q ss_pred ceEeeccCCCCC-CCC----CCHHHHHHHHHhcCCCEEEEeC--CChhhHHHH
Q psy4673 24 VLIDVGANLTNR-KFG----RDLESVVQRAKDSGVQKIIAIG--SSLKSSKEA 69 (171)
Q Consensus 24 ~~iDtH~HL~~~-~~~----~d~~~vl~~a~~~gv~~~i~v~--~~~~~~~~~ 69 (171)
.+||+|+|.... .+. ++.....+.+...||..++... ..++...+.
T Consensus 52 G~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~ 104 (374)
T cd00854 52 GFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKA 104 (374)
T ss_pred cEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeeccccCCCHHHHHHH
Confidence 499999998541 121 3456667778889998866544 334544333
No 146
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=78.01 E-value=33 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=22.8
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL 63 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~ 63 (171)
+..=.|||+. .+.+ .+.+|-+.|...++.=++..
T Consensus 76 VPVaLHLDHg---~~~e-~i~~Ai~~GFtSVMiDgS~l 109 (347)
T PRK13399 76 IPICLHQDHG---NSPA-TCQSAIRSGFTSVMMDGSLL 109 (347)
T ss_pred CcEEEECCCC---CCHH-HHHHHHhcCCCEEEEeCCCC
Confidence 3455899985 2444 46888889998766555533
No 147
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=77.42 E-value=37 Score=27.56 Aligned_cols=100 Identities=19% Similarity=0.303 Sum_probs=59.2
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCc--EEEEeeeCCCCCCCCCHHHHHHHHHHhccC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARI-YPGM--VYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~--v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~ 109 (171)
...+.++..-+.||.++++.|+. .++..++++++.+ .+++ |+..+|-.. .++.++..+. +++-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s------t~~~i~~a~~-a~~~ 95 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANS------TEEAIELARH-AQDA 95 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS------HHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchh------HHHHHHHHHH-Hhhc
Confidence 46677788888999998888774 4556666665433 2333 444444332 1234444444 3332
Q ss_pred C--eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 110 G--NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 110 ~--vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
. .+.|. .||...+ |.++++..-++|. ..++|++++..
T Consensus 96 Gad~v~v~~P~~~~~s----~~~l~~y~~~ia~-------------~~~~pi~iYn~ 135 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPS----QEELIDYFRAIAD-------------ATDLPIIIYNN 135 (289)
T ss_dssp T-SEEEEEESTSSSCC----HHHHHHHHHHHHH-------------HSSSEEEEEEB
T ss_pred CceEEEEeccccccch----hhHHHHHHHHHHh-------------hcCCCEEEEEC
Confidence 2 33344 6666432 4556666777787 77788887765
No 148
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.85 E-value=41 Score=27.78 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=60.0
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC-------C
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK-------S 93 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-------~ 93 (171)
..=.|||+. .+.+ .+.+|-+.|...++.=|+.. +.-.++.+++..+.-.|=.=+|.=+-.-. +
T Consensus 76 PValHLDH~---~~~e-~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~ 151 (284)
T PRK12857 76 PVALHLDHG---TDFE-QVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDERE 151 (284)
T ss_pred CEEEECCCC---CCHH-HHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccch
Confidence 445799985 3554 45678888998755545432 12234444555543112222332221100 0
Q ss_pred --CCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 94 --WDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 94 --~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
++ .-++..++++.. -.|+|| =.|.. ....+.+.++ +|.+ ..+.|+++|+-|
T Consensus 152 ~~~T--~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~--~p~Ld~~~L~---~i~~-------------~~~vPLVlHGgS 211 (284)
T PRK12857 152 AAMT--DPEEARRFVEETGVDALAIAIGTAHGPYKG--EPKLDFDRLA---KIKE-------------LVNIPIVLHGSS 211 (284)
T ss_pred hhcC--CHHHHHHHHHHHCCCEEeeccCccccccCC--CCcCCHHHHH---HHHH-------------HhCCCEEEeCCC
Confidence 21 123333444332 245688 12221 1234444443 3455 567999999999
Q ss_pred CCccc
Q psy4673 165 SMMKE 169 (171)
Q Consensus 165 g~~~e 169 (171)
|.++|
T Consensus 212 G~~~e 216 (284)
T PRK12857 212 GVPDE 216 (284)
T ss_pred CCCHH
Confidence 98876
No 149
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=75.92 E-value=24 Score=28.75 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCC
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~ 90 (171)
.+.++++|...|- ++...|..++-.+.+.+ +.++||+. -.+|.|--+
T Consensus 97 ~~~Ll~~a~~~~~-~vfllGgkp~V~~~a~~~l~~~~p~l--~ivg~h~GY 144 (253)
T COG1922 97 VEALLKRAAEEGK-RVFLLGGKPGVAEQAAAKLRAKYPGL--KIVGSHDGY 144 (253)
T ss_pred HHHHHHHhCccCc-eEEEecCCHHHHHHHHHHHHHHCCCc--eEEEecCCC
Confidence 4677788877754 57888999998877765 78889963 248888433
No 150
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=75.88 E-value=13 Score=36.85 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=42.7
Q ss_pred CCCCCccceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673 17 TNCFDNYVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP 77 (171)
Q Consensus 17 ~~~~~~~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~ 77 (171)
|.+..+-+.+|.|+|-..... ...+++++++|.+.|+.. |.++- +...+..+.+.++++.
T Consensus 96 r~d~~~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~a-iAITDH~~~~~~~~~~~~~~~~~ 159 (1213)
T TIGR01405 96 RKDNAKEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKA-IAITDHGVVQAFPEAYKAAKKDG 159 (1213)
T ss_pred ccCCCccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCE-EEEecCCCccCHHHHHHHHHhcC
Confidence 445555678999999876422 247899999999999975 55553 3456777777777664
No 151
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=75.53 E-value=48 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=23.6
Q ss_pred ceEeeccCCCCC----CC-CCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNR----KF-GRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~----~~-~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+... .+ ..+.+.-+.++...|+..++..+
T Consensus 55 G~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d~~ 96 (387)
T cd01308 55 GFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCL 96 (387)
T ss_pred CeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEecCc
Confidence 499999998642 11 12333344567788998877654
No 152
>PRK01060 endonuclease IV; Provisional
Probab=75.22 E-value=40 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred cceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEE
Q psy4673 23 YVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKI 56 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~ 56 (171)
||.+=+|+.+. .++++.++.+.+.|++.+
T Consensus 1 ~~~~g~~~~~~-----~~~~~~l~~~~~~G~d~v 29 (281)
T PRK01060 1 MKLIGAHVSAA-----GGLEGAVAEAAEIGANAF 29 (281)
T ss_pred CCeEEEeeecC-----CCHHHHHHHHHHcCCCEE
Confidence 45566666554 358899999999999875
No 153
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=74.94 E-value=27 Score=30.71 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=8.5
Q ss_pred ceEeeccCCC
Q psy4673 24 VLIDVGANLT 33 (171)
Q Consensus 24 ~~iDtH~HL~ 33 (171)
.|||+|+|++
T Consensus 58 GlVdaH~Hl~ 67 (488)
T PRK06151 58 GFIDLDALSD 67 (488)
T ss_pred CEEeeecccc
Confidence 3999999975
No 154
>PTZ00300 pyruvate kinase; Provisional
Probab=74.57 E-value=50 Score=29.22 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCCCC-CCCCCHHHHHHHHHHhccCCeEEEe-
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHPHE-AKSWDEDYIDQLRDLVSNTGNSTMN- 115 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP~~-~~~~~~~~~~~l~~~l~~~~vvaIG- 115 (171)
.|... ++.+-+.|++++.+..+ ++++...+.++..... -++.- +.=.+.+.++.|++.+...-.+-||
T Consensus 148 kD~~d-I~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~--------~~~~IiaKIEt~eav~nldeI~~~~DgImVaR 218 (454)
T PTZ00300 148 KDCAD-LQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKG--------GDIMIICKIENHQGVQNIDSIIEESDGIMVAR 218 (454)
T ss_pred hhHHH-HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcC--------CCceEEEEECCHHHHHhHHHHHHhCCEEEEec
Confidence 35444 57888999998666555 5778888887775422 11211 1112446778888877655555666
Q ss_pred -cCCCCCCc---HHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673 116 -RYNSSQWI---TEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH 161 (171)
Q Consensus 116 -Dy~~~~~~---~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH 161 (171)
|..-.-.. ...|+ +.++.|. +.++|+|+=
T Consensus 219 GDLgvei~~e~vp~~Qk----~Ii~~~~-------------~~gkpvI~A 251 (454)
T PTZ00300 219 GDLGVEIPAEKVVVAQK----ILISKCN-------------VAGKPVICA 251 (454)
T ss_pred chhhhhcChHHHHHHHH----HHHHHHH-------------HcCCCEEEE
Confidence 77653221 23443 3457777 888998763
No 155
>PRK07575 dihydroorotase; Provisional
Probab=74.52 E-value=11 Score=32.78 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.6
Q ss_pred ceEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeC
Q psy4673 24 VLIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 24 ~~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
.+||+|+|+... ...+++....+.+...||..++...
T Consensus 57 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp 95 (438)
T PRK07575 57 GVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP 95 (438)
T ss_pred cEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC
Confidence 499999998643 2345777777888889998877754
No 156
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=74.34 E-value=27 Score=28.13 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEeeeCCCC
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~GiHP~~ 90 (171)
..++++.+...|. ++..+|..++..+++.+ +.++| + +- .+|.|.-+
T Consensus 94 ~~~ll~~~~~~~~-~v~llG~~~~v~~~a~~~l~~~y-~-l~-i~g~~~Gy 140 (243)
T PRK03692 94 WEALMARAGKEGT-PVFLVGGKPEVLAQTEAKLRTQW-N-VN-IVGSQDGY 140 (243)
T ss_pred HHHHHHHHHhcCC-eEEEECCCHHHHHHHHHHHHHHh-C-CE-EEEEeCCC
Confidence 4577888888885 57888999998888877 56778 5 33 36766433
No 157
>PLN02591 tryptophan synthase
Probab=74.28 E-value=15 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
..+.++++|+++|++++|++-..+++.....+
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~ 125 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRA 125 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 45666666666666666666665554443333
No 158
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=74.08 E-value=13 Score=35.98 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=37.7
Q ss_pred cceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673 23 YVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP 77 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~ 77 (171)
|.++|.|||-...-+ .-.+++++++|++.|+.. ++++- +...+.+..+.+++++
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~a-vAITDh~~l~G~~~f~~~a~~~g 58 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKENNLKT-LVLTDHNNMFGVPKFYKLCKKNN 58 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHHcCCCE-EEEecCCcHHhHHHHHHHHHHcC
Confidence 458999999876422 247899999999999975 45443 3455556666666654
No 159
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.94 E-value=13 Score=32.81 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=56.3
Q ss_pred ceEeeccCCCCCCCC-C-CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhcCCc-EEEEeeeCCCCCCC
Q psy4673 24 VLIDVGANLTNRKFG-R-DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIYPGM-VYSTAGIHPHEAKS 93 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~-~-d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~ 93 (171)
.|||.|+|.|...+. . -++.+ ..||..+|.-.|. +++.........--+.. ++.+.- -||-=..
T Consensus 62 GFIDvHtHyD~~~~~d~~l~psv-----~hGVTTVv~GNCgis~ap~n~ed~d~l~s~ve~v~~e~~~~~~~-~~~~w~t 135 (579)
T COG3653 62 GFIDVHTHYDAEVLLDPGLRPSV-----RHGVTTVVLGNCGISTAPANSEDADDLFSRVEAVGREFVFGALR-DNQTWST 135 (579)
T ss_pred cEEEeeecccceeeecCCccchh-----hcCeeEEEecCcccccccCChhhhhhhhhhhhhcCccccccccc-cccccCC
Confidence 599999999864321 1 12222 4588776542222 34444444443333321 222222 3432222
Q ss_pred CCHHHHHHHHHHhccCCeEE-Ee----------cCCC-CCCcHHHHHHHHHHHHHHhhH
Q psy4673 94 WDEDYIDQLRDLVSNTGNST-MN----------RYNS-SQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 94 ~~~~~~~~l~~~l~~~~vva-IG----------Dy~~-~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
+ .+.++.|+.+--..++.| +| +-.. +..+.+.......++|+-|.+
T Consensus 136 f-~eyleale~~plgvnv~allgH~aLR~avmg~~~a~~~p~TeaelaaMaallreAlE 193 (579)
T COG3653 136 F-AEYLEALEALPLGVNVSALLGHSALRTAVLGLDRATDDPPTEAELAAMAALLREALE 193 (579)
T ss_pred H-HHHHHHHHhCccCCChhhhcchHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHh
Confidence 2 346666666533345554 55 1111 234556778888888888876
No 160
>KOG4342|consensus
Probab=73.46 E-value=8 Score=35.73 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCCcEEEEeeeC-CCCCCCCCHHHHHHHHHHhccCCeEEEe------cCCC-CCCcHHHH----HHHH
Q psy4673 64 KSSKEALRLARIYPGMVYSTAGIH-PHEAKSWDEDYIDQLRDLVSNTGNSTMN------RYNS-SQWITEIK----QTLF 131 (171)
Q Consensus 64 ~~~~~~~~l~~~~~~~v~~~~GiH-P~~~~~~~~~~~~~l~~~l~~~~vvaIG------Dy~~-~~~~~~~Q----~~~F 131 (171)
.+|...++|..++|..+|.|---- =.+..+..+...+.|.+++...++++|| |... ..+....| +.+|
T Consensus 308 RSW~tq~~lMdR~PEy~FvcSQAqQ~~WlkedhP~~f~kl~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FF 387 (1078)
T KOG4342|consen 308 RSWVTQLQLMDRNPEYIFVCSQAQQLEWLKEDHPGLFSKLQEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFF 387 (1078)
T ss_pred HHHHHHHhHHhhCcceeEehhhHHHHHHHhhhChhHHHHHHHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHH
Confidence 478888888999997555432111 0112222335667788888889999999 5443 23344444 3456
Q ss_pred HHHHHHhh
Q psy4673 132 TTFVDITA 139 (171)
Q Consensus 132 ~~ql~lA~ 139 (171)
.+..-+-.
T Consensus 388 lkeFG~~c 395 (1078)
T KOG4342|consen 388 LKEFGKMC 395 (1078)
T ss_pred HHHhhhhh
Confidence 55554433
No 161
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=73.27 E-value=15 Score=36.22 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=35.7
Q ss_pred ccceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673 22 NYVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY 76 (171)
Q Consensus 22 ~~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~ 76 (171)
+|+++|.|+|-..... ...+++++++|.+.|+.. ++++. +.....+..+.+++.
T Consensus 2 mm~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~a-vAITDH~~~~g~~~f~~~a~~~ 59 (1151)
T PRK06826 2 KMSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDS-IAITDHGVMYGVVDFYKAAKKQ 59 (1151)
T ss_pred CCcceeccccccCChhhhcCCHHHHHHHHHHCCCCE-EEEecCCchHhHHHHHHHHHhC
Confidence 3569999999876422 246899999999999985 44443 233334444555554
No 162
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=73.22 E-value=61 Score=28.07 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=9.4
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|+..
T Consensus 59 G~vd~H~H~~~ 69 (441)
T TIGR03314 59 GFINTHNHFYS 69 (441)
T ss_pred Ceeecccchhh
Confidence 49999999964
No 163
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=72.98 E-value=14 Score=36.47 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=35.8
Q ss_pred cceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673 23 YVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY 76 (171)
Q Consensus 23 ~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~ 76 (171)
|+|+|.|+|-...-+ ...+++++++|.+.|+..+ .++- ......+..+.+++.
T Consensus 1 m~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~al-AiTDh~~l~G~~~f~~~~~~~ 57 (1170)
T PRK07374 1 MAFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAI-ALTDHGVMYGAIELLKLCKGK 57 (1170)
T ss_pred CCcccccccCcCchhhccCCHHHHHHHHHHCCCCEE-EEecCCchHHHHHHHHHHHHc
Confidence 568999999886422 2478999999999999864 4442 234444445555654
No 164
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=72.95 E-value=60 Score=27.87 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=9.7
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|+..
T Consensus 43 GfVn~H~Hl~~ 53 (418)
T cd01313 43 GMPNLHSHAFQ 53 (418)
T ss_pred CccccCccHHH
Confidence 49999999985
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.79 E-value=15 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=22.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~ 74 (171)
..+.+++++.++||++++++-..+++.....+.++
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 55667777777777777776666655544444433
No 166
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=71.82 E-value=56 Score=27.04 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHH-hcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLAR-IYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG 110 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~-~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~ 110 (171)
+....+++...+.||.++++.|+. .++..++++.+. ...+++-..+|+--... ++.++.. +.+++-.
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t----~~ai~~a-~~A~~~G 103 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNT----RDTIART-RALLDLG 103 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCH----HHHHHHH-HHHHHhC
Confidence 356788889999999998877764 456666665433 23344433456543322 2334333 3334433
Q ss_pred eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEec
Q psy4673 111 NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHKD 163 (171)
Q Consensus 111 vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~f 163 (171)
+-||- -||+... |.+++...-++|. .. ++|+++-.+
T Consensus 104 ad~vlv~~P~y~~~~----~~~l~~yf~~va~-------------a~~~lPv~iYn~ 143 (309)
T cd00952 104 ADGTMLGRPMWLPLD----VDTAVQFYRDVAE-------------AVPEMAIAIYAN 143 (309)
T ss_pred CCEEEECCCcCCCCC----HHHHHHHHHHHHH-------------hCCCCcEEEEcC
Confidence 33333 6655432 4555555566776 66 488776543
No 167
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=71.78 E-value=55 Score=26.94 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=60.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC--
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT-- 109 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~-- 109 (171)
....+++...+.||.+++..|+. .++..++++.+.+ ..+++-..+|+-. . ..+.++..+.. ++-
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~----t~~~i~~~~~a-~~~Ga 102 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-G----TAQAIEYAQAA-ERAGA 102 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-C----HHHHHHHHHHH-HHhCC
Confidence 46778888889999998887763 5667777764432 3333333345522 1 12345444443 332
Q ss_pred CeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 110 GNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 110 ~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
..+.+- .||+.. + |..++..+-++|. ..+.|+++-.+.|
T Consensus 103 dav~~~pP~y~~~-~---~~~i~~~f~~va~-------------~~~lpi~lYn~~g 142 (303)
T PRK03620 103 DGILLLPPYLTEA-P---QEGLAAHVEAVCK-------------STDLGVIVYNRDN 142 (303)
T ss_pred CEEEECCCCCCCC-C---HHHHHHHHHHHHH-------------hCCCCEEEEcCCC
Confidence 233344 666533 2 4556666667777 6678877766554
No 168
>PLN02540 methylenetetrahydrofolate reductase
Probab=71.44 E-value=45 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=27.8
Q ss_pred eeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673 27 DVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSL 63 (171)
Q Consensus 27 DtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~ 63 (171)
++=+||..... ...++..|.+|.+.||+.++++..|+
T Consensus 60 e~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 60 ETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred CeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 44478876432 23578888999999999999888875
No 169
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=71.09 E-value=17 Score=36.72 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCCCC-ccceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673 17 TNCFD-NYVLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP 77 (171)
Q Consensus 17 ~~~~~-~~~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~ 77 (171)
|.+.. .-+.+|.|||-..... ..++++++++|.+.|+.. |+++- +...+..+.+.+++++
T Consensus 325 r~d~~~~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~a-IAITDH~~v~~~p~a~~~~k~~g 389 (1437)
T PRK00448 325 RKDTAEEEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKA-IAITDHGVVQAFPEAYNAAKKAG 389 (1437)
T ss_pred cCCCCcccceEEecccccCcccccCCCHHHHHHHHHHCCCCE-EEEecCCCCcCHHHHHHHHHhcC
Confidence 44444 5568999999876522 357999999999999975 55553 3556777777776654
No 170
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=70.98 E-value=19 Score=29.77 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=59.1
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCC---C-----
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHE---A----- 91 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~---~----- 91 (171)
+..=.|||+.. ++ +.+.+|-+.|...++.=++.. ....++.+++..+.-.|=.=+|.=... .
T Consensus 74 vPValHLDH~~---~~-e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~ 149 (287)
T PF01116_consen 74 VPVALHLDHGK---DF-EDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEE 149 (287)
T ss_dssp SEEEEEEEEE----SH-HHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT
T ss_pred CCEEeecccCC---CH-HHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccccc
Confidence 34557899852 33 556777788998755544432 123444555666542233334433211 0
Q ss_pred -C-CCCHHHHHHHHHHhccC----CeEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEE
Q psy4673 92 -K-SWDEDYIDQLRDLVSNT----GNSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVH 161 (171)
Q Consensus 92 -~-~~~~~~~~~l~~~l~~~----~vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH 161 (171)
. -++ +-++..+++++. -.|+|| =.|..........+.+ =++.+ .. +.|+++|
T Consensus 150 ~~~~~T--dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L---~~I~~-------------~~~~iPLVlH 211 (287)
T PF01116_consen 150 TESLYT--DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRL---KEIRE-------------AVPDIPLVLH 211 (287)
T ss_dssp -TTCSS--SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHH---HHHHH-------------HHHTSEEEES
T ss_pred cccccc--CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHH---HHHHH-------------hcCCCCEEEE
Confidence 1 111 223333444332 245678 2222201223344444 34555 56 7999999
Q ss_pred ecCCCccc
Q psy4673 162 KDSSMMKE 169 (171)
Q Consensus 162 ~fsg~~~e 169 (171)
+-||.++|
T Consensus 212 GgSG~~~e 219 (287)
T PF01116_consen 212 GGSGLPDE 219 (287)
T ss_dssp SCTTS-HH
T ss_pred CCCCCCHH
Confidence 99998876
No 171
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=70.07 E-value=45 Score=27.54 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC--eEEEe
Q psy4673 63 LKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG--NSTMN 115 (171)
Q Consensus 63 ~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~--vvaIG 115 (171)
++...++++.+.++|..+-.+++..|.... ++.++.|.++....- -+.+|
T Consensus 93 ~~~L~~l~~~i~~~~~~~~isi~trpd~l~---~e~l~~L~~l~~~G~~~~i~lG 144 (302)
T TIGR01212 93 VEVLKEMYEQALSYDDVVGLSVGTRPDCVP---DEVLDLLAEYVERGYEVWVELG 144 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEecCCcCC---HHHHHHHHHhhhCCceEEEEEc
Confidence 456677777666677656778999998764 456677776543322 36788
No 172
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=69.92 E-value=15 Score=31.36 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=44.6
Q ss_pred ceEeeccCCCCCCC----C------CCHHHHHHHHHhcCCCEEEEe---C------CChhhHHHHH---HHHHhcCCcEE
Q psy4673 24 VLIDVGANLTNRKF----G------RDLESVVQRAKDSGVQKIIAI---G------SSLKSSKEAL---RLARIYPGMVY 81 (171)
Q Consensus 24 ~~iDtH~HL~~~~~----~------~d~~~vl~~a~~~gv~~~i~v---~------~~~~~~~~~~---~l~~~~~~~v~ 81 (171)
.+||+|+|.....+ . ..+..-=..+...||..++.. + .+++.++..+ +.++..+ ..+
T Consensus 49 GlID~H~h~~e~~~~prp~~~~~~~~~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 127 (376)
T TIGR02318 49 GLIDLHTDNLERHMSPRPGVDWPIDAAIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRG-LLR 127 (376)
T ss_pred cEEEcccCccccCcCCCCCCCcchHHHHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcC-chh
Confidence 49999999875211 1 122222245667899875533 2 3445555555 3333222 244
Q ss_pred EEeeeCCCCCCCCCHHHHHHHHHHhccC
Q psy4673 82 STAGIHPHEAKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 82 ~~~GiHP~~~~~~~~~~~~~l~~~l~~~ 109 (171)
.=+|+|--.-. ..++.+++|+.++..+
T Consensus 128 ~d~~~h~~~e~-~~~~~~~~l~~~~~~g 154 (376)
T TIGR02318 128 ADHRLHLRCEL-PNEEVLPELEELIDDP 154 (376)
T ss_pred hhceeEEEEEe-cCccHHHHHHHHhcCC
Confidence 45666653311 1234578888886554
No 173
>PRK12393 amidohydrolase; Provisional
Probab=69.44 E-value=77 Score=27.61 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=18.4
Q ss_pred HHhcCCCEEEEeC------CChhhHHHHHHHHHhcCCcE
Q psy4673 48 AKDSGVQKIIAIG------SSLKSSKEALRLARIYPGMV 80 (171)
Q Consensus 48 a~~~gv~~~i~v~------~~~~~~~~~~~l~~~~~~~v 80 (171)
+-..|+..+.... ..++.++.+.+.+...+-++
T Consensus 115 ~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~ 153 (457)
T PRK12393 115 LLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRF 153 (457)
T ss_pred HHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeE
Confidence 4567887766442 22344566666666655333
No 174
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=69.25 E-value=2.7 Score=34.08 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=26.2
Q ss_pred ceEeeccCCCCCCCC---------CCHHHHHHHHHhcCCCEEEEe
Q psy4673 24 VLIDVGANLTNRKFG---------RDLESVVQRAKDSGVQKIIAI 59 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~---------~d~~~vl~~a~~~gv~~~i~v 59 (171)
.|||+|+|+....+. .......+++...||..++..
T Consensus 5 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~ 49 (333)
T PF01979_consen 5 GLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDT 49 (333)
T ss_dssp -EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcC
Confidence 489999999875432 234556678889999888776
No 175
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=69.06 E-value=46 Score=24.86 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhh---------H-HHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKS---------S-KEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS- 107 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~---------~-~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~- 107 (171)
++..++++++++.|+. +.+++..+.. + ..+..+.+...-.....++.++....+.....+..+.+.+.
T Consensus 45 pgv~e~L~~Lk~~G~~-l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~ 123 (166)
T TIGR01664 45 PEIPAKLQELDDEGYK-IVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNS 123 (166)
T ss_pred CCHHHHHHHHHHCCCE-EEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCC
Confidence 6788999999999985 4444443332 2 12334445443222345555654333333344544444332
Q ss_pred ---cCCeEEEecCC
Q psy4673 108 ---NTGNSTMNRYN 118 (171)
Q Consensus 108 ---~~~vvaIGDy~ 118 (171)
-..++.|||..
