BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4681
(1930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 337 AKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCD 396
++F S + +A G K + C C +++ + L H + H ++ YKC
Sbjct: 2 SEFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHT-------GEKPYKCP 53
Query: 397 KCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGERPVCCHICGK 454
+C K F ++ ++ +H+ G+K Y C CG ++NL+AH R HTGE+P C CGK
Sbjct: 54 ECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 455 KLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAA 512
L+ H THTGE+P+ C CG ++ + L H R HTGE+PY C CG SF+
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 513 RPAFNLHLKRHT 524
R A N+H + HT
Sbjct: 174 RDALNVHQRTHT 185
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 90/174 (51%), Gaps = 11/174 (6%)
Query: 975 KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWV 1034
K + C CG ++ HL H+ H +GE P +KCP C K F++ L +H
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTH---TGEKP----YKCPECGKSFSDKKDLTRHQRTH 72
Query: 1035 HGNKCHICKVCGAKI--KGNLQQHMETHSGEKKICCHICGKKLR--GRLNEHMLTHTGER 1090
G K + C CG + NL+ H TH+GEK C CGK L H THTGE+
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 1091 PYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
PY C CG SF + L H R H GE+P+ C ECG+SF+ R A ++H + H G
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRA 389
+ C CG F H+A+H +HTG K + C C +++ + L RH + H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------G 74
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVK--SNLKAHMRIHTGERPV 447
++ YKC +C K F +++ + H+ G+K Y C CG ++L+AH R HTGE+P
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 448 CCHICGKKL--RGKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
C CGK L H THTGE+P+ C CG ++ + L VH R HTG++
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 85/180 (47%), Gaps = 10/180 (5%)
Query: 1062 GEKKICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
GEK C CGK L EH THTGE+PY C CG SF DK L H R H GE+P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 1120 FTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVH 1179
+ C ECG+SF+ R+ H + H G C EC F HL +H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPY--------ACPECGKSFSQLAHLRAHQRTHT 129
Query: 1180 GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVT 1239
G P+ C C K F+ + NL H + + + ++C C K+F+ + + H + H T
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 634 PPSKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGER 691
P K CP C K F R+ L +H G K + C CG K L H HTGE+
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 692 KYCCHICGKKM--RGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMC 749
Y C CGK R L+ H THTGE+PYAC CG +F +L H R H GE+PY C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 750 SECGQSFAARSAFSLHLKKHAGFKQTIECEYCHNTFTFETGL 791
ECG+SF+ H + H G K +C C +F+ L
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEK-PYKCPECGKSFSRRDAL 177
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 574 DQKIECNICGALFATKYTLQDHMNTHTGNKYKCDVCDNGYSSXXXXXXXXXXXXQENGEL 633
++ C CG F+ L +H THTG K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEK------------------------------ 48
Query: 634 PPSKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGER 691
KCP C K F L +H G K + C CG + +L+ H HTGE+
Sbjct: 49 ----PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 692 KYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMC 749
Y C CGK L+ H THTGE+PY C CG +F + L H R H GE+PY C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 750 SECGQSFAARSAFSLHLKKHAGFKQT 775
ECG+SF+ R A ++H + H G K +
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 1002 ESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHMET 1059
E GE P + CP C K F+ + L +H G K + C CG K +L +H T
Sbjct: 16 EPGEKP----YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 1060 HSGEKKICCHICGKKL--RGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
H+GEK C CGK R L H THTGE+PYAC CG SF ++LR H R H GE
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 1118 RPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
+P+ C ECG+SF+ H + H G + C EC F L+ H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYK--------CPECGKSFSRRDALNVH 180
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 381 LREAGVLRADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHM 438
+ +A + ++ Y C +C K F + +H+ G+K Y C CG K +L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 439 RIHTGERPVCCHICGKKL--RGKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHT 496
R HTGE+P C CGK R L+ H THTGE+P+ C CG ++ +L H R HT
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 497 GERPYVCNYCGHSFAARPAFNLHLKRHTERGDVRHIECQHSL 538
GE+PY C CG SF+ + H + HT + EC S
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 1/166 (0%)
Query: 1158 CKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNIC 1217
C EC F S HL H G P+ C C K F+ K +LT H + + + ++C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 1218 LKTFNFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKG 1277
K+F+ + + + H + H Y C C K+ S L+ H H + + C CGK
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYA-CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 1278 FIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
F ++ L H+R HTG KPY C C K F+++ LN+H++ H K
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 2/179 (1%)
Query: 1165 FYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFK 1224
F SS+ + ++ G P+ C C K F+ +L H + + + ++C C K+F+ K
Sbjct: 4 FGSSSSVAQAALEP-GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 1225 TSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYL 1284
RH + H Y C C K+ S L+ H H + + C CGK F Q +L
Sbjct: 63 KDLTRHQRTHTGEKPYK-CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 1285 EEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
H+R HTG KPY C C K F+++ L+ H++ H K + C CG F + H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 715 GERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFKQ 774
GE+PYAC CG +F +L H R H GE+PY C ECG+SF+ + + H + H G K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK- 76
Query: 775 TIECEYCHNTFTFETGLMGVVTRDEWEILLRDKVRICPKCNKEFYSDRTMRRHLKQVHIE 834
+C C +F+ L R +K CP+C K F +R H ++ H
Sbjct: 77 PYKCPECGKSFSQRANL-----RAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 835 IKTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISA 894
K + C EC K F+ + L H H G + +C CG + + + L H
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQR-THTG------EKPYKCPECGKSFSRRDALNVHQRT 183
Query: 895 HLGIK 899
H G K
Sbjct: 184 HTGKK 188
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 81/199 (40%), Gaps = 32/199 (16%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRMIKE 242
+K + C C K++ L +H HTGEK + C C + F L RH H
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH------ 72
Query: 243 TSEEFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCG 302
T E+ YK CP C K++ +R H R H+ +P+ C CG
Sbjct: 73 -----------TGEKPYK--------CPECGKSFSQRANLRAHQR-THTGEKPYACPECG 112
Query: 303 KYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSI 362
K F HL H+ R H G K K C CG F ++ H +HTG K + C
Sbjct: 113 KSFSQLAHLRAHQ-RTHTGEKPYK-----CPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 363 CQSTYTTARGLKRHNKNHL 381
C +++ L H + H
Sbjct: 167 CGKSFSRRDALNVHQRTHT 185
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 88/253 (34%), Gaps = 86/253 (33%)
Query: 469 GERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERGD 528
GE+P+ C CG ++ +LA H R HTGE+PY C CG SF+ + H + HT
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG--- 74
Query: 529 VRHIECQHSLKIIEYKIYQWISIENWFKIKRENVPSTKDQSHKKRDQKIECNICGALFAT 588
++ +C CG F+
Sbjct: 75 ---------------------------------------------EKPYKCPECGKSFSQ 89
Query: 589 KYTLQDHMNTHTGNKYKCDVCDNGYSSXXXXXXXXXXXXQENGELPPSKIQKCPICHKIF 648
+ L+ H THTG K CP C K F
Sbjct: 90 RANLRAHQRTHTGE----------------------------------KPYACPECGKSF 115
Query: 649 IRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGERKYCCHICGKKM--RG 704
+ LR H G K + C CG + +L H HTGE+ Y C CGK R
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175
Query: 705 KLKEHMLTHTGER 717
L H THTG++
Sbjct: 176 ALNVHQRTHTGKK 188
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 87/223 (39%), Gaps = 65/223 (29%)
Query: 875 CHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAKHNKVYNKAQYQD 934
C CG + + L +H H G KPY C C + + KK L RH+ H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----------- 72
Query: 935 YQIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSV 989
K KCP+C K FS +R H R K + C CG ++ +
Sbjct: 73 --------------TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 990 KHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI 1049
HL+ H+ H +GE P +KCP C K F+
Sbjct: 119 AHLRAHQRTH---TGEKP----YKCPECGKSFSR-------------------------- 145
Query: 1050 KGNLQQHMETHSGEKKICCHICGKKL--RGRLNEHMLTHTGER 1090
+ NL H TH+GEK C CGK R LN H THTG++
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 35/215 (16%)
Query: 112 TSEEWRQLVIKNARK---CPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKR 168
+S Q ++ K CP CG + + H R H + C CGK F+ K
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKD 64
Query: 169 VKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAM 228
+ +H++ H G +K ++C C K++ R L H HTGEK + C C + F A
Sbjct: 65 LTRHQRT-HTG---EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 229 LKRHLVKHSRMIKETSEEFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIRE 288
L+ H H T E+ YK CP C K++ + H R
Sbjct: 121 LRAHQRTH-----------------TGEKPYK--------CPECGKSFSREDNLHTHQR- 154
Query: 289 VHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVK 323
H+ +P++C CGK F S+R + +R H G K
Sbjct: 155 THTGEKPYKCPECGKSF-SRRDALNVHQRTHTGKK 188
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 95/228 (41%), Gaps = 45/228 (19%)
