RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4673
(171 letters)
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 67.7 bits (164), Expect = 8e-15
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
+ D+G NLT+ +F +D + VV A D+GV ++ G++L+ S++A +LAR Y +STA
Sbjct: 1 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYS-SCWSTA 59
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQW 122
G+HPH++ W + + +L + +
Sbjct: 60 GVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFN 97
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 62.4 bits (150), Expect = 6e-13
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 8/143 (5%)
Query: 25 LIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTA 84
ID + F D E+ +QRA +GV KII + ++ L LA Y +Y+
Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQ-PLYAAL 63
Query: 85 GIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFC 144
G+HP + + ++QL+ + R + EI LF
Sbjct: 64 GLHPGMLEKHSDVSLEQLQQAL-------ERRPAKVVAVGEIGLDLFGDDPQFERQQWLL 116
Query: 145 QKNFSRKEHLNRHLWVHKDSSMM 167
+ + + + +H +
Sbjct: 117 DEQLKLAKRYDLPVILHSRRTHD 139
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 58.0 bits (139), Expect = 3e-11
Identities = 21/80 (26%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 22 NYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
++ ++D A+L +F D +V+ +++ ++ ++ +G +L+ SK++L L++ +
Sbjct: 2 HHHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFC 61
Query: 82 STAGIHPHEAKSWDEDYIDQ 101
+ G+HPH+AK ED+I+
Sbjct: 62 -SVGVHPHDAKEVPEDFIEH 80
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 52.8 bits (125), Expect = 3e-09
Identities = 14/158 (8%), Positives = 41/158 (25%), Gaps = 4/158 (2%)
Query: 16 LTNCFDNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKII--AIGSSLKSSKEALRLA 73
+ ++ + + ++RA+ +GV+ I+ + + ++
Sbjct: 24 ICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVS 83
Query: 74 RIYPGMVYSTAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTT 133
R + + G+ S +++L + I ++ T T
Sbjct: 84 RAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKAT 143
Query: 134 FVDITALCEFCQKNFSRKEHLNRHLWVHKDSSMMKELH 171
L S + ++
Sbjct: 144 PFQELVLKA--AARASLATGVPVTTHTAASQRDGEQQA 179
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 48.1 bits (113), Expect = 9e-08
Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 15/140 (10%)
Query: 25 LIDVGANLTNRKF---GRDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVY 81
L+D +L + +D++ V+ +A V+ +A+ ++L S L V
Sbjct: 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERD-NVV 61
Query: 82 STAGIHPHEAKSWDEDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALC 141
+ G+HP + + + + E + T
Sbjct: 62 FSCGVHPLNQNDPYDVEDLR-----------RLAAEEGVVALGETGLDYYYTPETKVRQQ 110
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E + LN+ + VH
Sbjct: 111 ESFIHHIQIGRELNKPVIVH 130
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 39.1 bits (90), Expect = 1e-04
Identities = 12/126 (9%), Positives = 33/126 (26%), Gaps = 6/126 (4%)
Query: 40 DLESVVQRAKDSGVQKII--AIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKS--WD 95
+ + GV+ +I ++++ L + R V + G +
Sbjct: 34 FICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVA 93
Query: 96 EDYIDQLRDLVSNTGNSTMNRYNSSQWITEIKQTLFTTFVDITALCEFCQKNFSRKEHLN 155
+ +L + + ++ I I + + +
Sbjct: 94 TRSVQELAQEMVDEIEQGIDGTELKAGI--IAEIGTSEGKITPLEEKVFIAAALAHNQTG 151
Query: 156 RHLWVH 161
R + H
Sbjct: 152 RPISTH 157
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 34.9 bits (81), Expect = 2e-04
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C + F+R+EHL RH H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 33.4 bits (77), Expect = 7e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C +NFSR +HL H+ H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH 26
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.5 bits (77), Expect = 7e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSS 165
C C K F +K+ L+ H + D +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.4 bits (77), Expect = 8e-04
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FSR L +H VH
Sbjct: 10 CVECGKAFSRSSILVQHQRVH 30
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 33.1 bits (76), Expect = 8e-04
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F R +HL++H+ H
Sbjct: 5 CPECPKRFMRSDHLSKHIKTH 25
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.1 bits (75), Expect = 0.002
