Query psy4674
Match_columns 173
No_of_seqs 223 out of 1215
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:54:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 99.8 2.5E-21 5.5E-26 165.6 5.2 105 46-173 107-217 (256)
2 KOG3710|consensus 99.8 1.9E-20 4.2E-25 158.6 4.2 108 24-140 36-149 (280)
3 PRK11449 putative deoxyribonuc 99.7 1.2E-16 2.5E-21 135.9 5.8 106 47-173 110-219 (258)
4 PRK10425 DNase TatD; Provision 99.6 3.4E-16 7.4E-21 133.2 5.2 106 47-172 104-214 (258)
5 PRK10812 putative DNAse; Provi 99.6 7.4E-16 1.6E-20 131.5 5.8 108 46-173 106-217 (265)
6 PF01026 TatD_DNase: TatD rela 99.5 4.6E-15 1E-19 124.6 4.4 112 42-173 102-217 (255)
7 KOG3020|consensus 99.4 1.7E-13 3.8E-18 119.7 5.3 111 43-171 127-238 (296)
8 cd00530 PTE Phosphotriesterase 98.8 3.9E-09 8.5E-14 89.1 4.0 85 79-173 154-256 (293)
9 TIGR00010 hydrolase, TatD fami 98.7 1.5E-08 3.3E-13 82.6 5.1 83 79-172 126-212 (252)
10 cd01310 TatD_DNAse TatD like p 98.2 3.3E-06 7.1E-11 68.7 5.5 83 79-172 126-212 (251)
11 TIGR03583 EF_0837 probable ami 95.3 0.0098 2.1E-07 52.1 2.0 73 79-165 183-268 (365)
12 cd01295 AdeC Adenine deaminase 88.3 0.93 2E-05 40.9 5.2 44 124-172 174-221 (422)
13 PF13456 RVT_3: Reverse transc 30.4 33 0.00072 22.8 1.5 12 151-162 19-30 (87)
14 PF14237 DUF4339: Domain of un 26.2 66 0.0014 20.0 2.2 23 53-75 16-38 (45)
15 cd01292 metallo-dependent_hydr 25.8 1E+02 0.0022 24.1 3.7 38 124-165 194-238 (275)
16 KOG3484|consensus 25.0 27 0.0006 25.8 0.3 17 143-161 26-42 (91)
17 PF07066 DUF3882: Lactococcus 24.6 34 0.00075 27.9 0.8 25 142-168 54-78 (159)
18 cd01307 Met_dep_hydrolase_B Me 22.7 85 0.0018 27.1 3.0 48 79-133 167-227 (338)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.5e-21 Score=165.57 Aligned_cols=105 Identities=19% Similarity=0.301 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCC--CccccchhhHHhhhcCccccCCccceeechHH---HHHHHHhhhh
Q psy4674 46 VSFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNK--QDLKTIRGDQITWIDGRETYCSNIGRLISEVD---AIIMRANRMV 120 (173)
Q Consensus 46 ~~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~--~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D---~li~~~~~~h 120 (173)
.+....+|++-.+|-+ +.+.+ .|+|+|.+|.+.+|+.... ..+++||||. +.+++
T Consensus 107 ~~~Q~~~F~~ql~lA~------------~~~lPviIH~R~A~~d~~~iL~~~~~---~~~gi~HcFsGs~e~a~~----- 166 (256)
T COG0084 107 KERQEEVFEAQLELAK------------ELNLPVIIHTRDAHEDTLEILKEEGA---PVGGVLHCFSGSAEEARK----- 166 (256)
T ss_pred HHHHHHHHHHHHHHHH------------HcCCCEEEEccccHHHHHHHHHhcCC---CCCEEEEccCCCHHHHHH-----
Confidence 3457777777777764 11222 6999999999999997522 4566777773 45543
Q ss_pred ccccCCcEE-EecccccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCCCC
Q psy4674 121 NNGRMGDFV-INGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 173 (173)