Query: 192 SKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRMIKETSEEFVETG 251
S + +++ LE GEK + C C + F HL +H R
Sbjct: 6 SSSSVAQAALEP------GEKPYACPECGKSF----SRSDHLAEHQR------------- 42
Query: 252 SITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHL 311
+ T E+ YK CP C K++ K + H R H+ +P++C CGK F SQR
Sbjct: 43 THTGEKPYK--------CPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSF-SQRAN 92
Query: 312 VQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTAR 371
++ +R H G K + C CG F H+ H +HTG K + C C +++
Sbjct: 93 LRAHQRTHTGEKP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 372 GLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRDWVHGDK 419
L H + H ++ YKC +C K F + + H+ G K
Sbjct: 148 NLHTHQRTHT-------GEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDT 1708
+P+ CP C K F +L H++ H + ++C CGKSF+ L RH + ++
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHT-GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 1709 KFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVF 1768
K C C + F + + H+R H + ++C C + +Q +L H+ H +
Sbjct: 79 K--CPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 1769 CKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHL 1818
C C F ++ L H +P+ CP C K F + L H++ H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 31/196 (15%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVED 76
C C +S L +H +HTG KPY C C S+ K L RH + H + E
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-------TGEK 76
Query: 77 MYQCDICSKMFIEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPICGDRYKS 136
Y+C C K F + + H+ R + CP CG +
Sbjct: 77 PYKCPECGKSFSQRANLRAHQ-------------------RTHTGEKPYACPECGKSFSQ 117
Query: 137 GTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYL 196
+R H R H + C CGK F+ + H++ H G +K ++C C K++
Sbjct: 118 LAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQR-THTG---EKPYKCPECGKSFS 172
Query: 197 SRVGLEDHINNHTGEK 212
R L H HTG+K
Sbjct: 173 RRDALNVHQRTHTGKK 188
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 1675 PMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHE 1734
P + + C CGKSF+ ++HL H + ++ K C C + F K+ +H+R H
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK--CPECGKSFSDKKDLTRHQR-THT 73
Query: 1735 TQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQP 1794
+ + C C + +Q+ L H+ H + C C F L H +P
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 1795 HTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSH 1842
+ CP C K F + L H++ H +K +C CGKSF+R L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHT-GEKPYKCPECGKSFSRRDALNVH 180
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 1739 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCP 1798
++C C + ++ +L +H+ H + C C F K +L H +P+ CP
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 1799 VCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKREQRKKHER 1858
C K F + L AH++ H +K C CGKSF++ HL++H +
Sbjct: 82 ECGKSFSQRANLRAHQRTHT-GEKPYACPECGKSFSQLAHLRAH---------------Q 125
Query: 1859 KDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHN 1914
+ H + + C C + +++ L H+ H + C C F ++ L+VH
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 76/221 (34%), Gaps = 50/221 (22%)
Query: 1260 MLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLH 1319
+ + + C CGK F + +L EH+R HTG KPY C C K F+ K L H++ H
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 1320 LNIKDFICDLCGAKFYEFNTYVTHVHETHAILPRVIVTKFKVEDFQFFVCESMQSAKSTC 1379
K + C CG F + H P C
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA------------------------C 108
Query: 1380 VLCKKVFSTRENCTNHIMECHSYDVFEWKDKGVIKEHINPLFLKKFAFALNCPVCKLYFD 1439
C K FS + H + H K CP C F
Sbjct: 109 PECGKSFSQLAHLRAHQ-----------------RTHTGEKPYK-------CPECGKSFS 144
Query: 1440 RESDFHSHMQSYHNSHSY-CMKCN-MYIFNSRLQLHKRKHT 1478
RE + H+H +++ Y C +C + L +H+R HT
Sbjct: 145 REDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 1595 FSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCP 1654
++C C + +R +L +H+ H E C +C F K +L H +P+ CP
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 1655 VCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRL 1714
C K F + NL H++ H + + C CGKSF+ HL+ H + ++ K C
Sbjct: 82 ECGKSFSQRANLRAHQRTHT-GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK--CPE 138
Query: 1715 CSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHI 1762
C + F ++ H+R H + + C C + +++ L H+ H
Sbjct: 139 CGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 38/200 (19%)
Query: 806 DKVRICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIR 865
+K CP+C K F + H ++ H K + C EC K F+ ++ L RH H G
Sbjct: 19 EKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTG-- 74
Query: 866 NTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAKHNK 925
+ +C CG + + + LR H H G KPY C C + + L+ H+ H
Sbjct: 75 ----EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-- 128
Query: 926 VYNKAQYQDYQIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLR-----KKFKCD 980
K KCP+C K FS + H R K +KC
Sbjct: 129 -----------------------TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 981 VCGNGYTSVKHLKRHKIKHM 1000
CG ++ L H+ H
Sbjct: 166 ECGKSFSRRDALNVHQRTHT 185
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Query: 1558 RNVTSDTKFPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTSTRKYYLVKHKSRH 1617
R T + + C C + F KK +H+R H + C C + +++ L H+ H
Sbjct: 42 RTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Query: 1618 IKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
E C +C F L H +P+ CP C K F + NL TH++ H
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT-GE 159
Query: 1678 RNHQCDTCGKSFTGNNHLKRH 1698
+ ++C CGKSF+ + L H
Sbjct: 160 KPYKCPECGKSFSRRDALNVH 180
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Query: 1566 FPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTSTRKYYLVKHKSRHIKEYTVFC 1625
+ C C + F +H+R H + C C + + K L +H+ H E C
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 1626 KKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTC 1685
+C F + L H +P+ CP C K F +L H++ H + ++C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT-GEKPYKCPEC 139
Query: 1686 GKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHER 1730
GKSF+ ++L H + + + C C + F ++ H+R
Sbjct: 140 GKSFSREDNL--HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 1491 YSCDCCEMSWSNPKDFGQHLNL------VKCSYCANAAFCSSKALTRHLVEEHSDKLCGX 1544
Y+C C S+S +H KC C + F K LTRH
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS-FSDKKDLTRHQ----------- 69
Query: 1545 XXXXXXXXXXXXTRNVTSDTKFPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTS 1604
R T + + C C + F + + H+R H ++C C +
Sbjct: 70 -------------RTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSF 115
Query: 1605 TRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKF 1664
++ +L H+ H E C +C F ++ L+ H +P+ CP C K F +
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175
Query: 1665 NLTTHKKLHL 1674
L H++ H
Sbjct: 176 ALNVHQRTHT 185
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 1819 PIDKNCQCDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQ 1878
P +K C CGKSF+R+ HL H ++ H + + C C + +
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEH---------------QRTHTGEKPYKCPECGKSFSD 61
Query: 1879 KYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCP 1926
K L +H+ H + C C F + L H +P+ CP
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 66/214 (30%), Gaps = 58/214 (27%)
Query: 1431 CPVCKLYFDRESDFHSHMQSYHNSHSY-CMKCNMYIFNSR-LQLHKRKHTREEEQWTKVN 1488
CP C F R H +++ Y C +C + + L H+R HT E+
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK------- 76
Query: 1489 IEYSCDCCEMSWSNPKDFGQHLNLVKCSYCANAAFCSSKALTRHLVEEHSDKLCGXXXXX 1548
Y C C K F Q NL
Sbjct: 77 -PYKCPECG------KSFSQRANL------------------------------------ 93
Query: 1549 XXXXXXXXTRNVTSDTKFPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTSTRKY 1608
R T + + C C + F + H+R H + C C + +R+
Sbjct: 94 -----RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSRED 147
Query: 1609 YLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHN 1642
L H+ H E C +C F ++ LNVH
Sbjct: 148 NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
Length = 87
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1063 EKKICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPF 1120
EK C CGK L +H THTGE+PY C CG SF S L+ H R H GE+P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1121 TCSECGQSFAARSAFSLHLKKH 1142
C ECG+SF+ S H + H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 690 ERKYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPY 747
E+ Y C CGK L++H THTGE+PY C CG +F L H R H GE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 748 MCSECGQSFAARSAFSLHLKKHAGFK 773
C ECG+SF+ S H + H K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACD 1300
Y C C K+ S L+ H H + + C CGK F Q L++H+R HTG KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 1301 LCSKQFTQKSTLNIHRKLHLNIK 1323
C K F++ L+ H++ H N K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFI 1326
+ + C CGK F Q L++H+R HTG KPY C C K F+Q S L H++ H K +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 1327 CDLCGAKF 1334
C CG F
Sbjct: 63 CPECGKSF 70
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPY 501
E+P C CGK L+ H THTGE+P+ C CG ++ L H R HTGE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 502 VCNYCGHSFAARPAFNLHLKRH 523
C CG SF+ + H + H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGSHIL 1148
E+PY C CG SF S L+ H R H GE+P+ C ECG+SF+ S H + H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1149 RRHIGYTVFCKECNIGFYSSTHLHSH 1174
+ C EC F S HL H
Sbjct: 62 K--------CPECGKSFSRSDHLSRH 79
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 418 DKCYLCKICGARVK--SNLKAHMRIHTGERPVCCHICGKKLR--GKLKDHMLTHTGERPF 473
+K Y C CG SNL+ H R HTGE+P C CGK L+ H THTGE+P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 474 GCEVCGSTYKYKYYLAVHMRKHTGER 499
