RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4673
(171 letters)
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 116 bits (293), Expect = 8e-33
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
+ D+G NLT+ +F +D + VV A D+GV ++ G++L+ S++A +LAR Y +STA
Sbjct: 5 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWSTA 63
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSN 108
G+HPH++ W + + +L +
Sbjct: 64 GVHPHDSSQWQAATEEAIIELAAQ 87
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 116 bits (292), Expect = 2e-32
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM---VY 81
LID+G NLTN F ++V+RA ++GV +++ G+SL S++AL L + ++
Sbjct: 3 LIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLF 62
Query: 82 STAGIHPHEAKSWDEDYIDQLRDLVSN 108
+TAG+HPH+AK+WD D QLR L+S
Sbjct: 63 ATAGVHPHDAKAWDTDSERQLRLLLSE 89
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 111 bits (280), Expect = 1e-30
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 25 LIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
ID+G NLT+ F DL+ V+ RA + GV+K + G +L+ SK+AL LA+
Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62
Query: 75 IYPGMVYSTAGIHPHEAKSWDED----YIDQLRDLVSN 108
M +ST G HP ++++ Y+ +L +L N
Sbjct: 63 TNG-MFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAEN 99
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 108 bits (272), Expect = 3e-29
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 25 LIDVGANLTNRKFG----------RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
ID+GANLT+ + D++ V+QRA+ +G+ II L K+A+ +
Sbjct: 28 FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIIN 87
Query: 75 IYPG----MVYSTAGIHPHEAKSWD-EDYIDQLRDLVSN 108
Y + +T G+HP E Y+D+L L
Sbjct: 88 KYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEK 126
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 94.2 bits (235), Expect = 4e-24
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
L+D +L+ F RDL+ V+++AK + V ++A+ ++ ++L+ Y G V
Sbjct: 3 GVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVL 62
Query: 82 STAGIHPHEAKSWDEDYIDQLRDL 105
G+HP + ++ L+DL
Sbjct: 63 PCLGVHPVQGLPPEDQRSVTLKDL 86
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 90.3 bits (225), Expect = 9e-23
Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 21 DNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMV 80
++ ++D A+L +F D +V+ +++ ++ ++ +G +L+ SK++L L++ +
Sbjct: 9 HHHHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-I 67
Query: 81 YSTAGIHPHEAKSWDEDYIDQLRDLVSN 108
+ + G+HPH+AK ED+I+ L +
Sbjct: 68 FCSVGVHPHDAKEVPEDFIEHLEKFAKD 95
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 89.9 bits (224), Expect = 1e-22
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
LID +L + ++ DL V+ RA+++GV ++ +G + + + A++L Y +Y
Sbjct: 2 LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGII 60
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSN 108
G HP +A + E++++ + L +
Sbjct: 61 GWHPVDAIDFTEEHLEWIESLAQH 84
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 85.6 bits (213), Expect = 5e-21
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
ID + F D E+ +QRA +GV KII + ++ L LA Y +Y+
Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAAL 63
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSN 108
G+HP + + ++QL+ +
Sbjct: 64 GLHPGMLEKHSDVSLEQLQQALER 87
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 79.9 bits (198), Expect = 7e-19
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 36 KFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWD 95
+D++ V+ +A V+ +A+ ++L S L V + G+HP D
Sbjct: 17 SLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERD-NVVFSCGVHPLNQN--D 73
Query: 96 EDYIDQLRDLVSN 108
++ LR L +
Sbjct: 74 PYDVEDLRRLAAE 86
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 79.0 bits (194), Expect = 6e-18
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 54/135 (40%)
Query: 25 LIDVGANLTNRKF----------GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLAR 74
D+G NLT+ F D +++RA V+ + GSS+ S+ A+ L
Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVS 73
Query: 75 IYPGM--------------------------------------------VYSTAGIHPHE 90
+ +Y+ +P
Sbjct: 74 SVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSF 133
Query: 91 AKSWDEDYIDQLRDL 105
A+ ++ D +
Sbjct: 134 AQGKLKELYDLMNQQ 148
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 72.6 bits (179), Expect = 3e-16
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYI 99
V RA + ++++ ++ + + L LA P V++ G HP D +
Sbjct: 14 PDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRP-HVWTALGFHPEVVSERAAD-L 71
Query: 100 DQLRDL 105
Sbjct: 72 PWFDRY 77
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 48.1 bits (115), Expect = 2e-07
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM----- 79
D + F S + + K++G++++ ++ K + ++ +
Sbjct: 2 YFDSHLHSEGLGF-----SELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEP 56
Query: 80 ---------VYSTAGIHPHEAKSWDEDYIDQLRD 104
++ GIHP E + L +
Sbjct: 57 LRCEAAGVKMHPAVGIHPRCIPPDYEFVLGYLEE 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 4e-06
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 54/167 (32%)
Query: 4 SSSSNNNNELTKLTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAI---- 59
N+ L K NY+ + R F + S + RA G +++AI
Sbjct: 107 KLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 60 GSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNS 119
G++ +DY ++LRDL Y +
Sbjct: 164 GNT---------------------------------DDYFEELRDL-----------YQT 179
Query: 120 SQ-WITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSS 165
+ ++ + T ++ +K F++ LN W+ S+
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSN 224
Score = 28.5 bits (63), Expect = 1.5
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 21 DNYVLIDVGANLTNR-------KFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLA 73
D Y ++ NR +G + +V ++ V I G ++ R+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIV---INNPVNLTIHFGG-----EKGKRIR 1685
Query: 74 RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQ-TLFT 132
Y M++ T + + ++ + + ++ T+ Q L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-------TQFTQPALTL 1738