Q Consensus 121 c~~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~rgk 173 (173)
++++|+|| |+|.+|+++|.++|++++. ||+||||+|||||||+|.|+|||
T Consensus 167 -~~d~G~yisisG~itfk~a~~~~ev~~~--iPldrLL~ETDsPyl~P~p~rGk 217 (256)
T COG0084 167 -LLDLGFYISISGIVTFKNAEKLREVARE--LPLDRLLLETDAPYLAPVPYRGK 217 (256)
T ss_pred -HHHcCeEEEECceeecCCcHHHHHHHHh--CCHhHeEeccCCCCCCCcCCCCC
Confidence 46899999 9999999999999999998 99999999999999999999996
No 2
>KOG3710|consensus
Probab=99.80 E-value=1.9e-20 Score=158.61 Aligned_cols=108 Identities=36% Similarity=0.577 Sum_probs=92.8
Q ss_pred chhhhhhhhhhhcc--cccccccch----hHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccc
Q psy4674 24 GLALKGVFAFQKRK--TKHKCASLV----SFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRET 97 (173)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~c~~~~----~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~ 97 (173)
.+++.-++.++... .-..|...+ +.|.+|++||++||+.|.|+|||||++++.. +|++|+|+|+|++|.|+
T Consensus 36 ~~~~~~~~e~ivp~mne~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~~---~k~iRgd~i~wi~G~e~ 112 (280)
T KOG3710|consen 36 LLRLRLALEYIVPCMNEYGICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDAFH---SKDIRGDKITWVGGNEP 112 (280)
T ss_pred chHHHHHHHHhhhhhhhcceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcCCc---chhhccCCceEecCCCC
Confidence 34555566665443 344555543 8899999999999999999999999987654 89999999999999999
Q ss_pred cCCccceeechHHHHHHHHhhhhccccCCcEEEecccccCCch
Q psy4674 98 YCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDSSEA 140 (173)
Q Consensus 98 ~c~~Ig~L~h~~D~li~~~~~~hc~~~LG~YiI~G~ttam~A~ 140 (173)
+|+.|+.|++.+|.++ +||++++|.|+++ |+++|+||
T Consensus 113 gc~~i~~L~s~~d~~i-----~h~~~r~~~~~~g-RtkAMVAc 149 (280)
T KOG3710|consen 113 GCETIMLLPSPIDSVI-----LHCNGRLGSYIIG-RTKAMVAC 149 (280)
T ss_pred Cccceeeecccchhhh-----hhhcccccccccc-ceeEEEEE
Confidence 9999999999999999 8999999999986 99999998
No 3
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=99.65 E-value=1.2e-16 Score=135.86 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccccCCccceeechHH---HHHHHHhhhhccc
Q psy4674 47 SFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVD---AIIMRANRMVNNG 123 (173)
Q Consensus 47 ~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D---~li~~~~~~hc~~ 123 (173)
+....||+...+|-.. -++.. -.|+|++.+|.+.++..... ..+.++|||. +.+++ ++
T Consensus 110 ~~Q~~vf~~ql~lA~~---------~~~Pv-~iH~r~a~~~~~~il~~~~~---~~~~i~H~fsG~~~~a~~------~l 170 (258)
T PRK11449 110 ERQQWLLDEQLKLAKR---------YDLPV-ILHSRRTHDKLAMHLKRHDL---PRTGVVHGFSGSLQQAER------FV 170 (258)
T ss_pred HHHHHHHHHHHHHHHH---------hCCCE-EEEecCccHHHHHHHHhcCC---CCCeEEEcCCCCHHHHHH------HH
Confidence 4566777777666531 01111 15999999999999986311 1245778773 45543 46
Q ss_pred cCCcEE-EecccccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCCCC
Q psy4674 124 RMGDFV-INGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 173 (173)
Q Consensus 124 ~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~rgk 173 (173)
++|+|+ |+|.++++++.+++++++. +|+||||+|||+|||+|.|+|||
T Consensus 171 ~~G~~iS~~g~it~~~~~~~~~~~~~--ipldriL~ETD~P~l~p~~~~~~ 219 (258)
T PRK11449 171 QLGYKIGVGGTITYPRASKTRDVIAK--LPLASLLLETDAPDMPLNGFQGQ 219 (258)
T ss_pred HCCCEEEeCccccccCcHHHHHHHHh--CChhhEEEecCCCCCCCCCCCCC
Confidence 899999 9999888888999999998 99999999999999999999986
No 4
>PRK10425 DNase TatD; Provisional
Probab=99.62 E-value=3.4e-16 Score=133.24 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccccCCccceeechHH---HHHHHHhhhhccc
Q psy4674 47 SFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVD---AIIMRANRMVNNG 123 (173)
Q Consensus 47 ~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D---~li~~~~~~hc~~ 123 (173)
+....||+...+|-.. -++ +--.|+|++.+|.+.+|....+. ..+.++|+|. +.+++ ++
T Consensus 104 ~~Q~~vF~~ql~lA~~---------~~~-Pv~iH~r~a~~~~l~iL~~~~~~--~~~~i~H~fsG~~~~~~~------~l 165 (258)
T PRK10425 104 EEQERAFVAQLAIAAE---------LNM-PVFMHCRDAHERFMALLEPWLDK--LPGAVLHCFTGTREEMQA------CL 165 (258)
T ss_pred HHHHHHHHHHHHHHHH---------hCC-CeEEEEeCchHHHHHHHHHhccC--CCCeEEEecCCCHHHHHH------HH
Confidence 4456777777777531 011 11259999999999999863111 1246778873 44443 35
Q ss_pred cCCcEE-Eecc-cccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCCC
Q psy4674 124 RMGDFV-INGR-TKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAA 172 (173)
Q Consensus 124 ~LG~Yi-I~G~-ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~rg 172 (173)
++|+|+ |+|. ++++++.+++++++. +|+||||+|||||||+|.|+||
T Consensus 166 ~~G~~~si~g~i~~~~~~~~~~~~~~~--ipldrlLlETDaP~l~P~~~~~ 214 (258)
T PRK10425 166 ARGLYIGITGWVCDERRGLELRELLPL--IPAERLLLETDAPYLLPRDLTP 214 (258)
T ss_pred HCCCEEEECceeecccccHHHHHHHHh--CChHHEEEeccCCCCCCCCcCC
Confidence 799999 9994 455656789999998 9999999999999999999976
No 5
>PRK10812 putative DNAse; Provisional
Probab=99.60 E-value=7.4e-16 Score=131.55 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccccCCccceeechH---HHHHHHHhhhhcc
Q psy4674 46 VSFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEV---DAIIMRANRMVNN 122 (173)
Q Consensus 46 ~~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~---D~li~~~~~~hc~ 122 (173)
-+...+||+...+|... -++.. -.|+|++..|.+.+|.... -...+.++||| .+.+++ +
T Consensus 106 ~~~Q~~vf~~ql~lA~e---------~~~Pv-~iH~r~a~~~~l~iL~~~~--~~~~~~v~H~fsG~~~~a~~------~ 167 (265)
T PRK10812 106 KVRQQESFRHHIQIGRE---------LNKPV-IVHTRDARADTLAILREEK--VTDCGGVLHCFTEDRETAGK------L 167 (265)
T ss_pred HHHHHHHHHHHHHHHHH---------hCCCe-EEEeeCchHHHHHHHHhhc--CCCCCEEEEeecCCHHHHHH------H
Confidence 46677888888777651 01111 1599999999999998531 11224567776 244543 3