C CG ++ +L+ H R H ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1038 KCHICKVCGAKIK--GNLQQHMETHSGEKKICCHICGKKLR--GRLNEHMLTHTGERPYA 1093
K + C CG NLQ+H TH+GEK C CGK L +H THTGE+PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 1094 CEFCGSSFKDKSYLRIHIRKHNGER 1118
C CG SF +L H R H ++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGERPV 447
++ YKC +C K F + S + +H+ G+K Y C CG S+L+ H R HTGE+P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 448 CCHICGKKLRGKLKDHMLTH 467
C CGK DH+ H
Sbjct: 62 KCPECGKSF--SRSDHLSRH 79
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERGDV 529
E+P+ C CG ++ L H R HTGE+PY C CG SF+ H + HT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 530 RHIECQHSL 538
+ EC S
Sbjct: 62 KCPECGKSF 70
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHT 353
+P++C CGK F +L +H+R H G K ++C CG F + + H +HT
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEKP-----YKCPECGKSFSQSSDLQKHQRTHT 56
Query: 354 GIKNHVCSICQSTYTTARGLKRHNKNH 380
G K + C C +++ + L RH + H
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGI 1176
E+P+ C ECG+SF+ S H + H G + C EC F S+ L H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK--------CPECGKSFSQSSDLQKHQR 53
Query: 1177 KVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAK 1209
G P+ C C K F+ +L+ H + + K
Sbjct: 54 THTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 1012 HKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHMETHSGEKKICCH 1069
+KCP C K F+++ L+KH G K + C CG +LQ+H TH+GEK C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 1070 ICGKKL--RGRLNEHMLTHTGER 1090
CGK L+ H TH ++
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 263 LQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGV 322
+++ CP C K++ + ++ H R H+ +P++C CGK F SQ +Q +R H G
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSF-SQSSDLQKHQRTHTGE 58
Query: 323 KKIKHSNFECFHCGAKFISRTHIADHMTSHTGIK 356
K ++C CG F H++ H +H K
Sbjct: 59 KP-----YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 973 LRKKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLD 1032
+ K +KC CG ++ +L++H+ H +GE P +KCP C K F+++ L+KH
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTH---TGEKP----YKCPECGKSFSQSSDLQKHQR 53
Query: 1033 WVHGNKCHICKVCGAKI--KGNLQQHMETHSGEK 1064
G K + C CG +L +H TH +K
Sbjct: 54 THTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1625 CKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDT 1684
C +C F + L H +P+ CP C K F +L H++ H + ++C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT-GEKPYKCPE 65
Query: 1685 CGKSFTGNNHLKRH 1698
CGKSF+ ++HL RH
Sbjct: 66 CGKSFSRSDHLSRH 79
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 637 KIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYC 694
K KCP C K F ++ L+KH G K + C CG S L++H HTGE+ Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 695 CHICGKKMRGK--LKEHMLTHTGER 717
C CGK L H TH ++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVED 76
C C +S S L H +HTG KPY C C S+ + L++H + H TG E
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH---TG----EK 59
Query: 77 MYQCDICSKMFIEHHAMVKHR 97
Y+C C K F + +H+
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQ 80
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1769 CKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDV 1828
C C F + L H +P+ CP C K F L H++ H +K +C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT-GEKPYKCPE 65
Query: 1829 CGKSFARTFHLKSH 1842
CGKSF+R+ HL H
Sbjct: 66 CGKSFSRSDHLSRH 79
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRA 389
++C CG F +++ H +HTG K + C C +++ + L++H + H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT-------G 57
Query: 390 DEMYKCDKCDKLFIEQSEMVQHR 412
++ YKC +C K F + +H+
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQ 80
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 1183 PFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVTYYP 1242
P+ C C K F+ NL H + + + ++C C K+F+ + ++H + H Y
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK- 62
Query: 1243 CTVCSKNLSSPYRLKTHMLIHANNR 1267
C C K+ S L H H N +
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 1158 CKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNIC 1217
C EC F S++L H G P+ C C K F+ +L H + + + ++C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 1218 LKTFNFKTSYKRHLKQHDD 1236
K+F+ RH + H +
Sbjct: 67 GKSFSRSDHLSRHQRTHQN 85
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAH 895
K + C EC K F+ LQ+H H G + +C CG + + + L+ H H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEK------PYKCPECGKSFSQSSDLQKHQRTH 55
Query: 896 LGIKPYCCIFCEEKYFSKKSLKRHEAKHN 924
G KPY C C + + L RH+ H
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 356 KNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRDWV 415
K + C C +++ + L++H + H ++ YKC +C K F + S++ +H+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHT-------GEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 416 HGDKCYLCKICGARVKSN--LKAHMRIHTGER 445
G+K Y C CG + L H R H ++
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 574 DQKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYSSXXXXXXXXXXXXQENGE 632
++ +C CG F+ LQ H THTG K YKC C +S GE
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH---TGE 58
Query: 633 LPPSKIQKCPICHKIFIRNYMLRKHLDFVHGNK 665
P KCP C K F R+ L +H H NK
Sbjct: 59 KP----YKCPECGKSFSRSDHLSRH-QRTHQNK 86
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
KPY C C K F+Q S L H++ H K + C CG F + + H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH 51
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDT 1708
+P+ CP C K F NL H++ H + ++C CGKSF+ ++ L++H + ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1709 KFPCRLCSQEFDTKEQRKKHER 1730
K C C + F + +H+R
Sbjct: 62 K--CPECGKSFSRSDHLSRHQR 81
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 211 EKGHICEICNRDFYSDAMLKRHLVKHSRMIKETSEEFVETGSITREEWYKMVLQRVKTCP 270
EK + C C + F + L++H H T E+ YK CP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH-----------------TGEKPYK--------CP 36
Query: 271 LCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHER 316
C K++ + ++ H R H+ +P++C CGK F HL +H+R
Sbjct: 37 ECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 25/105 (23%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRMIKE 242
+K ++C C K++ L+ H HTGEK + C C + F + L++H H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH------ 55
Query: 243 TSEEFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIR 287
T E+ YK CP C K++ + + H R
Sbjct: 56 -----------TGEKPYK--------CPECGKSFSRSDHLSRHQR 81
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 1594 VFSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTC 1653
+ C C + ++ L KH+ H E C +C F ++L H +P+ C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 1654 PVCKKIFVNKFNLTTHKKLH 1673
P C K F +L+ H++ H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 121 IKNARKCPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGI 180
++ KCP CG + +++++H R H + C CGK F+ +++H++ H G
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRT-HTG- 57
Query: 181 KQKKKFECAHCSKTYLSRVGLEDHINNHTGEK 212
+K ++C C K++ L H H +K
Sbjct: 58 --EKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 1739 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCP 1798
+ C C + +Q L KH+ H + C C F ++L H +P+ CP
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 1799 VCKKIFVNKVTLAAHKKIH 1817
C K F L+ H++ H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHM 66
C C +S S L H +HTG KPY C C S+ + L RH + H
Sbjct: 35 CPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 30/107 (28%)
Query: 899 KPYCCIFCEEKYFSKKSLKRHEAKHNKVYNKAQYQDYQIQDLSMDQYRELVQSKERKCPK 958
KPY C C + + +L++H+ H K KCP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH-------------------------TGEKPYKCPE 37
Query: 959 CEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHM 1000
C K FS ++KH R K +KC CG ++ HL RH+ H
Sbjct: 38 CGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKREQ 1852
+P+ CP C K F L H++ H +K +C CGKSF+++ L+ H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKH---------- 51
Query: 1853 RKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRH 1889
++ H + + C C + ++ +L +H+ H
Sbjct: 52 -----QRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 806 DKVRICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIR 865
+K CP+C K F +++H ++ H K + C EC K F+ LQ+H H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTG-- 57
Query: 866 NTGPNQLLECHYCGITKNNKTLLR-DHISAH 895
+ +C CG K+ R DH+S H
Sbjct: 58 ----EKPYKCPECG-----KSFSRSDHLSRH 79
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 74 VEDMYQCDICSKMFIEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPICGDR 133
+E Y+C C K F + + KH+ R + KCP CG
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQ-------------------RTHTGEKPYKCPECGKS 41
Query: 134 YKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKV 175
+ +D+++H R H + C CGK F+ + +H++
Sbjct: 42 FSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 26/105 (24%)
Query: 41 KPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQCDICSKMFIEHHAMVKHRDWL 100
KPY C C S+ + L++H + H TG E Y+C C K F + + KH+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH---TG----EKPYKCPECGKSFSQSSDLQKHQ--- 52
Query: 101 HAIHFRSEKNLTSEEWRQLVIKNARKCPICGDRYKSGTDMRRHYR 145
R + KCP CG + + RH R
Sbjct: 53 ----------------RTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 875 CHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAKHNKVYNKAQYQD 934
C CG + + + L+ H H G KPY C C + + L++H+ H
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH----------- 55
Query: 935 YQIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLR 974
K KCP+C K FS ++ +H R
Sbjct: 56 --------------TGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 1676 MNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHET 1735
M + ++C CGKSF+ +++L++H + ++ K C C + F +KH+R H
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK--CPECGKSFSQSSDLQKHQR-THTG 57
