RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4674
         (173 letters)



>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 31.8 bits (71), Expect = 0.028
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 150 ELPMDRILVESDAPFLYP 167
              ++R+++  D      
Sbjct: 231 RGLLNRVMLSMDITRRSH 248


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
           {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 26.5 bits (57), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 150 ELPMDRILVESDAPFLYPNARAAK 173
            +P+DR+LVE+D+P+L P     K
Sbjct: 194 YVPLDRLLVETDSPYLAPVPHRGK 217


>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
           {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 26.5 bits (57), Expect = 1.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 150 ELPMDRILVESDAPFLYPNARAAK 173
            +P +++L+E+DAP+L P     K
Sbjct: 192 LIPAEKLLIETDAPYLLPRDLTPK 215


>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
           {Pseudomonas diminuta [TaxId: 293]}
          Length = 331

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 150 ELPMDRILVESDAPFLYP 167
           +  M +ILV +D  F + 
Sbjct: 256 QGYMKQILVSNDWLFGFS 273


>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193
           {Anabaena variabilis [TaxId: 1172]}
          Length = 128

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 54  HEVLGMY----HSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEV 109
           HE+L  Y     +G F   Q     S N + L  I G+ +   +    +   +   ++EV
Sbjct: 6   HEILKKYFLSFETGDFSQVQF----SCNLEFLSPISGNTLKGTEEVIPFLKGVTTRVAEV 61

Query: 110 D 110
           +
Sbjct: 62  N 62


>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 25.3 bits (54), Expect = 4.9
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 69  QLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMR-ANRMVNNGRMGD 127
           Q+      N   +  IR       +   T      R +    +     A + ++ G +  
Sbjct: 117 QIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFL-- 174

Query: 128 FVINGRTKDSSEAGLQGMLESGELPMDRILVESDAPFLYPNARAAK 173
             I G         L+ +++   + ++ I++E+D PFL P     K
Sbjct: 175 LGIGGPVTYPKNEALREVVK--RVGLEYIVLETDCPFLPPQPFRGK 218


>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde
           decarboxylase NbaD {Pseudomonas fluorescens [TaxId:
           294]}
          Length = 331

 Score = 24.4 bits (51), Expect = 8.1
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 94  GRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDSSEAGLQGMLESGELPM 153
           G  ++   +GR+ +      +                   +   +   L+ ++    +  
Sbjct: 227 GGGSFAFLLGRVDNAWRHRDIVREDCPRPPSEYVDRFFVDSAVFNPGALELLVS--VMGE 284

Query: 154 DRILVESDAPFLYPNARAAK 173
           DR+++ SD PF     +   
Sbjct: 285 DRVMLGSDYPFPLGEQKIGG 304


>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein
          Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 23.2 bits (50), Expect = 9.3
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 20 SQPVGLALKGVFAFQKRKTKHKC 42
           Q  G  + GVF   K+    K 
Sbjct: 8  KQASGNIVYGVFMLHKKTVNQKT 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,957
Number of extensions: 24134
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)