Q ss_pred ccCCcEE-EecccccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCCCC
Q psy4674 123 GRMGDFV-INGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 173 (173)
Q Consensus 123 ~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~rgk 173 (173)
.++|+|+ |+|..+++++..++++++. +|+||||+||||||++|.|+|||
T Consensus 168 ~~~G~~is~~g~~t~~~~~~~~~~~~~--ipldrlLlETD~P~~~p~~~~g~ 217 (265)
T PRK10812 168 LDLGFYISFSGIVTFRNAEQLRDAARY--VPLDRLLVETDSPYLAPVPHRGK 217 (265)
T ss_pred HHCCCEEEECeeeecCccHHHHHHHHh--CChhhEEEecCCCCCCCcCCCCC
Confidence 5899999 9998888888899999998 99999999999999999999986
No 6
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=99.54 E-value=4.6e-15 Score=124.60 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=82.2
Q ss_pred cccchhHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccccCCccceeechHH---HHHHHHhh
Q psy4674 42 CASLVSFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVD---AIIMRANR 118 (173)
Q Consensus 42 c~~~~~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D---~li~~~~~ 118 (173)
+....+.-..||++..+|-.. -++. --.|+|.+.+|.+.++.... -+....++|+|. +.+++
T Consensus 102 ~~~~~~~Q~~vF~~ql~lA~~---------~~~p-v~iH~r~a~~~~l~il~~~~--~~~~~~i~H~f~g~~~~~~~--- 166 (255)
T PF01026_consen 102 NEEDKEVQEEVFERQLELAKE---------LNLP-VSIHCRKAHEELLEILKEYG--PPNLRVIFHCFSGSPEEAKK--- 166 (255)
T ss_dssp SSSGHHHHHHHHHHHHHHHHH---------HTCE-EEEEEESHHHHHHHHHHHTT--GGTSEEEETT--S-HHHHHH---
T ss_pred cCCcHHHHHHHHHHHHHHHHH---------hCCc-EEEecCCcHHHHHHHHHhcc--ccceeEEEecCCCCHHHHHH---
Confidence 444567888899888888741 0111 12599999999999998752 123377888874 34432
Q ss_pred hhccccCCcEE-EecccccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCCCC
Q psy4674 119 MVNNGRMGDFV-INGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 173 (173)
Q Consensus 119 ~hc~~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~rgk 173 (173)
+.++|+|+ |+|.++++.+.+.+++++. +|+||||||||+||++|.|+||+
T Consensus 167 ---~~~~g~~~S~~~~~~~~~~~~~~~~~~~--ip~drillETD~P~~~~~~~~~~ 217 (255)
T PF01026_consen 167 ---FLDLGCYFSFSGAITFKNSKKVRELIKA--IPLDRILLETDAPYLAPDPYRGK 217 (255)
T ss_dssp ---HHHTTEEEEEEGGGGSTTSHHHHHHHHH--S-GGGEEEE-BTTSSECTTSTTS
T ss_pred ---HHhcCceEEecccccccccHHHHHHHhc--CChhhEEEcCCCCcCCccccCCC
Confidence 34789999 9997777767789999998 99999999999999999999985
No 7
>KOG3020|consensus
Probab=99.41 E-value=1.7e-13 Score=119.68 Aligned_cols=111 Identities=16% Similarity=0.247 Sum_probs=83.4
Q ss_pred ccchhHHHHHHHHHHhhhhcCCCCCCeeeeCCCCCCCccccchhhHHhhhcCccccCCccceeechHHHHHHHHhhhhcc
Q psy4674 43 ASLVSFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNN 122 (173)
Q Consensus 43 ~~~~~~g~~Vl~eV~~L~~~G~f~dGqLv~~~~~~~~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D~li~~~~~~hc~ 122 (173)
.+..+.+..|++.-.+|-.. .+.+.-.|+|++.+|.+.++...-+.|.. +.++|||+..++.+.+ .