Query: 1736 QGLFSCDLCSYTSTQKYYLVKHKSRH 1761
+ + C C + ++ +L +H+ H
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 1820 IDKNCQCDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQK 1879
++K +C CGKSF+++ +L+ H ++ H + + C C + +Q
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKH---------------QRTHTGEKPYKCPECGKSFSQS 45
Query: 1880 YYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHN 1914
L KH+ H + C C F + L H
Sbjct: 46 SDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACD 1300
+ C +C K+ L TH+LIH++ R + C+ CGK F QK +++H +HTG KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1301 LCSKQFTQKSTLNIHRKLHLN 1321
+C K F+Q S L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 421 YLCKICGARVK--SNLKAHMRIHTGERPVCCHICGKKL--RGKLKDHMLTHTGERPFGCE 476
+ CKICG K S L H+ IH+ RP C CGK+ + +K H HTGE+P C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 477 VCGSTYKYKYYLAVHMRKHTG 497
VCG + L H RKHTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1068 CHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSEC 1125
C ICGK + L+ H+L H+ RPY C++CG F KS ++ H H GE+P C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 1126 GQSFAARSAFSLHLKKHAG 1144
G++F+ S H +KH G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 695 CHICGK--KMRGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSEC 752
C ICGK K L H+L H+ RPY C+ CG F K + H H GE+P+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 753 GQSFAARSAFSLHLKKHAG 771
G++F+ S H +KH G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 1212 FECNICLKTFNFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTC 1271
F+C IC K+F ++ HL H D+ Y PC C K +K H IH + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPY-PCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 1272 EVCGKGFIQKRYLEEHKRVHTG 1293
+VCGK F Q L H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICD 1328
F C++CGK F + L H +H+ +PY C C K+F QKS + H +H K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1329 LCGAKFYEFNTYVTH 1343
+CG F + + +TH
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 449 CHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYC 506
C ICGK + L H+L H+ RP+ C+ CG + K + H HTGE+P+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 507 GHSFAARPAFNLHLKRHT 524
G +F+ H ++HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 127 CPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKF 186
C ICG +K + + H +H TR PC+ CGKRF+ +K+H +H G K K
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK-- 59
Query: 187 ECAHCSKTYLSRVGLEDHINNHTG 210
C C K + L H HTG
Sbjct: 60 -CQVCGKAFSQSSNLITHSRKHTG 82
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 641 CPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGERKYCCHIC 698
C IC K F R+ L HL + + C+ CG K +K+H +HTGE+ + C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 699 GKKM--RGKLKEHMLTHTG 715
GK L H HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 719 YACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFKQTIEC 778
+ C+ICG +FK L H+ H+ RPY C CG+ F +S H H G K +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH-KC 60
Query: 779 EYCHNTFTFETGLM 792
+ C F+ + L+
Sbjct: 61 QVCGKAFSQSSNLI 74
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1769 CKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDV 1828
CKIC F + L H + D +P+ C C K F K + H IH +K +C V
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG-EKPHKCQV 62
Query: 1829 CGKSFARTFHLKSH 1842
CGK+F+++ +L +H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 156 CEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHI 215
C++CGK F + H ++H + + C +C K + + ++ H HTGEK H
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIH---SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 216 CEICNRDFYSDAMLKRHLVKHS 237
C++C + F + L H KH+
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHT 81
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 1092 YACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRH 1151
+ C+ CG SFK S L H+ H+ RP+ C CG+ F +S H H G +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK-- 59
Query: 1152 IGYTVFCKECNIGFYSSTHLHSHGIKVHG 1180
C+ C F S++L +H K G
Sbjct: 60 ------CQVCGKAFSQSSNLITHSRKHTG 82
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 473 FGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
F C++CG ++K L+ H+ H+ RPY C YCG F + H HT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1625 CKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDT 1684
CK C F + L+ H + D +P+ C C K F K ++ H +H + H+C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-GEKPHKCQV 62
Query: 1685 CGKSFTGNNHLKRH 1698
CGK+F+ +++L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 269 CPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHS 328
C +C K+++ + + H+ +HS RP+ C+ CGK F + + +H +H G K K
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK-- 59
Query: 329 NFECFHCGAKFISRTHIADHMTSHTG 354
C CG F +++ H HTG
Sbjct: 60 ---CQVCGKAFSQSSNLITHSRKHTG 82
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%)
Query: 1595 FSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCP 1654
F C +C + R L H H C+ C F K+++ H +PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1655 VCKKIFVNKFNLTTHKKLH 1673
VC K F NL TH + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 298 CKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKN 357
CK CGK FK L H +H + + C +CG +F ++ + H HTG K
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRP-----YPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 358 HVCSICQSTYTTARGLKRHNKNH 380
H C +C ++ + L H++ H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 216 CEICNRDFYSDAMLKRHLVKHSRMIKETSEEFVETGSITREEWYKMVLQRVKTCPLCKKT 275
C+IC + F + L HL+ HS R C C K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDT-------------------------RPYPCQYCGKR 38
Query: 276 YQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERR 317
+ M+ H +H+ +PH+C+ CGK F +L+ H R+
Sbjct: 39 FHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 837 TFSCEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHL 896
+F C+ C K F L H IH R C YCG + K+ ++ H H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRP------YPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 897 GIKPYCCIFCEEKYFSKKSLKRHEAKHN 924
G KP+ C C + + +L H KH
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1014 CPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHMETHSGEKKICCHIC 1071
C C K F + L HL + + C+ CG + K ++++H H+GEK C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 1072 GKKLRGRLN--EHMLTHTG 1088
GK N H HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 360 CSICQSTYTTARGLKRHNKNHLREAGVLRAD-EMYKCDKCDKLFIEQSEMVQHRDWVHGD 418
C IC ++ + L H ++ +D Y C C K F ++S+M +H G+
Sbjct: 4 CKICGKSFKRSSTLSTHL--------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 419 KCYLCKICGARV--KSNLKAHMRIHTG 443
K + C++CG SNL H R HTG
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRH 65
C +C R+ KS + H HTG KP+ C +C ++ + L H ++H
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 14 NVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLS 73
+ +C C + S L HL H+ +PY C C + +K+H H TG
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---TG--- 54
Query: 74 VEDMYQCDICSKMFIEHHAMVKH 96
E ++C +C K F + ++ H
Sbjct: 55 -EKPHKCQVCGKAFSQSSNLITH 76
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 329 NFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLR 388
+F+C CG F + ++ H+ H+ + + C C + +K+H H E
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE----- 55
Query: 389 ADEMYKCDKCDKLFIEQSEMVQH 411
+ +KC C K F + S ++ H
Sbjct: 56 --KPHKCQVCGKAFSQSSNLITH 76
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 977 FKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHG 1036
F C +CG + L H + H S P + C C K F + +KKH G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH---SDTRP----YPCQYCGKRFHQKSDMKKHTFIHTG 54
Query: 1037 NKCHICKVCGAKI--KGNLQQHMETHSG 1062
K H C+VCG NL H H+G
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 1158 CKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNIC 1217
CK C F S+ L +H + P+ C++C K F K ++ H + + +C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 1218 LKTFNFKTSYKRHLKQH 1234
K F+ ++ H ++H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 30/79 (37%)
Query: 1739 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCP 1798
F C +C + + L H H C+ C F K+++ H +PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1799 VCKKIFVNKVTLAAHKKIH 1817
VC K F L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 811 CPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
C C K F T+ HL +H + + + C+ C K F + +++H +IH G + P+
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEK---PH 58
Query: 871 QLLECHYCGITKNNKTLLRDHISAHLG 897
+C CG + + L H H G
Sbjct: 59 ---KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 1653 CPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPC 1712
C +C K F L+TH +H R + C CGK F + +K+H + +H + C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSD-TRPYPCQYCGKRFHQKSDMKKHTF-IHTG-EKPHKC 60
Query: 1713 RLCSQEFDTKEQRKKHERK 1731
++C + F H RK
Sbjct: 61 QVCGKAFSQSSNLITHSRK 79
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1267 RVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
R + C V C + F QK L+ H R+HTG KP+ C +C + F+Q+++LN H + H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 1325 FICDLCGAKFYEFNTYVTHV 1344
F CD+CG KF +T H
Sbjct: 63 FACDICGRKFATLHTRTRHT 82
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L TH+ IH + F C +C + F Q+ L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F T H K+HL KD
Sbjct: 68 CGRKFATLHTRTRHTKIHLRQKD 90