T Consensus 124 ~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 124 PIKMTRSFYVGDAA 137 (166)
T ss_pred CCCchhcEEEECCC
Confidence 24689999753
No 176
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=68.81 E-value=65 Score=26.53 Aligned_cols=90 Identities=10% Similarity=-0.064 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCChhh--------------H-HHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH-
Q psy4673 42 ESVVQRAKDSGVQKIIAIGSSLKS--------------S-KEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL- 105 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~~~~~--------------~-~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~- 105 (171)
...+.++...|| ..+-+-.+|.. . +.+.+..++++-++...+++.+.. ..+.+....++
T Consensus 75 ~~~~~e~~~~Gv-~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~----~~~~~~~~~~~~ 149 (324)
T TIGR01430 75 YEYVEKAAKDGV-VYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHK----QPEAAEETLELA 149 (324)
T ss_pred HHHHHHHHHcCC-EEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCC----CHHHHHHHHHHH
Confidence 344456778898 45655444421 1 112223445653333345555432 12333333332
Q ss_pred hcc-C-CeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 106 VSN-T-GNSTMN-RYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 106 l~~-~-~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
+.. . .++++| .......+ .+.|.+.+++|++
T Consensus 150 ~~~~~~~vvg~~l~~~e~~~~----~~~~~~~~~~A~~ 183 (324)
T TIGR01430 150 KPYKEQTIVGFGLAGDERGGP----PPDFVRAFAIARE 183 (324)
T ss_pred HhhccCcEEEecCCCCCCCCC----HHHHHHHHHHHHH
Confidence 222 2 366666 21111112 3457777899993
No 177
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=67.97 E-value=55 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred cCCCCCCCC-CCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673 30 ANLTNRKFG-RDLESVVQRAKDSGVQKIIAIGSSL 63 (171)
Q Consensus 30 ~HL~~~~~~-~d~~~vl~~a~~~gv~~~i~v~~~~ 63 (171)
.|+...... ..+...+..+...||+.++++..|+
T Consensus 386 ~Hltc~d~n~~~l~~~L~~~~~~Gv~nILaLrGD~ 420 (612)
T PRK08645 386 VHITCRDRNLIGLQSHLLGLHALGIRNVLAITGDP 420 (612)
T ss_pred eEecCCCcCHHHHHHHHHHHHHcCCceEEEccCCC
Confidence 466654221 2345666677788888887777664
No 178
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=67.46 E-value=66 Score=26.14 Aligned_cols=102 Identities=16% Similarity=0.256 Sum_probs=56.7
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN 111 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v 111 (171)
.....++.+.+.||++++..|+. .++..++++.+.+ .++++-..+|+=.... ++.++..+. +++-.+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~----~~~i~~a~~-a~~~G~ 97 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNST----AEAIELTKF-AEKAGA 97 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchH----HHHHHHHHH-HHHcCC
Confidence 46778888899999998877764 5666677665433 2333322345433221 234444433 333333
Q ss_pred --EEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 112 --STMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 112 --vaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
+.+. -+|... + |.++++..-++|. ..++|+++...
T Consensus 98 d~v~~~pP~~~~~-~---~~~i~~~~~~ia~-------------~~~~pv~lYn~ 135 (292)
T PRK03170 98 DGALVVTPYYNKP-T---QEGLYQHFKAIAE-------------ATDLPIILYNV 135 (292)
T ss_pred CEEEECCCcCCCC-C---HHHHHHHHHHHHh-------------cCCCCEEEEEC
Confidence 3333 444432 2 4455555566676 66788777654
No 179
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=67.23 E-value=77 Score=27.04 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=22.1
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS 62 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~ 62 (171)
+..=.|||+. .+.+ .+.+|-+.|...++.=+..
T Consensus 76 VPValHLDHg---~~~e-~i~~ai~~GftSVMiDgS~ 108 (347)
T PRK09196 76 IPVVMHQDHG---NSPA-TCQRAIQLGFTSVMMDGSL 108 (347)
T ss_pred CcEEEECCCC---CCHH-HHHHHHHcCCCEEEecCCC
Confidence 3456899985 3544 4667888899876554553
No 180
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=67.22 E-value=65 Score=25.99 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC--
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT-- 109 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~-- 109 (171)
.....++.+.+.||.++++.|+. .++..++++.+.+. .+.+-..+|+-.... ++.++..+. +++-
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~----~~~~~~a~~-a~~~G~ 96 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNT----AEAIELTKR-AEKAGA 96 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccH----HHHHHHHHH-HHHcCC
Confidence 46777888889999998877764 46666776654332 333333455544322 233444333 3332
Q ss_pred CeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 110 GNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 110 ~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
..+.+. -+|+.. + |.+++...-++|. ..++|+++...
T Consensus 97 d~v~~~~P~~~~~-~---~~~l~~~~~~ia~-------------~~~~pi~lYn~ 134 (284)
T cd00950 97 DAALVVTPYYNKP-S---QEGLYAHFKAIAE-------------ATDLPVILYNV 134 (284)
T ss_pred CEEEEcccccCCC-C---HHHHHHHHHHHHh-------------cCCCCEEEEEC
Confidence 233344 444433 2 3445555566676 66788887765
No 181
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=66.87 E-value=32 Score=28.05 Aligned_cols=36 Identities=11% Similarity=0.307 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHh
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI 75 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~ 75 (171)
..+.++++|.++|+++++++-..+++..+..+.+++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 456667777777777777666666655544444433
No 182
>PRK06801 hypothetical protein; Provisional
Probab=66.23 E-value=74 Score=26.27 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=29.8
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh------hHHHHHHHHHhcC
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK------SSKEALRLARIYP 77 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~------~~~~~~~l~~~~~ 77 (171)
+..=.|||+.. +. +.+.+|-+.|+..+..=+.... ...++.++++.+.
T Consensus 75 vpV~lHlDH~~---~~-e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~g 128 (286)
T PRK06801 75 IPVVLNLDHGL---HF-EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVG 128 (286)
T ss_pred CCEEEECCCCC---CH-HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34567999853 44 5577888889987666555432 2334455566664
No 183
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=66.02 E-value=74 Score=26.18 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHH
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEA 69 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~ 69 (171)
+++.++++.|++.||. |++-.+ |......
T Consensus 72 ~di~elv~yA~~rgI~--viPEiD~PGH~~a~ 101 (303)
T cd02742 72 AQLKDIIEYAAARGIE--VIPEIDMPGHSTAF 101 (303)
T ss_pred HHHHHHHHHHHHcCCE--EEEeccchHHHHHH
Confidence 4788999999999995 555554 5554443
No 184
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=64.95 E-value=38 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=32.7
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhH--HHHHHHHHhcCC
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL-----------KSS--KEALRLARIYPG 78 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~--~~~~~l~~~~~~ 78 (171)
=+|+|.|+-.+ +.+..|..+||..++--|+.| ..| .++++-++.+|-
T Consensus 131 GiDtHiHfI~P-------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~ 190 (568)
T COG0804 131 GIDTHIHFICP-------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPM 190 (568)
T ss_pred cccceeEEecH-------HHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCce
Confidence 48999998763 456778889998887655543 334 566666777773
No 185
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.29 E-value=23 Score=30.67 Aligned_cols=17 Identities=6% Similarity=-0.087 Sum_probs=12.8
Q ss_pred hHhhhcCceEEEecCCC
Q psy4673 150 RKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 150 ~~~~~~~p~iiH~fsg~ 166 (171)
...+.+.|+-+|....+
T Consensus 228 ~a~~~g~~v~~HA~~~~ 244 (406)
T COG1228 228 AALKAGIPVKAHAHGAD 244 (406)
T ss_pred HHHHCCCceEEEecccc
Confidence 33488899999987665
No 186
>KOG4549|consensus
Probab=63.88 E-value=27 Score=25.63 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=36.0
Q ss_pred ceEeeccCCCCCCC-------------CCCHHHHHHHHHhcCCCEEEEe-CCChhhHHHHHHHHH
Q psy4673 24 VLIDVGANLTNRKF-------------GRDLESVVQRAKDSGVQKIIAI-GSSLKSSKEALRLAR 74 (171)
Q Consensus 24 ~~iDtH~HL~~~~~-------------~~d~~~vl~~a~~~gv~~~i~v-~~~~~~~~~~~~l~~ 74 (171)
.++|+|.|....++ .+|...+|...++.||.-+++- +..++-....+++.+
T Consensus 19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fk 83 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFK 83 (144)
T ss_pred EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhc
Confidence 48999988876433 3588999999999999754432 335666666676544
No 187
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=63.42 E-value=20 Score=30.59 Aligned_cols=83 Identities=8% Similarity=0.133 Sum_probs=43.5
Q ss_pred ceEeeccCCCC----CC----C--CCCHHHHHHHHHhcCCCEEEEe-CCC--h------hhHH-HHHHHHH---hcCCcE
Q psy4673 24 VLIDVGANLTN----RK----F--GRDLESVVQRAKDSGVQKIIAI-GSS--L------KSSK-EALRLAR---IYPGMV 80 (171)
Q Consensus 24 ~~iDtH~HL~~----~~----~--~~d~~~vl~~a~~~gv~~~i~v-~~~--~------~~~~-~~~~l~~---~~~~~v 80 (171)
.+||+|+|... +. + .+++..--..|...|+..++.. ... + .++. .+.+..+ ..+. .
T Consensus 53 G~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 131 (383)
T PRK15446 53 GLVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGL-L 131 (383)
T ss_pred CeEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCc-h
Confidence 39999995431 11 1 1344455567788999887763 222 2 3332 1112112 2232 4
Q ss_pred EEEeeeCCCCCCCCCHHHHHHHHHHhcc
Q psy4673 81 YSTAGIHPHEAKSWDEDYIDQLRDLVSN 108 (171)
Q Consensus 81 ~~~~GiHP~~~~~~~~~~~~~l~~~l~~ 108 (171)
++=+|+|--.. .++++.+++|..+++.
T Consensus 132 ~vD~~~h~~~~-~~~~~~~~~l~~~~~~ 158 (383)
T PRK15446 132 RADHRLHLRCE-LTNPDALELFEALLAH 158 (383)
T ss_pred hccceeEEEEE-ecCcchHHHHHHHhcC
Confidence 55566664322 2334467888888754
No 188
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=63.42 E-value=81 Score=25.73 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN 111 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v 111 (171)
....+++.+.+.||.+++..|+. .++..++++.+.+. ++++-..+|+-. . ..+.++..+. +++..+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~----t~~~i~~a~~-a~~~Ga 95 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-G----TATAIAYAQA-AEKAGA 95 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-C----HHHHHHHHHH-HHHhCC
Confidence 46778888899999998887763 45666666643332 222222344421 1 1234444333 343333
Q ss_pred --EEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 112 --STMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 112 --vaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
+.+- .||... + |..++...-++|. ..++|+++-.++|
T Consensus 96 d~v~~~pP~y~~~-~---~~~i~~~f~~v~~-------------~~~~pi~lYn~~g 135 (289)
T cd00951 96 DGILLLPPYLTEA-P---QEGLYAHVEAVCK-------------STDLGVIVYNRAN 135 (289)
T ss_pred CEEEECCCCCCCC-C---HHHHHHHHHHHHh-------------cCCCCEEEEeCCC
Confidence 3333 666533 2 4555555566777 6678888776655
No 189
>KOG2584|consensus
Probab=63.38 E-value=40 Score=29.86 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=30.1
Q ss_pred eEeeccCCCCCCCC-CCHHHHH---HHHHhcCCCEEEEeCC------ChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 25 LIDVGANLTNRKFG-RDLESVV---QRAKDSGVQKIIAIGS------SLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 25 ~iDtH~HL~~~~~~-~d~~~vl---~~a~~~gv~~~i~v~~------~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
.||+|+||..+-.. ...+.+. +.|-.-|...+|..-. ..+.+++-++.++ | .+.+=+|+|=
T Consensus 68 gID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad--~-k~cCDyglhv 138 (522)
T KOG2584|consen 68 GIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWAD--P-KVCCDYGLHV 138 (522)
T ss_pred ccCccceeccccCCccchhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcC--C-ceeeeeeeeE
Confidence 69999999975211 1233333 3344444433332111 1233444444333 3 3677777773
No 190
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=62.44 E-value=1e+02 Score=26.61 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=9.2
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|+..
T Consensus 60 GlVn~H~H~~~ 70 (435)
T PRK15493 60 GLVNTHTHVVM 70 (435)
T ss_pred ceeecccCccc
Confidence 39999999963
No 191
>PRK05826 pyruvate kinase; Provisional
Probab=62.35 E-value=1.1e+02 Score=27.06 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--cCC
Q psy4673 43 SVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--RYN 118 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--Dy~ 118 (171)
..++++.+.|+.+++.+.+ +.++...+.++.+.... .+...+=| .+.+.++.|++.+..--.+-|| |..
T Consensus 177 ~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakI-------Et~eav~nldeI~~~~DgImIgrgDLg 249 (465)
T PRK05826 177 ADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKI-------ERAEAVDNIDEIIEASDGIMVARGDLG 249 (465)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEE-------cCHHHHHhHHHHHHHcCEEEECcchhh
Confidence 4467899999998777665 57788887777655322 12111111 2345677777776654555666 765
Q ss_pred CCCC---cHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673 119 SSQW---ITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH 161 (171)
Q Consensus 119 ~~~~---~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH 161 (171)
-.-. -...| ++.++.|+ +.++|+++=
T Consensus 250 ~elg~~~v~~~q----k~Ii~~c~-------------~~gKpvi~A 278 (465)
T PRK05826 250 VEIPDEEVPGLQ----KKIIRKAR-------------EAGKPVITA 278 (465)
T ss_pred hhcCcHhHHHHH----HHHHHHHH-------------HcCCCEEEE
Confidence 4322 22334 45567777 778887753
No 192
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=62.32 E-value=78 Score=25.17 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-hh------------hHHHHHHHHHhcCCcEEEE--eeeCCC
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS-LK------------SSKEALRLARIYPGMVYST--AGIHPH 89 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~-~~------------~~~~~~~l~~~~~~~v~~~--~GiHP~ 89 (171)
.+|.|.|.....-..+..+.+++|.+.|...+.. +-. +. .++....+.+.|+-.|+.. +++.|.
T Consensus 2 ~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~i-TdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~ 80 (237)
T COG1387 2 KIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAI-TDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD 80 (237)
T ss_pred CcccccCcccccCCCCHHHHHHHHHHcCCeEEEE-eccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCC
Confidence 4799999887543457788899999999976433 321 11 1222333444454112211 334443
Q ss_pred CCCCCC------------------------HHHHHHHHHHhccCCeEEEe--cCCCC-CCcHHHHHHHHHHHHHHhhH--
Q psy4673 90 EAKSWD------------------------EDYIDQLRDLVSNTGNSTMN--RYNSS-QWITEIKQTLFTTFVDITAL-- 140 (171)
Q Consensus 90 ~~~~~~------------------------~~~~~~l~~~l~~~~vvaIG--Dy~~~-~~~~~~Q~~~F~~ql~lA~~-- 140 (171)
..-+.. ....+.+...+..+.+-.|| ++..- ......=....++.+++|.+
T Consensus 81 ~~~d~~~~~~~~lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 81 GSLDFLDEILKELDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred CCcccchhhHhhcCEEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC
Confidence 311111 12233444445556666778 54211 11112223457788899998
Q ss_pred ---HHHhhhhh----HhH----hhhcCceEEEecCCCccc
Q psy4673 141 ---CEFCQKNF----SRK----EHLNRHLWVHKDSSMMKE 169 (171)
Q Consensus 141 ---~iH~r~a~----~~~----~~~~~p~iiH~fsg~~~e 169 (171)
-|++|... .++ .+.+.++.|=|.+=.+.+
T Consensus 161 ~aleins~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~ 200 (237)
T COG1387 161 KALEINSRPGRLDPNSEILRLARELGVKLAIGTDAHRPGD 200 (237)
T ss_pred cEEeecCCcCccCchHHHHHHHHHhCCeEEeecCcCChhh
Confidence 37777432 122 245667777666554443
No 193
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=62.19 E-value=67 Score=24.37 Aligned_cols=79 Identities=8% Similarity=-0.062 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--cCCeEEEe
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--NTGNSTMN 115 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~~~vvaIG 115 (171)
.+...++++.+++.|+.-+++.+.........++... ....+-..+|-......+...+.+..+.+.+. ..+++.||
T Consensus 95 ~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~-l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ig 173 (226)
T PRK13222 95 YPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALG-IADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVG 173 (226)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC-CccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEEC
Confidence 4678899999999998644444433333333333211 11112223343332222223334444443332 24688999
Q ss_pred cC
Q psy4673 116 RY 117 (171)
Q Consensus 116 Dy 117 (171)
|-
T Consensus 174 D~ 175 (226)
T PRK13222 174 DS 175 (226)
T ss_pred CC
Confidence 64
No 194
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=62.09 E-value=68 Score=24.38 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc--CCeEEE
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN--TGNSTM 114 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~--~~vvaI 114 (171)
+.+...++++.+++.|+.-.|+.+.........++...-. ..+-..+|..-....+..++.+..+.+.+.- .+++.|
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 3468899999999999864444444444444444322111 1122223322111112223344444443332 368889
Q ss_pred ecC
Q psy4673 115 NRY 117 (171)
Q Consensus 115 GDy 117 (171)
||-
T Consensus 162 GDs 164 (214)
T PRK13288 162 GDN 164 (214)
T ss_pred CCC
Confidence 964
No 195
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=61.97 E-value=9.8 Score=27.52 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 125 EIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 125 ~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+.+...|.+.++- ..+|+.+||.+|.
T Consensus 72 ~~~v~~f~~~~~~----------------~~~pvL~HC~sG~ 97 (135)
T TIGR01244 72 PDDVETFRAAIGA----------------AEGPVLAYCRSGT 97 (135)
T ss_pred HHHHHHHHHHHHh----------------CCCCEEEEcCCCh
Confidence 3456677666642 3489999999986
No 196
>PRK02134 hypothetical protein; Provisional
Probab=61.94 E-value=22 Score=28.66 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=38.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673 30 ANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH 87 (171)
Q Consensus 30 ~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH 87 (171)
.+-|+.-+......-+-++.+.|+-.-..+=++-..|+.+.++++.+|+ + .+|+|
T Consensus 7 inADDfG~s~~vn~gI~~~~~~G~ltstslM~n~p~~~~a~~l~~~~~~-l--~vGlH 61 (249)
T PRK02134 7 VNADDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYPS-L--GVGMH 61 (249)
T ss_pred EECCcCCCCHHHHHHHHHHHHCCCeeEEEeecCCchHHHHHHHHHhCCC-C--CEEEE
Confidence 3456666667777778888888975433333344556778999999986 2 78888
No 197
>PLN02591 tryptophan synthase
Probab=61.65 E-value=33 Score=27.72 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
++.+++.+.|++.|+..+.+++-+.. -+++..+++..++++| .+|.
T Consensus 118 ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY-~Vs~ 163 (250)
T PLN02591 118 EETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVY-LVSS 163 (250)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEE-EeeC
Confidence 45678899999999987766644332 2244555566667666 4444
No 198
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.58 E-value=31 Score=27.96 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEE
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYS 82 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~ 82 (171)
++.+++++.+++.|+..+..++.+. .-+++..+++..+++||+
T Consensus 129 ee~~~~~~~~~~~gl~~I~lvap~t-~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIFLVAPTT-TDERLKKIASHASGFVYY 171 (258)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHhCCCcEEE
Confidence 4677889999999998765444432 123455556666676765
No 199
>PLN02858 fructose-bisphosphate aldolase
Probab=61.26 E-value=1.2e+02 Score=30.86 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=61.4
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh--h----hHHHHHHHHHhcCCcEEEEeeeCCCCCC-------
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL--K----SSKEALRLARIYPGMVYSTAGIHPHEAK------- 92 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~--~----~~~~~~~l~~~~~~~v~~~~GiHP~~~~------- 92 (171)
+..=.|||+. .+. +.+.+|-+.|...++.=+... + ..+++.+++..+.-.|=.=+|-=+-.-.
T Consensus 1170 vpV~lHLDHg---~~~-~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1170 VPITVHFDHG---TSK-HELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CCEEEECCCC---CCH-HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 3455899985 244 456777788998755544432 1 1233344455443112222222221100
Q ss_pred --CCCHHHHHHHHHHhccCC----eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh---cCceEE
Q psy4673 93 --SWDEDYIDQLRDLVSNTG----NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL---NRHLWV 160 (171)
Q Consensus 93 --~~~~~~~~~l~~~l~~~~----vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~---~~p~ii 160 (171)
.++ .-++..++++... .|+|| =.|.. .....+.+.++ ++.+ .. +.|+++
T Consensus 1246 ~~~~T--~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-~~p~l~~~~l~---~i~~-------------~~~~~~vpLVl 1306 (1378)
T PLN02858 1246 EAKLT--DVDQAKEFIDETGIDALAVCIGNVHGKYPA-SGPNLRLDLLK---ELRA-------------LSSKKGVLLVL 1306 (1378)
T ss_pred ccCCC--CHHHHHHHHHhcCCcEEeeecccccccCCC-CCCccCHHHHH---HHHH-------------HhcCCCCcEEE
Confidence 011 2344555555432 45788 22221 12234544443 3444 44 689999
Q ss_pred EecCCCccc
Q psy4673 161 HKDSSMMKE 169 (171)
Q Consensus 161 H~fsg~~~e 169 (171)
|.-||.++|
T Consensus 1307 HGgSG~~~~ 1315 (1378)
T PLN02858 1307 HGASGLPES 1315 (1378)
T ss_pred eCCCCCCHH
Confidence 999998876
No 200
>KOG4175|consensus
Probab=60.34 E-value=47 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYP 77 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~ 77 (171)
..+..++.|+++|+.++|++-..|++....++-++++.
T Consensus 111 G~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~g 148 (268)
T KOG4175|consen 111 GVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHG 148 (268)
T ss_pred hHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcC
Confidence 45778889999999999999999998888887777653
No 201
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=59.94 E-value=95 Score=25.38 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhc-CCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIY-PGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG 110 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~-~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~ 110 (171)
+....+++.+.+.||++++..|+. .++..++++.+.+. .+++-..+|+=.. .++.++..+. +.+..
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~-----t~~ai~~a~~-a~~~G 99 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGN-----TSDAIEIARL-AEKAG 99 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCcc-----HHHHHHHHHH-HHHhC
Confidence 346788888999999998877763 56677776654332 3332223443111 2344544443 33333
Q ss_pred eEEEe---cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 111 NSTMN---RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 111 vvaIG---Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
+-||- .||+..+ |..+++..-++|. ..+.|+++-.++|
T Consensus 100 adav~~~pP~y~~~s----~~~i~~~f~~v~~-------------a~~~pvilYn~~g 140 (296)
T TIGR03249 100 ADGYLLLPPYLINGE----QEGLYAHVEAVCE-------------STDLGVIVYQRDN 140 (296)
T ss_pred CCEEEECCCCCCCCC----HHHHHHHHHHHHh-------------ccCCCEEEEeCCC
Confidence 33333 6666432 4556666667776 6678877765554
No 202
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=59.65 E-value=1.1e+02 Score=26.09 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=21.4
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS 62 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~ 62 (171)
..=.|||+. .+.+ .+.+|-+.|...++.=++.
T Consensus 75 PValHLDHg---~~~e-~i~~Ai~~GFtSVMiDgS~ 106 (347)
T TIGR01521 75 PVVMHQDHG---NSPA-TCQRAIQLGFTSVMMDGSL 106 (347)
T ss_pred cEEEECCCC---CCHH-HHHHHHHcCCCEEeecCcC
Confidence 445799985 3544 4677788899876554553
No 203
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.64 E-value=94 Score=25.23 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHhcCCcEEEEee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
+....+++...+.||+++++.|+. .++..++++.+.+.-+.++..+|
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 356778888899999998887774 45566666544433334655555
No 204
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=59.64 E-value=91 Score=25.08 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCc-EE------EEeeeC--CCCCC---C--------CCHHHHHH
Q psy4673 43 SVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGM-VY------STAGIH--PHEAK---S--------WDEDYIDQ 101 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~-v~------~~~GiH--P~~~~---~--------~~~~~~~~ 101 (171)
..++++-+.|..+++.+-+ +.++.+++++.++ ||-. .. .+.|+- |.+.. + .+.+.++.
T Consensus 75 ~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~k-ypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n 153 (249)
T TIGR03239 75 VIIKRLLDIGFYNFLIPFVESAEEAERAVAATR-YPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDN 153 (249)
T ss_pred HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcC-CCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHh
Confidence 5568888889988888776 4667777766654 5421 11 111111 11111 0 12346677
Q ss_pred HHHHhccCCe--EEEe--cCCC------CCCcHHHHHHHHHHHHHHhh
Q psy4673 102 LRDLVSNTGN--STMN--RYNS------SQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 102 l~~~l~~~~v--vaIG--Dy~~------~~~~~~~Q~~~F~~ql~lA~ 139 (171)
+++++.-+.+ +.|| |+.. .....+. ++...+-+..|+
T Consensus 154 ~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v-~~a~~~v~~aa~ 200 (249)
T TIGR03239 154 VDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDV-QKAIRHIFDRAA 200 (249)
T ss_pred HHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHH-HHHHHHHHHHHH
Confidence 7777766654 4588 6532 1223343 345666677777
No 205
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.51 E-value=94 Score=25.19 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC-
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG- 110 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~- 110 (171)
....+++.+.+.||.++++.|+. .++..++++.+.+ ..+++-..+|+=... .++.++..+. +++..
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s----~~~~i~~a~~-a~~~Ga 94 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA----TEEAISLTKF-AEDVGA 94 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc----HHHHHHHHHH-HHHcCC
Confidence 46778888889999998887763 5666666665433 233333345542211 1233333333 33332
Q ss_pred -eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 111 -NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 111 -vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
.+.+. -||+..+ |.+++...-++|. ..++|+++...