T Consensus 127 ~~~~~~Qk~vFekQl~LA~~----------~~~Pl~iH~r~a~~d~~eIl~~~~~~~~~-~vvvHsFtGs~e~~~~---~ 192 (296)
T KOG3020|consen 127 FSDKEEQKTVFEKQLDLAKR----------LKLPLFIHCRSAHEDLLEILKRFLPECHK-KVVVHSFTGSAEEAQK---L 192 (296)
T ss_pred cCChHHHHHHHHHHHHHHHH----------ccCCeeeechhhhHHHHHHHHHhccccCC-ceEEEeccCCHHHHHH---H
Confidence 55679999999999999852 23333369999999999999975444543 6777887644443322 3
Q ss_pred ccCCcEE-EecccccCCchhhhhhhhcCCCCCCceEeecCCCCCCCCCCC
Q psy4674 123 GRMGDFV-INGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARA 171 (173)
Q Consensus 123 ~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPldrlllETDaP~l~P~p~r 171 (173)
+++|.|| |+|....|. .-.++++. ||+||||+||||||+-|.+..
T Consensus 193 lk~~~yig~~g~~~k~~--e~~~vlr~--iP~erlllETDsP~~~pk~~~ 238 (296)
T KOG3020|consen 193 LKLGLYIGFTGCSLKTE--ENLEVLRS--IPLERLLLETDSPYCGPKPSS 238 (296)
T ss_pred HHccEEecccceeeech--hhHHHHhh--CCHhHeeeccCCccccCCccc
Confidence 4788999 999555554 44678887 999999999999999998853
No 8
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.80 E-value=3.9e-09 Score=89.07 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=59.8
Q ss_pred Ccccc---chhhHHhhhcCccccCCcc-ceeechH----HHHHHHHhhhhccccCCcEE-EecccccC---------Cch
Q psy4674 79 QDLKT---IRGDQITWIDGRETYCSNI-GRLISEV----DAIIMRANRMVNNGRMGDFV-INGRTKDS---------SEA 140 (173)
Q Consensus 79 ~HsR~---ar~D~I~wL~g~e~~c~~I-g~L~h~~----D~li~~~~~~hc~~~LG~Yi-I~G~ttam---------~A~ 140 (173)
.|+|+ +..|.+.++... +...- ..+.|++ .+.+.+ +.++|+|+ |+|..++. .+.
T Consensus 154 iH~~~~~~~~~~~l~~l~~~--g~~~~~~vi~H~~~~~~~~~~~~------~~~~G~~i~~~~~~~~~~~~~~~~~~~~~ 225 (293)
T cd00530 154 THTQAGLTMGLEQLRILEEE--GVDPSKVVIGHLDRNDDPDYLLK------IAALGAYLEFDGIGKDKIFGYPSDETRAD 225 (293)
T ss_pred EcCCCCccccHHHHHHHHHc--CCChhheEEeCCCCCCCHHHHHH------HHhCCCEEEeCCCCcccccCCCCHHHHHH
Confidence 37876 788888888742 11111 1233553 134432 34789999 99966554 456
Q ss_pred hhhhhhhcCCCCCCceEeecCCCCCCCCCCCCC
Q psy4674 141 GLQGMLESGELPMDRILVESDAPFLYPNARAAK 173 (173)
Q Consensus 141 ~l~~~~~~~~iPldrlllETDaP~l~P~p~rgk 173 (173)
.++++++. +|+||||+|||+||++|.|+||+
T Consensus 226 ~l~~~~~~--~~~d~ill~TD~p~~~~~~~~~~ 256 (293)
T cd00530 226 AVKALIDE--GYGDRLLLSHDVFRKSYLEKRYG 256 (293)
T ss_pred HHHHHHHC--CCcCCEEEeCCcCchhhhhhccC
Confidence 78999988 99999999999999999877764
No 9
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.72 E-value=1.5e-08 Score=82.62 Aligned_cols=83 Identities=18% Similarity=0.403 Sum_probs=57.2
Q ss_pred CccccchhhHHhhhcCccccCCccceeechH---HHHHHHHhhhhccccCCcEE-EecccccCCchhhhhhhhcCCCCCC
Q psy4674 79 QDLKTIRGDQITWIDGRETYCSNIGRLISEV---DAIIMRANRMVNNGRMGDFV-INGRTKDSSEAGLQGMLESGELPMD 154 (173)