Query: 133 T 133
Sbjct: 1739 M 1739
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 39.2 bits (92), Expect = 2e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVH 161
+CE C + F+R+EHL RH H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSH 25
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.1 bits (87), Expect = 2e-04
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C FC K F+RK+++ H+ +
Sbjct: 43 CPFCFKEFTRKDNMTAHVKII 63
Score = 33.7 bits (78), Expect = 0.004
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C+ C + ++ + RH
Sbjct: 13 CKVCSRVYTHISNFCRH 29
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 36.5 bits (85), Expect = 6e-04
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C ++FSR +HL H+ H++
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
Score = 29.9 bits (68), Expect = 0.15
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C F+R + L RH H
Sbjct: 51 EGCDWRFARSDELTRHYRKH 70
Score = 28.0 bits (63), Expect = 0.76
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C++ C K +++ HL HL H
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTH 40
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 35.8 bits (83), Expect = 7e-04
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CEFC K F + + + H
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKS 61
Score = 32.8 bits (75), Expect = 0.009
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSMMK 168
CE C +K LN H H ++
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAAL 37
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 35.4 bits (82), Expect = 8e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 52 CRICMRNFSRSDHLTTHIRTH 72
Score = 30.7 bits (70), Expect = 0.044
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C + FSR + L RH+ +H
Sbjct: 25 ESCDRRFSRSDELTRHIRIH 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.6 bits (80), Expect = 9e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C ++FSR +HL H H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.9 bits (80), Expect = 0.001
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
CE C K F HLNRH H
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSG 37
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C + F+R+EHL RH H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH 25
Score = 31.7 bits (73), Expect = 0.013
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C C + F+R++ L RH
Sbjct: 33 CGLCNRAFTRRDLLIRH 49
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 34.5 bits (80), Expect = 0.001
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C+ C K FSR +HLN H+
Sbjct: 15 CQSCGKGFSRPDHLNGHI 32
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C + FSR +HL H+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 29.4 bits (67), Expect = 0.16
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
+ C F+R + L RH H
Sbjct: 41 DGCGWKFARSDELTRHYRKH 60
Score = 27.5 bits (62), Expect = 0.76
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C K +++ HL HL H
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTH 30
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 33.6 bits (78), Expect = 0.004
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C C +RK L HL
Sbjct: 48 CPHCDTVIARKSDLGVHL 65
Score = 32.9 bits (76), Expect = 0.007
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C F++ + H+
Sbjct: 18 CYICHARFTQSGTMKMHILQK 38
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.006
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C KNF R HL HL H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.1 bits (74), Expect = 0.008
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C F + HL H+ +H
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 33.6 bits (78), Expect = 0.009
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ CQ+ FSR +HL H H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTH 89
Score = 29.0 bits (66), Expect = 0.32
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C + CQK F+R + L RH +H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C+F C++ FSR + L RH H
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRH 61
Score = 26.3 bits (59), Expect = 3.1
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 141 CE--FCQKNFSRKEHLNRHLWVH 161
C C K + + HL H H
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKH 31
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH 26
Score = 30.9 bits (71), Expect = 0.056
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C + F+R + RH +
Sbjct: 34 CDICGRKFARSDERKRHRDIQ 54
Score = 29.0 bits (66), Expect = 0.25
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 141 CEFCQKNFSRKEHLNRH 157
+ ++ S+ HL
Sbjct: 61 EDKVEELLSKNYHLENE 77
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.4 bits (72), Expect = 0.012
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
+C K F+R + L RH H
Sbjct: 8 SYCGKRFTRSDELQRHKRTH 27
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.016
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C + F+ K HLN+H +H
Sbjct: 15 CHECGRGFTLKSHLNQHQRIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.020
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F + LNRH VH
Sbjct: 15 CDICGKSFCGRSRLNRHSMVH 35
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH 57
Score = 32.1 bits (74), Expect = 0.021
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C + F+R + RH +H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 27.8 bits (63), Expect = 0.74
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 144 CQKNFSRKEHLNRHLWVH 161
C + FS+ L RH+ +H
Sbjct: 12 CDRRFSQSGSLTRHIRIH 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 30.6 bits (69), Expect = 0.023
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C K F R +HL H+ +H++
Sbjct: 5 CPECPKRFMRSDHLTLHILLHEN 27
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.026
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R+ HL HL +H
Sbjct: 15 CNECGKGFGRRSHLAGHLRLH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.026
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C+K F + HLN+H VH
