BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4674
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 45 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 101
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 102 HC-----NGKLGSYKINGRTK 117
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 45 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 101
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 102 HC-----NGKLGSYKINGRTK 117
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 103 HC-----NGKLGSYKINGRTK 118
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 103 HC-----NGKLGSYKINGRTK 118
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 51 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 107
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 108 HC-----NGKLGSYKINGRTK 123
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 103 HC-----NGKLGSYKINGRTK 118
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 55 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 114
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 115 RANRMVNNGRMGDFVINGRTK 135
NG++G + INGRTK
Sbjct: 103 HC-----NGKLGSYKINGRTK 118
>pdb|2HH7|A Chain A, Crystal Structure Of Cu(I) Bound Csor From Mycobacterium
Tuberculosis
Length = 119
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 69 QLVSNKSTNKQDLKTIRG--DQITWIDGRETYCSNIGRLISEVDAIIMRANR-MVNN 122
+L + K LKT+RG D I + + YC ++ + IS V + + RANR M++N
Sbjct: 4 ELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN 60
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 151 LPMDRILVESDAPFLYP 167
+P+DR+LVE+D+P+L P
Sbjct: 195 VPLDRLLVETDSPYLAP 211
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
From Deinococcus Radiodurans
Length = 254
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 151 LPMDRILVESDAPFLYPNARAA 172
+P DR+L E+D PFL + +AA
Sbjct: 186 MPRDRVLTETDGPFLELDGQAA 207
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 151 LPMDRILVESDAPFLYP 167
+P +++L+E+DAP+L P
Sbjct: 197 IPAEKLLIETDAPYLLP 213
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 149 GELPMDRILVESDAPFLYPNARAAK 173
G +P R+ +ESDAP+L P + K
Sbjct: 197 GNIPEGRLXLESDAPYLLPRSLRPK 221
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 77 NKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGD 127
NK +L+ I GD++ + G + +L ++ DAI+ A N+ + D
Sbjct: 44 NKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLND 94
>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
Length = 233
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 142 LQGMLESGELPMDRILVESDAPF 164
L+G++E GEL +D I+ D P
Sbjct: 193 LKGLIEQGELKVDSIIAGHDTPI 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,703,716
Number of Sequences: 62578
Number of extensions: 167282
Number of successful extensions: 319
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 15
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)