T Consensus 95 d~v~v~pP~y~~~~----~~~i~~~~~~i~~-------------~~~~pi~lYn~ 132 (285)
T TIGR00674 95 DGFLVVTPYYNKPT----QEGLYQHFKAIAE-------------EVDLPIILYNV 132 (285)
T ss_pred CEEEEcCCcCCCCC----HHHHHHHHHHHHh-------------cCCCCEEEEEC
Confidence 23333 5555332 4556666677777 66788776653
No 206
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=59.41 E-value=57 Score=24.78 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcE--EEEeeeCCCCCCCCCHHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMV--YSTAGIHPHEAKSWDEDYIDQLRD 104 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v--~~~~GiHP~~~~~~~~~~~~~l~~ 104 (171)
.++..++||.+.|+..+++.+++=....+++++.+..=..| -.-.|++-..-.+++++.-+.|++
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 46667799999999998888888788888888777542221 222444433333344444444444
No 207
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=58.91 E-value=99 Score=25.25 Aligned_cols=106 Identities=11% Similarity=0.151 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCc-E-------EEEeeeCC--CCCC---C--------CCHHHHH
Q psy4673 43 SVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGM-V-------YSTAGIHP--HEAK---S--------WDEDYID 100 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~-v-------~~~~GiHP--~~~~---~--------~~~~~~~ 100 (171)
..++++-+.|..+++++-+ +.++.+++++.++ ||-. . ..+.++.+ .+.. + .+.+.++
T Consensus 81 ~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~r-YpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~ 159 (267)
T PRK10128 81 PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATR-YPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALD 159 (267)
T ss_pred HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcC-CCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHH
Confidence 4567888889888888776 4667777776655 6521 0 01222222 1111 0 0234566
Q ss_pred HHHHHhccCCe--EEEe--cCCC------CCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 101 QLRDLVSNTGN--STMN--RYNS------SQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 101 ~l~~~l~~~~v--vaIG--Dy~~------~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
.+++.+.-+.+ +.|| |+.. .....+.| +.+++-++.|+ +.++|+-++..
T Consensus 160 n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~-~ai~~v~~a~~-------------~~Gk~~G~~~~ 218 (267)
T PRK10128 160 NLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQ-RIIETSIRRIR-------------AAGKAAGFLAV 218 (267)
T ss_pred hHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHH-HHHHHHHHHHH-------------HcCCeEEEcCC
Confidence 77777766654 4577 6532 22334444 57788889998 66776554443
No 208
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=58.69 E-value=41 Score=32.94 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=35.8
Q ss_pred eEeeccCCCCC--CCCCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcC
Q psy4673 25 LIDVGANLTNR--KFGRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYP 77 (171)
Q Consensus 25 ~iDtH~HL~~~--~~~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~ 77 (171)
++|.|||-... .-...+++++++|++.|... ++++- +.....+..+.++++.
T Consensus 5 fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~a-vAiTDh~~l~g~~~f~~~~~~~g 60 (1046)
T PRK05672 5 YAELHCHSNFSFLDGASHPEELVERAARLGLRA-LAITDECGLAGVVRAAEAAKELG 60 (1046)
T ss_pred eeeccccccCcccccCCCHHHHHHHHHHcCCCE-EEEEeCCcchhHHHHHHHHHHCC
Confidence 79999998654 11247899999999999975 44442 3444555556666654
No 209
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=58.45 E-value=1.1e+02 Score=25.49 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC---CC-CHH-
Q psy4673 29 GANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK---SW-DED- 97 (171)
Q Consensus 29 H~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~---~~-~~~- 97 (171)
=.|||+.. +. +.+.+|-+.|+..++.=|... ...+++++++..+.-.|=.=+|.=--.-. .. .++
T Consensus 79 ~lHlDHg~---~~-~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~ 154 (286)
T COG0191 79 ALHLDHGA---SF-EDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPAD 154 (286)
T ss_pred EEECCCCC---CH-HHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhh
Confidence 36888852 33 445678888998754434321 22344455555554223233332221110 01 111
Q ss_pred --HHHHHHHHhccC----CeEEEe----cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCc
Q psy4673 98 --YIDQLRDLVSNT----GNSTMN----RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMM 167 (171)
Q Consensus 98 --~~~~l~~~l~~~----~vvaIG----Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~ 167 (171)
..++-.+.++.. -.+||| -|-. .....+-..+. ++.+ ..++|+++|.-||.+
T Consensus 155 ~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~--~~p~L~~~~L~---~i~~-------------~~~~PlVlHGgSGip 216 (286)
T COG0191 155 LTDPEEALEFVERTGIDALAAAIGNVHGVYKP--GNPKLDFDRLK---EIQE-------------AVSLPLVLHGGSGIP 216 (286)
T ss_pred hCCHHHHHHHHhccCcceeeeeccccccCCCC--CCCCCCHHHHH---HHHH-------------HhCCCEEEeCCCCCC
Confidence 123333344432 246788 3322 12223333332 3333 445999999999988
Q ss_pred cc
Q psy4673 168 KE 169 (171)
Q Consensus 168 ~e 169 (171)
+|
T Consensus 217 ~~ 218 (286)
T COG0191 217 DE 218 (286)
T ss_pred HH
Confidence 75
No 210
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=58.39 E-value=32 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 43 SVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
+-++++.+.|+.++|.-+.-.++.+.+.+++++||++|..++-..=
T Consensus 88 ~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~ 133 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARD 133 (241)
T ss_pred HHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccC
Confidence 4456677789998777666788899999999999987766555544
No 211
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=57.74 E-value=31 Score=29.43 Aligned_cols=51 Identities=4% Similarity=-0.029 Sum_probs=27.5
Q ss_pred EEe-cCCCC--CCcHHHHHHHHHHHHHHhhH-----HHHhhhh--------------hHhHh-hhcCceEEEec
Q psy4673 113 TMN-RYNSS--QWITEIKQTLFTTFVDITAL-----CEFCQKN--------------FSRKE-HLNRHLWVHKD 163 (171)
Q Consensus 113 aIG-Dy~~~--~~~~~~Q~~~F~~ql~lA~~-----~iH~r~a--------------~~~~~-~~~~p~iiH~f 163 (171)
|+| |---. ..+.+.=+..++.|++.-++ |+=+-+| |++++ +...|+|+||-
T Consensus 113 GaGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVILHWL 186 (382)
T PF06187_consen 113 GAGTDQLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVILHWL 186 (382)
T ss_dssp EE--TTS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EEEEEE
T ss_pred ecCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 566 75432 23455557889999998887 3322221 33343 45799999994
No 212
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.59 E-value=37 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
++.+++++.+++.|+..+..++.+- .-+++..+++...++||+ ++
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~PtT-~~eri~~i~~~a~gFIY~-vS 175 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARAAPGCIYL-VS 175 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhCCCcEEE-Ec
Confidence 4678889999999998765554432 233555566666666664 44
No 213
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=57.47 E-value=18 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLA 73 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~ 73 (171)
..+.++++|.++|++++|++-..+++.....+.+
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~ 136 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPPEESEELREAA 136 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHH
T ss_pred chHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Confidence 3566777777777777777777666555444433
No 214
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=57.40 E-value=44 Score=27.32 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCEEEE---eCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC
Q psy4673 42 ESVVQRAKDSGVQKIIA---IGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~---v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~ 109 (171)
-+++.+|-++|. .+++ ++.++++.+++++++++. + +..++|+.-.+.+ ....+++++.+.
T Consensus 81 ~e~~~~AL~aGk-hVl~EKPla~t~~ea~~l~~~a~~~-~-~~l~v~~~~Rf~p-----~~~~~k~li~~g 143 (342)
T COG0673 81 AELALAALEAGK-HVLCEKPLALTLEEAEELVELARKA-G-VKLMVGFNRRFDP-----AVQALKELIDSG 143 (342)
T ss_pred HHHHHHHHhcCC-EEEEcCCCCCCHHHHHHHHHHHHHc-C-CceeeehhhhcCH-----HHHHHHHHHhcC
Confidence 456677888887 4555 677899999999999998 4 4668998876653 567778877664
No 215
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=56.91 E-value=67 Score=25.97 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCc-EE------EE--eeeCCCCCCCC-----------CHHHHHH
Q psy4673 43 SVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGM-VY------ST--AGIHPHEAKSW-----------DEDYIDQ 101 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~-v~------~~--~GiHP~~~~~~-----------~~~~~~~ 101 (171)
..++++.+.|..+++++-+ +.++.+++++.++ ||-. .. .+ +|.-|.+.... +.+.++.
T Consensus 82 ~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~k-ypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~n 160 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPFVETAEEARRAVASTR-YPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDN 160 (256)
T ss_pred HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcC-CCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHH
Confidence 4567777888888877776 4666777666655 4421 00 11 11112111111 2346677
Q ss_pred HHHHhccCCe--EEEe--cCCC------CCCcHHHHHHHHHHHHHHhh
Q psy4673 102 LRDLVSNTGN--STMN--RYNS------SQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 102 l~~~l~~~~v--vaIG--Dy~~------~~~~~~~Q~~~F~~ql~lA~ 139 (171)
+++++..+++ +.|| |+.. +....+.+ ....+-+..|+
T Consensus 161 i~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~-~a~~~v~~aa~ 207 (256)
T PRK10558 161 VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQ-KAIQHIFARAK 207 (256)
T ss_pred HHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHH-HHHHHHHHHHH
Confidence 7777766654 4588 6532 12233333 35566667777
No 216
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=56.38 E-value=77 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcCCCE--EEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC-CCHHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQK--IIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS-WDEDYIDQLRD 104 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~--~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~~ 104 (171)
++.++++..++.|++. .+.++|..+.+...+. .-+ . ..-+++-|-...+ +.+..++.+++
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D-~-vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD---KVD-L-ILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCC-e-EEEEEecCCCCCceecHhHHHHHHH
Confidence 4667888888888875 3445566666655543 333 2 3347889977653 44444444443
No 217
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.60 E-value=1e+02 Score=24.45 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=23.2
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD 95 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~ 95 (171)
+..++++.+++.|++.++.+.... ..+++..+++.-++++| . |+-|-....+.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T-~~e~l~~~~~~~~~~l~-m-sv~~~~g~~~~ 169 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKF-PDLLIHRLSKLSPLFIY-Y-GLRPATGVPLP 169 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhCCCEEE-E-EeCCCCCCCch
Confidence 344555555666665433332211 11222233333444333 2 77776554443
No 218
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=55.31 E-value=30 Score=29.89 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=70.2
Q ss_pred ceEeeccCCCCC-CCCC-----CHHHHHHHHHhcCCCEEEE--eCCChhhHHHHHHHHHhcCC-cEEEEeeeC---CCCC
Q psy4673 24 VLIDVGANLTNR-KFGR-----DLESVVQRAKDSGVQKIIA--IGSSLKSSKEALRLARIYPG-MVYSTAGIH---PHEA 91 (171)
Q Consensus 24 ~~iDtH~HL~~~-~~~~-----d~~~vl~~a~~~gv~~~i~--v~~~~~~~~~~~~l~~~~~~-~v~~~~GiH---P~~~ 91 (171)
.|||+|.|=..- .+.+ .++.+-+...+.|+..++- ++.+++...++++-.+.+-. ..--.+|+| |+..
T Consensus 53 GfID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls 132 (380)
T COG1820 53 GFIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLS 132 (380)
T ss_pred cEEEEeecCcCcccccCccCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccC
Confidence 599999997642 2221 2555556667889987653 34456666666554333211 012358888 6543
Q ss_pred CCC----CH-----HHHHHHHHHhccCC--eEEEecCCCCCCcHHHHHHHHHH-HHHHhhHHHHhhhhhHhHh---hhcC
Q psy4673 92 KSW----DE-----DYIDQLRDLVSNTG--NSTMNRYNSSQWITEIKQTLFTT-FVDITALCEFCQKNFSRKE---HLNR 156 (171)
Q Consensus 92 ~~~----~~-----~~~~~l~~~l~~~~--vvaIGDy~~~~~~~~~Q~~~F~~-ql~lA~~~iH~r~a~~~~~---~~~~ 156 (171)
.+. ++ -..+++.+++...+ +.-|- .-.+......+...|.. .+-++ +=|+--.|+.+. +.+.
T Consensus 133 ~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vT-lAPE~~~~~e~i~~l~~~giivs--~GHS~Atye~~~~a~~~Ga 209 (380)
T COG1820 133 PEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVT-LAPELDGTKELIRLLANAGIVVS--IGHSNATYEQARAAFEAGA 209 (380)
T ss_pred HhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEE-ECCCCCCCHHHHHHHHhCCeEEE--ecCccccHHHHHHHHHhCc
Confidence 321 11 23456666654332 22222 01111111223333211 00000 456666666543 5567
Q ss_pred ceEEEecCCCc
Q psy4673 157 HLWVHKDSSMM 167 (171)
Q Consensus 157 p~iiH~fsg~~ 167 (171)
-.+-|.|+|..
T Consensus 210 ~~~THlfNaMs 220 (380)
T COG1820 210 TFVTHLFNAMS 220 (380)
T ss_pred cEEEeeccCCC
Confidence 78889998865
No 219
>PLN02334 ribulose-phosphate 3-epimerase
Probab=55.14 E-value=1e+02 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=18.4
Q ss_pred EEEeeeCCCCCCC-CCHHHHHHHHHHh---ccCCeEEEe
Q psy4673 81 YSTAGIHPHEAKS-WDEDYIDQLRDLV---SNTGNSTMN 115 (171)
Q Consensus 81 ~~~~GiHP~~~~~-~~~~~~~~l~~~l---~~~~vvaIG 115 (171)
+...+++|....+ +.+..++.+.++. ....++++|
T Consensus 143 i~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~G 181 (229)
T PLN02334 143 VLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDG 181 (229)
T ss_pred EEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeC
Confidence 3346778865543 4444455554432 223466776
No 220
>PRK09819 alpha-mannosidase; Provisional
Probab=54.91 E-value=28 Score=33.18 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=43.3
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC---CCCHHHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK---SWDEDYIDQ 101 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~---~~~~~~~~~ 101 (171)
.+=.|+|+|...+.. .++-..++ ...+..++++.+++|++.|.++.-.+.... +..++..++
T Consensus 7 ~~v~HtH~D~~Wl~~-~~~~~~~~--------------~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ 71 (875)
T PRK09819 7 HIVPHMHWDREWYFT-TERSRILL--------------VNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKER 71 (875)
T ss_pred EEeCCCCCChhhcCC-hHHhHHHH--------------HHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHH
Confidence 455799999754432 21111110 146778888888888754444433332221 123456778
Q ss_pred HHHHhccCCeEEEe
Q psy4673 102 LRDLVSNTGNSTMN 115 (171)
Q Consensus 102 l~~~l~~~~vvaIG 115 (171)
+++++++.++ .+|
T Consensus 72 ik~lV~~Grl-~~G 84 (875)
T PRK09819 72 VKKLVQAGKL-IIG 84 (875)
T ss_pred HHHHHHcCCE-eEC
Confidence 8888888887 457
No 221
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=54.57 E-value=1.2e+02 Score=24.89 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCC-----C
Q psy4673 26 IDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAKS-----W 94 (171)
Q Consensus 26 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~-----~ 94 (171)
+..=.|||+.. +. +.+.+|-+.|+..+..=+... +...++.+++..+.-.|-.-+|.-+-.-.. .
T Consensus 75 vpv~lhlDH~~---~~-e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGS---SY-ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCC---CH-HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 34557888752 33 466777788997654434332 123444555566643355556665421110 0
Q ss_pred CHHHHHHHHHHhc--cCCeEE--EecCC--CCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCcc
Q psy4673 95 DEDYIDQLRDLVS--NTGNST--MNRYN--SSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMK 168 (171)
Q Consensus 95 ~~~~~~~l~~~l~--~~~vva--IGDy~--~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~ 168 (171)
.-...++..+..+ ....+| +|-.+ +... .....+.+ =++.+ ..+.|+++|+-||-.+
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~-~~l~~e~L---~~i~~-------------~~~iPlv~hGgSGi~~ 213 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGE-PGLDFERL---KEIKE-------------LTNIPLVLHGASGIPE 213 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCC-CccCHHHH---HHHHH-------------HhCCCEEEECCCCCCH
Confidence 0012333344433 233455 67222 1111 12233333 34555 6679999999998765
Q ss_pred c
Q psy4673 169 E 169 (171)
Q Consensus 169 e 169 (171)
|
T Consensus 214 e 214 (282)
T TIGR01859 214 E 214 (282)
T ss_pred H
Confidence 4
No 222
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=54.42 E-value=29 Score=24.33 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 125 EIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 125 ~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
..+...+.++++.+. +.+.|+.|||..|.
T Consensus 64 ~~~~~~~~~~i~~~~-------------~~~~~vlVHC~~G~ 92 (139)
T cd00127 64 SKYFDEAVDFIDDAR-------------EKGGKVLVHCLAGV 92 (139)
T ss_pred HHHHHHHHHHHHHHH-------------hcCCcEEEECCCCC
Confidence 344455556666665 56788888888874
No 223
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=53.99 E-value=29 Score=27.81 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=37.8
Q ss_pred CCeEEEe-cCCC---C-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCcccc
Q psy4673 109 TGNSTMN-RYNS---S-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKEL 170 (171)
Q Consensus 109 ~~vvaIG-Dy~~---~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~el 170 (171)
.+-|||| +|.. + ...+..+...|+.-+++++ +++.|++|=|...++.|+
T Consensus 124 ~~~valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~r-------------k~~v~ivvtS~A~s~~el 177 (229)
T COG1603 124 EKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLAR-------------KYDVPIVVTSDAESPLEL 177 (229)
T ss_pred hcCceEEEehHHhhccchhHHHHHHHHHHHHHHHHH-------------hcCCCEEEeCCCCChhhh
Confidence 3468888 6643 2 2344568899999999999 999999999888888775
No 224
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.76 E-value=53 Score=32.09 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=33.8
Q ss_pred eEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673 25 LIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY 76 (171)
Q Consensus 25 ~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~ 76 (171)
|+|.|+|-...-. ...+++++++|++.|...+ +++- ......+..+.+++.
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~al-AiTDH~~l~g~~~f~~~~~~~ 55 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPAL-ALTDHGNMFGAVEFYKACKKA 55 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEE-EEecCCCchhHHHHHHHHHHc
Confidence 5789999865311 2478999999999999864 4442 234444555555654
No 225
>PRK09358 adenosine deaminase; Provisional
Probab=53.53 E-value=1.3e+02 Score=24.93 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=28.6
Q ss_pred HhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc---cCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 74 RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS---NTGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 74 ~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~---~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
++++-++...+|+-+... .+...+.+++++. .+.+++|| .......+ .+.|..-+++|++
T Consensus 130 ~~~gi~~~li~~~~r~~~---~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~----~~~~~~~~~~A~~ 193 (340)
T PRK09358 130 AEFGISVRLILCFMRHFG---EEAAARELEALAARYRDDGVVGFDLAGDELGFP----PSKFARAFDRARD 193 (340)
T ss_pred HhcCceEEEEEEecCCCC---HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCC----HHHHHHHHHHHHH
Confidence 344433445566554321 1233444444443 23477777 22111112 2346777899994
No 226
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=53.35 E-value=49 Score=32.70 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=34.4
Q ss_pred ceEeeccCCCCCCC--CCCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhc
Q psy4673 24 VLIDVGANLTNRKF--GRDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIY 76 (171)
Q Consensus 24 ~~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~ 76 (171)
.|+|.|+|-...-. ...+++++++|.+.|+.. ++++- +.....+..+.+++.
T Consensus 1 ~fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~a-vAiTDH~~l~g~~~f~~~a~~~ 56 (1135)
T PRK05673 1 RFVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPA-VALTDHGNLFGAVEFYKAAKGA 56 (1135)
T ss_pred CcccceecccCchhhhcCCHHHHHHHHHHcCCCE-EEEEcCCccHHHHHHHHHHHHc
Confidence 37899999875312 247899999999999985 44443 234444455555654
No 227
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=52.97 E-value=1.3e+02 Score=24.74 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=8.6
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
+-+|.|+||+-
T Consensus 2 PK~eLH~Hl~G 12 (305)
T cd00443 2 PKVELHAHLSG 12 (305)
T ss_pred CceeEEecCcC
Confidence 44799999973
No 228
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=52.77 E-value=1.3e+02 Score=24.59 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHh-cCCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC
Q psy4673 39 RDLESVVQRAKD-SGVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 39 ~d~~~vl~~a~~-~gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~ 109 (171)
+....+++..-+ .||.++++.|+. .++..++++.+.+ .++++-..+|+=.. -.++.++..+. +++.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~----~t~~ai~~a~~-a~~~ 98 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSV----NTAEAQELAKY-ATEL 98 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCC----CHHHHHHHHHH-HHHc
Confidence 346778888888 999998887764 4555666554332 23333333454211 11233333333 3332
Q ss_pred C--eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEec
Q psy4673 110 G--NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKD 163 (171)
Q Consensus 110 ~--vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~f 163 (171)
. .+.+- -||.... |.++++..-++|. ..++|+++...
T Consensus 99 Gad~v~v~~P~y~~~~----~~~l~~~f~~va~-------------a~~lPv~iYn~ 138 (293)
T PRK04147 99 GYDAISAVTPFYYPFS----FEEICDYYREIID-------------SADNPMIVYNI 138 (293)
T ss_pred CCCEEEEeCCcCCCCC----HHHHHHHHHHHHH-------------hCCCCEEEEeC
Confidence 2 22233 6665432 4566666677787 67788877653
No 229
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=52.69 E-value=35 Score=28.00 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=38.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673 30 ANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH 87 (171)
Q Consensus 30 ~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH 87 (171)
.|-|+.-+.+....-+-++.+.|+-.-..+=++-..|..+.++++++|+ ..+|+|
T Consensus 6 inADDfG~s~~vn~gI~~~~~~G~v~sts~M~n~p~~~~a~~~~~~~~~---~~vGlH 60 (283)
T TIGR03473 6 VTADDFGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPG---LGVGLH 60 (283)
T ss_pred EecccCCCCHHHHHHHHHHHHcCceeeeeeccCChhHHHHHHHHHhCCC---CCEEEE
Confidence 3456655666777777888888875433333445677888999998886 278999
No 230
>PLN02954 phosphoserine phosphatase
Probab=52.62 E-value=1e+02 Score=23.48 Aligned_cols=28 Identities=7% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhh
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKS 65 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~ 65 (171)
+.+...++++.+++.|+. +.+++.....
T Consensus 85 l~pg~~e~l~~l~~~g~~-~~IvS~~~~~ 112 (224)
T PLN02954 85 LSPGIPELVKKLRARGTD-VYLVSGGFRQ 112 (224)
T ss_pred CCccHHHHHHHHHHCCCE-EEEECCCcHH
Confidence 447889999999999986 4455555544
No 231
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=52.34 E-value=83 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=13.8
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCC
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQ 54 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~ 54 (171)
++|+|.+.+. ++..++.+.++|++
T Consensus 67 ~lDvHLm~~~------p~~~i~~~~~~Gad 90 (228)
T PTZ00170 67 FLDCHLMVSN------PEKWVDDFAKAGAS 90 (228)
T ss_pred CEEEEECCCC------HHHHHHHHHHcCCC
Confidence 4699988443 34444555555554
No 232
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=49.86 E-value=1.4e+02 Score=24.26 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHH--HhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-c-CCeE
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLA--RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS-N-TGNS 112 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~--~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~-~-~~vv 112 (171)
..+...++++..++.|+.-.|+.+.........++.. ..+.. .+..++-.+....+..++.+..+.+.+. . ..++
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQ-GLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccC-ceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 3467888999999999875555455555555555432 12222 1222233332222333444444444333 2 3588
Q ss_pred EEecC
Q psy4673 113 TMNRY 117 (171)
Q Consensus 113 aIGDy 117 (171)
.|||-
T Consensus 224 ~IGDs 228 (286)
T PLN02779 224 VVEDS 228 (286)
T ss_pred EEeCC
Confidence 89964
No 233
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=49.25 E-value=89 Score=23.87 Aligned_cols=75 Identities=15% Similarity=0.294 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCC-Chhh--HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc-CCeEEEe
Q psy4673 41 LESVVQRAKDSGVQKIIAIGS-SLKS--SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN-TGNSTMN 115 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~-~~~~--~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~-~~vvaIG 115 (171)
+...+.++-+.|++.+++-|. ..+. .+-+++|.++||+.-..++=--..+...|++..-+.+..++.. ..++.|.
T Consensus 31 L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs 109 (177)
T PF06908_consen 31 LKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSILEQADFVVVVS 109 (177)
T ss_dssp HHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHHHHH-SEEEESS
T ss_pred HHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHHHHhCCEEEEcc
Confidence 455556677789987766432 3333 4566778889997312222222345567888888888887765 4455666
No 234
>KOG0564|consensus
Probab=48.71 E-value=39 Score=30.36 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=37.8
Q ss_pred EeeccCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCh-----------hhHHHHHHH----HHhcCCcEEEEeee
Q psy4673 26 IDVGANLTNRKF-GRDLESVVQRAKDSGVQKIIAIGSSL-----------KSSKEALRL----ARIYPGMVYSTAGI 86 (171)
Q Consensus 26 iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~~i~v~~~~-----------~~~~~~~~l----~~~~~~~v~~~~Gi 86 (171)
++|=.||..... .+..+.-|++|+..|++.+++.-.|| ..|+-+++| .++|.+ |+++|+
T Consensus 78 v~t~mHlTCtn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD--yF~IgV 152 (590)
T KOG0564|consen 78 LETCMHLTCTNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD--YFCIGV 152 (590)
T ss_pred ccceeeeeccCccHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCC--eEEEEe
Confidence 455567765322 24677888999999999988877763 124434443 567876 445554
No 235
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=48.63 E-value=1.2e+02 Score=23.06 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=4.1
Q ss_pred ceEeeccC
Q psy4673 24 VLIDVGAN 31 (171)
Q Consensus 24 ~~iDtH~H 31 (171)
.++|+|++
T Consensus 55 i~~d~k~~ 62 (206)
T TIGR03128 55 VLADLKTM 62 (206)
T ss_pred EEEEEeec
Confidence 34555544
No 236
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.49 E-value=52 Score=26.17 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCC---hhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSS---LKSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~---~~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
+..+.+..++.+.+.|++.++++... .++..+.++.++++. +-+.+-++|..