Sbjct: 15 CKECRKTFIQIGHLNQHKRVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 30.7 bits (70), Expect = 0.027
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
C FSR + L+RH H
Sbjct: 18 PGCGWRFSRSDELSRHRRSH 37
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.7 bits (68), Expect = 0.030
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDS 164
C C F RK+ ++ H+ H S
Sbjct: 13 CPVCGLRFKRKDRMSYHVRSHDGS 36
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 30.3 bits (68), Expect = 0.030
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C K F R +HL++H+ +H+
Sbjct: 5 CPECPKRFMRSDHLSKHITLHEL 27
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.034
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K + R+ L+ H VH
Sbjct: 15 CVECGKGYKRRLDLDFHQRVH 35
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 31.0 bits (71), Expect = 0.037
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C C K+F+ K+HL H+ +H
Sbjct: 41 CPEPACGKSFNFKKHLKEHMKLH 63
Score = 28.7 bits (65), Expect = 0.23
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 141 CEF--CQKNFSRKEHLNRH 157
C+F C + FS +++LN H
Sbjct: 10 CDFPGCGRIFSNRQYLNHH 28
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.039
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F HLN+HL VH
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.2 bits (69), Expect = 0.041
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C F + L HL +H
Sbjct: 14 CEICGTRFRHLQTLKSHLRIH 34
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 31.9 bits (73), Expect = 0.045
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C F C K F+R E+L H H
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTH 115
Score = 31.1 bits (71), Expect = 0.10
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
+ C + FS L H+ +
Sbjct: 28 KKSCDRTFSTMHELVTHVTME 48
Score = 29.2 bits (66), Expect = 0.43
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C K+F K L H+ VH
Sbjct: 65 CPREGKSFKAKYKLVNHIRVH 85
Score = 27.3 bits (61), Expect = 1.8
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
CEF C + F+ +H+ VH
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.048
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F++ HL+ H VH
Sbjct: 15 CEECGKRFTQNSHLHSHQRVH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.050
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSS 165
C C + F+++ +L +H H S
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKS 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.6 bits (67), Expect = 0.056
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C++ FS L +H +H
Sbjct: 13 CAECKETFSDNNRLVQHQKMH 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.056
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R HLN H +H
Sbjct: 15 CSECGKAFHRHTHLNEHRRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.058
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K ++R+ +L+ H VH
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVH 35
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 32.3 bits (73), Expect = 0.063
Identities = 8/94 (8%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDY 98
+ + + Q + S+ AL++ G+ P + +
Sbjct: 98 NAILMIFEHF---KFQSYLLCVHSI-GGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGF 153
Query: 99 IDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFT 132
L ++ + ++ ++ ++ F+
Sbjct: 154 SSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFS 187
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.4 bits (68), Expect = 0.072
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C+K+ ++ LN+
Sbjct: 42 CEKCRKDSCQEAALNKDEGNE 62
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.072
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F +K HLNRH +H
Sbjct: 15 CNECGKSFIQKSHLNRHRRIH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.5 bits (67), Expect = 0.078
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+R HL RH +H
Sbjct: 15 CNECGKAFTRIFHLTRHQKIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 29.4 bits (67), Expect = 0.078
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSR+ LN H +H
Sbjct: 15 CVECGKGFSRRSALNVHHKLH 35
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 30.0 bits (68), Expect = 0.080
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C C K + + HL H H
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTH 42
Score = 28.5 bits (64), Expect = 0.32
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C + C++ F+R + L+RH H
Sbjct: 50 CSWKGCERRFARSDELSRHRRTH 72
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 30.5 bits (70), Expect = 0.085
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F HLNRH H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSH 30
Score = 30.2 bits (69), Expect = 0.10
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C F RK+ ++ H+ H
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSH 58
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C+ C K FSR +HLN H+
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.088
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K ++ K +L+ H VH
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVH 35
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 29.8 bits (68), Expect = 0.094
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C +C + + +L++H+
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKF 60
Score = 29.4 bits (67), Expect = 0.13
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C + S K L H +H
Sbjct: 12 CSECSYSCSSKAALRIHERIH 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.094
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+++++ HL +H VH
Sbjct: 15 CGECGKSYNQRVHLTQHQRVH 35
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 31.0 bits (71), Expect = 0.095
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C F C+K++SR E+L HL H
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSH 92
Score = 28.7 bits (65), Expect = 0.55
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C + F + L H+ H
Sbjct: 42 CSRELRPFKAQYMLVVHMRRH 62
Score = 28.7 bits (65), Expect = 0.70