Q Consensus 79 ~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~---D~li~~~~~~hc~~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPld 154 (173)
.|++.+..+.+.++....+ ....++|++ .+.+.+ ..++|.|+ +++...+..+..++++++. +|.|
T Consensus 126 iH~~~~~~~~~~~l~~~~~---~~~~i~H~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~i~~--~~~d 194 (252)
T TIGR00010 126 IHARDAEEDVLDILREEKP---KVGGVLHCFTGDAELAKK------LLDLGFYISISGIVTFKNAKSLREVVRK--IPLE 194 (252)
T ss_pred EEecCccHHHHHHHHhcCC---CCCEEEEccCCCHHHHHH------HHHCCCeEeeceeEecCCcHHHHHHHHh--CCHH
Confidence 4677776777777764311 223344544 234432 23679999 9985555555678899987 9999
Q ss_pred ceEeecCCCCCCCCCCCC
Q psy4674 155 RILVESDAPFLYPNARAA 172 (173)
Q Consensus 155 rlllETDaP~l~P~p~rg 172 (173)
|||+|||+||+.|.+++|
T Consensus 195 ril~~TD~p~~~~~~~~~ 212 (252)
T TIGR00010 195 RLLVETDSPYLAPVPYRG 212 (252)
T ss_pred HeEecccCCCCCCCCCCC
Confidence 999999999999887775
No 10
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.16 E-value=3.3e-06 Score=68.67 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=54.6
Q ss_pred CccccchhhHHhhhcCccccCCccceeechHH---HHHHHHhhhhccccCCcEE-EecccccCCchhhhhhhhcCCCCCC
Q psy4674 79 QDLKTIRGDQITWIDGRETYCSNIGRLISEVD---AIIMRANRMVNNGRMGDFV-INGRTKDSSEAGLQGMLESGELPMD 154 (173)
Q Consensus 79 ~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D---~li~~~~~~hc~~~LG~Yi-I~G~ttam~A~~l~~~~~~~~iPld 154 (173)
.|+...-.+.+.++.... .....++|++. +.+.+ ..+.|.|+ +++......+..++++++. +|.|
T Consensus 126 iH~~~~~~~~~~l~~~~~---~~~~~i~H~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~d 194 (251)
T cd01310 126 IHSRDAHEDVLEILKEYG---PPKRGVFHCFSGSAEEAKE------LLDLGFYISISGIVTFKNANELREVVKE--IPLE 194 (251)
T ss_pred EEeeCchHHHHHHHHhcC---CCCCEEEEccCCCHHHHHH------HHHcCCEEEeeeeeccCCCHHHHHHHHh--CChH
Confidence 366666566666666531 13344555551 23332 23579999 9885444444568899987 9999
Q ss_pred ceEeecCCCCCCCCCCCC
Q psy4674 155 RILVESDAPFLYPNARAA 172 (173)
Q Consensus 155 rlllETDaP~l~P~p~rg 172 (173)
|||+|||+||+.+...+|
T Consensus 195 ril~~TD~p~~~~~~~~~ 212 (251)
T cd01310 195 RLLLETDSPYLAPVPFRG 212 (251)
T ss_pred HEEEcccCCCCCCCCCCC
Confidence 999999999998766433
No 11
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=95.28 E-value=0.0098 Score=52.11 Aligned_cols=73 Identities=7% Similarity=-0.013 Sum_probs=45.5
Q ss_pred CccccchhhHHhhhcCccccCCccceeechHH-----------HHHHHHhhhhccccCCcEE-Ee-cccccCCchhhhhh
Q psy4674 79 QDLKTIRGDQITWIDGRETYCSNIGRLISEVD-----------AIIMRANRMVNNGRMGDFV-IN-GRTKDSSEAGLQGM 145 (173)
Q Consensus 79 ~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~D-----------~li~~~~~~hc~~~LG~Yi-I~-G~ttam~A~~l~~~ 145 (173)
.|.|++..|...++.....+ ..+-|+++.+. +.+.. ..++|+|+ |+ |..+++. +....