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K F K HL H+ +H
Sbjct: 33 CGVCGKKFKMKHHLVGHMKIH 53
Score = 29.7 bits (66), Expect = 0.031
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDSSMMK 168
C+ C K+F+ K +RH+ +H
Sbjct: 6 CQ-CGKSFTHKSQRDRHMSMHLGLRPYG 32
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 32.4 bits (74), Expect = 0.002
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKDS 164
C C F+ K + RHL VH D+
Sbjct: 10 CRICLSAFTTKANCARHLKVHTDT 33
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.3 bits (74), Expect = 0.002
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
+ C K F++ +L H+ H
Sbjct: 8 DGCNKKFAQSTNLKSHILTH 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.5 bits (72), Expect = 0.004
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 141 CEFCQKNFSRKEHLNRHL 158
C+ C K FSR +HLN H+
Sbjct: 8 CQSCGKGFSRPDHLNGHI 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 31.1 bits (71), Expect = 0.005
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
+C K F+R + L RH H
Sbjct: 7 WSYCGKRFTRSDELQRHKRTH 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.1 bits (71), Expect = 0.005
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 141 CEF--CQKNFSRKEHLNRHLWVH 161
C+ C K F R L RH H
Sbjct: 6 CDHPGCDKAFVRNHDLIRHKKSH 28
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 34.0 bits (78), Expect = 0.006
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 31/151 (20%)
Query: 39 RDLESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDED- 97
+D+++ + K S V ++ G+S R P V + A HPH+ +W D
Sbjct: 119 KDVKARYDKIKGSAVNPVLREGNS----------DRRAPLSVKNYARKHPHKMGAWSADS 168
Query: 98 --YIDQLR--DLVSNTGNSTMNRYNSSQW--------ITEIKQTLF--------TTFVDI 137
++ + D + + + S + T +K ++ +
Sbjct: 169 KSHVAHMDNGDFYGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSK 228
Query: 138 TALCEFCQKNFSRKEHLNRHLWVHKDSSMMK 168
AL F + L VH ++MMK
Sbjct: 229 NALRNFIAAEIEDAKKQGVLLSVHLKATMMK 259
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 30.9 bits (70), Expect = 0.006
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C ++FSR +HL H H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 30.8 bits (70), Expect = 0.007
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C + FSR L RH+ +H
Sbjct: 8 ESCDRRFSRSADLTRHIRIH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 30.8 bits (70), Expect = 0.008
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C+K++SR E+L HL H
Sbjct: 8 EGCRKSYSRLENLKTHLRSH 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.8 bits (70), Expect = 0.008
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C K+F+ K+HL H+ +H
Sbjct: 6 EPACGKSFNFKKHLKEHMKLH 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.3 bits (69), Expect = 0.009
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C F++ + H+
Sbjct: 11 CYICHARFTQSGTMKMHILQK 31
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 29.5 bits (67), Expect = 0.018
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C K FS+ L H +H
Sbjct: 5 CLECGKAFSQNSGLINHQRIH 25
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.6 bits (67), Expect = 0.019
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C K FS +L H+ +H
Sbjct: 8 EGCGKRFSLDFNLRTHVRIH 27
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.3 bits (65), Expect = 0.027
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
CE C K FSRK+ L H+ H
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCH 24
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.9 bits (62), Expect = 0.067
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C + F+R + RH +H
Sbjct: 6 CDICGRKFARSDERKRHTKIH 26
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 30.2 bits (68), Expect = 0.11
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 140 LCEFCQKNFSRKEHLNRHL 158
+ +F + F K+ R+
Sbjct: 36 IDDFTLQYFGSKKQYERYR 54
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 29.8 bits (67), Expect = 0.12
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 135 VDITALCEFCQKNFSRKEHLNRHL 158
+ LCEFC K + L +H+
Sbjct: 28 LPKLYLCEFCLKYMKSRTILQQHM 51
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.4 bits (61), Expect = 0.14
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C+ C K+FS L++H H
Sbjct: 15 CDECGKSFSHSSDLSKHRRTH 35
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 26.9 bits (59), Expect = 0.17
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
CE C K F HLNRH H
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSG 30