T Consensus 86 ~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~p~T 140 (244)
T PRK13125 86 YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTSPKF 140 (244)
T ss_pred hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEECCCC
Confidence 44688999999999999988887543 356677777788775 45678889964
No 237
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=48.25 E-value=1.2e+02 Score=22.84 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHH
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEAL 70 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~ 70 (171)
..+...++++.+++.|+.-.|+.+.........+
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l 119 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL 119 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 3468889999999999864444343333443333
No 238
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=48.09 E-value=1.3e+02 Score=23.49 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
.+...++++..++.|+.-.|+.+...+.....++
T Consensus 101 ~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~ 134 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAP 134 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 4678999999999998654543444444444444
No 239
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=48.06 E-value=1.3e+02 Score=24.02 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcCCCE--EEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC-CCCHHHHHHHHHH
Q psy4673 39 RDLESVVQRAKDSGVQK--IIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK-SWDEDYIDQLRDL 105 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~--~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-~~~~~~~~~l~~~ 105 (171)
....++++..++.|++. +++++|..+.++..+.... +..-+.+.|-+.. .+.++.++.++++
T Consensus 96 ~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD-----~VllMsVnPGfgGQ~Fi~~~l~Ki~~l 160 (220)
T COG0036 96 EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVD-----LVLLMSVNPGFGGQKFIPEVLEKIREL 160 (220)
T ss_pred cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCC-----EEEEEeECCCCcccccCHHHHHHHHHH
Confidence 35677777788877764 4556666666665554322 2345788887765 4666666665543
No 240
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=47.93 E-value=1.6e+02 Score=24.36 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=59.7
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCC---CCCCCCH-
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPH---EAKSWDE- 96 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~---~~~~~~~- 96 (171)
..=.|||+. +.+ .+.+|-+.|+..+..=+... +...++.+++..+.-.+-.-+|-=.- .....+.
T Consensus 79 PV~lHLDH~----~~~-~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~ 153 (293)
T PRK07315 79 PVAIHLDHG----HYE-DALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGEL 153 (293)
T ss_pred cEEEECCCC----CHH-HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCC
Confidence 445799984 333 66788889998655444432 22344455566654223334443321 1000000
Q ss_pred HHHHHHHHHhcc-CCeEEEe--cC---CCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEecCCCccc
Q psy4673 97 DYIDQLRDLVSN-TGNSTMN--RY---NSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHKDSSMMKE 169 (171)
Q Consensus 97 ~~~~~l~~~l~~-~~vvaIG--Dy---~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~fsg~~~e 169 (171)
...++..+..+. .-++|+| -. |... .+..- |++-=++.+ .. +.|+++|+-||..+|
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~-~k~l~---~e~L~~i~~-------------~~~~iPlVlhGGSGi~~e 216 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPEN-WEGLD---LDHLEKLTE-------------AVPGFPIVLHGGSGIPDD 216 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCC-CCcCC---HHHHHHHHH-------------hccCCCEEEECCCCCCHH
Confidence 123333444322 3455544 33 2221 12222 222234444 55 499999999998765
No 241
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.89 E-value=1.5e+02 Score=24.16 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcC-CCEEEEeCCC-------hhhHHHHHHHHHh-cCCc--EEEEeeeCCCCCCCCCHHHHHHHHHHhcc
Q psy4673 40 DLESVVQRAKDSG-VQKIIAIGSS-------LKSSKEALRLARI-YPGM--VYSTAGIHPHEAKSWDEDYIDQLRDLVSN 108 (171)
Q Consensus 40 d~~~vl~~a~~~g-v~~~i~v~~~-------~~~~~~~~~l~~~-~~~~--v~~~~GiHP~~~~~~~~~~~~~l~~~l~~ 108 (171)
.....++...+.| |.++++.|+. .++..++++.+.+ ..++ |+..+|-.. .++.++.. +.+++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~------t~~~i~la-~~a~~ 94 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN------LKEAVELG-KYATE 94 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC------HHHHHHHH-HHHHH
Confidence 4677788888899 9998877663 5666666664332 2233 343444221 12334333 33444
Q ss_pred CCe--EEEe-cCCCCCCcHHHHHHHHHHHHHHhh
Q psy4673 109 TGN--STMN-RYNSSQWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 109 ~~v--vaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~ 139 (171)
-.+ +.+. -||+... |.+++...-++|.
T Consensus 95 ~Gad~v~v~~P~y~~~~----~~~i~~yf~~v~~ 124 (290)
T TIGR00683 95 LGYDCLSAVTPFYYKFS----FPEIKHYYDTIIA 124 (290)
T ss_pred hCCCEEEEeCCcCCCCC----HHHHHHHHHHHHh
Confidence 333 3334 5555432 4556666667765
No 242
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=47.81 E-value=1.5e+02 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
.+...++++..++.|+.-.|+.+.........++
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~ 144 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAVASTRPRRYLERAIE 144 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHH
Confidence 4688999999999998655444444444444443
No 243
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=47.76 E-value=1.2e+02 Score=24.08 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
.+.+++.+.++|+.+++.+-..+++..+.++
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 3444555555555544444444443333333
No 244
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=47.64 E-value=74 Score=25.33 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEA 91 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~ 91 (171)
++.+.+++.+++.|++.++.++... ..+++..+.+...+.+| .+++-|-..
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T-~~~~i~~i~~~~~~~vy-~~s~~g~tG 166 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIAELASGFIY-YVSRTGVTG 166 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhhCCCCEE-EEeCCCCCC
Confidence 3667899999999998655444321 23344444453455554 577777654
No 245
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=47.59 E-value=1.2e+02 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCChhhHHHHHHH
Q psy4673 42 ESVVQRAKDSGVQKIIAIGSSLKSSKEALRL 72 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l 72 (171)
+..++++.++|+..++++-..+++..+.++.
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 4555555555555555544444444433333
No 246
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=47.49 E-value=85 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKE 68 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~ 68 (171)
.++..+++++.++.|+.-.++.|.+......
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~ 159 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASA 159 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHH
T ss_pred hhhhhhhhhhhhccCcceeeeeccccccccc
Confidence 3688999999999999644444444444433
No 247
>PRK00110 hypothetical protein; Validated
Probab=47.22 E-value=1.5e+02 Score=23.92 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhcCCCEE------EEeCCChhhHHHHHHHHHhcC-CcEEEEeeeCCCCCCCCCHHHHHHHHHHhc
Q psy4673 40 DLESVVQRAKDSGVQKI------IAIGSSLKSSKEALRLARIYP-GMVYSTAGIHPHEAKSWDEDYIDQLRDLVS 107 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~------i~v~~~~~~~~~~~~l~~~~~-~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~ 107 (171)
+.++++..|-++|.+-+ +.+-|+|.++..+.+..+... ...-.-+.+-|......+++..+.+.+++.
T Consensus 146 ~~d~~~e~aieaGaeDv~~e~~~~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~v~l~~e~~~~~~~li~ 220 (245)
T PRK00110 146 DEDELMEAALEAGAEDVETDDESFEVITAPEDFEAVRDALEAAGLEAESAEVTMIPQNTVELDEETAEKLLKLID 220 (245)
T ss_pred CHHHHHHHHHhCCCCEeeccCCeEEEEECHHHHHHHHHHHHHcCCCeeeeEEEEecCCCcccCHHHHHHHHHHHH
Confidence 46788888888888554 678889999988877555432 123466888898665666666666666653
No 248
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=47.13 E-value=1.8e+02 Score=24.84 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=13.5
Q ss_pred cCceEEEecCCCccc
Q psy4673 155 NRHLWVHKDSSMMKE 169 (171)
Q Consensus 155 ~~p~iiH~fsg~~~e 169 (171)
+.|+++|+-||.++|
T Consensus 249 ~vPLVLHGgSGipde 263 (350)
T PRK09197 249 PFDFVFHGGSGSTLE 263 (350)
T ss_pred CCCEEEeCCCCCCHH
Confidence 689999999999876
No 249
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.84 E-value=1.8e+02 Score=24.76 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=13.3
Q ss_pred cCceEEEecCCCccc
Q psy4673 155 NRHLWVHKDSSMMKE 169 (171)
Q Consensus 155 ~~p~iiH~fsg~~~e 169 (171)
+.|+++|+-||.++|
T Consensus 245 ~ipLVLHGgSG~~~e 259 (345)
T cd00946 245 PLYFVFHGGSGSTKE 259 (345)
T ss_pred CCCEEEeCCCCCCHH
Confidence 689999999998876
No 250
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.81 E-value=1.1e+02 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChh
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLK 64 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~ 64 (171)
..+...++++.+.|.+.+-....+|.
T Consensus 11 g~~~~a~~~~~~~G~~~~qif~~~P~ 36 (274)
T TIGR00587 11 GGLQAAYNRAAEIGATAFMFFLKSPR 36 (274)
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCcc
Confidence 57788899999999987666555554
No 251
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=46.70 E-value=1.4e+02 Score=23.34 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=36.5
Q ss_pred cceEeeccCCCCC----CCCCCHHHHHHHHHhc------CCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeee
Q psy4673 23 YVLIDVGANLTNR----KFGRDLESVVQRAKDS------GVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 23 ~~~iDtH~HL~~~----~~~~d~~~vl~~a~~~------gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
+.+.|.|...... .|.+...+.+++..+. +.+. |+++.|. +.+...++..+..+..+|+..|=
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~-viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDI-VLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCE-EEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 4578998775331 2444444444444443 6664 5555553 23334444444444336889999
Q ss_pred CCCC
Q psy4673 87 HPHE 90 (171)
Q Consensus 87 HP~~ 90 (171)
|=.+
T Consensus 81 HD~~ 84 (232)
T cd07393 81 HDYW 84 (232)
T ss_pred cccc
Confidence 9764
No 252
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=45.89 E-value=1.5e+02 Score=23.50 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRL 72 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l 72 (171)
.+...++++..++.|+.-.|+.+.........++.
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~ 137 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPL 137 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH
Confidence 46889999999999986544444444444555543
No 253
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=45.77 E-value=1.8e+02 Score=24.32 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcCCCE-EEEeCCCh---------------hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC-HHHHHH
Q psy4673 39 RDLESVVQRAKDSGVQK-IIAIGSSL---------------KSSKEALRLARIYPGMVYSTAGIHPHEAKSWD-EDYIDQ 101 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~-~i~v~~~~---------------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~-~~~~~~ 101 (171)
+++.++++.+.+.|... +-.+-.|+ +.+.++.+.+++.. |-..+||||-....++ +++++.
T Consensus 15 e~R~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~--V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 15 EDRLDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANG--VDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT---EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcC--CEEEEEECcccccccCcHHHHHH
Confidence 47888999999988874 55666663 22344444455543 7789999997654444 344544
Q ss_pred HHHHh---ccCCeEEEe
Q psy4673 102 LRDLV---SNTGNSTMN 115 (171)
Q Consensus 102 l~~~l---~~~~vvaIG 115 (171)
|.+-+ .+-.|..+|
T Consensus 93 L~~K~~ql~~lGvr~Fa 109 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFA 109 (306)
T ss_dssp HHHHHHHHHCTT--EEE
T ss_pred HHHHHHHHHhcCCCEEE
Confidence 43322 234555555
No 254
>KOG2310|consensus
Probab=45.50 E-value=82 Score=28.72 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=37.5
Q ss_pred Cccc-eEeeccCCCCCCCC--------CCHHHHHHHHHhcCCCEEEEeCCCh--------hhHHHHHHHHHhc
Q psy4673 21 DNYV-LIDVGANLTNRKFG--------RDLESVVQRAKDSGVQKIIAIGSSL--------KSSKEALRLARIY 76 (171)
Q Consensus 21 ~~~~-~iDtH~HL~~~~~~--------~d~~~vl~~a~~~gv~~~i~v~~~~--------~~~~~~~~l~~~~ 76 (171)
.++. +|=|-+||.+...+ ..++++++-|.+..|+ ||..|.++ +..-+++++.++|
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VD-miLlGGDLFHeNkPSr~~L~~~i~lLRry 83 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVD-MILLGGDLFHENKPSRKTLHRCLELLRRY 83 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCc-EEEecCcccccCCccHHHHHHHHHHHHHH
Confidence 3444 68888888864322 2589999999999998 56667763 4456667766554
No 255
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=45.49 E-value=1.4e+02 Score=22.95 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=29.5
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC--hhhHHHHHHHHHhcC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS--LKSSKEALRLARIYP 77 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~--~~~~~~~~~l~~~~~ 77 (171)
.++|.|.|.-. +.....++.+.+.|.+. +++-.. .+...++++.++++.
T Consensus 56 i~~D~k~~di~----~~~~~~~~~~~~~gad~-vtvh~e~g~~~l~~~i~~~~~~g 106 (215)
T PRK13813 56 VIADLKVADIP----NTNRLICEAVFEAGAWG-IIVHGFTGRDSLKAVVEAAAESG 106 (215)
T ss_pred EEEEeeccccH----HHHHHHHHHHHhCCCCE-EEEcCcCCHHHHHHHHHHHHhcC
Confidence 46799998532 12334446677788874 444443 344667777777765
No 256
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=45.43 E-value=1.7e+02 Score=23.94 Aligned_cols=91 Identities=10% Similarity=-0.047 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCh----------hh-----HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHh
Q psy4673 42 ESVVQRAKDSGVQKIIAIGSSL----------KS-----SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLV 106 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~~~----------~~-----~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l 106 (171)
...+.++...||.. +-+-.+| ++ .+.+.+..++++-++...+++.+... ++..++..+++
T Consensus 76 ~~~~~e~~~~Gvt~-~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~----~~~~~~~~~~~ 150 (325)
T cd01320 76 YEYLEDAAADGVVY-AEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLS----PESAQETLELA 150 (325)
T ss_pred HHHHHHHHHcCCEE-EEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCC----HHHHHHHHHHH
Confidence 34456678889964 4333222 21 11223334556544555566555321 22333333333
Q ss_pred -cc--CCeEEEecCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 107 -SN--TGNSTMNRYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 107 -~~--~~vvaIGDy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
+. ..++++| ........ -.+.|...+++|++
T Consensus 151 ~~~~~~~vvg~~-l~~~~~~~--~~~~~~~~~~~A~~ 184 (325)
T cd01320 151 LKYRDKGVVGFD-LAGDEVGF--PPEKFVRAFQRARE 184 (325)
T ss_pred HhccCCCEEEee-cCCCCCCC--CHHHHHHHHHHHHH
Confidence 22 2355555 22111100 12346777899994
No 257
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.09 E-value=1.3e+02 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHHHHhcCCCEEEEeCCChhhH
Q psy4673 45 VQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 45 l~~a~~~gv~~~i~v~~~~~~~ 66 (171)
+++|.++|-++++.++.+++-.
T Consensus 81 ~~~a~~aGA~FivsP~~~~~v~ 102 (213)
T PRK06552 81 ARLAILAGAQFIVSPSFNRETA 102 (213)
T ss_pred HHHHHHcCCCEEECCCCCHHHH
Confidence 3566667777777777665543
No 258
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=44.96 E-value=23 Score=28.42 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 33 TNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 33 ~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
|+..+......-+-++.+.|+-.-..+=++-..|..+.++++.+|.. .+|+|=..
T Consensus 8 DDfG~s~~vn~gI~~~~~~G~vtstslM~n~p~~~~a~~~~k~~~~~---~vGlHl~L 62 (261)
T PF04794_consen 8 DDFGLSPGVNRGIIEAFENGIVTSTSLMVNMPAFEEAAALAKNNPGL---DVGLHLNL 62 (261)
T ss_dssp EEETSSHHHHHHHHHHHHCCT-SEEEEETTSTTHHHHHHHHHH-TTT---EEEEEE-S
T ss_pred CCCCCCHHHHHHHHHHHHcCCceEeeeccCChhHHHHHHHHHhCCCC---CEEEEeEc
Confidence 44344455666677788888754444444556778889999999863 69999443
No 259
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=44.51 E-value=1.4e+02 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSS 62 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~ 62 (171)
..++..+++++.++.|+.- .+++..
T Consensus 95 ~~~g~~~~L~~L~~~g~~~-~i~Tn~ 119 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRL-GIITDG 119 (221)
T ss_pred CCCCHHHHHHHHHHCCCEE-EEEeCC
Confidence 3468899999999999864 444444
No 260
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=44.44 E-value=1.8e+02 Score=23.92 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=61.7
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCh------hhHHHHHHHHHhcCCcEEEEeeeCCCCCC------CC
Q psy4673 27 DVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL------KSSKEALRLARIYPGMVYSTAGIHPHEAK------SW 94 (171)
Q Consensus 27 DtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~------~~~~~~~~l~~~~~~~v~~~~GiHP~~~~------~~ 94 (171)
..=.|||+. .+. +.+.+|-+.|+..+..=+.+. +...++.++++.+.- -.-+=|.|=-... ..
T Consensus 76 pv~lHlDH~---~~~-e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv-~veaE~ghlG~~d~~~~~~g~ 150 (281)
T PRK06806 76 PVAVHFDHG---MTF-EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGA-TVEAEIGRVGGSEDGSEDIEM 150 (281)
T ss_pred CEEEECCCC---CCH-HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeECCccCCcccccc
Confidence 455899985 344 467778888997654433332 223444556666642 2223333411010 00
Q ss_pred CHHHHHHHHHHhcc--CCeEEE--ecCCCC-CCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCccc
Q psy4673 95 DEDYIDQLRDLVSN--TGNSTM--NRYNSS-QWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKE 169 (171)
Q Consensus 95 ~~~~~~~l~~~l~~--~~vvaI--GDy~~~-~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~e 169 (171)
+-...++..+..+. .-.+|+ |-.|.. +.....+.+.++ ++.+ ..+.|+++|+-||-.+|
T Consensus 151 s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~---~i~~-------------~~~iPlV~hG~SGI~~e 214 (281)
T PRK06806 151 LLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQ---EIND-------------VVHIPLVLHGGSGISPE 214 (281)
T ss_pred eeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHH---HHHH-------------hcCCCEEEECCCCCCHH
Confidence 00123444444432 346666 722211 122234544443 4445 56799999999996554
No 261
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.06 E-value=1.7e+02 Score=23.62 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCEEEEeCCChhh---HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC--CeEEEecC
Q psy4673 43 SVVQRAKDSGVQKIIAIGSSLKS---SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT--GNSTMNRY 117 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~~~~~---~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~--~vvaIGDy 117 (171)
+.+..+.+.|++. |-++....+ ....++.+++..- . +-+.+..+...+++.+.++-+.+.+- ..+.|.|-
T Consensus 86 ~~l~~a~~~gv~~-iri~~~~~~~~~~~~~i~~ak~~G~--~--v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT 160 (266)
T cd07944 86 DLLEPASGSVVDM-IRVAFHKHEFDEALPLIKAIKEKGY--E--VFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS 160 (266)
T ss_pred HHHHHHhcCCcCE-EEEecccccHHHHHHHHHHHHHCCC--e--EEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3456677888864 555554444 4445555555532 2 22334444445555555544444432 33344476
Q ss_pred CC
Q psy4673 118 NS 119 (171)
Q Consensus 118 ~~ 119 (171)
.-
T Consensus 161 ~G 162 (266)
T cd07944 161 FG 162 (266)
T ss_pred CC
Confidence 54
No 262
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=43.91 E-value=1.8e+02 Score=23.81 Aligned_cols=102 Identities=14% Similarity=0.258 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-------hhhHHHHHHH-HHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC-
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-------LKSSKEALRL-ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG- 110 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-------~~~~~~~~~l-~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~- 110 (171)
....+++...+.||.++++.|+. .++..++++. .+...+++-..+|+=... .++.++..+. +++-.
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~----t~~ai~~a~~-A~~~Ga 96 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALN----HDETLELTKF-AEEAGA 96 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcch----HHHHHHHHHH-HHHcCC
Confidence 46778888889999998887774 3444555553 233333332334443221 1234444333 33322
Q ss_pred -eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEec
Q psy4673 111 -NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHKD 163 (171)
Q Consensus 111 -vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~f 163 (171)
.+.+. -||... + |.+++..+-.+|. .. ++|+++-.+
T Consensus 97 d~v~v~pP~y~~~-~---~~~l~~~f~~ia~-------------a~~~lpv~iYn~ 135 (294)
T TIGR02313 97 DAAMVIVPYYNKP-N---QEALYDHFAEVAD-------------AVPDFPIIIYNI 135 (294)
T ss_pred CEEEEcCccCCCC-C---HHHHHHHHHHHHH-------------hccCCCEEEEeC
Confidence 33444 666543 2 4556666667777 66 688777654
No 263
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=43.13 E-value=1.5e+02 Score=22.53 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHH----hcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-c--C
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR----IYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS-N--T 109 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~----~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~-~--~ 109 (171)
+.+...++++.+++.|+.-.|+.+...+.....++... .+-..++++-.+. ..+..++.+..+.+.+. . .
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~---~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVA---AGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCC---CCCCCHHHHHHHHHHcCCCChh
Confidence 45688999999999998755555555555555554322 2222233322222 22333444444433333 2 3
Q ss_pred CeEEEecCC
Q psy4673 110 GNSTMNRYN 118 (171)
Q Consensus 110 ~vvaIGDy~ 118 (171)
+++.|||..
T Consensus 165 ~~~~igD~~ 173 (220)
T TIGR03351 165 SVAVAGDTP 173 (220)
T ss_pred HeEEeCCCH
Confidence 689999753
No 264
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=42.74 E-value=71 Score=24.28 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=28.7
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALR 71 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~ 71 (171)
++|.|.+.. .+.+...++++..++.|+.-.|+.+. .....+..++
T Consensus 36 ~~~~~~~~~--~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 36 IIDKSGTEV--TLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred EEeCCCCEE--EEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 566665533 34578999999999999875555445 4444444444
No 265
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.17 E-value=1.3e+02 Score=21.24 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHH--HhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--cCCeEE
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLA--RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--NTGNST 113 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~--~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~~~vva 113 (171)
.++..+++++.++.|+.-+++.+.+.+.....++-. ..+...++. .+-.+. .+..++.+..+.+.+. -..++.
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~-~~~~~~--~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIIS-SDDVGS--RKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEE-GGGSSS--STTSHHHHHHHHHHHTSSGGGEEE
T ss_pred hhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccc-cchhhh--hhhHHHHHHHHHHHcCCCcceEEE
Confidence 367889999999899864444444444444443321 122333432 222222 2333445555444332 246899
Q ss_pred EecC
Q psy4673 114 MNRY 117 (171)
Q Consensus 114 IGDy 117 (171)
|||.
T Consensus 156 vgD~ 159 (176)
T PF13419_consen 156 VGDS 159 (176)
T ss_dssp EESS
T ss_pred EeCC
Confidence 9974
No 266
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=41.12 E-value=17 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=21.2
Q ss_pred ceEeeccC--CCCCCC----CCCHHHHHHHHHhcCCCEEEE
Q psy4673 24 VLIDVGAN--LTNRKF----GRDLESVVQRAKDSGVQKIIA 58 (171)
Q Consensus 24 ~~iDtH~H--L~~~~~----~~d~~~vl~~a~~~gv~~~i~ 58 (171)
.|||+|+| +..... ..........+...|+..++.
T Consensus 10 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~ 50 (304)
T PF13147_consen 10 GLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVD 50 (304)
T ss_dssp -EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEE
T ss_pred ceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEec
Confidence 48999999 433211 123334456667789877665
No 267
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=40.80 E-value=1.9e+02 Score=23.15 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhc--CCCEEEEeCC-----ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH-hc----
Q psy4673 40 DLESVVQRAKDS--GVQKIIAIGS-----SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL-VS---- 107 (171)
Q Consensus 40 d~~~vl~~a~~~--gv~~~i~v~~-----~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~-l~---- 107 (171)
.++.+++.+... ..+.+|..|- +.+++....+..++.+.-+|...|=|=... ...+.+.+. +.
T Consensus 41 ~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~~~-----~~~~~~~~~~~~~~~~ 115 (275)
T PRK11148 41 SYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGNHDFQP-----AMYSALQDAGISPAKH 115 (275)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCCCCChH-----HHHHHHhhcCCCccce
Confidence 356667766554 3555555442 134566666665655434788999885421 112222211 11
Q ss_pred ---cCCeEEEe-cCCC---C-CCcHHHHHHHHHHHHHHhhH
Q psy4673 108 ---NTGNSTMN-RYNS---S-QWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 108 ---~~~vvaIG-Dy~~---~-~~~~~~Q~~~F~~ql~lA~~ 140 (171)
.+...-|+ |-.. . ..-.+.|.++++++|+-+.+
T Consensus 116 ~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~ 156 (275)
T PRK11148 116 VLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPE 156 (275)
T ss_pred EEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCC
Confidence 12223344 4321 1 11236799999999987764
No 268
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=39.91 E-value=26 Score=28.30 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=12.4
Q ss_pred hhcCceEEEecCCCc
Q psy4673 153 HLNRHLWVHKDSSMM 167 (171)
Q Consensus 153 ~~~~p~iiH~fsg~~ 167 (171)
++++|++||++.+..
T Consensus 125 ~~~~Pv~iH~r~a~~ 139 (258)
T PRK11449 125 RYDLPVILHSRRTHD 139 (258)
T ss_pred HhCCCEEEEecCccH
Confidence 569999999998654
No 269
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=39.78 E-value=1.6e+02 Score=22.08 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHH
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSK 67 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~ 67 (171)
..++..++++++++.|+.-+|+.+.......
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~ 106 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPRAR 106 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 3478899999999999865444443433333
No 270
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.77 E-value=78 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673 45 VQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 45 l~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
++++...|+.++++-+...++.+.+.+++++||+.+..++-.
T Consensus 91 v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~ 132 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDA 132 (234)
T ss_pred HHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEe
Confidence 455666788886554445566677777888887666666554
No 271
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=38.82 E-value=1.4e+02 Score=24.76 Aligned_cols=88 Identities=7% Similarity=0.023 Sum_probs=52.1
Q ss_pred ChhhHHHHHHHHHhcCCc-------EEEEeeeCC----CCCCCCCHHHHHHHHHHhccCCeEEEe---cCCCCC--C---
Q psy4673 62 SLKSSKEALRLARIYPGM-------VYSTAGIHP----HEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNSSQ--W--- 122 (171)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~-------v~~~~GiHP----~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~~~--~--- 122 (171)
+..+..++++...+++-. ++| ++-|| |.........++.+.+++++..+ -+- +|+-+- .
T Consensus 46 Nl~~l~~~l~~~~~~~I~~~R~sS~l~P-~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~i-rls~Hp~y~inL~S~~~e 123 (303)
T PRK02308 46 NLENLLRILKYNIAHGIGLFRLSSSLIP-LATHPELEGWDYIEPFKEELREIGEFIKEHNI-RLSFHPDQFVVLNSPKPE 123 (303)
T ss_pred HHHHHHHHHHHHHHCCCCEEEcccCcCC-CCCChhhcccCCCCCCHHHHHHHHHHHHHcCC-CeeccChhhhcCCCCCHH
Confidence 445666666666555421 222 56677 33333445677888887765544 232 665431 1
Q ss_pred cHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCc----eEEEecC
Q psy4673 123 ITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRH----LWVHKDS 164 (171)
Q Consensus 123 ~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p----~iiH~fs 164 (171)
-.+.-.+.+..++++|. .++.+ ++||.-.