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
+ C + F +E L H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSE 26
Score = 26.4 bits (59), Expect = 3.5
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C+ C K ++ L +H+
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVKTV 153
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 30.6 bits (70), Expect = 0.096
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F L RH VH
Sbjct: 37 CAECGKAFVESSKLKRHQLVH 57
Score = 29.0 bits (66), Expect = 0.39
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
+ C K F + +HL H
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH 30
Score = 26.3 bits (59), Expect = 3.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 144 CQKNFSRKEHLNRHLWVH 161
C K F++ +L H+ H
Sbjct: 100 CNKKFAQSTNLKSHILTH 117
Score = 25.9 bits (58), Expect = 4.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 144 CQKNFSRKEHLNRHLWVH 161
C K FS +L H+ +H
Sbjct: 70 CGKRFSLDFNLRTHVRIH 87
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.097
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE+C K F K L HL +H
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIH 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS L +H H
Sbjct: 15 CSECGKSFSGSYRLTQHWITH 35
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 29.8 bits (68), Expect = 0.11
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F +K+ L+ H +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRY 38
Score = 29.4 bits (67), Expect = 0.17
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+R+ + RH
Sbjct: 50 CSKCGKTFTRRNTMARHADNC 70
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R HL RH +H
Sbjct: 15 CHECGKVFRRNSHLARHQLIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.12
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F + HL +H +H
Sbjct: 15 CNECGKSFIQSAHLIQHQRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K FS+ HL H VH
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVH 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.13
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 140 LCEFCQKNFSRKEHLNRH 157
C C + F+R++ L RH
Sbjct: 4 ACGLCNRAFTRRDLLIRH 21
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL RH +H
Sbjct: 15 CNECGKVFTQNSHLARHRGIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.13
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C+K+FS K L H +H
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.14
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F++ L+ H VH
Sbjct: 15 CEECGKRFTQNSQLHSHQRVH 35
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Length = 738
Score = 31.2 bits (70), Expect = 0.14
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 74 RIYPGMVYSTAGIHPHEAKSWDED---YIDQLR--DLVSNTGNSTMNR--------YNSS 120
R P V + PH W D + + D N + ++ +
Sbjct: 143 RRAPIAVKNFVKKFPHRMGEWSADSKTNVATMDANDFRHNEKSIILDAADEVQIKHIAAD 202
Query: 121 QWITEIKQTLF--------TTFVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMK 168
T +K +L T + AL F + +R + H ++MMK
Sbjct: 203 GTETILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFSAHLKATMMK 258
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.15
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL H +H
Sbjct: 15 CNECGKVFTQNSHLTNHWRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.16
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F + HL HL +H
Sbjct: 15 CKECGKAFRQNIHLASHLRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.18
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F++K HL +H H
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTH 35
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 31.0 bits (71), Expect = 0.18
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 18/78 (23%)
Query: 41 LESVVQRAKDSGVQKIIAI-----------GSSLKSSKEALRLARIYPGMVYSTAGIHP- 88
++ GV+K +A GSS+ ++ + +S I
Sbjct: 111 TAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV--IDRW 168
Query: 89 HEAKSWDEDYIDQLRDLV 106
+E I + +
Sbjct: 169 PT----NEGLIKAFSENI 182
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.19
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS LN+H +H
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.19
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL RH VH
Sbjct: 15 CNECGKVFTQNSHLARHRRVH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.19
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C FS+ L H VH
Sbjct: 15 CRECDMCFSQASSLRLHQNVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 28.3 bits (64), Expect = 0.19
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSR L++H +H
Sbjct: 15 CNECGKVFSRNSQLSQHQKIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.20
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+RK L+ H +H
Sbjct: 15 CTECGKAFTRKSTLSMHQKIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.20
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL RH +H
Sbjct: 15 CNECGKVFTQNSHLARHRGIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 28.3 bits (64), Expect = 0.20
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K FS+K L H+ VH
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVH 34
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.21
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F + L H VH
Sbjct: 15 CEECGKGFICRRDLYTHHMVH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (63), Expect = 0.22
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C+K FS K +L H H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTH 33
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F H H
Sbjct: 15 CEECGKGFYTNSQCYSHQRSH 35
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 29.3 bits (67), Expect = 0.23
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K FSRK+ L H+ H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH 31
Score = 29.3 bits (67), Expect = 0.24
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C + LN+HL +H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIH 59
Score = 28.2 bits (64), Expect = 0.48
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C L HL H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.23