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
subtilis [TaxId: 1423]}
Length = 177
Score = 29.0 bits (65), Expect = 0.19
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 41 LESVVQRAKDSGVQKII---AIGSSLKSSKEALRLARIYPGMVYSTAGIHPHEAKSWDED 97
+++ + D G++ I+ +G L +++ A L YP + + + K+W E
Sbjct: 31 IKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFYEQEKNWKEP 90
Query: 98 YIDQLRDLVSN 108
+Q +++
Sbjct: 91 NKEQYEAVLAQ 101
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 26.7 bits (59), Expect = 0.20
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 140 LCEFCQKNFSRKEHLNRH 157
C C + F+R++ L RH
Sbjct: 3 PCGLCNRAFTRRDLLIRH 20
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 26.6 bits (58), Expect = 0.21
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 141 CEFCQKNFSRKEHLNRHLWVHKD 163
C C+++F K L+RH VHK+
Sbjct: 3 CGLCERSFVEKSALSRHQRVHKN 25
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 186
Score = 28.5 bits (64), Expect = 0.27
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPG---MVYSTAGIHPHEAKSWDED 97
LE V +RA G++ + + S S + ALRL+ + G V AG +++
Sbjct: 20 LELVGERADQLGIRNFV-VASV--SGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDE 76
Query: 98 YIDQLRDL 105
D L +
Sbjct: 77 ARDALLER 84
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 26.2 bits (58), Expect = 0.36
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 140 LCEFCQKNFSRKEHLNRHL 158
LCEFC K + L +H+
Sbjct: 9 LCEFCLKYMKSRTILQQHM 27
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 28.2 bits (63), Expect = 0.41
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 140 LCEFCQKNFSRKEHLNRHL 158
LCE+C K ++ HL
Sbjct: 33 LCEYCLKYMKYEKSYRFHL 51
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 25.8 bits (56), Expect = 0.44
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 141 CEFCQKNFSRKEHLNRHL-WVHK 162
C FC K F+RK+++ H+ +HK
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIHK 26
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 25.0 bits (54), Expect = 0.70
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 142 EFCQKNFSRKEHLNRHLWVH 161
E C+K F+ HL RH H
Sbjct: 8 EGCEKGFTSLHHLTRHSLTH 27
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 26.6 bits (59), Expect = 1.3
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 41 LESVVQRAKDSGVQKIIAIGSSLKSSKEALRLARIYPGM----VYSTAGIHPHEAKSWDE 96
L V+RAK+ G++ ++ + SS A++ + G+ V G +
Sbjct: 21 LRLAVERAKELGIKHLV-VASS--YGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPP 77
Query: 97 DYIDQLRD----------LVSNTGNSTMNRYNSSQWITEIKQTLFTTF 134
+ ++LR ++S S + I + L + F
Sbjct: 78 EVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLF 125
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.6 bits (53), Expect = 1.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C C F RK+ ++ H+ H
Sbjct: 6 CPVCGLRFKRKDRMSYHVRSH 26
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 25.0 bits (54), Expect = 4.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 96 EDYIDQLRDLVSNTGNSTMNRYNSSQ 121
E +D +R LV + + R+N Q
Sbjct: 166 EQGVDAVRTLVLKGFSGSTERFNLVQ 191
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.7 bits (48), Expect = 4.8
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 140 LCEF--CQKNFSRKEHLNRH 157
C+F C + FS +++LN H
Sbjct: 2 PCDFPGCGRIFSNRQYLNHH 21
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 4.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 140 LCEFCQKNFSRKEHLNRHLWVH 161
+C C K F L RH VH
Sbjct: 4 VCAECGKAFVESSKLKRHQLVH 25
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 248
Score = 25.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 21 DNYVLIDVGANLTNRKFGRDLESVVQRAKDSGVQKIIAIGSSLKS 65
+N + V N + G +ESVV+RA ++G+ I++ + S
Sbjct: 61 NNLLYDIVKENGKDGTIGTVIESVVRRAIEAGI---ISVDKTAPS 102
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.4 bits (47), Expect = 7.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C CQ+ F R+ L H+ H
Sbjct: 7 CSVCQETFRRRMELRLHMVSH 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 22.6 bits (48), Expect = 8.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 141 CEFCQKNFSRKEHLNRHLWVH 161
C K F R+ ++ H+ H
Sbjct: 23 FPGCTKTFKRRYNIRSHIQTH 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.373
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,195
Number of extensions: 25780
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 54
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)