T Consensus 183 vH~~~a~~~~~~i~~~~~~g-~~~~H~fng~~~~~~r~~g~~~~~~~~------~l~~G~i~d~~hg~~~~~~--~~~~~ 253 (365)
T TIGR03583 183 VHIGSAPPELDEILALMEKG-DVLTHCFNGKPNGILRETGEVKPSVLE------AYNRGVILDVGHGTASFSF--HVAEK 253 (365)
T ss_pred EEeCCCccCHHHHHHHhcCC-CeeeeeecCCCCCCCCCcchHHHHHHH------HHhCeEEEEeCCCCCCchH--HHHHH
Confidence 58888888888888764333 33445554432 23321 35789999 88 7766632 22222
Q ss_pred hhcCCCCCCceEeecCCCCC
Q psy4674 146 LESGELPMDRILVESDAPFL 165 (173)
Q Consensus 146 ~~~~~iPldrlllETDaP~l 165 (173)
+ .-+++++|||+||+
T Consensus 254 ~-----~~~~~~~~td~~d~ 268 (365)
T TIGR03583 254 A-----KRAGIFPDTISTDI 268 (365)
T ss_pred H-----HhCCCCCccccccc
Confidence 2 23578899999998
No 12
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=88.28 E-value=0.93 Score=40.86 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.3
Q ss_pred cCCcEE-EecccccCCchhhhhhhhcCCCC---CCceEeecCCCCCCCCCCCC
Q psy4674 124 RMGDFV-INGRTKDSSEAGLQGMLESGELP---MDRILVESDAPFLYPNARAA 172 (173)
Q Consensus 124 ~LG~Yi-I~G~ttam~A~~l~~~~~~~~iP---ldrlllETDaP~l~P~p~rg 172 (173)
++|.|+ |.+... +..++++++. +| .++++++||+|+..|.+.+|
T Consensus 174 ~~G~~i~i~~g~~---~~~~~~~~~~--l~~~~~~~i~l~TD~~~~~~~~~~g 221 (422)
T cd01295 174 RLGMYVMLREGSI---AKNLEALLPA--ITEKNFRRFMFCTDDVHPDDLLSEG 221 (422)
T ss_pred HCCCEEEEECccc---HhhHHHHHHh--hhhccCCeEEEEcCCCCchhhhhcc
Confidence 689999 874222 3356777776 77 69999999998654443344
No 13
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=30.43 E-value=33 Score=22.75 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=9.5
Q ss_pred CCCCceEeecCC
Q psy4674 151 LPMDRILVESDA 162 (173)
Q Consensus 151 iPldrlllETDa 162 (173)
.-..+|.+|||+
T Consensus 19 ~g~~~i~v~sDs 30 (87)
T PF13456_consen 19 LGIRKIIVESDS 30 (87)
T ss_dssp CT-SCEEEEES-
T ss_pred CCCCEEEEEecC
Confidence 789999999997
No 14
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=26.22 E-value=66 Score=19.99 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHhhhhcCCCCCCeeeeCCC
Q psy4674 53 LHEVLGMYHSGVFKDGQLVSNKS 75 (173)
Q Consensus 53 l~eV~~L~~~G~f~dGqLv~~~~ 75 (173)
++|+++|.++|.+...-+|=..+
T Consensus 16 ~~el~~l~~~g~i~~~tlvw~~g 38 (45)
T PF14237_consen 16 LEELRQLISSGEIDPDTLVWKEG 38 (45)
T ss_pred HHHHHHHHHcCCCCCCCeEeCCC
Confidence 58999999999998888875443
No 15
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=25.80 E-value=1e+02 Score=24.14 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=25.1
Q ss_pred cCCcEE-Eeccccc------CCchhhhhhhhcCCCCCCceEeecCCCCC
Q psy4674 124 RMGDFV-INGRTKD------SSEAGLQGMLESGELPMDRILVESDAPFL 165 (173)
Q Consensus 124 ~LG~Yi-I~G~tta------m~A~~l~~~~~~~~iPldrlllETDaP~l 165 (173)
+.|.++ ++..... .....++++++.+ .++++.||+|+.