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLRGK--LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ K L H+ HTG++PF C +C + + L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMRGK--LKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ K L H+ HTG++P+ C IC F + L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA + H K H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L+ H+ HTG++P+ C C +F ++ L HIR H GE+PF C CG+ FA + H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F K+ L HIR H G++PF C C ++F+ +++ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 716 ERPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC + C F K L H+R H G++P+ C C ++F+ +++ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + H ++ H G +K F+C C + + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRI-HTG---QKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F + RH H R
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLR 87
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S K+ L H+ HTG KP+ C IC ++ L H++ H TG E +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F H +H
Sbjct: 65 CDICGRKFATLHTRTRH 81
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 390 DEMYKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGER 445
+ Y C + CD+ F +++ + H G K + C+IC +++L AH+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 446 PVCCHICGKKL 456
P C ICG+K
Sbjct: 62 PFACDICGRKF 72
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1183 PFIC--EHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVTY 1240
P+ C E C + F+ K NL H++ + + F+C IC++ F+ + S H++ H +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIH 1263
C +C + ++ + H IH
Sbjct: 64 A-CDICGRKFATLHTRTRHTKIH 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F K LD H I+ H Q P C +C + F + +L AH + H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLKRE 1851
K CD+CG+ FA T H ++ + +HL+++
Sbjct: 61 KPFACDICGRKFA-TLHTRTRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F T+L +H I++H G PF C C + F+ + +L H++ + + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F + RH K H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F + +L H R +H G K F+C C F + + H+ +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKP-----FQCRICMRNFSQQASLNAHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + T RH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGERKYCCH 696
CP+ C + F + L H+ G K C++C + SL H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1012 HKCP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHMETHSGEKKIC 1067
+ CP +C + F++ L H+ G K C++C + +L H+ TH+GEK
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 1068 CHICGKKL 1075
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKR 1850
+P+ CPV C + F K L H +IH K QC +C ++F++ L +HI
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTG-QKPFQCRICMRNFSQQASLNAHI------- 54
Query: 1851 EQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
+ H + F+CD+C +K+ + ++RH K
Sbjct: 55 --------RTHTGEKPFACDICG----RKFATLHTRTRHTK 83
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S ++ L H+ +HTG KP+ C IC + RH K H++
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLR 87
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ + L H IH G + +C C + + L HI H G KP
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTG------QKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ + + RH H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKK 1802
C +QK L H H C+IC F + L+ H I+ H + P C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPFACDICGR 70
Query: 1803 IFVNKVTLAAHKKIHL 1818
F T H KIHL
Sbjct: 71 KFATLHTRTRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F K L+ H I+ H Q P C +C + F + +L H + H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLKR 1706
+ CD CG+ F + RH +HL++
Sbjct: 61 KPFACDICGRKFATLHTRTRHT-KIHLRQ 88
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 577 IECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYSS 615
+C IC F+ + +L H+ THTG K + CD+C +++
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKK 1658
C ++K L H H + C+ C F + LN H I+ H + P C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPFACDICGR 70
Query: 1659 IFVNKFNLTTHKKLHL 1674
F T H K+HL
Sbjct: 71 KFATLHTRTRHTKIHL 86
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 952 KERKCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
K +C C + FS + H+R K F CD+CG + ++ RH H+++
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQ 88
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L TH+ IH + F C +C + F Q L +H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F T + H K+HL KD
Sbjct: 68 CGRKFATLHTRDRHTKIHLRQKD 90
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 1267 RVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
R + C V C + F QK L+ H R+HTG KP+ C +C + F+Q + LN H + H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 1325 FICDLCGAKFYEFNTYVTHV 1344
F CD+CG KF +T H
Sbjct: 63 FACDICGRKFATLHTRDRHT 82
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLRGK--LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ K L H+ HTG++PF C +C + L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA + H K H + D
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMRGK--LKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ K L H+ HTG++P+ C IC F L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L+ H+ HTG++P+ C C +F + L HIR H GE+PF C CG+ FA H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + H ++ H G +K F+C C + + GL HI HTGEK
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRI-HTG---QKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F + RH H R
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLR 87
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F K+ L HIR H G++PF C C ++F+ + + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S K+ L H+ HTG KP+ C IC ++ GL +H++ H TG E +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKHRDWLHAIHFRSE 108
CDIC + F A + RD IH R +
Sbjct: 65 CDICGRKF----ATLHTRDRHTKIHLRQK 89
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 716 ERPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC + C F K L H+R H G++P+ C C ++F+ + + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1183 PFIC--EHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVTY 1240
P+ C E C + F+ K NL H++ + + F+C IC++ F+ T +H++ H
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP- 62
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIH 1263
+ C +C + ++ + H IH
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVK--SNLKAHMRIHTGERPVC 448
Y C + CD+ F +++ + H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F + +L H R +H G K F+C C F T + H+ +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKP-----FQCRICMRNFSQHTGLNQHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + T RH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F++ L H+ G K C++C L QH+ TH+GEK C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F K LD H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLKRE 1851
K CD+CG+ FA T H + + +HL+++
Sbjct: 61 KPFACDICGRKFA-TLHTRDRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F T+L +H I++H G PF C C + F+ L H++ + + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F + RH K H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1649 QPHTCPV--CKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKR 1706
+P+ CPV C + F K NL TH ++H + QC C ++F+ + L +HI +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQHTGLNQHIRT--HTG 59
Query: 1707 DTKFPCRLCSQEFDTKEQRKKHER 1730
+ F C +C ++F T R +H +
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTK 83
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIK--GSLKEHMIVHTGERKYCCH 696
CP+ C + F + L H+ G K C++C L +H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S + L H+ +HTG KP+ C IC + RH K H++
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ + L H IH G + +C C + T L HI H G KP
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTG------QKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ + + RH H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 1117 ERPFTCS--ECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
ERP+ C C + F+ ++ H++ H G + C+ C F T L+ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ--------CRICMRNFSQHTGLNQH 53
Query: 1175 GIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAK 1209
I+ H G PF C+ C + F T+H + H K
Sbjct: 54 -IRTHTGEKPFACDICGRKFA-----TLHTRDRHTK 83
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 28/75 (37%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C +QK L H H C+IC F L+ H +P C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F T H KIHL
Sbjct: 72 FATLHTRDRHTKIHL 86
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYSS 615
+ +C IC F+ L H+ THTG K + CD+C +++
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 1061 SGEKKICCHICGKKLRG--RLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGE- 1117
SG + C ICGK R LN H L+H+GE+PY+C CG FK K + H+R H+G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1118 -RPFTCSECGQSFAARSAFSLHLKK-HAG 1144
+P+ C CG+ F+ + H+K+ H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 688 TGERKYCCHICGKKMRG--KLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGE- 744
+G C ICGK R L H L+H+GE+PY+C +CG FK K + H+R H+G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 745 -RPYMCSECGQSFAARSAFSLHLKK-HAG 771
+PY+C CG+ F+ + H+K+ H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 442 TGERPVCCHICGKKLRG--KLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGE- 498
+G V C ICGK R L H L+H+GE+P+ C VCG +K K ++ H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 499 -RPYVCNYCGHSFAARPAFNLHLKR 522
+PY+C CG F+ N H+K+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGSH 1146
+G ACE CG F+D +L H H+GE+P++C CG F + S H++ H GS
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS- 61
Query: 1147 ILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLP 1182
+G C+ C GF HL+ H +VH P
Sbjct: 62 -----VGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNI- 1322
+ + CE+CGK F +L HK H+G KPY+C +C +F +K ++ H + H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1323 -KDFICDLCGAKFYEFNTYVTHVHETHA 1349