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL RH +H
Sbjct: 15 CNECGKVFTQNSHLVRHRGIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.23
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSRK+ L H H
Sbjct: 15 CCECGKVFSRKDQLVSHQKTH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.9 bits (63), Expect = 0.24
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+RK+ L H H
Sbjct: 13 CSECGKAFNRKDQLISHQRTH 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.24
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+RK L+ H H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.25
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSRK L H H
Sbjct: 15 CHECGKAFSRKYQLISHQRTH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.26
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+FSR L +H +H
Sbjct: 15 CKECGKSFSRAPCLLKHERLH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.9 bits (63), Expect = 0.26
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K FS+ HL +H VH
Sbjct: 15 CKECGKAFSQTTHLIQHQRVH 35
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 28.6 bits (65), Expect = 0.26
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ CQ +F K +L H VH
Sbjct: 20 CDRCQASFRYKGNLASHKTVH 40
Score = 28.2 bits (64), Expect = 0.41
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C F+R +L H +H
Sbjct: 48 CNICGAQFNRPANLKTHTRIH 68
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.28
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F +L+RH +H
Sbjct: 15 CNECGKVFRHNSYLSRHQRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.28
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F HL +H VH
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVH 35
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 0.29
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C F C K F R+ ++ H+ H
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQTH 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.29
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F +K L+ H +H
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIH 35
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.4 bits (67), Expect = 0.30
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C CQ+ F R+ L H+ H
Sbjct: 69 CSVCQETFRRRMELRLHMVSH 89
Score = 28.6 bits (65), Expect = 0.52
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K +L H H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKH 30
Score = 28.2 bits (64), Expect = 0.78
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C C K + RKE+L H
Sbjct: 38 CPKCGKCYFRKENLLEH 54
Score = 27.1 bits (61), Expect = 1.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C C + F +K+ L H
Sbjct: 97 CSSCSQQFMQKKDLQSH 113
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 30.3 bits (69), Expect = 0.30
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
Query: 41 LESVVQRAKDSGVQKIIAI-----------GSSLKSSKEALRLARIYPGMVYSTAGIHPH 89
E ++ + G+++ IA GSSL + P M +ST I
Sbjct: 106 TEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWST--ID-- 161
Query: 90 EAKSW--DEDYIDQLRDLV 106
W I D +
Sbjct: 162 ---RWPTHHLLIQCFADHI 177
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.30
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++K +L +H +H
Sbjct: 15 CGECGKAFAQKANLTQHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.30
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C CQK F+ K +L H H
Sbjct: 15 CNECQKAFNTKSNLMVHQRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 27.5 bits (62), Expect = 0.31
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F K +L H +H
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.5 bits (62), Expect = 0.32
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F +K L H +H
Sbjct: 13 CQECGKSFRQKGSLTLHERIH 33
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.33
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS+K L+ H H
Sbjct: 15 CNECGKTFSQKSILSAHQRTH 35
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 30.0 bits (67), Expect = 0.33
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 32 LTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEA 91
+TNR GR+ + ++ +++G+ + G Y + +
Sbjct: 53 MTNRYMGRNAQFMLDVMRETGINVVACTG--------------YYQDAFFP-EHVATRSV 97
Query: 92 KSWDEDYIDQLRDLVSNTGN 111
+ ++ +D++ + T
Sbjct: 98 QELAQEMVDEIEQGIDGTEL 117
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.5 bits (62), Expect = 0.33
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS L H +H
Sbjct: 15 CAECGKSFSISSQLATHQRIH 35
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 28.9 bits (66), Expect = 0.35
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+FC ++F++ +L H H
Sbjct: 20 CKFCGRHFTKSYNLLIHERTH 40
Score = 28.6 bits (65), Expect = 0.49
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F R++HL H ++H
Sbjct: 48 CDICHKAFRRQDHLRDHRYIH 68
Score = 26.6 bits (60), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F + L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.35
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS K +L H+ H
Sbjct: 15 CSECGKAFSSKSYLIIHMRTH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.38
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+RK L H +H
Sbjct: 15 CSECGKAFARKSTLIMHQRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.38
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F++ HL H +H
Sbjct: 15 CNECGKVFTQNSHLANHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.39
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F+ K L H H
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.40
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C++C K F L RH +H
Sbjct: 15 CDYCGKAFGLSAELVRHQRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.41
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F +K L+ H +H
Sbjct: 15 CSECGKAFIQKSTLSMHQRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.41
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F +L H +H
Sbjct: 15 CNECGKAFRAHSNLTTHQVIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.2 bits (61), Expect = 0.43