T Consensus 124 v~e~Si~~L~~~~~~~~-------------~lG~~~~~~vViHpG~ 156 (303)
T PRK02308 124 VVENSIKDLEYHAKLLD-------------LMGIDDSSKINIHVGG 156 (303)
T ss_pred HHHHHHHHHHHHHHHHH-------------HCCCCCCCEEEECCCc
Confidence 12334678999999998 77766 7788655
No 272
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=38.00 E-value=1.2e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEE-Eec
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNST-MNR 116 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vva-IGD 116 (171)
.++..+.++++++.|++.+++.|-++.... .++++-. .-....+.-| ++-++.++++-++.++|| +||
T Consensus 443 R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~---aIA~elG-I~~v~A~~~P-------edK~~iV~~lQ~~G~~VaMtGD 511 (673)
T PRK14010 443 KDGLVERFRELREMGIETVMCTGDNELTAA---TIAKEAG-VDRFVAECKP-------EDKINVIREEQAKGHIVAMTGD 511 (673)
T ss_pred cHHHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcC-CceEEcCCCH-------HHHHHHHHHHHhCCCEEEEECC
Confidence 467888999999999986555555555443 3445443 1111122222 333444454434566665 884
No 273
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.77 E-value=2.2e+02 Score=23.08 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhc-CCCEEEEeCCC-------hhhHHHHHHHHHh-cCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC
Q psy4673 40 DLESVVQRAKDS-GVQKIIAIGSS-------LKSSKEALRLARI-YPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG 110 (171)
Q Consensus 40 d~~~vl~~a~~~-gv~~~i~v~~~-------~~~~~~~~~l~~~-~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~ 110 (171)
....+++.+.+. |+.+++..|+. .++..++++.+.+ ..+++-..+|+=.... ++.++. .+.+++-.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~----~~ai~~-a~~a~~~G 96 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNL----KESQEL-AKHAEELG 96 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCH----HHHHHH-HHHHHHcC
Confidence 467788888888 99998887763 4556666654333 2333333455532211 223333 33333332
Q ss_pred --eEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhh-cCceEEEec
Q psy4673 111 --NSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHL-NRHLWVHKD 163 (171)
Q Consensus 111 --vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~-~~p~iiH~f 163 (171)
.+.+- -||+.. + |.+++...-++|. .. ++|+++-..
T Consensus 97 ad~v~~~~P~y~~~-~---~~~i~~~~~~v~~-------------a~~~lpi~iYn~ 136 (288)
T cd00954 97 YDAISAITPFYYKF-S---FEEIKDYYREIIA-------------AAASLPMIIYHI 136 (288)
T ss_pred CCEEEEeCCCCCCC-C---HHHHHHHHHHHHH-------------hcCCCCEEEEeC
Confidence 33344 555532 2 4556666667777 67 788887653
No 274
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=37.54 E-value=2.1e+02 Score=22.69 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCCE--EEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC-CCHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQK--IIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS-WDEDYIDQLR 103 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~--~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~ 103 (171)
++...++..++.|++. .+.++|..+.....+.. - + ...-+.+.|-+..+ +.+..++.++
T Consensus 98 ~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~---v-D-~VlvMtV~PGf~GQ~fi~~~l~KI~ 159 (223)
T PRK08745 98 HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE---L-D-LVLVMSVNPGFGGQAFIPSALDKLR 159 (223)
T ss_pred cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh---c-C-EEEEEEECCCCCCccccHHHHHHHH
Confidence 3556667777777654 33445555555444332 2 2 23356777766543 4444444443
No 275
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.52 E-value=1.3e+02 Score=24.27 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEE
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYS 82 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~ 82 (171)
++..++++.+++.|+..++.++.+. .-+++..+++.-++++|.
T Consensus 127 ee~~~~~~~~~~~gl~~i~lv~P~T-~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 127 EESGDLVEAAKKHGVKPIFLVAPNA-DDERLKQIAEKSQGFVYL 169 (256)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCC-CHHHHHHHHHhCCCCEEE
Confidence 4567888999999998654443322 123444455555555664
No 276
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=37.49 E-value=1.5e+02 Score=20.99 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHH-HHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-cCCeEEEec
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRL-ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS-NTGNSTMNR 116 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l-~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~-~~~vvaIGD 116 (171)
+...++++..++.|+.-.|+.+.+.......++. ...+...++ |..... .+..++.+..+.+.+. .++++.|||
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l~~~f~~i~---~~~~~~-~Kp~~~~~~~~~~~~~~~~~~l~iGD 142 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHLGDYFDLIL---GSDEFG-AKPEPEIFLAALESLGLPPEVLHVGD 142 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHHHhcCcEEE---ecCCCC-CCcCHHHHHHHHHHcCCCCCEEEEeC
Confidence 5688999999999986555545555555444443 333333232 222222 2333344444443332 247899997
Q ss_pred C
Q psy4673 117 Y 117 (171)
Q Consensus 117 y 117 (171)
-
T Consensus 143 s 143 (154)
T TIGR01549 143 N 143 (154)
T ss_pred C
Confidence 4
No 277
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=37.49 E-value=1.9e+02 Score=23.85 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHhcCCCEEEE-eCCC---------------hhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCC--CHHHHH
Q psy4673 39 RDLESVVQRAKDSGVQKIIA-IGSS---------------LKSSKEALRLARIYPGMVYSTAGIHPHEAKSW--DEDYID 100 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~-v~~~---------------~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~--~~~~~~ 100 (171)
+.....+.-|.+.|++.+++ -|-. ..+.+++++.+++- + |-.-+=.|=...... .+..++
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K-g-Vgi~lw~~~~~~~~~~~~~~~~~ 109 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK-G-VGIWLWYHSETGGNVANLEKQLD 109 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT-T--EEEEEEECCHTTBHHHHHCCHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc-C-CCEEEEEeCCcchhhHhHHHHHH
Confidence 35667888899999998666 2221 23466777777654 3 211122221110000 011234
Q ss_pred HHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEe
Q psy4673 101 QLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHK 162 (171)
Q Consensus 101 ~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~ 162 (171)
....++++-.|.||- ||.-... ..-...+++-++-|. ++++-|.+|.
T Consensus 110 ~~f~~~~~~Gv~GvKidF~~~d~--Q~~v~~y~~i~~~AA-------------~~~LmvnfHg 157 (273)
T PF10566_consen 110 EAFKLYAKWGVKGVKIDFMDRDD--QEMVNWYEDILEDAA-------------EYKLMVNFHG 157 (273)
T ss_dssp HHHHHHHHCTEEEEEEE--SSTS--HHHHHHHHHHHHHHH-------------HTT-EEEETT
T ss_pred HHHHHHHHcCCCEEeeCcCCCCC--HHHHHHHHHHHHHHH-------------HcCcEEEecC
Confidence 444445566788888 8876422 233568999999999 8888888886
No 278
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.46 E-value=2.3e+02 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEE
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYS 82 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~ 82 (171)
++.+++.+.+.+.|+..+..++-+ ..-+++..+++..+++||+
T Consensus 127 ee~~~~~~~~~~~gl~~I~lv~p~-t~~~Ri~~i~~~a~gFiY~ 169 (259)
T PF00290_consen 127 EESEELREAAKKHGLDLIPLVAPT-TPEERIKKIAKQASGFIYL 169 (259)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEETT-S-HHHHHHHHHH-SSEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHhCCcEEEe
Confidence 567788888999999754433321 1223444455555676665
No 279
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.39 E-value=2.6e+02 Score=23.54 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCc--------EEEEeeeCCCCCCCCCHHHHHHHHHHhc--
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGM--------VYSTAGIHPHEAKSWDEDYIDQLRDLVS-- 107 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~--------v~~~~GiHP~~~~~~~~~~~~~l~~~l~-- 107 (171)
+|+.++++.|++.||+ |++-.+ |......+ +.+|.. +....|+.|....-..++.++.+++++.
T Consensus 86 ~di~eiv~yA~~rgI~--VIPEID~PGH~~a~l---~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 86 EEIREIVAYAAERGIT--VIPEIDMPGHALAAL---AAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred HHHHHHHHHHHHcCCE--EEEecCCchhHHHHH---HhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 5788999999999995 444544 55554443 335531 1112233333222223444444444432
Q ss_pred ----cCCeEEEe
Q psy4673 108 ----NTGNSTMN 115 (171)
Q Consensus 108 ----~~~vvaIG 115 (171)
..+.+=||
T Consensus 161 ~~lF~~~~iHiG 172 (357)
T cd06563 161 AELFPSPYIHIG 172 (357)
T ss_pred HHhCCCCeEEEe
Confidence 25788899
No 280
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=36.23 E-value=2.7e+02 Score=23.69 Aligned_cols=72 Identities=10% Similarity=0.148 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-h---hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc---CCeE
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-L---KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN---TGNS 112 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-~---~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~---~~vv 112 (171)
-+.++-+.++..|.+++++++.. . .-++++.+..++..-.+...-|+-|.. +.+.+++..+.++. +-|+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np----~~~~v~~~~~~~~~~~~D~Ii 93 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNP----TTENVAAGLKLLKENNCDSVI 93 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHHHcCCCEEE
Confidence 45666677778888887777643 2 235566665554431122233565532 22345555555543 3478
Q ss_pred EEe
Q psy4673 113 TMN 115 (171)
Q Consensus 113 aIG 115 (171)
|||
T Consensus 94 aiG 96 (383)
T PRK09860 94 SLG 96 (383)
T ss_pred EeC
Confidence 999
No 281
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=35.90 E-value=1.3e+02 Score=19.92 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSL 63 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~ 63 (171)
..++..++++++++.|+. +++++...
T Consensus 25 ~~~~~~~~l~~l~~~g~~-i~ivS~~~ 50 (139)
T cd01427 25 LYPGVKEALKELKEKGIK-LALATNKS 50 (139)
T ss_pred cCcCHHHHHHHHHHCCCe-EEEEeCch
Confidence 346788999999999986 44445544
No 282
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.83 E-value=37 Score=24.67 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhH-HHHhhhhhHhHhhhcCceE--EEecCCCcc
Q psy4673 124 TEIKQTLFTTFVDITAL-CEFCQKNFSRKEHLNRHLW--VHKDSSMMK 168 (171)
Q Consensus 124 ~~~Q~~~F~~ql~lA~~-~iH~r~a~~~~~~~~~p~i--iH~fsg~~~ 168 (171)
++.|..+|=.+ ||.+ ++...+++-...+.+||++ +|+.+|.-+
T Consensus 21 ~~L~~~l~GQh--la~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGK 66 (127)
T PF06309_consen 21 KDLQRNLFGQH--LAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGK 66 (127)
T ss_pred HHHHHHccCcH--HHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcH
Confidence 34455566554 4555 6777777765556778966 999999643
No 283
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.56 E-value=1.2e+02 Score=23.72 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
++...+.+.+.+.|++ ++-++. ++...+.+.++.++||+ +...+|
T Consensus 20 e~a~~~~~al~~~Gi~-~iEit~~t~~a~~~i~~l~~~~~~-~~vGAG 65 (204)
T TIGR01182 20 DDALPLAKALIEGGLR-VLEVTLRTPVALDAIRLLRKEVPD-ALIGAG 65 (204)
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHCCC-CEEEEE
Confidence 3455677778889997 455554 45555555667788886 444444
No 284
>PRK11579 putative oxidoreductase; Provisional
Probab=35.45 E-value=1.9e+02 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCEEEE---eCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccC
Q psy4673 42 ESVVQRAKDSGVQKIIA---IGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~---v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~ 109 (171)
.+++.+|-++|.. +++ ++.+.++.+++++++++.. +..++|.+-.+.+ ....+++++.+.
T Consensus 78 ~~~~~~al~aGkh-Vl~EKPla~t~~ea~~l~~~a~~~g--~~l~v~~~~R~~p-----~~~~~k~~i~~g 140 (346)
T PRK11579 78 FPLAKAALEAGKH-VVVDKPFTVTLSQARELDALAKSAG--RVLSVFHNRRWDS-----DFLTLKALLAEG 140 (346)
T ss_pred HHHHHHHHHCCCe-EEEeCCCCCCHHHHHHHHHHHHHhC--CEEEEEeeccCCH-----HHHHHHHHHhcC
Confidence 3455556667753 443 4456788888888888864 4567887765543 566777777654
No 285
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.30 E-value=2.6e+02 Score=23.18 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEEEE--eeeCCCCCCCCCHHHHHHHHHHhc------c-
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVYST--AGIHPHEAKSWDEDYIDQLRDLVS------N- 108 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~~~--~GiHP~~~~~~~~~~~~~l~~~l~------~- 108 (171)
+++.++++-|++.||. |++-.+ |......++ .+|...... .+..+....--.++..+.+.+++. .
T Consensus 82 ~di~eiv~yA~~rgI~--vIPEID~PGH~~a~~~---~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~ 156 (326)
T cd06564 82 EEFKELIAYAKDRGVN--IIPEIDSPGHSLAFTK---AMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP 156 (326)
T ss_pred HHHHHHHHHHHHcCCe--EeccCCCcHHHHHHHH---hhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999995 455554 555554443 233211100 111111111122344444444432 2
Q ss_pred -CCeEEEe-cCCCC-CCcHHHHHHHHHHHHHHhh
Q psy4673 109 -TGNSTMN-RYNSS-QWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 109 -~~vvaIG-Dy~~~-~~~~~~Q~~~F~~ql~lA~ 139 (171)
.+.+=|| |=+.. ....+.|..++.+..+..+
T Consensus 157 ~~~~~HiGgDE~~~~~~~~~~~~~f~~~~~~~v~ 190 (326)
T cd06564 157 KSDTVHIGADEYAGDAGYAEAFRAYVNDLAKYVK 190 (326)
T ss_pred CCCEEEeccccccccCccHHHHHHHHHHHHHHHH
Confidence 4788899 54443 2344555555544444443
No 286
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=35.22 E-value=2.3e+02 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcC
Q psy4673 44 VVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYP 77 (171)
Q Consensus 44 vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~ 77 (171)
.++++-+.|..+++.+-+ ++++.+.+.+.++ ||
T Consensus 76 ~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~-y~ 109 (249)
T TIGR02311 76 LIKQLLDIGAQTLLVPMIETAEQAEAAVAATR-YP 109 (249)
T ss_pred HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC-CC
Confidence 568888889988888776 5777888777776 54
No 287
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=34.86 E-value=2.3e+02 Score=22.47 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecC
Q psy4673 131 FTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164 (171)
Q Consensus 131 F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fs 164 (171)
+.+..++|+ ..+.++++|+..
T Consensus 220 ~~~~~~~A~-------------~~gi~~~~~~~~ 240 (265)
T cd03315 220 AQRVLAVAE-------------ALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHHH-------------HcCCcEEecCcc
Confidence 455567777 888999999753
No 288
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=34.47 E-value=41 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=10.1
Q ss_pred cCceEEEecCCC
Q psy4673 155 NRHLWVHKDSSM 166 (171)
Q Consensus 155 ~~p~iiH~fsg~ 166 (171)
+.|++|||..|.
T Consensus 39 ~~pvlVHC~~G~ 50 (105)
T smart00012 39 SGPVVVHCSAGV 50 (105)
T ss_pred CCCEEEEeCCCC
Confidence 579999999884
No 289
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=34.47 E-value=41 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=10.1
Q ss_pred cCceEEEecCCC
Q psy4673 155 NRHLWVHKDSSM 166 (171)
Q Consensus 155 ~~p~iiH~fsg~ 166 (171)
+.|++|||..|.
T Consensus 39 ~~pvlVHC~~G~ 50 (105)
T smart00404 39 SGPVVVHCSAGV 50 (105)
T ss_pred CCCEEEEeCCCC
Confidence 579999999884
No 290
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.23 E-value=1.3e+02 Score=24.47 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=41.1
Q ss_pred eEeeccCCCCCCCC----CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673 25 LIDVGANLTNRKFG----RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS 93 (171)
Q Consensus 25 ~iDtH~HL~~~~~~----~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~ 93 (171)
.||.=|=|.- .|. .+=++++.-...++|- +=-=+.||....+++++++++. | .+|-||.+.+.
T Consensus 3 ~idLN~DlGE-~fG~w~~g~D~~lmp~IssANIA-CG~HAGDp~~M~~tv~lA~~~g--V--~IGAHPgypD~ 69 (246)
T PRK05406 3 KIDLNCDLGE-SFGAWKMGDDEALLPLVTSANIA-CGFHAGDPAVMRRTVRLAKENG--V--AIGAHPGYPDL 69 (246)
T ss_pred eeEeecccCC-CCCCCCCCCHHHHHHHhhhHHHh-ccccCCCHHHHHHHHHHHHHcC--C--eEccCCCCCcc
Confidence 4777777764 222 2335566655555542 1112457899999999999985 3 79999998753
No 291
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=34.22 E-value=2.1e+02 Score=21.70 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHhcCCcEEEEeeeCCCCCCCCCHH-HHHHHHHHhcc-CCeEEEe
Q psy4673 71 RLARIYPGMVYSTAGIHPHEAKSWDED-YIDQLRDLVSN-TGNSTMN 115 (171)
Q Consensus 71 ~l~~~~~~~v~~~~GiHP~~~~~~~~~-~~~~l~~~l~~-~~vvaIG 115 (171)
+-++-++. ++.+++.+|.-.+-++-+ -.+.+++...+ +++--+|
T Consensus 24 RA~~~Fd~-viVaV~~np~K~plFsleER~~l~~~~~~~l~nV~V~~ 69 (159)
T COG0669 24 RASALFDE-VIVAVAINPSKKPLFSLEERVELIREATKHLPNVEVVG 69 (159)
T ss_pred HHHHhccE-EEEEEEeCCCcCCCcCHHHHHHHHHHHhcCCCceEEEe
Confidence 33444554 889999999887766533 33444444443 5555555
No 292
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=34.20 E-value=87 Score=26.90 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCc--EEEEeeeCC
Q psy4673 66 SKEALRLARIYPGM--VYSTAGIHP 88 (171)
Q Consensus 66 ~~~~~~l~~~~~~~--v~~~~GiHP 88 (171)
-..++++++++|++ ||.++|+=-
T Consensus 118 pldAl~iA~~nP~k~vVF~avGFET 142 (364)
T PRK15062 118 PLDALKIARENPDKEVVFFAIGFET 142 (364)
T ss_pred HHHHHHHHHHCCCCeEEEEecCchh
Confidence 34668899999864 889999864
No 293
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=34.15 E-value=2.5e+02 Score=22.57 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcCCCEE------EEeCCChhhHHHHHHHHHhcCC-cEEEEeeeCCCCCCCCCHHHHHHHHHHhc
Q psy4673 40 DLESVVQRAKDSGVQKI------IAIGSSLKSSKEALRLARIYPG-MVYSTAGIHPHEAKSWDEDYIDQLRDLVS 107 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~------i~v~~~~~~~~~~~~l~~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~l~ 107 (171)
+.++++..|-++|.+-+ +.+-|+|.++..+.+-.++... ..-.-+++-|...-..+++..+.+.+++.
T Consensus 148 ~~d~~~e~aieaGAedv~~~~~~~~v~~~~~~~~~v~~~L~~~g~~i~~sei~~~P~~~v~l~~e~~~~~~~li~ 222 (238)
T TIGR01033 148 DEEDLMEAAIEAGAEDIDVDDDEFEVYTAPEELEKVKEALEAKGFPIESAEITMIPLTTVDLDDEQAEKLLKLID 222 (238)
T ss_pred CHHHHHHHHHhCCCceeeccCCcEEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCCcccCHHHHHHHHHHHH
Confidence 45778888888887555 6678889988888775554431 23456888897655566666776766653
No 294
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=33.97 E-value=1.8e+02 Score=20.95 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~ 66 (171)
.+...++++.+++.|+. +++++.+...+
T Consensus 75 ~~g~~~~l~~l~~~g~~-~~ivS~~~~~~ 102 (177)
T TIGR01488 75 RPGARELISWLKERGID-TVIVSGGFDFF 102 (177)
T ss_pred CcCHHHHHHHHHHCCCE-EEEECCCcHHH
Confidence 46788999999999985 55556665543
No 295
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=33.80 E-value=1e+02 Score=25.69 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCcccc
Q psy4673 122 WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKEL 170 (171)
Q Consensus 122 ~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~~el 170 (171)
.+++.-.++..+|.+|+. +++.|.++|.+..+.+.|
T Consensus 44 FDk~~Ae~Li~~q~elsd-------------~TGnp~~~~I~~~s~EA~ 79 (296)
T PF02007_consen 44 FDKEAAEALINRQEELSD-------------ETGNPCIVDIVAESPEAM 79 (296)
T ss_pred cCHHHHHHHHHHHHHHHH-------------HhCCCeEEEEecCCHHHH
Confidence 367888999999999999 888888888877776543
No 296
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=33.43 E-value=92 Score=26.81 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCc--EEEEeeeCC
Q psy4673 66 SKEALRLARIYPGM--VYSTAGIHP 88 (171)
Q Consensus 66 ~~~~~~l~~~~~~~--v~~~~GiHP 88 (171)
-..++++++++|++ ||.++|+=-
T Consensus 124 pldAl~iA~~nPdk~VVF~avGFET 148 (369)
T TIGR00075 124 PMDALKIAKENPDRKVVFFAIGFET 148 (369)
T ss_pred HHHHHHHHHHCCCCeEEEEecCchh
Confidence 34668899999874 899999864
No 297
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=33.42 E-value=79 Score=22.19 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=10.6
Q ss_pred hhcCceEEEecCCC
Q psy4673 153 HLNRHLWVHKDSSM 166 (171)
Q Consensus 153 ~~~~p~iiH~fsg~ 166 (171)
+.+.|+.|||..|.
T Consensus 76 ~~~~~VlVHC~~G~ 89 (138)
T smart00195 76 KKGGKVLVHCQAGV 89 (138)
T ss_pred cCCCeEEEECCCCC
Confidence 56678888888773
No 298
>PRK12569 hypothetical protein; Provisional
Probab=33.41 E-value=58 Score=26.42 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=41.0
Q ss_pred eEeeccCCCCCCCC----CC--HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673 25 LIDVGANLTNRKFG----RD--LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS 93 (171)
Q Consensus 25 ~iDtH~HL~~~~~~----~d--~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~ 93 (171)
-||.=|=|.- .|. .+ =++++.-...++|- +=-=+.||....+.++|++++. | .+|-||.+.+.
T Consensus 4 ~idLN~DlGE-sfG~~~~g~~~D~~lmp~ItsaNIA-CG~HAGDp~~M~~tv~lA~~~~--V--~IGAHPsyPD~ 72 (245)
T PRK12569 4 SIDLNSDMGE-GFGPWRIGDGVDEALMPLISSANIA-TGFHAGDPNIMRRTVELAKAHG--V--GIGAHPGFRDL 72 (245)
T ss_pred eEEeccccCC-CCCCcCCCCccHHHHHHHhhhHHHh-ccccCCCHHHHHHHHHHHHHcC--C--EeccCCCCCcC
Confidence 4777777764 232 22 34566555555542 1112457899999999999985 3 79999998753
No 299
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=32.93 E-value=2.1e+02 Score=21.44 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCh-------hhHHHHHHHHHhc---CCcEEEEeeeCCCCC
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSL-------KSSKEALRLARIY---PGMVYSTAGIHPHEA 91 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~-------~~~~~~~~l~~~~---~~~v~~~~GiHP~~~ 91 (171)
++++++.+.+.+++.++..|--. ..+..+.+..++. .-.++...|-|=...
T Consensus 30 ~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 30 FEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPS 90 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCcc
Confidence 57777888888998766655322 1233444443333 212788999996543
No 300
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=32.81 E-value=1.5e+02 Score=27.66 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEE-Eec
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNST-MNR 116 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vva-IGD 116 (171)
.++..+.++++++.|++.+++.|.++.... .++++-. + --..+...+++-++.++++=+..++|| +||
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~---aIA~elG--I------d~v~A~~~PedK~~iV~~lQ~~G~~VaMtGD 515 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAA---AIAAEAG--V------DDFLAEATPEDKLALIRQEQAEGRLVAMTGD 515 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcC--C------cEEEccCCHHHHHHHHHHHHHcCCeEEEECC
Confidence 467888999999999976555555555443 3444432 1 001122122333444454434456664 884
Q ss_pred C
Q psy4673 117 Y 117 (171)
Q Consensus 117 y 117 (171)
-
T Consensus 516 G 516 (679)
T PRK01122 516 G 516 (679)
T ss_pred C
Confidence 3
No 301
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=32.72 E-value=2.3e+02 Score=21.80 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcC---CcEEEEeeeCCCCCC---CCCHHHHHHHHHHhc
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYP---GMVYSTAGIHPHEAK---SWDEDYIDQLRDLVS 107 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~---~~v~~~~GiHP~~~~---~~~~~~~~~l~~~l~ 107 (171)
.+.+++.+.+.+++.++..|-- +++|....++.+... --++.+.|=|=.... ...++.++.|++.|+
T Consensus 24 ~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~~~ld~~~~~~ql~WL~~~L~ 102 (214)
T cd07399 24 TDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHDLVLALEFGPRDEVLQWANEVLK 102 (214)
T ss_pred HHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCcchhhCCCCCCHHHHHHHHHHHH
Confidence 4556677777788766665531 345555554443321 115677888842111 112345555555543
No 302
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=32.62 E-value=2.1e+02 Score=21.34 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
..++++..++.|+.-.|+.+.........++
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~ 141 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAKFLT 141 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 4788999999998754444444444444444
No 303
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.20 E-value=1e+02 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCChh
Q psy4673 42 ESVVQRAKDSGVQKIIAIGSSLK 64 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~~~~ 64 (171)
-.+++.+++.|++. +.+-++++
T Consensus 15 ~r~~ra~r~~Gi~t-v~v~s~~d 36 (110)
T PF00289_consen 15 VRIIRALRELGIET-VAVNSNPD 36 (110)
T ss_dssp HHHHHHHHHTTSEE-EEEEEGGG
T ss_pred HHHHHHHHHhCCcc-eeccCchh
Confidence 45677888888865 44444443
No 304
>PRK14085 imidazolonepropionase; Provisional
Probab=32.01 E-value=22 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=9.5
Q ss_pred ceEeeccCCCC
Q psy4673 24 VLIDVGANLTN 34 (171)
Q Consensus 24 ~~iDtH~HL~~ 34 (171)
.|||+|+|+..