K +IC CG F + H+ + H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1243 CTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGY--KPYACD 1300
C +C K Y L H L H+ + ++C VCG F +K + H R H G KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 1301 LCSKQFTQKSTLNIHRK 1317
C K F++ LN H K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAG-F 772
+G ACEICG F+ ++L H H+GE+PY C CG F + S H++ H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 773 KQTIECEYCHNTFTFETGLMG 793
+ C+ C F+ L G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNG 83
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1766 NVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIH-LPIDKNC 1824
V C+IC F L+ H + +P++CPVC F K ++ H + H + K
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 1825 QCDVCGKSFARTFHLKSHISSVH 1847
C CGK F+R HL HI VH
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1623 VFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLH-LPMNRNHQ 1681
V C+ C F LN H + +P++CPVC F K ++ H + H + + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 1682 CDTCGKSFTGNNHLKRHIYSVH 1703
C +CGK F+ +HL HI VH
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 1036 GNKCHICKVCGAKIKG--NLQQHMETHSGEKKICCHICGKKL--RGRLNEHMLTHTGE-- 1089
G+ C++CG + +L +H +HSGEK C +CG + + R++ H+ +H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRK-HNGE 1117
+PY C+ CG F +L HI++ H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRH 523
+G CE+CG ++ Y+L H H+GE+PY C CG F + + H++ H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 663 GNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCHICGK--KMRGKLKEHMLTHTGE-- 716
G+ +C++CG + L H + H+GE+ Y C +CG K + ++ H+ +H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 717 RPYACEICGGTFKTKWYLGVHMRK-HNGE 744
+PY C+ CG F +L H+++ H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 26/114 (22%)
Query: 209 TGEKGHICEICNRDFYSDAMLKRHLVKHSRMIKETSEEFVETGSITREEWYKMVLQRVKT 268
+G G CEIC + F L RH + HS E+ Y +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG-----------------EKPY--------S 37
Query: 269 CPLCKKTYQSAKGMRLHIREVHSKV-RPHQCKGCGKYFKSQRHLVQHERRVHLG 321
CP+C ++ M H+R V +P+ C+ CGK F HL H ++VH G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 395 CDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGE--RPVCCH 450
C+ C K+F + + +H+ G+K Y C +CG R K + H+R H G +P C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 451 ICGKKLRGKLKDHMLTH 467
CGK DH+ H
Sbjct: 70 SCGKGF--SRPDHLNGH 84
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 1180 GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVT 1239
G CE C K F +L H + + + C +C F K H++ HD SV
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 1240 -YYPCTVCSKNLSSPYRLKTHM 1260
Y C C K S P L H+
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHI 85
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 73 SVEDMYQCDICSKMFIEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPICGD 132
S C+IC K+F + + + +H+ + EK + CP+CG
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHK-----LSHSGEKPYS--------------CPVCGL 43
Query: 133 RYKSGTDMRRHYRDLHDSTRKCP--CEVCGKRFNSIKRVKQHRKVVHMG 179
R+K M H R HD + P C+ CGK F+ + H K VH G
Sbjct: 44 RFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 156 CEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG-- 213
CE+CGK F + + +H K+ H G +K + C C + + + H+ +H G G
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSG---EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 214 HICEICNRDFYSDAMLKRHL 233
+IC+ C + F L H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHI 85
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 979 CDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGN- 1037
C++CG + V HL RHK+ H SGE P + CP C F + H+ G+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSH---SGEKP----YSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1038 -KCHICKVCGAKI--KGNLQQHM-ETHSGE 1063
K +IC+ CG +L H+ + HSG
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 26/112 (23%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV--HETHA 1349
+G AC++C K F LN H+ H K + C +CG +F + HV H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1350 ILPRVIVTKFKVEDFQFFVCESMQSAKSTCVLCKKVFSTRENCTNHIMECHS 1401
P ++C+S C K FS ++ HI + HS
Sbjct: 63 GKP--------------YICQS----------CGKGFSRPDHLNGHIKQVHS 90
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 1652 TCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFP 1711
C +C KIF + ++L HK H + + C CG F + + H+ S +
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 1712 CRLCSQEFDTKEQRKKHERKDHE 1734
C+ C + F + H ++ H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 328 SNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVL 387
S C CG F H+ H SH+G K + C +C + + H ++H G
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-- 63
Query: 388 RADEMYKCDKCDKLFIEQSEMVQHRDWVH 416
+ Y C C K F + H VH
Sbjct: 64 ---KPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 14 NVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLS 73
V C C + L H SH+G KPY C +C + + H++ H + G+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK-- 64
Query: 74 VEDMYQCDICSKMFIEHHAMVKHRDWLHA 102
Y C C K F + H +H+
Sbjct: 65 ---PYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 577 IECNICGALFATKYTLQDHMNTHTGNK-YKCDVC 609
+ C ICG +F Y L H +H+G K Y C VC
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1868 SCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHD---AQPHT 1924
+C++C Y+L +HK H + C +C L F K+ + H ++ HD +P+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYI 67
Query: 1925 C 1925
C
Sbjct: 68 C 68
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 1156 VFCKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKT--LFE 1213
V C+ C F HL+ H + G P+ C C F K ++ HV+ + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 1214 CNICLKTFNFKTSYKRHLKQ 1233
C C K F+ H+KQ
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 839 SCEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGI 898
+CE C KIF L RH H G + C CG+ K + H+ +H G
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSG------EKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 899 --KPYCCIFCEEKYFSKKSLKRH 919
KPY C C + + L H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH 84
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F + H K+HL KD
Sbjct: 68 CGRKFARSDERKRHTKIHLRQKD 90
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ +L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ +L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1324 DFICDLCGAKF 1334
F CD+CG KF
Sbjct: 62 PFACDICGRKF 72
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSRSAELTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F +E+ +H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F + L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S ++L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F R+ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+ + L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F EL H I+ H Q P C +C + F +LTTH + H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ +L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F EL H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLK 1849
K CD+CG+ FAR+ K H + +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F++ + L H ++H K F C +C F + TH+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C ++ L +H H C+IC F + L H +P C +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKI 1659
C +R L +H H + C+ C F + L H +P C +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1660 FVNKFNLTTHKKLHL 1674
F H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 1824 CQCDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQKYYLV 1883
C + C + F+R+ L HI + H Q F C +C ++ +L
Sbjct: 7 CPVESCDRRFSRSAELTRHI---------------RIHTGQKPFQCRICMRNFSRSDHLT 51
Query: 1884 KHKSRHIKDYNVFCKICQLGFLSKNELDVHN 1914
H H + C IC F +E H
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 956 CP--KCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPP 1008
CP C++ FS + +H+R K F+C +C ++ HL H H +GE P
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGEKP- 62
Query: 1009 SMIHKCPTCYKIFTENHALKKH 1030
C C + F + K+H
Sbjct: 63 ---FACDICGRKFARSDERKRH 81
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F + H K+HL KD
Sbjct: 68 CGRKFARSDERKRHTKIHLRQKD 90
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 1267 RVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
R + C V C + F L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 1325 FICDLCGAKF 1334
F CD+CG KF
Sbjct: 63 FACDICGRKF 72
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F D S L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F +L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F + S + +H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S++L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S S L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKR 1850
+P+ CPV C + F + L H +IH K QC +C ++F+R+ HL +HI
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHI------- 54
Query: 1851 EQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
+ H + F+CD+C +K+ + RH K
Sbjct: 55 --------RTHTGEKPFACDICG----RKFARSDERKRHTK 83
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+++ L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F + L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F + L H I+ H Q P C +C + F +LTTH + H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F + L H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLKRE 1851
K CD+CG+ FAR+ K H + +HL+++
Sbjct: 61 KPFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F+ S L H ++H K F C +C F + TH+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C + L +H H C+IC F + L H +P C +C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F + H K+HL KD
Sbjct: 68 CGRKFARSDERKRHTKIHLRQKD 90
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1324 DFICDLCGAKFYEFNTYVTHV 1344