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C NFS L +HL H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSH 35
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 27.8 bits (63), Expect = 0.43
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSR L +H VH
Sbjct: 17 CVECGKAFSRSSILVQHQRVH 37
Score = 27.0 bits (61), Expect = 0.93
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS+ L H +H
Sbjct: 45 CLECGKAFSQNSGLINHQRIH 65
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 30.1 bits (67), Expect = 0.43
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 59 IGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDED---YIDQLR--DLVSNTGNST 113
GS++ R P V + A HPH+ +W D ++ + D + +
Sbjct: 130 KGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDNGDFYGSEKAAL 189
Query: 114 MNRYNS----------------SQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRH 157
+ S ++ + + + ++ + AL F +
Sbjct: 190 IGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVL 249
Query: 158 LWVHKDSSMMK 168
L VH ++MMK
Sbjct: 250 LSVHLKATMMK 260
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.43
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K F L H +H
Sbjct: 15 CEECGKAFIHDSQLQEHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.45
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+ K +L H +H
Sbjct: 15 CSECGKVFTHKTNLIIHQKIH 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.7 bits (63), Expect = 0.47
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 140 LCEFCQKNFSRKEHLNRHLW-VHKDSSM 166
C C + F + RH VH ++M
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 26.8 bits (58), Expect = 2.1
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 116 RYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLNRHLWVHKDS 164
R +++ + ++Q A+C +C F E H +
Sbjct: 20 RLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Score = 26.0 bits (56), Expect = 4.2
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSM 166
C C S H + +++++
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAV 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.51
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS+ L RH +H
Sbjct: 15 CNECGKAFSQTSKLARHQRIH 35
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 27.8 bits (63), Expect = 0.52
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C++C K F +K + +H ++H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIH 52
Score = 27.4 bits (62), Expect = 0.73
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F R L+ HL +H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIH 24
Score = 26.2 bits (59), Expect = 2.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K FS+ +L H H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.52
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+F++K L+ H +H
Sbjct: 15 CSICGKSFTKKSQLHVHQQIH 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.52
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 54 QKIIAIGSSLK----SSKEALRL-ARI 75
Q + + +SLK S AL + A +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.52
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C CQK F+ K +L H
Sbjct: 15 CSECQKAFNTKSNLIVH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.54
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+ + +L +H +H
Sbjct: 15 CAECGKAFTIRSNLIKHQKIH 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.0 bits (59), Expect = 0.55
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVHKDS 164
+C C F+ K + RHL VH D+
Sbjct: 9 VCRICLSAFTTKANCARHLKVHTDT 33
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.56
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K L H H
Sbjct: 15 CIECGKAFKTKSSLICHRRSH 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.2 bits (64), Expect = 0.56
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F+ K +RH+ +H
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMH 32
Score = 27.8 bits (63), Expect = 0.86
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K HL H+ +H
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIH 60
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.57
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS+ L RH VH
Sbjct: 15 CNECGKAFSQTSKLARHQRVH 35
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.9 bits (60), Expect = 0.58
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C C K + + HL HL H
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWH 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 28.0 bits (62), Expect = 0.59
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
+ C + FS L H+
Sbjct: 28 KKSCDRTFSTMHELVTHV 45
Score = 27.2 bits (60), Expect = 1.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C K+F K L H+ VH
Sbjct: 65 CPREGKSFKAKYKLVNHIRVH 85
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.61
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS L H +H
Sbjct: 15 CNECGKAFSVYSSLTTHQVIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 28.4 bits (62), Expect = 0.64
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSM 166
C C FS L +H+ + + +
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV 102
Score = 28.4 bits (62), Expect = 0.74
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C C+K F+ + H+
Sbjct: 103 CPVCKKEFTSTDSALDHV 120
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.66
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+ + +L H +H
Sbjct: 15 CAECGKAFTDRSNLFTHQKIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 0.68
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K L H H
Sbjct: 15 CTECGKAFCWKSQLIMHQRTH 35
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 28.8 bits (65), Expect = 0.74
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 31 NLTNRKFGRDL-ESVVQRAKDSGVQKIIAIGSSLKSSKEALRL-ARIYPGMVYSTAGI-- 86
+ +F L + ++ A + +IA G+ + + R+ G+ GI
Sbjct: 110 HPGALEFINPLTDRFIEVANEIEPFGVIAPGT---RPERIGYIRDRLKEGIKILAPGIGA 166
Query: 87 ---HPHEAKSWDEDYI 99
+A DYI
Sbjct: 167 QGGKAKDAVKAGADYI 182
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.77
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F+ + +L +H +H
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIH 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 0.77