T Consensus 64 GlId~H~Hl~~ 74 (382)
T PRK14085 64 GFVDSHSHLVF 74 (382)
T ss_pred CeEecCcCccc
Confidence 49999999964
No 305
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=31.82 E-value=2.4e+02 Score=21.78 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH---HHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-c-CCe
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR---LARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS-N-TGN 111 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~---l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~-~-~~v 111 (171)
..+...++++..++.|+.-.|+.+...+.....++ +.+.+. .++.+ +-.+. .+..++-+..+.+.+. . ..+
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd-~iv~s-~~~~~--~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLD-LLLST-HTFGY--PKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCC-EEEEe-eeCCC--CCCCHHHHHHHHHHcCCChHHE
Confidence 34688999999999998644444444444444333 223333 24433 22221 1233344444433333 2 358
Q ss_pred EEEec
Q psy4673 112 STMNR 116 (171)
Q Consensus 112 vaIGD 116 (171)
+.|||
T Consensus 170 l~igD 174 (224)
T PRK14988 170 LFIDD 174 (224)
T ss_pred EEEcC
Confidence 88886
No 306
>PRK08005 epimerase; Validated
Probab=31.73 E-value=2.6e+02 Score=22.01 Aligned_cols=14 Identities=0% Similarity=-0.256 Sum_probs=6.3
Q ss_pred HHHHHHHHHhcCCC
Q psy4673 41 LESVVQRAKDSGVQ 54 (171)
Q Consensus 41 ~~~vl~~a~~~gv~ 54 (171)
++..++...++|.+
T Consensus 70 P~~~i~~~~~~gad 83 (210)
T PRK08005 70 PQRWLPWLAAIRPG 83 (210)
T ss_pred HHHHHHHHHHhCCC
Confidence 34444444444443
No 307
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=31.44 E-value=1.1e+02 Score=25.27 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChh--hHHHHHHHHHhc
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLK--SSKEALRLARIY 76 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~--~~~~~~~l~~~~ 76 (171)
...+++++|.+.||+.+++++.... +-++++++++++
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERK 115 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 3567788899999999888877543 334788888876
No 308
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.09 E-value=3.1e+02 Score=22.80 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEE--------EEeeeCCCCCCCCCHHHHHHHHHHhc--
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVY--------STAGIHPHEAKSWDEDYIDQLRDLVS-- 107 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~--------~~~GiHP~~~~~~~~~~~~~l~~~l~-- 107 (171)
+|+.++++-|+..||. |++-.+ |......+ +.||.... ...|+++....-..++..+.+.+++.
T Consensus 68 ~di~elv~yA~~rgI~--vIPEId~PGH~~a~~---~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~ 142 (311)
T cd06570 68 EQIREVVAYARDRGIR--VVPEIDVPGHASAIA---VAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEM 142 (311)
T ss_pred HHHHHHHHHHHHcCCE--EEEeecCccchHHHH---HhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHH
Confidence 3789999999999995 455554 44444322 34554111 11344433222223445555555443
Q ss_pred ----cCCeEEEe
Q psy4673 108 ----NTGNSTMN 115 (171)
Q Consensus 108 ----~~~vvaIG 115 (171)
..+.+=||
T Consensus 143 ~~lF~~~~iHiG 154 (311)
T cd06570 143 AELFPDEYFHIG 154 (311)
T ss_pred HHhCCCCceEee
Confidence 24688899
No 309
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=30.95 E-value=1.7e+02 Score=24.38 Aligned_cols=72 Identities=10% Similarity=0.067 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCc-EEEEeeeCCCCCCCC-----CHHHHHHHHHHhccCCeEE
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM-VYSTAGIHPHEAKSW-----DEDYIDQLRDLVSNTGNST 113 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~~-----~~~~~~~l~~~l~~~~vva 113 (171)
....+|++|++.|+-.|-+-.......+-..+|.++|.-. +... |....+. .....+.|.+++....++|
T Consensus 45 ~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fgLk~~iVv----p~~~~~~~~~~vg~~aA~~L~~~l~~~~~IG 120 (318)
T PRK15418 45 KVSRLLEKGRQSGIIRVQINSRFEGCLELENALRQHFSLQHIRVL----PALADADIGGRLGIGAAHMLMSLLQPQQLLA 120 (318)
T ss_pred HHHHHHHHHHHcCcEEEEEeCCCccHHHHHHHHHHHhCCCEEEEE----eCCCcccHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 4667888999999866444322222233334466777521 1111 3211111 1122344555566667778
Q ss_pred Ee
Q psy4673 114 MN 115 (171)
Q Consensus 114 IG 115 (171)
||
T Consensus 121 vs 122 (318)
T PRK15418 121 VG 122 (318)
T ss_pred Ec
Confidence 77
No 310
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=30.89 E-value=2.6e+02 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
.+...++++..++.|+.-.|+.+.........++
T Consensus 110 ~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~ 143 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLKRAAVTNAPRENAELMIS 143 (248)
T ss_pred CccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 4678899999999999655554445555544444
No 311
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=30.76 E-value=2.8e+02 Score=22.12 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcCCCE--EEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC-CCCHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQK--IIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK-SWDEDYIDQLR 103 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~--~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~-~~~~~~~~~l~ 103 (171)
++..+++..++.|++. .+.++|+++.....+.. - +. ..-+.+-|-+.. .+.+..++.+.
T Consensus 96 ~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~---v-D~-VLvMsV~PGf~GQ~fi~~~l~KI~ 157 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL---L-DK-ITVMTVDPGFAGQPFIPEMLDKIA 157 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh---c-CE-EEEEEEcCCCcchhccHHHHHHHH
Confidence 3455666667777654 33444555555444432 2 22 234666776654 34454444443
No 312
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=30.54 E-value=2.4e+02 Score=21.31 Aligned_cols=44 Identities=20% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHHHhcC---CCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 43 SVVQRAKDSG---VQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 43 ~vl~~a~~~g---v~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
..++..+..+ ..++.++|.+..-.-. +.++...+. +-+++++||
T Consensus 84 aa~~~l~~~~~~~~~kig~vGfc~GG~~a-~~~a~~~~~-~~a~v~~yg 130 (218)
T PF01738_consen 84 AAVDYLRAQPEVDPGKIGVVGFCWGGKLA-LLLAARDPR-VDAAVSFYG 130 (218)
T ss_dssp HHHHHHHCTTTCEEEEEEEEEETHHHHHH-HHHHCCTTT-SSEEEEES-
T ss_pred HHHHHHHhccccCCCcEEEEEEecchHHh-hhhhhhccc-cceEEEEcC
Confidence 3344455544 4578999999887653 445555554 678999999
No 313
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.34 E-value=2e+02 Score=23.13 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcC--C-cEEEEeeeCCCCCCCCCHHHHHHHHHH
Q psy4673 42 ESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYP--G-MVYSTAGIHPHEAKSWDEDYIDQLRDL 105 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~--~-~v~~~~GiHP~~~~~~~~~~~~~l~~~ 105 (171)
-.+|+++.+.|..-++..|. +.++.+++++..++.. + .+.-|+.-.|....+.+=..+..|++.
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKER 170 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHh
Confidence 35778888888765555554 4677888888763322 2 256788888886655443456666654
No 314
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=30.22 E-value=2.4e+02 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCEEEEeCCC
Q psy4673 44 VVQRAKDSGVQKIIAIGSS 62 (171)
Q Consensus 44 vl~~a~~~gv~~~i~v~~~ 62 (171)
.++.+.+.|++.+++.+.+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 86 QIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHcCCCEEEEeecc
Confidence 4677777788776654443
No 315
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=30.22 E-value=96 Score=25.41 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
.+.+..++.+.+.|.+-++..|.... +.+.+++++||+..|..++-
T Consensus 48 ~~~~~~~~~~~~~g~dlIi~~g~~~~--~~~~~vA~~yPd~~F~~~d~ 93 (306)
T PF02608_consen 48 ADYEEAIRQLADQGYDLIIGHGFEYS--DALQEVAKEYPDTKFIIIDG 93 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESGGGH--HHHHHHHTC-TTSEEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHCCCCEEEEEec
Confidence 46778888888889886666555544 46677899999865555543
No 316
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=30.13 E-value=3.1e+02 Score=22.43 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC
Q psy4673 43 SVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK 92 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~ 92 (171)
.=+++|.+.|.+++-+.-.++++.+++.++-+.++-.+ +.+|+|-.-..
T Consensus 153 ~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~-~if~VHtTGis 201 (259)
T TIGR03275 153 KGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDI-IIFAVHTTGID 201 (259)
T ss_pred HHHHHHHHcCCceEEEEecCHHHHHHHHHhccccCCcE-EEEEEECCCCC
Confidence 33467788888875444457788888877766554333 46999987653
No 317
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.09 E-value=1.6e+02 Score=22.95 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCCcEEEEee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPGMVYSTAG 85 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~~v~~~~G 85 (171)
++...+++.+.+.|+. ++-++.+ +...+.+.++.++||+ +...+|
T Consensus 16 ~~a~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~-~~vGAG 61 (201)
T PRK06015 16 EHAVPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEE-AIVGAG 61 (201)
T ss_pred HHHHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCC-CEEeeE
Confidence 3556677888889997 5655654 5555555567788886 444444
No 318
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.78 E-value=1.7e+02 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHHHHhcCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRLARIYPG 78 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l~~~~~~ 78 (171)
++...+++.+.+.|++ ++-++.+ +...+.+..+.++||.
T Consensus 22 ~~~~~~~~a~~~gGi~-~iEvt~~~~~~~~~i~~l~~~~~~ 61 (206)
T PRK09140 22 DEALAHVGALIEAGFR-AIEIPLNSPDPFDSIAALVKALGD 61 (206)
T ss_pred HHHHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHcCC
Confidence 4567778888999996 6666654 4444556667888874
No 319
>PRK00035 hemH ferrochelatase; Reviewed
Probab=29.71 E-value=3.2e+02 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCCh
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSL 63 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~ 63 (171)
+.+++.++++.+.|++.++++..-|
T Consensus 105 P~i~eal~~l~~~G~~~IivlPL~p 129 (333)
T PRK00035 105 PSIEEALEALKADGVDRIVVLPLYP 129 (333)
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCC
Confidence 5789999999999999988887766
No 320
>PTZ00066 pyruvate kinase; Provisional
Probab=29.63 E-value=4.3e+02 Score=23.91 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCCCC-CCCCCHHHHHHHHHHhccC--CeEEE
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHPHE-AKSWDEDYIDQLRDLVSNT--GNSTM 114 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP~~-~~~~~~~~~~~l~~~l~~~--~vvaI 114 (171)
.|.+.+++.+-+.||+.+-...+ ++++...+.++.++.. -|+.- +.=.+.+.++.|.+.+... =+||=
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g--------~~~~IiAKIE~~~av~NldeIl~~sDGIMVAR 281 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERG--------RHIKIIPKIENIEGLINFDEILAESDGIMVAR 281 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCC--------CCceEEEEECCHHHHHHHHHHHHhcCEEEEEc
Confidence 46666667888999986433333 6778888888776542 12221 2223446777788777643 35566
Q ss_pred ecCCCCC---CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673 115 NRYNSSQ---WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH 161 (171)
Q Consensus 115 GDy~~~~---~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH 161 (171)
||-.-+- .-...|+++ ++.|. +.++|+|+=
T Consensus 282 GDLGvEip~e~vp~~QK~I----I~~c~-------------~~gkPVIvA 314 (513)
T PTZ00066 282 GDLGMEIPPEKVFLAQKMM----ISKCN-------------VAGKPVITA 314 (513)
T ss_pred cccccccChHHcchHHHHH----HHHHH-------------HhCCCEEEe
Confidence 6765431 123457554 47787 888998864
No 321
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.63 E-value=2e+02 Score=24.03 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCe-EEEe
Q psy4673 64 KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGN-STMN 115 (171)
Q Consensus 64 ~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~v-vaIG 115 (171)
+-.++..+-+=..++.|-.++|.-|...+ ++.++.|.++.+.-.+ +.+|
T Consensus 100 evLre~ye~aL~~~~VVGLsIgTRPDClp---d~VldlL~e~~~r~~vWvELG 149 (312)
T COG1242 100 EVLREMYEQALSEAGVVGLSIGTRPDCLP---DDVLDLLAEYNKRYEVWVELG 149 (312)
T ss_pred HHHHHHHHHHhCcCCeeEEeecCCCCCCc---HHHHHHHHHHhhheEEEEEec
Confidence 34444444444556666677888887654 4567777776554222 3566
No 322
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=29.63 E-value=2.1e+02 Score=21.28 Aligned_cols=46 Identities=33% Similarity=0.344 Sum_probs=29.8
Q ss_pred ChhhHHHHHH-HH-HhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc
Q psy4673 62 SLKSSKEALR-LA-RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN 108 (171)
Q Consensus 62 ~~~~~~~~~~-l~-~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~ 108 (171)
+.++.++++. |. -+.|+ +|--+|.=|-++=...+++.+.|+++-++
T Consensus 14 sL~e~r~aIh~LLd~Rd~~-~WMLFGTLPfy~Cs~~eeD~~Ll~RL~~~ 61 (153)
T PF08756_consen 14 SLDEMREAIHRLLDIRDPN-VWMLFGTLPFYPCSDDEEDLALLKRLRSE 61 (153)
T ss_pred CHHHHHHHHHHHHhccCCC-eeEEecccccccCCCCHHHHHHHHHHHhC
Confidence 4455555543 22 34465 78788888877666667788888887654
No 323
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.52 E-value=1.4e+02 Score=22.14 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=27.9
Q ss_pred cCCCEEEEeCCChh---hHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeE
Q psy4673 51 SGVQKIIAIGSSLK---SSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS 112 (171)
Q Consensus 51 ~gv~~~i~v~~~~~---~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vv 112 (171)
.|+.+++++-++=. +.....+.++... ...+++|+-+ . ..++|+.+..+|..|
T Consensus 104 ~~~~kv~vviTdG~s~d~~~~~a~~lr~~g-v~i~~vG~~~-----~---~~~eL~~ias~p~~v 159 (165)
T cd01481 104 EGVPQFLVLITGGKSQDDVERPAVALKRAG-IVPFAIGARN-----A---DLAELQQIAFDPSFV 159 (165)
T ss_pred CCCCeEEEEEeCCCCcchHHHHHHHHHHCC-cEEEEEeCCc-----C---CHHHHHHHhCCCccE
Confidence 35666554444322 2333344445554 4556788752 1 255777777776533
No 324
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.48 E-value=3.2e+02 Score=22.45 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc------cCCe
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS------NTGN 111 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~------~~~v 111 (171)
+++.++++.|++.||+ |++.. .|......++. .++.. ....+..|....-..++..+.+++++. ..+.
T Consensus 60 ~ei~ei~~yA~~~gI~--vIPeid~pGH~~~~l~~-~~~~~--l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~ 134 (301)
T cd06565 60 EEIREIDDYAAELGIE--VIPLIQTLGHLEFILKH-PEFRH--LREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKY 134 (301)
T ss_pred HHHHHHHHHHHHcCCE--EEecCCCHHHHHHHHhC-ccccc--ccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCe
Confidence 5788999999999996 44554 36666555432 12221 111221122222123345555555443 2578
Q ss_pred EEEe-cC
Q psy4673 112 STMN-RY 117 (171)
Q Consensus 112 vaIG-Dy 117 (171)
+=|| |=
T Consensus 135 ~HIG~DE 141 (301)
T cd06565 135 IHIGMDE 141 (301)
T ss_pred EEECCCc
Confidence 8899 53
No 325
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=29.20 E-value=1.5e+02 Score=24.04 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=40.8
Q ss_pred ceEeeccCCCCCCCC----CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC
Q psy4673 24 VLIDVGANLTNRKFG----RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK 92 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~----~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~ 92 (171)
+-||.-|=|.. .|. .+=++++.--..++|- +=.=+.||....+.++++.++. | ++|-||.+.+
T Consensus 2 ~~iDLN~DlGE-~fG~w~mG~De~~l~lvsSANIA-CGfHAGDp~~M~rtV~lA~e~g--V--~IGAHPgyPD 68 (252)
T COG1540 2 MKIDLNADLGE-GFGAWRMGDDEALLPLVSSANIA-CGFHAGDPLTMRRTVRLAKENG--V--AIGAHPGYPD 68 (252)
T ss_pred Cceeccccccc-ccCCcccCCcHHHHHHHhhhhHh-hcccCCCHHHHHHHHHHHHHcC--C--eeccCCCCcc
Confidence 34676666653 121 2335666666666653 2223458889999999999875 3 7999998765
No 326
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.99 E-value=1.9e+02 Score=22.46 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH-HHHhcCCcEEEEee
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR-LARIYPGMVYSTAG 85 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~-l~~~~~~~v~~~~G 85 (171)
++...+++.+.+.|+. ++-++.+-..+.++++ +.+++|+ +...+|
T Consensus 20 ~~a~~~~~al~~gGi~-~iEiT~~t~~a~~~I~~l~~~~p~-~~vGAG 65 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIR-AIEITLRTPNALEAIEALRKEFPD-LLVGAG 65 (196)
T ss_dssp GGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHHHCCCC-EEEEecCCccHHHHHHHHHHHCCC-CeeEEE
Confidence 5677788888899996 6777765555555555 7888997 444444
No 327
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=28.92 E-value=63 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCC
Q psy4673 62 SLKSSKEALRLARIYPGMVYSTAGIHPHEAKS 93 (171)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~ 93 (171)
||....+.+++++++. | .+|-||.+.+.
T Consensus 40 Dp~~M~~tv~lA~~~g--V--~iGAHPsyPD~ 67 (242)
T PF03746_consen 40 DPETMRRTVRLAKEHG--V--AIGAHPSYPDR 67 (242)
T ss_dssp -HHHHHHHHHHHHHTT-----EEEEE---S-T
T ss_pred CHHHHHHHHHHHHHcC--C--EeccCCCCCCC
Confidence 6888999999999985 3 79999998763
No 328
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=28.28 E-value=2e+02 Score=22.03 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhc--CCCEEEEeCC-----ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHH-------
Q psy4673 40 DLESVVQRAKDS--GVQKIIAIGS-----SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDL------- 105 (171)
Q Consensus 40 d~~~vl~~a~~~--gv~~~i~v~~-----~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~------- 105 (171)
.++.+++.+.+. +++.+|..|- .+++++...++.++.+-.++...|=|=... ...+.+...
T Consensus 26 ~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~-----~~~~~~~~~~~~~~~~ 100 (240)
T cd07402 26 SLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNHDDRA-----AMRAVFPELPPAPGFV 100 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCCCCHH-----HHHHhhcccccccccc
Confidence 456777777776 7876666554 234566666665555433688899885421 111111111
Q ss_pred ---hccCCeEEEe-cCCCC----CCcHHHHHHHHHHHHHHhh
Q psy4673 106 ---VSNTGNSTMN-RYNSS----QWITEIKQTLFTTFVDITA 139 (171)
Q Consensus 106 ---l~~~~vvaIG-Dy~~~----~~~~~~Q~~~F~~ql~lA~ 139 (171)
.....+.-|| |.... ..-.+.|.++++.+|+-+.
T Consensus 101 ~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~ 142 (240)
T cd07402 101 QYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP 142 (240)
T ss_pred ceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC
Confidence 0112233344 43221 1124679999999998875
No 329
>PRK09453 phosphodiesterase; Provisional
Probab=28.19 E-value=1.9e+02 Score=21.50 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=36.6
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChh-----------hHHHHHHHHHhcCCcEEEEeeeCCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLK-----------SSKEALRLARIYPGMVYSTAGIHPH 89 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~-----------~~~~~~~l~~~~~~~v~~~~GiHP~ 89 (171)
-+-|+|-.+ ..++++++.+.+.+++.++..|--.. ...++++..++....++...|=|=.
T Consensus 5 viSD~Hg~~------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 5 FASDTHGSL------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDS 75 (182)
T ss_pred EEEeccCCH------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcc
Confidence 467998432 24677888887788887777664221 1345566555543236777887754
No 330
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.16 E-value=3.3e+02 Score=22.22 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHH-hcCCcEEEEeeeCCCCCC
Q psy4673 42 ESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR-IYPGMVYSTAGIHPHEAK 92 (171)
Q Consensus 42 ~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~-~~~~~v~~~~GiHP~~~~ 92 (171)
-.=+++|.+.|.+++-+.-+++++..++.+|-+ .+++ + +.+|+|-.-..
T Consensus 152 ~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRele~~~~~~-~-~if~VHtTGis 201 (258)
T PF09872_consen 152 VEGVKKAIEMGYKRIAVTVADAEDAKKIRELEKEEGVN-I-YIFGVHTTGIS 201 (258)
T ss_pred HHHHHHHHHcCCceEEEEecCHHHHHHHHHhhccCCCc-e-EEEEEEccCCC
Confidence 334567888888875554457778887777755 3454 3 46999987654
No 331
>PRK08238 hypothetical protein; Validated
Probab=27.90 E-value=3.3e+02 Score=24.21 Aligned_cols=75 Identities=8% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCChhh-HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEE
Q psy4673 36 KFGRDLESVVQRAKDSGVQKIIAIGSSLKS-SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTM 114 (171)
Q Consensus 36 ~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~-~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaI 114 (171)
++.++..+.+++.++.|..- ++++..++. .+...+...-++ .+.++=+..+... +...+.+.+.+.+..++.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v-~LaTas~~~~a~~i~~~lGlFd-~Vigsd~~~~~kg----~~K~~~l~~~l~~~~~~yv 145 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKL-VLATASDERLAQAVAAHLGLFD-GVFASDGTTNLKG----AAKAAALVEAFGERGFDYA 145 (479)
T ss_pred CCChhHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHcCCCC-EEEeCCCccccCC----chHHHHHHHHhCccCeeEe
Confidence 35578899999999999864 444554444 333322211122 2333323222211 1223445555555557778
Q ss_pred ec
Q psy4673 115 NR 116 (171)
Q Consensus 115 GD 116 (171)
||
T Consensus 146 GD 147 (479)
T PRK08238 146 GN 147 (479)
T ss_pred cC
Confidence 84
No 332
>PLN02940 riboflavin kinase
Probab=27.58 E-value=3.3e+02 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHH
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEA 69 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~ 69 (171)
..+...++++.+++.|+.-.|+.+.........
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~ 126 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRANIEAK 126 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHH
Confidence 346889999999999997555545444444433
No 333
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.55 E-value=2.4e+02 Score=23.64 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=43.0
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCC----HHHHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD----EDYID 100 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~----~~~~~ 100 (171)
-+++|||-+ .+++.+++.+++.|+. +++..+... +..+..+++ . + +...++ |....... ...+.
T Consensus 194 ~v~vHa~~~-----~~i~~~l~~~~e~g~~-~~i~H~~~~-~~~~~~la~-~-g-v~v~~~--P~~~~~~~~~~~~~~~~ 261 (359)
T cd01309 194 PVRIHAHRA-----DDILTAIRIAKEFGIK-ITIEHGAEG-YKLADELAK-H-G-IPVIYG--PTLTLPKKVEEVNDAID 261 (359)
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHcCCC-EEEECchhH-HHHHHHHHH-c-C-CCEEEC--ccccccccHHHhhcchh
Confidence 478888743 4678888888889997 333333322 444434444 3 2 333333 33211111 01223
Q ss_pred HHHHHhccC-CeEEEe-cCCC
Q psy4673 101 QLRDLVSNT-GNSTMN-RYNS 119 (171)
Q Consensus 101 ~l~~~l~~~-~vvaIG-Dy~~ 119 (171)
.+..+.... -.+++| |+.+
T Consensus 262 ~~~~l~~aGGv~valgsD~~~ 282 (359)
T cd01309 262 TNAYLLKKGGVAFAISSDHPV 282 (359)
T ss_pred hHHHHHHcCCceEEEECCCCC
Confidence 334444554 567999 8754
No 334
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=27.54 E-value=2.2e+02 Score=26.60 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeE-EEec
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNS-TMNR 116 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vv-aIGD 116 (171)
.++..+.++++++.|++-+++.|.++.... .++++-. .-..-.+.-| ++-.+.++++-+..+.| .+||
T Consensus 448 Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~---~iA~~lG-I~~v~a~~~P-------edK~~~v~~lq~~g~~VamvGD 516 (675)
T TIGR01497 448 KGGIKERFAQLRKMGIKTIMITGDNRLTAA---AIAAEAG-VDDFIAEATP-------EDKIALIRQEQAEGKLVAMTGD 516 (675)
T ss_pred hhHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHHHcC-CCEEEcCCCH-------HHHHHHHHHHHHcCCeEEEECC
Confidence 357788899999999975554444444433 3344432 1011123333 33455556554455544 5884
No 335
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=27.49 E-value=1.6e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhh--HHHHHHHHHhc
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKS--SKEALRLARIY 76 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~--~~~~~~l~~~~ 76 (171)
...+++++|.+.|++.+++++..... -+++++.++++
T Consensus 75 ~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~ 113 (286)
T TIGR01019 75 FAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEES 113 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 35677888999999998888775433 35777888877
No 336
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=27.42 E-value=3.1e+02 Score=25.85 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC-eEEEe
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG-NSTMN 115 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~-vvaIG 115 (171)
..++..+.+++.++.|++.++..|.+....+. ++++- ||-=.++.-.+++-.+.++++-.+.+ +..||
T Consensus 538 ~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~---iA~~l--------GId~v~AellPedK~~~V~~l~~~g~~VamVG 606 (713)
T COG2217 538 LRPDAKEAIAALKALGIKVVMLTGDNRRTAEA---IAKEL--------GIDEVRAELLPEDKAEIVRELQAEGRKVAMVG 606 (713)
T ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HHHHc--------ChHhheccCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 34688899999999999855555555444433 33432 22112222233345556666544544 44588
Q ss_pred c
Q psy4673 116 R 116 (171)
Q Consensus 116 D 116 (171)
|
T Consensus 607 D 607 (713)
T COG2217 607 D 607 (713)
T ss_pred C
Confidence 4
No 337
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.42 E-value=3.7e+02 Score=22.48 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHH
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS-LKSSKEAL 70 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~ 70 (171)
+++.++++-|++.||. |++-.+ |......+
T Consensus 75 ~di~elv~yA~~rgI~--vIPEiD~PGH~~a~~ 105 (329)
T cd06568 75 EDYKDIVAYAAERHIT--VVPEIDMPGHTNAAL 105 (329)
T ss_pred HHHHHHHHHHHHcCCE--EEEecCCcHHHHHHH
Confidence 4788999999999995 555654 55554433
No 338
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.05 E-value=2.2e+02 Score=19.66 Aligned_cols=79 Identities=5% Similarity=-0.021 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChh----h--HHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--c-
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLK----S--SKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--N- 108 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~----~--~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~- 108 (171)
.++..++++.+++.|+. +++++.... . ...+..+.+...-..+..+..+. ..+...+.+..+.+.+. .