F CD+CG KF + H
Sbjct: 62 PFACDICGRKFARSDERKRHT 82
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSRSADLTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F + L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F +++ +H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S + L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F R+ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+ + L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F +L H I+ H Q P C +C + F +LTTH + H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F +L H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLK 1849
K CD+CG+ FAR+ K H + +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C ++ L +H H C+IC F + L H +P C +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKI 1659
C +R L +H H + C+ C F + L H +P C +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1660 FVNKFNLTTHKKLHL 1674
F H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 956 CP--KCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPP 1008
CP C++ FS + +H+R K F+C +C ++ HL H H +GE P
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGEKP- 62
Query: 1009 SMIHKCPTCYKIFTENHALKKH 1030
C C + F + K+H
Sbjct: 63 ---FACDICGRKFARSDERKRH 81
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F + H K+HL KD
Sbjct: 68 CGRKFARSDERKRHTKIHLRQKD 90
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ +L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ +L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1324 DFICDLCGAKFYEFNTYVTHV 1344
F CD+CG KF + H
Sbjct: 62 PFACDICGRKFARSDERKRHT 82
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSRSDELTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F E+ +H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S +L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F R+ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+ + L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F +EL H I+ H Q P C +C + F +LTTH + H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ ++L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F +EL H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLK 1849
K CD+CG+ FAR+ K H + +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C ++ L +H H C+IC F + L H +P C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKI 1659
C +R L +H H + C+ C F + L H +P C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1660 FVNKFNLTTHKKLHL 1674
F H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 956 CP--KCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPP 1008
CP C++ FS + +H+R K F+C +C ++ HL H H +GE P
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGEKP- 62
Query: 1009 SMIHKCPTCYKIFTENHALKKH 1030
C C + F + K+H
Sbjct: 63 ---FACDICGRKFARSDERKRH 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHLNIKD 1324
C ++F + H K+HL KD
Sbjct: 68 CGRKFARSDERKRHTKIHLRQKD 90
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ G L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRHTERGD 528
P+ C+ CG FA H K H + D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ G L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 1077 GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
G L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 1137 LHLKKH 1142
H K H
Sbjct: 80 RHTKIH 85
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F Q L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1324 DFICDLCGAKF 1334
F CD+CG KF
Sbjct: 62 PFACDICGRKF 72
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F + + +H G K + C+IC + L H+R HTGE+P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 65 CDICGRKF 72
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+++ +L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKR 1850
+P+ CPV C + F +L H +IH K QC +C ++F+R+ HL +HI
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHI------- 54
Query: 1851 EQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
+ H + F+CD+C +K+ + RH K
Sbjct: 55 --------RTHTGEKPFACDICG----RKFARSDERKRHTK 83
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F ++ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F L H I+ H Q P C +C + F +LTTH + H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 61 KPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F+Q +L H ++H K F C +C F + TH+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F L H I+ H Q P C +C + F L H + H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLKRE 1851
K CD+CG+ FAR+ K H + +HL+++
Sbjct: 61 KPFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 27/75 (36%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C +Q L +H H C+IC F + L H +P C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 57/131 (43%), Gaps = 29/131 (22%)
Query: 644 CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGSLKEHMIVHTGERKYCCHICGKKMR 703
C K+F N +RKHL HG + H C CG S
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVES------------------------ 47
Query: 704 GKLKEHMLTHTGERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCS--ECGQSFAAR 759
KLK H L HTGE+P+ C E CG F + L H+R H G+RPY+C C + FA
Sbjct: 48 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107
Query: 760 SAFSLHLKKHA 770
+ H+ HA
Sbjct: 108 TNLKSHILTHA 118
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 429 RVKSNLKAHMRIHTGERPVCCHICGKKL--RGKLKDHMLTHTGERPFGC--EVCGSTYKY 484
R S ++ H+ H G R C CGK KLK H L HTGE+PF C E CG +
Sbjct: 18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76
Query: 485 KYYLAVHMRKHTGERPYVCNY--CGHSFAARPAFNLHLKRHTE 525
+ L H+R HTG+RPYVC + C FA H+ H +
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 1217 CLKTFNFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTC--EVC 1274
C K F ++ ++HL H V + C C K +LK H L+H + F C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 1275 GKGFIQKRYLEEHKRVHTGYKPYAC--DLCSKQFTQKSTLNIHRKLHLNIKD 1324
GK F L H R+HTG +PY C D C+K+F Q + L H H K+
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 1246 CSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL--CS 1303
C+K ++ H+ H RV C CGK F++ L+ H+ VHTG KP+ C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 1304 KQFTQKSTLNIHRKLHLNIKDFIC--DLCGAKFYEFNTYVTHVHETHA 1349
K+F+ L H ++H + ++C D C KF + +H+ THA
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTHA 118
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 389 ADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKI--CGAR--VKSNLKAHMRIHTGE 444
++ C +C K F+E S++ +H+ G+K + C CG R + NL+ H+RIHTG+
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 445 RPVCCHI--CGKKL--RGKLKDHMLTHT 468
RP C C KK LK H+LTH
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 804 LRDKVRICP--KCNKEFYSDRTMRRHL----KQVHIEIKTFSCEECDKIFATREKLQRHW 857
+ + CP C K F + MR+HL +VH+ C EC K F KL+RH
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV------CAECGKAFVESSKLKRH- 53
Query: 858 NYIHQGIRNTGPNQLLECHY--CGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSK 913
+H G + +C + CG + LR H+ H G +PY C F C +K+
Sbjct: 54 QLVHTG------EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107
Query: 914 KSLKRHEAKHNKVYN 928
+LK H H K N
Sbjct: 108 TNLKSHILTHAKAKN 122
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 130 CGDRYKSGTDMRRHYRDLHD-STRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFEC 188
C ++ + MR+H LH R C CGK F ++K+H ++VH G +K F+C
Sbjct: 13 CTKMFRDNSAMRKH---LHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTG---EKPFQC 65
Query: 189 AH--CSKTYLSRVGLEDHINNHTGEKGHICEI--CNRDFYSDAMLKRHLVKHSR 238
C K + L H+ HTG++ ++C CN+ F LK H++ H++
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFS 1136
+ +H+ TH G R + C CG +F + S L+ H H GE+PF C+ CG+ F+
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 1137 LHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
H++ H G Y CN F ST+L SH
Sbjct: 82 THVRIHTGDRP------YVCPFDGCNKKFAQSTNLKSH 113
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 1170 HLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNI--CLKTFNFKTSY 1227
HLH+HG +VH +C C K F L H + + F+C C K F+ +
Sbjct: 26 HLHTHGPRVH-----VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 1228 KRHLKQHDDSVTYY-PCTVCSKNLSSPYRLKTHMLIHA 1264
+ H++ H Y P C+K + LK+H+L HA
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 32/110 (29%)
Query: 1011 IHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIKGNLQQHMETHSGEKKICCHI 1070
+H C C K F E+ LK+ H H+GEK C
Sbjct: 34 VHVCAECGKAFVESSKLKR--------------------------HQLVHTGEKPFQCTF 67
Query: 1071 --CGKK--LRGRLNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKH 1114
CGK+ L L H+ HTG+RPY C F C F + L+ HI H
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 1125 CGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLPPF 1184
C + F SA ++KH +H R H+ C EC F S+ L H + G PF
Sbjct: 13 CTKMFRDNSA----MRKHLHTHGPRVHV-----CAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 1185 IC--EHCSKPFTSKGNLTVHVKYYHAKTLFECNI--CLKTFNFKTSYKRHLKQH 1234
C E C K F+ NL HV+ + + C C K F T+ K H+ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 265 RVKTCP--LCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGV 322
R CP C K ++ MR H+ +V H C CGK F L +H+ VH G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQ-LVHTGE 60
Query: 323 KKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSI--CQSTYTTARGLKRHNKNH 380
K + FE CG +F ++ H+ HTG + +VC C + + LK H H
Sbjct: 61 KPFQ-CTFE--GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 381 LR 382
+
Sbjct: 118 AK 119
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 182 QKKKFECAH--CSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRM 239
+ + C H C+K + + H++ H G + H+C C + F + LKRH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH------- 53
Query: 240 IKETSEEFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCK 299
+ V TG E+ ++ + C K + +R H+R +H+ RP+ C
Sbjct: 54 ------QLVHTG----EKPFQCTFEG------CGKRFSLDFNLRTHVR-IHTGDRPYVCP 96
Query: 300 --GCGKYFKSQRHLVQH 314
GC K F +L H