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C+++F K L+RH VHK+
Sbjct: 4 CGLCERSFVEKSALSRHQRVHKN 26
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.6 bits (62), Expect = 0.78
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C K FS L RH VH
Sbjct: 37 EGCDKRFSLPSRLKRHEKVH 56
Score = 26.8 bits (60), Expect = 1.3
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C F C K F + L H + H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSH 26
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.2 bits (57), Expect = 0.83
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C C K F R + L++H+
Sbjct: 5 CPACPKRFMRSDALSKHI 22
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.4 bits (62), Expect = 0.84
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+FS L++H H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTH 41
Score = 27.0 bits (61), Expect = 0.97
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K F ++ HL H VH
Sbjct: 49 CDECGKAFIQRSHLIGHHRVH 69
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.85
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K +L H H
Sbjct: 15 CNECGKAFRSKSYLIIHTRTH 35
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.1 bits (57), Expect = 0.85
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVHKDSS 165
C+ C K F R L RH H++ +
Sbjct: 6 CDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.87
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS ++ L+ H +H
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.87
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F + + +H +H
Sbjct: 15 CSDCGKFFLQASNFIQHRRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 26.3 bits (59), Expect = 0.90
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS K L H H
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.91
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C+K F++ L H +H
Sbjct: 15 CNECKKTFTQSSSLTVHQRIH 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 26.3 bits (57), Expect = 0.92
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C CQ+ F+ L RH+ +H
Sbjct: 6 CIHCQRQFADPGALQRHVRIH 26
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 28.6 bits (65), Expect = 0.93
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 41 LESVVQRAKDSGVQKIIAI-------GSSLKSS-KEALRLARIYPGMVYSTAGIHPHEAK 92
+E V G+ + ++I S++S K A A G+ ++ +
Sbjct: 93 IEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITS-------VE 145
Query: 93 SW--DEDYIDQLRDLV 106
SW + ++ D V
Sbjct: 146 SWYDEPKFVTYWVDRV 161
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.1 bits (64), Expect = 0.99
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSS 165
C C L+ H+ H
Sbjct: 183 CHVCSAVLFSPLDLDAHVASHGLHG 207
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.00
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F L H +H
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIH 35
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 28.2 bits (64), Expect = 1.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FSR +HL H H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTH 44
Score = 27.8 bits (63), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS++ +L H H
Sbjct: 80 CPECGKSFSQRANLRAHQRTH 100
Score = 27.8 bits (63), Expect = 1.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FSR+++L+ H H
Sbjct: 136 CPECGKSFSREDNLHTHQRTH 156
Score = 27.4 bits (62), Expect = 1.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS K+ L RH H
Sbjct: 52 CPECGKSFSDKKDLTRHQRTH 72
Score = 27.4 bits (62), Expect = 2.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FSR++ LN H H
Sbjct: 164 CPECGKSFSRRDALNVHQRTH 184
Score = 27.0 bits (61), Expect = 3.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS+ HL H H
Sbjct: 108 CPECGKSFSQLAHLRAHQRTH 128
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS + L H +H
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIH 35
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 28.3 bits (64), Expect = 1.1
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 43 SVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDYIDQL 102
S + AK G IIA+ + S+ LA+ G T I+ +D + +
Sbjct: 205 SALLAAKVCGASIIIAVD--IVESRLE--LAKQL-GA---THVINSK-----TQDPVAAI 251
Query: 103 RDL 105
+++
Sbjct: 252 KEI 254
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K+FS L H +H
Sbjct: 15 CRECGKSFSFNSQLIVHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C+K FS L +H VH
Sbjct: 15 CDVCRKAFSHHASLTQHQRVH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 26.2 bits (57), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C +C +F K +L +H+
Sbjct: 32 CTYCNFSFKTKGNLTKHMKSK 52
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F +H +H
Sbjct: 15 CMECGKAFGDNSSCTQHQRLH 35
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 28.2 bits (63), Expect = 1.3
Identities = 10/72 (13%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 40 DLESVVQRAKDSGVQKIIAIGSSLK-----SSKEALRLARIYPGMVYSTAGIHPHEAKSW 94
LE + + +G+++ + +G + S+ + +A+ YP + I
Sbjct: 48 SLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDKFHPVGSIEAAT---- 103
Query: 95 DEDYIDQLRDLV 106
++ + Q+++++
Sbjct: 104 RKEAMAQMQEIL 115
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.0 bits (58), Expect = 1.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+F L +H VH
Sbjct: 15 CKECGKSFRWASCLLKHQRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 26.0 bits (58), Expect = 1.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 141 CEFCQKNFSRKEHLNRH 157
C C K F + L RH
Sbjct: 15 CIECGKAFIQNTSLIRH 31
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 28.5 bits (63), Expect = 1.4
Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDEDY 98
++ + +D + + +G L + E + L+++ + + D DY
Sbjct: 171 TEMSLFARINEDGKLTLVNHLGIDLGETPEQI-LSKLDDDR-IKDDDVRHDGRHAHDYDY 228
Query: 99 IDQLRDLVSNT 109
+ ++RD+ ++T
Sbjct: 229 VHRVRDIEADT 239
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 28.0 bits (62), Expect = 1.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 140 LCEFCQKNFSRKEHLNRH 157
+ +F + F K+ R+