T Consensus 27 ~~~v~~~l~~L~~~g~~-l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~KP~~~~~~~~~~~~~~~~~ 103 (132)
T TIGR01662 27 YPEVPDALAELKEAGYK-VVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACPH--CRKPKPGMFLEALKRFNEIDP 103 (132)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCChHHHHHHHHHcCCCCh
Confidence 36788899999999986 444454431 1 22233344444321122222221 11223344554444442 2
Q ss_pred CCeEEEec-CCC
Q psy4673 109 TGNSTMNR-YNS 119 (171)
Q Consensus 109 ~~vvaIGD-y~~ 119 (171)
..++.||| ...
T Consensus 104 ~~~v~IGD~~~~ 115 (132)
T TIGR01662 104 EESVYVGDQDLT 115 (132)
T ss_pred hheEEEcCCCcc
Confidence 46899998 443
No 339
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=26.99 E-value=2.4e+02 Score=22.40 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-----h---hhHHHHHHHHHhcCCcEEEEeeeCCCC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-----L---KSSKEALRLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-----~---~~~~~~~~l~~~~~~~v~~~~GiHP~~ 90 (171)
.++.+++.+.+.+++.+|..|-- + +.++...+..++.+--++.+.|=|=..
T Consensus 28 ~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 86 (267)
T cd07396 28 KLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLGNHDLY 86 (267)
T ss_pred HHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecCccccc
Confidence 34666777777777766655531 2 445555665555432378899999654
No 340
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=26.88 E-value=4.2e+02 Score=22.91 Aligned_cols=76 Identities=7% Similarity=0.013 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHH--hcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc--cCCeEE
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR--IYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS--NTGNST 113 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~--~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~--~~~vva 113 (171)
.+...++++.+++.|+.-.|+.+...+.....++... .|-..++.+--+.+ .+..++.+....+.+. -..++.
T Consensus 218 ~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~---~KP~Peifl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYR---GKPDPEMFIYAAQLLNFIPERCIV 294 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCC---CCCCHHHHHHHHHHcCCCcccEEE
Confidence 4688999999999999755554555555555444221 22122333222221 2233344444443333 245888
Q ss_pred Eec
Q psy4673 114 MNR 116 (171)
Q Consensus 114 IGD 116 (171)
|||
T Consensus 295 IGD 297 (381)
T PLN02575 295 FGN 297 (381)
T ss_pred EcC
Confidence 995
No 341
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=26.76 E-value=2.9e+02 Score=21.07 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhH
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~ 66 (171)
..+...++++.+++.|+. +.+++.....+
T Consensus 75 l~pG~~e~l~~l~~~g~~-~~IvS~~~~~~ 103 (219)
T PRK09552 75 IREGFHEFVQFVKENNIP-FYVVSGGMDFF 103 (219)
T ss_pred cCcCHHHHHHHHHHcCCe-EEEECCCcHHH
Confidence 456889999999999996 55556655543
No 342
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=26.74 E-value=1e+02 Score=24.65 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=46.3
Q ss_pred eccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC---CCCHHHHHHHHH
Q psy4673 28 VGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK---SWDEDYIDQLRD 104 (171)
Q Consensus 28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~---~~~~~~~~~l~~ 104 (171)
.|+|+|.. +....++...+.. ..+..++++.+++|.+.| ..|= .+... +..++..+++++
T Consensus 6 ~HsH~D~~-W~~t~~~~~~~~~--------------~~~~~~l~~l~~~~~~~f-~~~~-~~~~~~~~~~~p~~~~~~~~ 68 (275)
T PF01074_consen 6 PHSHWDRG-WLWTFEEYRRYLV--------------NILDSVLDLLEEDPDFRF-IDGQ-TAYLEDYLEDAPEEFKRIKK 68 (275)
T ss_dssp EEEB--SS-SSS-HHHHHHHHH--------------HHHHHHHHHHHH-TT--E-ECTB-CHHHHHHHHCSGHHHHHHHH
T ss_pred cccccchh-hcccHHHHHHHHH--------------HHHHHHHHHHHhCCcceE-eech-hHHHHHHHHhCCHHHHHHHH
Confidence 69999974 3345555522211 236777888888887433 2221 11111 113456777888
Q ss_pred HhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 105 LVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 105 ~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
++++.++.-|| =|.-.... -..-+.+.+||.+..+
T Consensus 69 lv~~Gri~~vgg~~~~~D~~-l~~~Eslirql~~G~~ 104 (275)
T PF01074_consen 69 LVKEGRIEIVGGWYVQPDEN-LPSGESLIRQLLYGHK 104 (275)
T ss_dssp HHHTTSEEESSSBSS-B-SS-SS-HHHHHHHHHHHHH
T ss_pred HHHhceeEEeCceeeecccc-CCCHHHHHHHHhhhHH
Confidence 88888877677 33221111 1123345666666654
No 343
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=26.55 E-value=1e+02 Score=23.02 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=9.5
Q ss_pred cCceEEEecCCC
Q psy4673 155 NRHLWVHKDSSM 166 (171)
Q Consensus 155 ~~p~iiH~fsg~ 166 (171)
+.|+.|||..|-
T Consensus 98 g~~V~VHC~aGi 109 (166)
T PTZ00242 98 PETIAVHCVAGL 109 (166)
T ss_pred CCeEEEECCCCC
Confidence 678889988873
No 344
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=26.14 E-value=59 Score=23.97 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=7.7
Q ss_pred hcCceEEEecCCC
Q psy4673 154 LNRHLWVHKDSSM 166 (171)
Q Consensus 154 ~~~p~iiH~fsg~ 166 (171)
...|+++||..|.
T Consensus 123 ~~~p~l~HC~aGK 135 (164)
T PF13350_consen 123 APGPVLFHCTAGK 135 (164)
T ss_dssp TT--EEEE-SSSS
T ss_pred CCCcEEEECCCCC
Confidence 3369999998884
No 345
>PRK13404 dihydropyrimidinase; Provisional
Probab=26.09 E-value=4.5e+02 Score=23.06 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=50.9
Q ss_pred ceEeeccCCCCCCCCCC-HHHHHHHHHhcCCCEEEEe------CCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCH
Q psy4673 24 VLIDVGANLTNRKFGRD-LESVVQRAKDSGVQKIIAI------GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDE 96 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d-~~~vl~~a~~~gv~~~i~v------~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~ 96 (171)
.++|...|........+ ...-+....+.|+..+-+. ..+.+.+.++++.++++.. -+.+|+....
T Consensus 119 ~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~----~V~~Hae~~~---- 190 (477)
T PRK13404 119 AVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDDLKLDDRQILDVLAVARRHGA----MVMVHAENHD---- 190 (477)
T ss_pred cEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEecCCCCCCCHHHHHHHHHHHHhcCC----EEEEEeCCHH----
Confidence 36777666533211111 2123455556676543321 2344567777777776653 2568886432
Q ss_pred HHHHHHHHHhccCCeEEEe-cCCCCCCcHHHHHHHHHHHHHHhhH
Q psy4673 97 DYIDQLRDLVSNTGNSTMN-RYNSSQWITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 97 ~~~~~l~~~l~~~~vvaIG-Dy~~~~~~~~~Q~~~F~~ql~lA~~ 140 (171)
.++.+.+.+...... + ..+....+.........+-++||++
T Consensus 191 -~i~~~~~~~~~~G~~--~~~~~~~~rp~~~E~~~v~~~~~la~~ 232 (477)
T PRK13404 191 -MIAWLTKRLLAAGLT--APKYHAISRPMLAEREATHRAIALAEL 232 (477)
T ss_pred -HHHHHHHHHHHCCCc--chhhccccCCHHHHHHHHHHHHHHHHH
Confidence 233232222222111 1 1222222334455667888999993
No 346
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=25.77 E-value=1.1e+02 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCC--cEEEEeeeC
Q psy4673 66 SKEALRLARIYPG--MVYSTAGIH 87 (171)
Q Consensus 66 ~~~~~~l~~~~~~--~v~~~~GiH 87 (171)
-..++++++++|+ .||.++|+=
T Consensus 113 p~dAl~iA~~nP~k~vVF~avGFE 136 (355)
T PF01924_consen 113 PLDALKIAKENPDKEVVFFAVGFE 136 (355)
T ss_dssp HHHHHHHHHH-TTSEEEEEEEE-H
T ss_pred HHHHHHHHHhCCCCceEEEEeCcc
Confidence 3456888899886 488899975
No 347
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.65 E-value=3.5e+02 Score=21.59 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCC--CE--EEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCC
Q psy4673 41 LESVVQRAKDSGV--QK--IIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAK 92 (171)
Q Consensus 41 ~~~vl~~a~~~gv--~~--~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~ 92 (171)
+...+++.++.|. +. .+.++|.++.....+.. - +. ..-+.+.|-+..
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~---v-D~-VLiMtV~PGfgG 155 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ---I-DL-IQILTLDPRTGT 155 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh---c-CE-EEEEEECCCCCC
Confidence 4455555555554 32 33444444444433322 1 11 233555665544
No 348
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=25.65 E-value=4.3e+02 Score=22.69 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=10.8
Q ss_pred eEEEecCCCccc
Q psy4673 158 LWVHKDSSMMKE 169 (171)
Q Consensus 158 ~iiH~fsg~~~e 169 (171)
+++|.-||.++|
T Consensus 260 LVLHGgSGi~~e 271 (357)
T TIGR01520 260 FVFHGGSGSTKQ 271 (357)
T ss_pred EEEeCCCCCCHH
Confidence 999999998865
No 349
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.39 E-value=97 Score=25.19 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=25.8
Q ss_pred CCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCC
Q psy4673 52 GVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEA 91 (171)
Q Consensus 52 gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~ 91 (171)
|..++|+.+|.|++..++.+.. |+..+.+=||=|.-.
T Consensus 187 g~~GvV~gAT~p~e~~~iR~~~---~~~~il~PGigaqG~ 223 (261)
T TIGR02127 187 SSVGAVVGATSPGDLLRLRIEM---PTAPFLVPGFGAQGA 223 (261)
T ss_pred CceEEEECCCCHHHHHHHHHhC---CCCeEEeCCcCCCCC
Confidence 4778899899999888877655 333455666667643
No 350
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=25.36 E-value=2.9e+02 Score=20.65 Aligned_cols=76 Identities=5% Similarity=0.045 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCC-hhhHHHHHHH---HHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHh---ccC
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSS-LKSSKEALRL---ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLV---SNT 109 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~-~~~~~~~~~l---~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l---~~~ 109 (171)
+.++..+++++.++. .. +.+++.. .......++- ..-+. .++ +.......+..+.-+....+.+ .-.
T Consensus 98 ~~~g~~~~L~~l~~~-~~-~~i~Sn~~~~~~~~~l~~~~l~~~fd-~i~---~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR02254 98 LLPGAFELMENLQQK-FR-LYIVTNGVRETQYKRLRKSGLFPFFD-DIF---VSEDAGIQKPDKEIFNYALERMPKFSKE 171 (224)
T ss_pred eCccHHHHHHHHHhc-Cc-EEEEeCCchHHHHHHHHHCCcHhhcC-EEE---EcCccCCCCCCHHHHHHHHHHhcCCCch
Confidence 346778889988887 64 4444443 4333333321 11122 233 2222222223333444433333 224
Q ss_pred CeEEEecCC
Q psy4673 110 GNSTMNRYN 118 (171)
Q Consensus 110 ~vvaIGDy~ 118 (171)
.++.|||-.
T Consensus 172 ~~v~igD~~ 180 (224)
T TIGR02254 172 EVLMIGDSL 180 (224)
T ss_pred heEEECCCc
Confidence 689999743
No 351
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.26 E-value=3e+02 Score=20.67 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPH 89 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~ 89 (171)
+.+..++.+.+.|+..+++.+...++....++..+++.- ...+++.|.
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ 114 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGA--KAGIVLNPA 114 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCC--cEEEEECCC
Confidence 456778888888888777666555566666666666642 334566554
No 352
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=25.18 E-value=2.6e+02 Score=21.11 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPG 78 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~ 78 (171)
++...+++.+.+.|++. +.+.. ++...+.+..+.+.+|+
T Consensus 16 ~~~~~~~~~l~~~G~~~-vev~~~~~~~~~~i~~l~~~~~~ 55 (190)
T cd00452 16 EDALALAEALIEGGIRA-IEITLRTPGALEAIRALRKEFPE 55 (190)
T ss_pred HHHHHHHHHHHHCCCCE-EEEeCCChhHHHHHHHHHHHCCC
Confidence 35567778888899975 55544 44444455567777885
No 353
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.02 E-value=2.9e+02 Score=22.69 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCccceEeeccCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHH
Q psy4673 20 FDNYVLIDVGANLTNRKFGRDLESVVQRAKDS-GVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDY 98 (171)
Q Consensus 20 ~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~-gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~ 98 (171)
.+.+++.|.|..+. ..+.+-+++++.. |-...|-+++ .+.+++.+..+.-++ |..+ ..+..+.
T Consensus 158 ~d~vlikdnHi~~~-----g~~~~~v~~aR~~~~~~~~Igvsv--~tleea~~A~~~gaD--yI~l-------D~~~~e~ 221 (277)
T PRK08072 158 YDGVMIKDNHIAFC-----GSITKAVTSVREKLGHMVKIEVET--ETEEQVREAVAAGAD--IIMF-------DNRTPDE 221 (277)
T ss_pred CceEEEchhHHHhh-----CCHHHHHHHHHHhCCCCCEEEEEe--CCHHHHHHHHHcCCC--EEEE-------CCCCHHH
Confidence 35567889886543 2456666666654 2223344444 344444444333344 2233 1344556
Q ss_pred HHHHHHHhccC-CeEEEe
Q psy4673 99 IDQLRDLVSNT-GNSTMN 115 (171)
Q Consensus 99 ~~~l~~~l~~~-~vvaIG 115 (171)
+.++.+.+..+ .++|||
T Consensus 222 l~~~~~~~~~~i~i~AiG 239 (277)
T PRK08072 222 IREFVKLVPSAIVTEASG 239 (277)
T ss_pred HHHHHHhcCCCceEEEEC
Confidence 66666655432 244898
No 354
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.94 E-value=3.2e+02 Score=21.00 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=18.9
Q ss_pred HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEE
Q psy4673 46 QRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYST 83 (171)
Q Consensus 46 ~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~ 83 (171)
+++...|..+++.-+...++...+.++.+.++..+..+
T Consensus 90 ~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vs 127 (233)
T PRK00748 90 EALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVG 127 (233)
T ss_pred HHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceee
Confidence 44555676655443333344444555666665433333
No 355
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=24.93 E-value=2.9e+02 Score=20.49 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHH---HHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhc-c-CCeE
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRL---ARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVS-N-TGNS 112 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l---~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~-~-~~vv 112 (171)
.++..++++++++.|+.- .+++.........++. ..-+. .++.+-.+.. .+..++.+..+.+.+. . .+++
T Consensus 107 ~~g~~~~l~~L~~~g~~~-~i~Sn~~~~~~~~l~~~~l~~~fd-~i~~s~~~~~---~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 107 YPDAIKLLKDLRERGLIL-GVISNFDSRLRGLLEALGLLEYFD-FVVTSYEVGA---EKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred CcCHHHHHHHHHHCCCEE-EEEeCCchhHHHHHHHCCcHHhcc-eEEeecccCC---CCCCHHHHHHHHHHcCCChhHEE
Confidence 468899999999999853 3334433333333221 11122 2443332221 1223333443333332 2 4689
Q ss_pred EEecCC
Q psy4673 113 TMNRYN 118 (171)
Q Consensus 113 aIGDy~ 118 (171)
.|||-.
T Consensus 182 ~IgD~~ 187 (203)
T TIGR02252 182 HIGDSL 187 (203)
T ss_pred EECCCc
Confidence 999753
No 356
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=24.87 E-value=3.7e+02 Score=21.58 Aligned_cols=71 Identities=7% Similarity=0.022 Sum_probs=39.5
Q ss_pred hhhHHHHHH-HHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe---cCCC---CCCcHHHHHHHHHHHH
Q psy4673 63 LKSSKEALR-LARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN---RYNS---SQWITEIKQTLFTTFV 135 (171)
Q Consensus 63 ~~~~~~~~~-l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG---Dy~~---~~~~~~~Q~~~F~~ql 135 (171)
+++.+.+++ +.+.-|+.++.++|. |- .|.++....+.+..+-+++|| |++- ...++=.|+-=++---
T Consensus 143 ~~e~~~i~~~I~~s~~dil~VglG~-Pk-----QE~~~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWly 216 (243)
T PRK03692 143 PEQRQALFERIHASGAKIVTVAMGS-PK-----QEIFMRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLY 216 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCC-cH-----HHHHHHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHH
Confidence 455554444 555667878888874 32 134566666655444466888 8864 2445555544333334
Q ss_pred HHhh
Q psy4673 136 DITA 139 (171)
Q Consensus 136 ~lA~ 139 (171)
+|++
T Consensus 217 Rl~~ 220 (243)
T PRK03692 217 RLLS 220 (243)
T ss_pred HhHh
Confidence 4444
No 357
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.70 E-value=80 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCCc
Q psy4673 123 ITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMM 167 (171)
Q Consensus 123 ~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~~ 167 (171)
..+.+.+.|.+-|+-|. .|+..||+||..
T Consensus 71 iT~~dV~~f~~Al~eae----------------gPVlayCrsGtR 99 (130)
T COG3453 71 ITEADVEAFQRALDEAE----------------GPVLAYCRSGTR 99 (130)
T ss_pred CCHHHHHHHHHHHHHhC----------------CCEEeeecCCch
Confidence 34567778877666665 899999999864
No 358
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=24.61 E-value=2.5e+02 Score=19.57 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCEEEEeCCC-----hhhHHHHHHHHHhcCC---cEEEEeeeC
Q psy4673 44 VVQRAKDSGVQKIIAIGSS-----LKSSKEALRLARIYPG---MVYSTAGIH 87 (171)
Q Consensus 44 vl~~a~~~gv~~~i~v~~~-----~~~~~~~~~l~~~~~~---~v~~~~GiH 87 (171)
+++.+...+++.++..|-- .+++....++.++... .++...|=|
T Consensus 27 ~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNH 78 (144)
T cd07400 27 LLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNH 78 (144)
T ss_pred HHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCC
Confidence 5666777788766665531 2345555555444322 245554443
No 359
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=24.58 E-value=4.3e+02 Score=22.25 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChh-hHHHHHHHHHhcCCc-EEEEeeeCCCCCCC--CC-----HHHHHHHHHHhccCC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLK-SSKEALRLARIYPGM-VYSTAGIHPHEAKS--WD-----EDYIDQLRDLVSNTG 110 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~-~~~~~~~l~~~~~~~-v~~~~GiHP~~~~~--~~-----~~~~~~l~~~l~~~~ 110 (171)
....++++|++.|+-.| .+..... ..+-..+|.++|.-. +... |..... .. ...-..|.+.++...
T Consensus 42 ~v~rlL~~Ar~~GiV~I-~i~~~~~~~~~Le~~L~~~fgL~~a~VV----p~~~~~~~~~~~~lg~aaA~~l~~~l~~gd 116 (321)
T COG2390 42 TVSRLLAKAREEGIVKI-SINSPVEGCLELEQQLKERFGLKEAIVV----PSDSDADDSILRRLGRAAAQYLESLLKPGD 116 (321)
T ss_pred HHHHHHHHHHHCCeEEE-EeCCCCcchHHHHHHHHHhcCCCeEEEE----cCCCCCchHHHHHHHHHHHHHHHHhCCCCC
Confidence 45678889999997553 3333333 333344577777521 2222 332221 11 123345666666677
Q ss_pred eEEEe
Q psy4673 111 NSTMN 115 (171)
Q Consensus 111 vvaIG 115 (171)
++|||
T Consensus 117 vigV~ 121 (321)
T COG2390 117 VIGVG 121 (321)
T ss_pred EEEEe
Confidence 88888
No 360
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.49 E-value=2e+02 Score=22.83 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=24.9
Q ss_pred HHHHhcCCCEEEEeCCChhhHHHHHHHHHhc-CCcEEEEeee
Q psy4673 46 QRAKDSGVQKIIAIGSSLKSSKEALRLARIY-PGMVYSTAGI 86 (171)
Q Consensus 46 ~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~-~~~v~~~~Gi 86 (171)
+++.+.|+.++++-+...++.+.+.+++++| ++.+..++-+
T Consensus 89 ~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~ 130 (232)
T PRK13586 89 KRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDY 130 (232)
T ss_pred HHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 5555678887665444455666666677777 3445555554
No 361
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=24.45 E-value=3e+02 Score=20.40 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKE 68 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~ 68 (171)
.++..++++++++.|+.-.++.+.+......
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~ 124 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILSNGSPAMLKS 124 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Confidence 3688899999999998644443344443333
No 362
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=24.24 E-value=3.4e+02 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChh
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLK 64 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~ 64 (171)
..++..++++.+++.|+. +.+++....
T Consensus 96 ~~pg~~~~L~~L~~~g~~-l~i~Tn~~~ 122 (229)
T PRK13226 96 LFDGVEGMLQRLECAGCV-WGIVTNKPE 122 (229)
T ss_pred eCCCHHHHHHHHHHCCCe-EEEECCCCH
Confidence 346888999999999985 344444433
No 363
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.08 E-value=3.7e+02 Score=21.32 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhcCCCEE-EEeCC---------ChhhHHHHHHHHHhcC
Q psy4673 39 RDLESVVQRAKDSGVQKI-IAIGS---------SLKSSKEALRLARIYP 77 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~-i~v~~---------~~~~~~~~~~l~~~~~ 77 (171)
.++++.++.+++.|++.+ +.+.. +.+....+.+++++++
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 58 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGP 58 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcC
Confidence 578889999999998753 12211 2355666677777773
No 364
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=23.83 E-value=2.5e+02 Score=22.12 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCcEEEEee-eCCCCCCCC-CHHHHHHHH---HHhccCCeEEEe
Q psy4673 65 SSKEALRLARIYPGMVYSTAG-IHPHEAKSW-DEDYIDQLR---DLVSNTGNSTMN 115 (171)
Q Consensus 65 ~~~~~~~l~~~~~~~v~~~~G-iHP~~~~~~-~~~~~~~l~---~~l~~~~vvaIG 115 (171)
+.+++.+..+.-++ |.++| |.|...+.. ...-++.+. +... -.+||||
T Consensus 113 ~~eea~~A~~~g~D--Yv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~-iP~vAIG 165 (211)
T COG0352 113 DLEEALEAEELGAD--YVGLGPIFPTSTKPDAPPLGLEGLREIRELVN-IPVVAIG 165 (211)
T ss_pred CHHHHHHHHhcCCC--EEEECCcCCCCCCCCCCccCHHHHHHHHHhCC-CCEEEEc
Confidence 44454444333365 44555 344433321 222333333 3322 3488999
No 365
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.34 E-value=1.9e+02 Score=20.15 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhc
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIY 76 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~ 76 (171)
..++++++.+.|+..++..+. ...+++.++++++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG--AESEELIEAAREA 101 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHc
Confidence 344555555555554444333 3334444444444
No 366
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=23.25 E-value=4.7e+02 Score=22.28 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=43.4
Q ss_pred eEeeccCCCCCCCCCCHHHHHHHHHhcCCCE-EEEeCCC----hhhHHHHHHHHHhcC--CcEEEEeeeCCCCCCCCCHH
Q psy4673 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQK-IIAIGSS----LKSSKEALRLARIYP--GMVYSTAGIHPHEAKSWDED 97 (171)
Q Consensus 25 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~-~i~v~~~----~~~~~~~~~l~~~~~--~~v~~~~GiHP~~~~~~~~~ 97 (171)
.+++||.-+........++++..+...|..- +.-+++. +..+.+++++.++.+ + +-.+...-|+....
T Consensus 214 ~v~~H~e~~~~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G-~~v~~e~~p~~~~~---- 288 (415)
T cd01297 214 VYQTHVRYEGDSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEG-LQVTADVYPYGAGS---- 288 (415)
T ss_pred EEEEEECcccccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhC-CcEEEEeCCCCCCc----
Confidence 5788887654322334666777777777653 3233322 233444444433221 1 12244555543321
Q ss_pred HHHHHHHHhccCCeEEEe-cCC
Q psy4673 98 YIDQLRDLVSNTGNSTMN-RYN 118 (171)
Q Consensus 98 ~~~~l~~~l~~~~vvaIG-Dy~ 118 (171)
.+.+.+++.. .+++|| |-.
T Consensus 289 -~~~~~~l~~~-~~~~i~SDh~ 308 (415)
T cd01297 289 -EDDVRRIMAH-PVVMGGSDGG 308 (415)
T ss_pred -HHHHHHHHcC-CCceeeeCCC
Confidence 2334444444 577899 753
No 367
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=1.3e+02 Score=24.58 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.5
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeC
Q psy4673 33 TNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIH 87 (171)
Q Consensus 33 ~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiH 87 (171)
|+..+.......|-.+.+.||-.--++=++-..++.++++++++|. ..+|.|
T Consensus 10 DDFGLs~G~nyGIiea~~~GvvtsTt~M~n~pa~~hAv~l~k~~p~---l~IGlH 61 (257)
T COG3394 10 DDFGLSKGVNYGIIEAHRTGVVTSTTLMVNMPAIDHAVALSKKLPA---LKIGLH 61 (257)
T ss_pred cccCcCcccchhHHHHHhCCceeceeeecCCcccHHHHHHHhhCCC---cceeee
Confidence 3433444555556666777864322223355788999999999997 368888
No 368
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=22.94 E-value=3.5e+02 Score=20.71 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC-CCCCCCCHHHHHHHHHHhcc-C-CeEEE
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP-HEAKSWDEDYIDQLRDLVSN-T-GNSTM 114 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP-~~~~~~~~~~~~~l~~~l~~-~-~vvaI 114 (171)
.+...+++...+..|+.-.|+.+......+.+++-..-.+ .+-..+| .= ....+..+..+..+.+.+.- + +++.|
T Consensus 91 ~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g-~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~V 168 (220)
T COG0546 91 FPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVG-GDDVPPPKPDPEPLLLLLEKLGLDPEEALMV 168 (220)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEc-CCCCCCCCcCHHHHHHHHHHhCCChhheEEE
Confidence 4678899999999998654443434444444444211111 1223344 11 11112333444444443332 3 68899
Q ss_pred ecC
Q psy4673 115 NRY 117 (171)
Q Consensus 115 GDy 117 (171)
||.
