RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4674
(173 letters)
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Length = 247
Score = 52.1 bits (124), Expect = 9e-09
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 8/85 (9%)
Query: 51 AVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVD 110
+ EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D
Sbjct: 42 QIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMD 98
Query: 111 AIIMRANRMVNNGRMGDFVINGRTK 135
+I N ++G + INGRTK
Sbjct: 99 DLIRHCNG-----KLGSYKINGRTK 118
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 39.6 bits (93), Expect = 2e-04
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 150 ELPMDRILVESDAPFLYPNARAAK 173
+P +++++E+DAP+ + A
Sbjct: 208 SIPSEKLMIETDAPWCGVKSTHAG 231
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 39.0 bits (92), Expect = 3e-04
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 150 ELPMDRILVESDAPFLYP 167
+P +++L+E+DAP+L P
Sbjct: 196 LIPAEKLLIETDAPYLLP 213
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 39.1 bits (92), Expect = 3e-04
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 ELPMDRILVESDAPFLYP 167
+P R+++ESDAP+L P
Sbjct: 198 NIPEGRLMLESDAPYLLP 215
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 37.4 bits (86), Expect = 0.001
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 150 ELPMDRILVESDAPFLYPNARAAK 173
++P +R+L+E+DAP+ A
Sbjct: 292 QIPTERLLLETDAPWCEIKRTHAS 315
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 37.1 bits (87), Expect = 0.001
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 150 ELPMDRILVESDAPFLYP 167
+P+DR+LVE+D+P+L P
Sbjct: 194 YVPLDRLLVETDSPYLAP 211
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 37.1 bits (87), Expect = 0.001
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 150 ELPMDRILVESDAPFLYP 167
+P DR+L E+D PFL
Sbjct: 185 SMPRDRVLTETDGPFLEL 202
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 37.1 bits (87), Expect = 0.001
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 150 ELPMDRILVESDAPFLYP 167
+ M+R+LVE+DAP+L P
Sbjct: 193 HVSMERLLVETDAPYLSP 210
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 36.8 bits (86), Expect = 0.001
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 150 ELPMDRILVESDAPFLYPN 168
+LP+ I +E+D+P L P
Sbjct: 205 QLPLTSICLETDSPALGPE 223
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 36.7 bits (86), Expect = 0.002
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 150 ELPMDRILVESDAPFLYP 167
+ ++ I++E+D PFL P
Sbjct: 203 RVGLEYIVLETDCPFLPP 220
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 37.0 bits (86), Expect = 0.002
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 150 ELPMDRILVESDAPFLYP 167
++P++R+ +E+D P+
Sbjct: 236 QIPIERLHIETDCPYCGI 253
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 36.3 bits (85), Expect = 0.002
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 150 ELPMDRILVESDAPFLYP 167
+LP+ +L+E+DAP +
Sbjct: 196 KLPLASLLLETDAPDMPL 213
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 34.3 bits (79), Expect = 0.011
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 150 ELPMDRILVESDAPFL 165
E +R ++ SDA +
Sbjct: 196 EHGPERFMLNSDAGYR 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.71
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 31 FAFQKRKTKHKCASL--VSFSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQ 88
F F ++K +H + + L + L Y + N ++ + I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICD------NDPKYERLVNAI---- 548
Query: 89 ITWIDGRETYC-----SNIGR--LISEVDAIIMRANRMV 120
+ ++ E +++ R L++E +AI A++ V
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Length = 357
Score = 27.9 bits (62), Expect = 2.1
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 138 SEAGLQGMLESGELPMDRILVESDAPFLYPNARAA 172
++ + + E+ +DRIL +D P++ P
Sbjct: 295 TKPQFDLVKK--EVGIDRILYAADYPYIEPEKLGV 327
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 27.0 bits (60), Expect = 3.2
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 138 SEAGLQGMLESGELPMDRILVESDAPF 164
+ L+ ++ + DR+++ SD PF
Sbjct: 273 NPGALELLVS--VMGEDRVMLGSDYPF 297
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 27.0 bits (60), Expect = 3.3
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 138 SEAGLQGMLESGELPMDRILVESDAPF 164
L + E+ DRIL +D PF
Sbjct: 266 RTQTLIDAIL--EIGADRILFSTDWPF 290
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 27.1 bits (60), Expect = 3.4
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 138 SEAGLQGMLESGELPMDRILVESDAPF 164
L+ + + + D++++ +D PF
Sbjct: 270 DPLSLKLLTD--VIGKDKVILGTDYPF 294
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN;
2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Length = 307
Score = 26.2 bits (58), Expect = 5.2
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 138 SEAGLQGMLESGELPMDRILVESDAPFLYP 167
L ++ + +L SD P+
Sbjct: 245 LPRQLPTLMS--LAQPEHLLYGSDIPYTPL 272
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 25.4 bits (56), Expect = 9.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 102 IGRLISEVDAIIMRANRMVNNG 123
+G ++ + D +I+ A +V NG
Sbjct: 183 VGYIMEKADLVIVGAEGVVENG 204
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 25.6 bits (57), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 25 LALKGVFAFQKRKTKH 40
LA+KG F ++K KH
Sbjct: 100 LAIKGAANFYQKKGKH 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,517,209
Number of extensions: 136855
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 28
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)