T Consensus 194 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~lgTD~~~~ 238 (275)
T cd01292 194 EAGVSLEVCPLSNYLLGRDGEGAEALRRLLELG----IRVTLGTDGPPH 238 (275)
T ss_pred HcCCeEEECCcccccccCCcCCcccHHHHHHCC----CcEEEecCCCCC
Confidence 458888 7663321 1123567777652 799999999986
No 16
>KOG3484|consensus
Probab=24.99 E-value=27 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=14.3
Q ss_pred hhhhhcCCCCCCceEeecC
Q psy4674 143 QGMLESGELPMDRILVESD 161 (173)
Q Consensus 143 ~~~~~~~~iPldrlllETD 161 (173)
+++++. ||.+|||.||.
T Consensus 26 k~~~K~--vPk~rllsE~E 42 (91)
T KOG3484|consen 26 KEVAKL--VPKNRLLSETE 42 (91)
T ss_pred HHHHhh--CCccccccHHH
Confidence 467776 99999999986
No 17
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=24.62 E-value=34 Score=27.86 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=12.7
Q ss_pred hhhhhhcCCCCCCceEeecCCCCCCCC
Q psy4674 142 LQGMLESGELPMDRILVESDAPFLYPN 168 (173)
Q Consensus 142 l~~~~~~~~iPldrlllETDaP~l~P~ 168 (173)
|+.++.+-.+|-.-|.||+ |+|.|.
T Consensus 54 Lk~ii~~~d~~~y~i~IE~--~vmg~N 78 (159)
T PF07066_consen 54 LKTIIQKYDLKFYIIVIEK--PVMGPN 78 (159)
T ss_pred HHHHHHHhCCCcceEEEec--cccccc
Confidence 4444443345555566664 555553
No 18
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.73 E-value=85 Score=27.10 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=27.4
Q ss_pred CccccchhhHHhhhcCccccCCccceeechH-----H------HHHHHHhhhhccccCCcEE-Ee-cc
Q psy4674 79 QDLKTIRGDQITWIDGRETYCSNIGRLISEV-----D------AIIMRANRMVNNGRMGDFV-IN-GR 133 (173)
Q Consensus 79 ~HsR~ar~D~I~wL~g~e~~c~~Ig~L~h~~-----D------~li~~~~~~hc~~~LG~Yi-I~-G~ 133 (173)
.|.+++..+...++...+++ ..+-|+++.. + +.+.+ +.+.|.|+ |+ |.
T Consensus 167 vH~~~~~~~~~~~~~~l~~g-~~~~H~~~g~~~~~~~~~~~~~~~~~~------~~~~G~~~d~~~G~ 227 (338)
T cd01307 167 VHIGSPPPILDEVVPLLRRG-DVLTHCFNGKPNGIVDEEGEVLPLVRR------ARERGVIFDVGHGT 227 (338)
T ss_pred EEeCCCCCCHHHHHHHhcCC-CEEEeccCCCCCCCCCCCCcHHHHHHH------HHhCCEEEEeCCCC
Confidence 48888888877777643333 2344444321 1 23322 34789999 87 54
Done!