T Consensus 169 GDs 171 (220)
T COG0546 169 GDS 171 (220)
T ss_pred CCC
Confidence 964
No 369
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=22.83 E-value=1e+02 Score=23.82 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSS 62 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~ 62 (171)
+..++..+-..+.++..+|..+..
T Consensus 52 ~t~~~FW~mv~~~~~~~IV~l~~~ 75 (231)
T cd00047 52 NTVEDFWRMVWEQKVPVIVMLTEL 75 (231)
T ss_pred hhHHHHHHHHHhcCCCEEEEcccc
Confidence 466777777777888765555443
No 370
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=22.77 E-value=2e+02 Score=23.59 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCEEEEeCCChhh----HHHHHHHHHhc-CCcEEEEeee
Q psy4673 43 SVVQRAKDSGVQKIIAIGSSLKS----SKEALRLARIY-PGMVYSTAGI 86 (171)
Q Consensus 43 ~vl~~a~~~gv~~~i~v~~~~~~----~~~~~~l~~~~-~~~v~~~~Gi 86 (171)
+-++++.+.|++++++-+.-.++ .+.+.+++++| |+.|..++-+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 44566677788876653333344 55566677777 5444444443
No 371
>PRK09358 adenosine deaminase; Provisional
Probab=22.64 E-value=91 Score=25.84 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=20.1
Q ss_pred ccceEeeccCCCCCCCCCCHHHHHHHHHhcCCC
Q psy4673 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQ 54 (171)
Q Consensus 22 ~~~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~ 54 (171)
.++=+|.||||+-. -.++.+++-+++.|+.
T Consensus 9 ~lpK~eLH~Hl~Gs---~~~~~l~~l~~~~~~~ 38 (340)
T PRK09358 9 SLPKAELHLHLDGS---LRPETILELARRNGIA 38 (340)
T ss_pred cCCceeEEecccCC---CCHHHHHHHHHHcCCC
Confidence 34568999999853 2456666666666654
No 372
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.62 E-value=1.2e+02 Score=22.96 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=26.7
Q ss_pred CHHHHHHHHHh---cCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 40 DLESVVQRAKD---SGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 40 d~~~vl~~a~~---~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
|..-++..+.- ..++.++.++.| .+|..++.-.++..-. ...+|..|
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD-~DF~~Lv~~lre~G~~-V~v~g~~~ 139 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRD-ADFLPVINKAKENGKE-TIVIGAEP 139 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEecc-HhHHHHHHHHHHCCCE-EEEEeCCC
Confidence 55555554433 467766665555 5677776666666433 34577643
No 373
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.49 E-value=2.6e+02 Score=22.65 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred HhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCC-eEEEecCCCCCCcHHHH
Q psy4673 49 KDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTG-NSTMNRYNSSQWITEIK 127 (171)
Q Consensus 49 ~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~-vvaIGDy~~~~~~~~~Q 127 (171)
+..|+..++..|..+..++..++.+..|=+.+..+.|.+..... +.+.+..+++.+.. .+.-|.... ....+
T Consensus 10 R~~GlT~v~Dkglg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~----~~l~eki~l~~~~gV~v~~GGtl~---E~a~~ 82 (244)
T PF02679_consen 10 RSRGLTMVIDKGLGLRYLEDLLESAGDYIDFLKFGWGTSALYPE----EILKEKIDLAHSHGVYVYPGGTLF---EVAYQ 82 (244)
T ss_dssp -SSS-EEEEESS--HHHHHHHHHHHGGG-SEEEE-TTGGGGSTC----HHHHHHHHHHHCTT-EEEE-HHHH---HHHHH
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHhhhhccEEEecCceeeecCH----HHHHHHHHHHHHcCCeEeCCcHHH---HHHHh
Confidence 35688888889989999999888888886667777776655432 35555555554433 345562111 12233
Q ss_pred HHHHHHHHHHhhH
Q psy4673 128 QTLFTTFVDITAL 140 (171)
Q Consensus 128 ~~~F~~ql~lA~~ 140 (171)
+..|...++.|++
T Consensus 83 q~~~~~yl~~~k~ 95 (244)
T PF02679_consen 83 QGKFDEYLEECKE 95 (244)
T ss_dssp TT-HHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 4456667777775
No 374
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.42 E-value=3.2e+02 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=14.8
Q ss_pred eccCCCCCCCCCCHHHHHHHHHhcCCCEE
Q psy4673 28 VGANLTNRKFGRDLESVVQRAKDSGVQKI 56 (171)
Q Consensus 28 tH~HL~~~~~~~d~~~vl~~a~~~gv~~~ 56 (171)
+.||.... ..++..++++.+.|++.+
T Consensus 2 ~g~~~~~~---~~~~~~~~~~~~~G~~~v 27 (273)
T smart00518 2 IGAHVSAA---GGLYKAFIEAVDIGARSF 27 (273)
T ss_pred eeEEEccc---CcHhHHHHHHHHcCCCEE
Confidence 34555432 345566677777777654
No 375
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.31 E-value=2.1e+02 Score=19.19 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc-CCeEEEe
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN-TGNSTMN 115 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~-~~vvaIG 115 (171)
.+.+++++.- +++.+++.+.+....+-+....+.-. .|+ -=-|-. .+.++.++|.+++++ ...+.||
T Consensus 52 ~~~~~ll~~~---~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~---~EKP~~---~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 52 TDLEELLADE---DVDAVIIATPPSSHAEIAKKALEAGK-HVL---VEKPLA---LTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SSHHHHHHHT---TESEEEEESSGGGHHHHHHHHHHTTS-EEE---EESSSS---SSHHHHHHHHHHHHHHTSCEEEE
T ss_pred hHHHHHHHhh---cCCEEEEecCCcchHHHHHHHHHcCC-EEE---EEcCCc---CCHHHHHHHHHHHHHhCCEEEEe
Confidence 4666666542 56644443334344444444444322 232 223432 234566666666654 4455665
No 376
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=22.29 E-value=2.6e+02 Score=21.54 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcC-CcEEEE
Q psy4673 45 VQRAKDSGVQKIIAIGSSLKSSKEALRLARIYP-GMVYST 83 (171)
Q Consensus 45 l~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~-~~v~~~ 83 (171)
++++.+.|+.++++.+...++.+...++++.+. ..+.++
T Consensus 87 ~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~s 126 (230)
T TIGR00007 87 VEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVS 126 (230)
T ss_pred HHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEE
Confidence 466777888876654455566677777777774 345555
No 377
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=22.18 E-value=3.3e+02 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhHHH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSSKE 68 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~ 68 (171)
.+...++++..++.|.. +++++.+++.+-+
T Consensus 89 ~~~~~~~l~~l~~~g~~-v~ivS~s~~~~v~ 118 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHT-IVLVSASLTILVK 118 (202)
T ss_pred cHHHHHHHHHHHHCCCE-EEEEeCCcHHHHH
Confidence 34667788888888885 5666766665443
No 378
>PLN02765 pyruvate kinase
Probab=22.15 E-value=6e+02 Score=23.08 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCC--ChhhHHHHHHHHHhcCCcEEEEeeeCCC-CCCCCCHHHHHHHHHHhccCC--eEE
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGS--SLKSSKEALRLARIYPGMVYSTAGIHPH-EAKSWDEDYIDQLRDLVSNTG--NST 113 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~--~~~~~~~~~~l~~~~~~~v~~~~GiHP~-~~~~~~~~~~~~l~~~l~~~~--vva 113 (171)
.|.+.+...+-+.||+. |..+. +.++...+.++..+.... ++. -+.=.+.+.++.|.+.+...- +||
T Consensus 207 kD~~di~~f~~~~~vD~-ia~SFVr~a~DI~~~r~~l~~~g~~-------~~~IiaKIE~~~av~nl~eIi~~sDgIMVA 278 (526)
T PLN02765 207 KDKEVISTWGVPNKIDF-LSLSYTRHAEDVREAREFLSSLGLS-------QTQIFAKIENVEGLTHFDEILQEADGIILS 278 (526)
T ss_pred hHHHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHHHhcCCC-------CCcEEEEECCHHHHHHHHHHHHhcCEEEEe
Confidence 46666656677889985 44443 678888888877654210 111 122134467778888776533 556
Q ss_pred EecCCCCC---CcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEE
Q psy4673 114 MNRYNSSQ---WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWV 160 (171)
Q Consensus 114 IGDy~~~~---~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~ii 160 (171)
=||-.-+- .-...|+++ +..|. +.++|+|.
T Consensus 279 RGDLGvEip~e~vp~~QK~i----I~~c~-------------~~gKPVI~ 311 (526)
T PLN02765 279 RGNLGIDLPPEKVFLFQKAA----LYKCN-------------MAGKPAVV 311 (526)
T ss_pred cCccccccCHHHhHHHHHHH----HHHHH-------------HhCCCeEE
Confidence 66766532 123557544 57788 88899885
No 379
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=22.12 E-value=3.7e+02 Score=20.87 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=33.9
Q ss_pred ceEeeccCCCCCCCCC--CHHHHHHHHHhcCCCEEEEeCCChh---hHHHHH-HHHHhcCCcEEEEeeeCCCC
Q psy4673 24 VLIDVGANLTNRKFGR--DLESVVQRAKDSGVQKIIAIGSSLK---SSKEAL-RLARIYPGMVYSTAGIHPHE 90 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~--d~~~vl~~a~~~gv~~~i~v~~~~~---~~~~~~-~l~~~~~~~v~~~~GiHP~~ 90 (171)
.+.|.|. +...+.. .++.+++.+.+.+++.+++.|--.. .....+ .+.+..+.-++...|-|=.+
T Consensus 4 ~iSDlH~--~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 4 FSSDLHI--DLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDML 74 (239)
T ss_pred EEEeecC--CCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCC
Confidence 4667774 4322221 2456777777778876555443221 122222 23322211278899999654
No 380
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=22.03 E-value=3.2e+02 Score=25.73 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~ 66 (171)
.++..+.+++++++||+-+++.|.++...
T Consensus 444 R~~a~~aI~~l~~aGI~v~miTGD~~~tA 472 (755)
T TIGR01647 444 RHDTKETIERARHLGVEVKMVTGDHLAIA 472 (755)
T ss_pred hhhHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 46788999999999997555555555443
No 381
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=21.95 E-value=2.9e+02 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=18.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHH
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLA 73 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~ 73 (171)
.-.++++++.+.|+ +|.++- +.+.+..+++++
T Consensus 155 ~G~~vv~~mn~lGm--iiDvSH~s~~~~~dv~~~s 187 (309)
T cd01301 155 FGKELVREMNRLGI--IIDLSHLSERTFWDVLDIS 187 (309)
T ss_pred HHHHHHHHHHHcCC--EEEcCCCCHHHHHHHHHhc
Confidence 34567777777776 566553 445555555554
No 382
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=21.82 E-value=4.2e+02 Score=21.20 Aligned_cols=18 Identities=0% Similarity=-0.219 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHhhH
Q psy4673 123 ITEIKQTLFTTFVDITAL 140 (171)
Q Consensus 123 ~~~~Q~~~F~~ql~lA~~ 140 (171)
....|.++++.+|+-|++
T Consensus 194 ~~~~Ql~WL~~~L~~a~~ 211 (296)
T cd00842 194 DPAGQLQWLEDELQEAEQ 211 (296)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 457899999999999973
No 383
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=21.81 E-value=85 Score=22.21 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=20.8
Q ss_pred EeeeCCCC-CCCCCHHHHHHHHHHhccC
Q psy4673 83 TAGIHPHE-AKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 83 ~~GiHP~~-~~~~~~~~~~~l~~~l~~~ 109 (171)
.+|+||+. +.+.++++++.|..+++++
T Consensus 34 ~lgi~~~~~~~~L~~~qi~~l~~~l~~~ 61 (113)
T TIGR03631 34 KAGIDPDKRVKDLTEEELNAIREEIEAK 61 (113)
T ss_pred HhCcCcccccccCCHHHHHHHHHHHHhc
Confidence 37899975 4567888999999988654
No 384
>KOG1579|consensus
Probab=21.78 E-value=4.9e+02 Score=21.97 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhc-CC-cEEEEeeeCCCCCCCCCHHHHHHHHHHhcc-CCeEEEe
Q psy4673 44 VVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIY-PG-MVYSTAGIHPHEAKSWDEDYIDQLRDLVSN-TGNSTMN 115 (171)
Q Consensus 44 vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~-~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~-~~vvaIG 115 (171)
.++...++||+.++.=+. +..+.+.++++.+.. |. .+|.++-+++.-.. ..-+..+.+...+.+ .++.+||
T Consensus 153 qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l-~~G~t~e~~~~~~~~~~~~~~IG 227 (317)
T KOG1579|consen 153 QLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRL-RSGETGEEAAQLLKDGINLLGIG 227 (317)
T ss_pred HHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcc-cCCCcHHHHHHHhccCCceEEEE
Confidence 345567788985443222 456677777777664 54 37889999995332 222345555555544 3589999
No 385
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=21.54 E-value=2.6e+02 Score=22.30 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=23.2
Q ss_pred HHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeee
Q psy4673 46 QRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGI 86 (171)
Q Consensus 46 ~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~Gi 86 (171)
+++.+.|+.+++.-+...++.....++++.|++.+..++-+
T Consensus 90 ~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~ 130 (243)
T TIGR01919 90 RAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDV 130 (243)
T ss_pred HHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEE
Confidence 44555677775553334555555556667776555444444
No 386
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=21.49 E-value=4.2e+02 Score=21.78 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCChhhH
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~~~~~~~ 66 (171)
.+..++++..++.|+.-.|+...+.+..
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a 61 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDA 61 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHH
Confidence 3578899999999985444433333333
No 387
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=21.43 E-value=1.3e+02 Score=20.82 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCCC
Q psy4673 127 KQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSM 166 (171)
Q Consensus 127 Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg~ 166 (171)
+..-+...++-|. ..+.++.|||..|-
T Consensus 58 ~~~~~~~~i~~~~-------------~~~~~VlVHC~~G~ 84 (133)
T PF00782_consen 58 HLDQAVEFIENAI-------------SEGGKVLVHCKAGL 84 (133)
T ss_dssp GHHHHHHHHHHHH-------------HTTSEEEEEESSSS
T ss_pred HHHHHHHhhhhhh-------------cccceeEEEeCCCc
Confidence 3344555666666 66777888887773
No 388
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=21.27 E-value=3.5e+02 Score=20.99 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc-CCeEEEe
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN-TGNSTMN 115 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~-~~vvaIG 115 (171)
...+.+.|++.|+.++++.++.++...+ . ..|++...+=||-|..... +......+++.+.. ..++.||
T Consensus 131 ~~~~~~~a~~~g~~G~V~~~~~~~~i~~---~--~~~~~~~ltPGI~~~~~~~-dq~r~~~~~~a~~~g~~~ivvG 200 (216)
T cd04725 131 VERLAKLAREAGVDGVVCGATEPEALRR---A--LGPDFLILTPGIGAQGSGD-DQKRGGTPEDAIRAGADYIVVG 200 (216)
T ss_pred HHHHHHHHHHHCCCEEEECCcchHHHHH---h--hCCCCeEEcCCcCCCCCcc-ccccccCHHHHHHcCCcEEEEC
Confidence 3455677888898888887777766522 1 2344556678888875443 32223334444433 3466777
No 389
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=21.18 E-value=1.4e+02 Score=24.13 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEEecCC
Q psy4673 125 EIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165 (171)
Q Consensus 125 ~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH~fsg 165 (171)
..+.+-|...++-+. +.+.++.|||..|
T Consensus 153 ~~~i~~~l~~i~~~l-------------~~g~~VaVHC~AG 180 (241)
T PTZ00393 153 VDIVSNWLTIVNNVI-------------KNNRAVAVHCVAG 180 (241)
T ss_pred HHHHHHHHHHHHHHH-------------hcCCeEEEECCCC
Confidence 445555655555544 5566777777766
No 390
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=21.11 E-value=4.6e+02 Score=21.75 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHH----HHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc---CCeEE
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSK----EALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN---TGNST 113 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~----~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~---~~vva 113 (171)
++++-+.++..|.+++++++. ...++ ++.+..+++.-.+| -|+-|. .+.+.++++.+.+.. .-++|
T Consensus 11 l~~l~~~l~~~g~~~~livt~-~~~~~~~~~~v~~~l~~~~~~~~--~~~~~~----p~~~~v~~~~~~~~~~~~d~IIa 83 (337)
T cd08177 11 LAALAAELERLGASRALVLTT-PSLATKLAERVASALGDRVAGTF--DGAVMH----TPVEVTEAAVAAAREAGADGIVA 83 (337)
T ss_pred HHHHHHHHHHcCCCeEEEEcC-hHHHHHHHHHHHHHhccCCcEEe--CCCCCC----CCHHHHHHHHHHHHhcCCCEEEE
Confidence 455666677778777666653 33333 33333333321122 233332 223455555555542 34889
Q ss_pred Ee
Q psy4673 114 MN 115 (171)
Q Consensus 114 IG 115 (171)
||
T Consensus 84 iG 85 (337)
T cd08177 84 IG 85 (337)
T ss_pred eC
Confidence 99
No 391
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=21.04 E-value=2e+02 Score=27.69 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCChhhH
Q psy4673 38 GRDLESVVQRAKDSGVQKIIAIGSSLKSS 66 (171)
Q Consensus 38 ~~d~~~vl~~a~~~gv~~~i~v~~~~~~~ 66 (171)
.++..+.+++++++||+-+++.|.++...
T Consensus 552 R~~a~~aI~~l~~aGI~v~miTGD~~~tA 580 (903)
T PRK15122 552 KESAAPAIAALRENGVAVKVLTGDNPIVT 580 (903)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 45788999999999997555555555443
No 392
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=20.69 E-value=3.4e+02 Score=22.64 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHH
Q psy4673 41 LESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLAR 74 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~ 74 (171)
=.++++++.+.|+ +|.++- +.+.+..++++++
T Consensus 162 G~~vV~~mn~lGm--~vDvSH~s~~t~~Dv~~~s~ 194 (320)
T PF01244_consen 162 GREVVREMNRLGM--LVDVSHLSEKTFWDVLEISK 194 (320)
T ss_dssp HHHHHHHHHHHT---EEE-TTB-HHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCC--eeeeccCCHHHHHHHHhhcC
Confidence 4678888888886 676663 5556666666644
No 393
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=20.67 E-value=1.3e+02 Score=23.83 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=10.2
Q ss_pred cCceEEEecCCC
Q psy4673 155 NRHLWVHKDSSM 166 (171)
Q Consensus 155 ~~p~iiH~fsg~ 166 (171)
..|++|||..|.
T Consensus 193 ~~pivVHC~~G~ 204 (258)
T smart00194 193 TGPIVVHCSAGV 204 (258)
T ss_pred CCCEEEEeCCCC
Confidence 579999999884
No 394
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.64 E-value=5.4e+02 Score=22.01 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCC-h---hhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhcc---CCeE
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSS-L---KSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSN---TGNS 112 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~-~---~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~---~~vv 112 (171)
-++++-+.++..|.+++++++.. . .-++++.+..++..-.+...-|+-| +.+.+.+++..+++++ +-++
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~----~P~~~~v~~~~~~~r~~~~D~Ii 111 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVG----EPCITDVCAAVAQLRESGCDGVI 111 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCC----CcCHHHHHHHHHHHHhcCcCEEE
Confidence 45666677777788887777642 2 2245566555543311111123433 2333455555555543 4588
Q ss_pred EEe
Q psy4673 113 TMN 115 (171)
Q Consensus 113 aIG 115 (171)
|||
T Consensus 112 avG 114 (395)
T PRK15454 112 AFG 114 (395)
T ss_pred EeC
Confidence 999
No 395
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=20.53 E-value=3.3e+02 Score=21.52 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=33.8
Q ss_pred ceEeeccCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC------hhhHHHHHHHHHhcCCcEEEEeeeCC
Q psy4673 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSS------LKSSKEALRLARIYPGMVYSTAGIHP 88 (171)
Q Consensus 24 ~~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~v~~~------~~~~~~~~~l~~~~~~~v~~~~GiHP 88 (171)
-+-|+|..+ ..++.+++.+++.+++.+|+.|-- ++.....++...+.+..+++..|=|=
T Consensus 9 ~iSDiHgn~------~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD 73 (224)
T cd07388 9 ATSNPKGDL------EALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQD 73 (224)
T ss_pred EEEecCCCH------HHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 477999543 246778887877889876665532 23344444433333212566677553
No 396
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=20.28 E-value=3.6e+02 Score=21.81 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=52.5
Q ss_pred CCCCCcccccCCCCCCccceEeeccCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCChhhHHHHHHHHHhcCC------
Q psy4673 6 SSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAK-DSGVQKIIAIGSSLKSSKEALRLARIYPG------ 78 (171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~iDtH~HL~~~~~~~d~~~vl~~a~-~~gv~~~i~v~~~~~~~~~~~~l~~~~~~------ 78 (171)
|..+|.+...--+..++.-+||.-.|-.-..-....-.++++.. ...+..+|.+..+|.-+...-+|.+.+|+
T Consensus 23 S~EGR~I~~l~i~~~Kp~I~I~gGvHarEwig~~~al~fi~~L~~~~~~n~~I~P~vNPDGYe~~~~L~r~nP~~~hHaa 102 (240)
T cd06232 23 SRQGRPVTGRYVAGLDHPVVISAGQHANETSGVVGALRAAEALAARPGAHFALIPLENPDGYALHERLRAEHPRHMHHAA 102 (240)
T ss_pred ccCCCeeeEEEecCCCcEEEEeCCcCCCcchhHHHHHHHHHHHhccCCceEEEEEeeCCcHHHhhchhhccCcccccchh
Confidence 33444443221145677779999999764321112222222221 33567799999999999888888888886
Q ss_pred cEEEEeeeCCCC
Q psy4673 79 MVYSTAGIHPHE 90 (171)
Q Consensus 79 ~v~~~~GiHP~~ 90 (171)
+ |.|+|.-+.+
T Consensus 103 R-~~A~g~D~~f 113 (240)
T cd06232 103 R-YTALGDDLEY 113 (240)
T ss_pred h-hcccCCCccc
Confidence 4 6788877763
No 397
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.26 E-value=6.3e+02 Score=22.57 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeCC-ChhhHHHHHHHHHhcCCcEEEEeeeCCCCCCCCCHHHHHHHHHHhccCCeEEEe--c
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGS-SLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMN--R 116 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~-~~~~~~~~~~l~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~vvaIG--D 116 (171)
|.+. ++.+.+.||+.+-...+ ++++...+.++.++....+...+=| .+.+.++.|++.+..--.+-|| |
T Consensus 176 D~~d-i~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakI-------Et~~av~nldeI~~~~DgImIargD 247 (480)
T cd00288 176 DKAD-LRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKI-------ENQEGVNNFDEILEASDGIMVARGD 247 (480)
T ss_pred HHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEE-------CCHHHHHhHHHHHHhcCEEEECcch
Confidence 4443 56777889986433333 6788888877766532211111111 2345677777776655566677 7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhHHHHhhhhhHhHhhhcCceEEE
Q psy4673 117 YNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVH 161 (171)
Q Consensus 117 y~~~~~~~~~Q~~~F~~ql~lA~~~iH~r~a~~~~~~~~~p~iiH 161 (171)
..-.-...+.. .+-++.++.|+ +.++|+++=
T Consensus 248 Lg~e~g~~~v~-~~qk~ii~~~~-------------~~gkpvi~A 278 (480)
T cd00288 248 LGVEIPAEEVF-LAQKMLIAKCN-------------LAGKPVITA 278 (480)
T ss_pred hhhhcChHHHH-HHHHHHHHHHH-------------HcCCCEEEE
Confidence 76532221111 23345567777 788887753
No 398
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.25 E-value=3.5e+02 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHhcCCCEEEEeC
Q psy4673 39 RDLESVVQRAKDSGVQKIIAIG 60 (171)
Q Consensus 39 ~d~~~vl~~a~~~gv~~~i~v~ 60 (171)
+....+++.+.+.|+..+++.+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH
Confidence 3567788888899998766655
No 399
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.23 E-value=3.8e+02 Score=20.02 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=28.9
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHhcCCcEEEEeeeCCC
Q psy4673 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPH 89 (171)
Q Consensus 40 d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~~~~~v~~~~GiHP~ 89 (171)
+....++.+.+.|++.+++.+...+.....++..+++. +...+.+||.
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~--~~~g~~~~~~ 115 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELG--MKAGVALNPG 115 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCC--CeEEEEecCC
Confidence 44566777778888876555544445555555555554 3445566665
No 400
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=20.11 E-value=5.8e+02 Score=22.13 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCChhhHHHHHH
Q psy4673 37 FGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALR 71 (171)
Q Consensus 37 ~~~d~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~ 71 (171)
..++..++++..++.|+.-.|+.+...+.....++
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~ 365 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVS 365 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHH
Confidence 34788999999999998655554444444444443
No 401
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=20.07 E-value=1.5e+02 Score=19.96 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCChhhHHHHHHHHHh
Q psy4673 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI 75 (171)
Q Consensus 41 ~~~vl~~a~~~gv~~~i~v~~~~~~~~~~~~l~~~ 75 (171)
.+++.+.+++.|+-.++.-|.+.+..+++.+++++
T Consensus 17 ~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~ 51 (116)
T PF14226_consen 17 AEQLRDACEEWGFFYLVNHGIPQELIDRVFAAARE 51 (116)
T ss_dssp HHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEecccccchhhHHHHHHHHH
Confidence 45566777888876666666677667777666543
No 402
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=20.03 E-value=92 Score=22.36 Aligned_cols=27 Identities=26% Similarity=0.606 Sum_probs=21.1
Q ss_pred EeeeCCCC-CCCCCHHHHHHHHHHhccC
Q psy4673 83 TAGIHPHE-AKSWDEDYIDQLRDLVSNT 109 (171)
Q Consensus 83 ~~GiHP~~-~~~~~~~~~~~l~~~l~~~ 109 (171)
-+|+||+. +.+.++++++.|.++++++
T Consensus 36 ~lgi~~~~~~~~L~~~qi~~l~~~i~~~ 63 (122)
T PRK05179 36 AAGIDPDTRVKDLTDEELDKIREEIDKN 63 (122)
T ss_pred HhCcCcccccccCCHHHHHHHHHHHHhh
Confidence 37899975 4578888999999988754
Done!