Sbjct: 38 IDDFTLQYFGSKKQYERY 55
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.9
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F + L H H
Sbjct: 15 CNECGKAFRARSSLAIHQATH 35
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.5 bits (56), Expect = 1.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHK 162
C FC++ F + L H+ VH+
Sbjct: 9 CSFCKREFRSAQALGGHMNVHR 30
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 32 LTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEA 91
T GR+ + + ++ +G+Q + A G +
Sbjct: 83 ATPNGCGRNPAFLREVSEATGLQILCATG---------FYYEGGGATTYFKFRASLGDAE 133
Query: 92 KSWDEDYIDQLRDLVSNTGN 111
E ++ + ++ TG
Sbjct: 134 SEIYEMMRTEVTEGIAGTGI 153
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 27.0 bits (59), Expect = 2.0
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSMMKELH 171
C +C +F + L+ H M+K H
Sbjct: 83 CMYCGHSFESLQDLSVH--------MIKTKH 105
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 25.2 bits (56), Expect = 2.4
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K L H H
Sbjct: 15 CNECGKAFIWKSLLIVHERTH 35
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 27.2 bits (61), Expect = 2.4
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C F C +++ L HL H
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKH 37
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C+K F+ HL RH H
Sbjct: 48 EGCEKGFTSLHHLTRHSLTH 67
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.8 bits (53), Expect = 2.8
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS K + H VH
Sbjct: 6 CSVCGKRFSLKHQMETHYRVH 26
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 145
Score = 26.5 bits (59), Expect = 3.0
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 82 STAGIHPHEAKSWDEDYIDQLRDL 105
K E+ + LR
Sbjct: 80 LDLNFDNKVTKDLSEEEVIILRKE 103
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 26.9 bits (59), Expect = 4.0
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 30 ANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSL 63
T L +V + G Q I I +SL
Sbjct: 82 DEFTMTTGKNSLCTVYHWLQTKGTQNIGLIAASL 115
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.5 bits (54), Expect = 4.1
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C KNF L H VH
Sbjct: 15 CDECGKNFCYISALRIHQRVH 35
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin,
amino-acid biosynthesis, FAD, flavoprotein, methionine
biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli
k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A*
2fmn_A* 2fmo_A* 1b5t_A*
Length = 304
Score = 26.8 bits (60), Expect = 4.3
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 40 DLESVVQRAKDSGVQKIIA--------IGSSLKSSKEALRLARIYPGMVYSTAG---IHP 88
+L ++ + ++G++ I+A G + + + L + S A +HP
Sbjct: 98 ELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHP 157
Query: 89 HEAKSWDED 97
EAKS D
Sbjct: 158 -EAKSAQAD 165
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 4.4
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
E ++ E L +
Sbjct: 211 REKSEQVLDNPEDLRGPI 228
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 26.1 bits (58), Expect = 4.7
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 33 TNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRL 72
++ R+ VQ K V +I +G ++ + +RL
Sbjct: 127 EPQRMSRNFVRYVQGLKKKKVI-VIPVGIGPHANLKQIRL 165
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 26.3 bits (58), Expect = 6.8
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 87 HPHEAKSWDEDYIDQLRDLV-SNTGNSTMNRYNSSQWITEIKQTLFTTF 134
HP+E DE D+ + ++ + ++ F +
Sbjct: 147 HPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGW 195
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 25.8 bits (56), Expect = 7.3
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 32 LTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEA 91
T GR+ + + A+++G+ I A G + +
Sbjct: 73 PTPNDCGRNPAFLRRVAEETGLNIICATG---------YYYEGEGAPPYFQFRRLLGTAE 123
Query: 92 KSWDEDYIDQLRDLVSNTGN 111
+ ++ +L + +++TG
Sbjct: 124 DDIYDMFMAELTEGIADTGI 143
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 30 ANLTNRK---FGRDLESVVQRAKDSG 52
A RK GR + + A + G
Sbjct: 261 AEKYGRKVAMEGRSMLKFSRIALELG 286
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 25.7 bits (56), Expect = 7.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 140 LCEFCQKNFSRKEHLNRHL 158
LCEFC K + L +H+
Sbjct: 43 LCEFCLKYMKSRTILQQHM 61
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.5 bits (50), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C++ F + +RH+ VH D
Sbjct: 12 CHICERKFKNELDRDRHMLVHGD 34
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.1 bits (57), Expect = 8.7
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 16/78 (20%)
Query: 40 DLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARI---YPGMVYSTAGIHPHEAKSWDE 96
E +++ A + +K+ ++ +I YP + HP
Sbjct: 22 KREEIIEMANK-------DFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPV------N 68
Query: 97 DYIDQLRDLVSNTGNSTM 114
D I+ LR G
Sbjct: 69 DTIENLRQAYLRMGFEEY 86
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A
1kh2_A* 1kh3_A* 1j20_A*
Length = 400
Score = 25.5 bits (57), Expect = 9.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII 57
D+G G ++E ++A +G K I
Sbjct: 31 FTADIGQ-------GEEVEEAREKALRTGASKAI 57
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, ST genomics, structural genomics
consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 25.6 bits (57), Expect = 9.3
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 24 VLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII 57
L ++G D E ++A G +K+
Sbjct: 35 YLANIGQ-------KEDFEEARKKALKLGAKKVF 61
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 25.8 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 52 GVQKIIAIGSSLKSSKEALRLAR----IYP 77
G + A G+ KS L + IY
Sbjct: 282 GERIFRAAGAGYKS----LCVILGLADIYI 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.373
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,510,753
Number of extensions: 138476
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 260
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)