Sbjct: 97 FDGCNKKFAQSTNLKSH 113
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 295 PHQCKGCGKYFKS----QRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMT 350
PH KGC K F+ ++HL H RVH+ C CG F+ + + H
Sbjct: 9 PH--KGCTKMFRDNSAMRKHLHTHGPRVHV-----------CAECGKAFVESSKLKRHQL 55
Query: 351 SHTGIKNHVCSI--CQSTYTTARGLKRHNKNHLREAGVLRADEMYKC--DKCDKLFIEQS 406
HTG K C+ C ++ L+ H + H D Y C D C+K F + +
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT-------GDRPYVCPFDGCNKKFAQST 108
Query: 407 EMVQH 411
+ H
Sbjct: 109 NLKSH 113
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 636 SKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKV--CGA--EIKGSLKEHMIVHTGER 691
++ C C K F+ + L++H G K C CG + +L+ H+ +HTG+R
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 692 KYCCHI--CGKKM--RGKLKEHMLTHT 714
Y C C KK LK H+LTH
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 949 VQSKERKCP--KCEKEFSTPRYMRKHL----RKKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
++ + CP C K F MRKHL + C CG + LKRH++ H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVH--- 57
Query: 1003 SGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK----GNLQQHME 1058
+GE P + C K F+ + L+ H+ G++ ++C G K NL+ H+
Sbjct: 58 TGEKPFQCTFE--GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 1059 THSGEK 1064
TH+ K
Sbjct: 116 THAKAK 121
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQA 68
C R+S L H+ HTG +PY+C C + + LK H+ H +A
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 1769 CKICQLGFLSKNELDVHNIKQHDAQPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKN--C 1824
C C F+ ++L H + +P C C K F L H +IH D+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG-DRPYVC 95
Query: 1825 QCDVCGKSFARTFHLKSHI 1843
D C K FA++ +LKSHI
Sbjct: 96 PFDGCNKKFAQSTNLKSHI 114
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 1618 IKEYTVFC--KKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLP 1675
++ T+ C K C F + + H + H + H C C K FV L H+ +H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHT- 58
Query: 1676 MNRNHQC--DTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKH 1728
+ QC + CGK F+ + +L+ H+ R P C+++F K H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACD 1300
+ C C ++ + Y L H H + R +TC++C K F ++ +L +H+ +H+ KP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 1301 LCSKQFTQKSTLNIHRKLHLNI 1322
C K F Q TL +H+ LH+
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQT 99
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1063 EKKICCHICGKKLRGRLNE--HMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPF 1120
+K+ C CG+ N H THT ERPY C+ C +F+ + +LR H H+ E+PF
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 1121 TCSECGQSFAARSAFSLH 1138
C ECG+ F ++H
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 1261 LIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHL 1320
L + F C+ CG+ F + L H+R HT +PY CD+C K F ++ L HR +H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 1321 NIKDFICDLCGAKFYEFNTYVTH 1343
K F C CG F + T H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVH 92
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 421 YLCKICGARVKS--NLKAHMRIHTGERPVCCHICGKKLRGK--LKDHMLTHTGERPFGCE 476
++CK CG NL H R HT ERP C IC K R + L+DH H+ E+PF C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 477 VCGSTYKYKYYLAVHMRKH 495
CG + LAVH H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 690 ERKYCCHICGKKMRGK--LKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPY 747
++++ C CG+ L H THT ERPY C+IC F+ + +L H H+ E+P+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 748 MCSECGQSFAARSAFSLH 765
C ECG+ F ++H
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 29/108 (26%)
Query: 1184 FICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVTYYPC 1243
FIC+ C + FT NL +H + + + + C+IC K F ++ D
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF----------RRQD-------- 59
Query: 1244 TVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVH 1291
L+ H IH+ + F C+ CGKGF Q R L HK +H
Sbjct: 60 -----------HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 669 CKVCGAEIKGS--LKEHMIVHTGERKYCCHICGKKMRGK--LKEHMLTHTGERPYACEIC 724
CK CG S L H HT ER Y C IC K R + L++H H+ E+P+ C+ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 725 GGTFKTKWYLGVHMRKH 741
G F L VH H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 1041 ICKVCGAKIKG--NLQQHMETHSGEKKICCHICGKKLRGR--LNEHMLTHTGERPYACEF 1096
ICK CG NL H TH+ E+ C IC K R + L +H H+ E+P+ C+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 1097 CGSSFKDKSYLRIH 1110
CG F L +H
Sbjct: 79 CGKGFCQSRTLAVH 92
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 449 CHICGKKLRGK--LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYC 506
C CG+ L H THT ERP+ C++C ++ + +L H H+ E+P+ C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 507 GHSFAARPAFNLHLKRHTE 525
G F +H H +
Sbjct: 80 GKGFCQSRTLAVHKTLHMQ 98
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 1730 RKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQ 1789
R +T+ F C C T+ Y L+ H+ H + C IC F ++ L H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 1790 HDAQPHTCPVCKKIFVNKVTLAAHKKIHL 1818
+P C C K F TLA HK +H+
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1084 LTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHA 1143
L ++ + C+FCG F L IH R H ERP+TC C ++F + HL+ H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD----HLRDHR 65
Query: 1144 GSHILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
H + C+EC GF S L H
Sbjct: 66 YIHSKEKPFK----CQECGKGFCQSRTLAVH 92
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 465 LTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
L ++ F C+ CG + Y L +H R HT ERPY C+ C +F + H H+
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 525 ERGDVRHIEC 534
+ + EC
Sbjct: 70 KEKPFKCQEC 79
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 1586 RKDHETRGVFSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQ 1645
R +T+ F C C T+ Y L+ H+ H E C C F ++ L H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 1646 HDAQPHTCPVCKKIFVNKFNLTTHKKLHL 1674
+P C C K F L HK LH+
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 711 LTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHA 770
L ++ + C+ CG F + L +H R H ERPY C C ++F + H H+
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 771 GFKQTIECEYCHNTF 785
++ +C+ C F
Sbjct: 70 K-EKPFKCQECGKGF 83
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 1653 CPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPC 1712
C C + F +NL H++ H R + CD C K+F +HL+ H Y +H K + F C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTD-ERPYTCDICHKAFRRQDHLRDHRY-IHSK-EKPFKC 76
Query: 1713 RLCSQEF 1719
+ C + F
Sbjct: 77 QECGKGF 83
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1565 KFPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTSTRKYYLVKHKSRHIKEYTVF 1624
+F C+ C + F HER H ++CD+C R+ +L H+ H KE
Sbjct: 17 EFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 1625 CKKCQLGFLSKNELNVH 1641
C++C GF L VH
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 264 QRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHE 315
+R TC +C K ++ +R H R +HSK +P +C+ CGK F R L H+
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVED 76
C C ++ LL H +HT +PY C IC ++ L+ H H S E
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-------SKEK 72
Query: 77 MYQCDICSKMFIEHHAMVKHR 97
++C C K F + + H+
Sbjct: 73 PFKCQECGKGFCQSRTLAVHK 93
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 178 MGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHS 237
+ K KK+F C C + + L H HT E+ + C+IC++ F L+ H HS
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 238 R 238
+
Sbjct: 70 K 70
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1709 KFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVF 1768
+F C+ C + F HER H + ++CD+C ++ +L H+ H K+
Sbjct: 17 EFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 1769 CKICQLGFLSKNELDVH 1785
C+ C GF L VH
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 298 CKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKN 357
CK CG++F +L+ HER H + + C C F + H+ DH H+ K
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERP-----YTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 358 HVCSICQSTYTTARGLKRHNKNHLREAGVLRAD 390
C C + +R L H H++ + A
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 329 NFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLR 388
F C CG F ++ H +HT + + C IC + L+ H H +E
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE----- 71
Query: 389 ADEMYKCDKCDKLFIEQSEMVQHR 412
+ +KC +C K F + + H+
Sbjct: 72 --KPFKCQECGKGFCQSRTLAVHK 93
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1797 CPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKREQRKKH 1856
C C + F L H++ H ++ CD+C K+F R HL+ H
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTD-ERPYTCDICHKAFRRQDHLRDH-------------- 64
Query: 1857 ERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
R H + F C C Q L HK+ H++
Sbjct: 65 -RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 1826 CDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKH 1885
C CG+ F ++++L H + H + ++CD+C ++ +L H
Sbjct: 20 CKFCGRHFTKSYNLLIH---------------ERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 1886 KSRHIKDYNVFCKICQLGFLSKNELDVH 1913
+ H K+ C+ C GF L VH
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 356 KNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRDWV 415
K +C C +T + L H + H E Y CD C K F Q + HR
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDE-------RPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 416 HGDKCYLCKICG 427
+K + C+ CG
Sbjct: 69 SKEKPFKCQECG 80
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 947 ELVQSKERK--CPKCEKEFSTPRYMRKHL-----RKKFKCDVCGNGYTSVKHLKRHKIKH 999
E + ER C C K F ++R H K FKC CG G+ + L HK H
Sbjct: 37 ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Query: 1000 MKESGELPPS 1009
M+ S S
Sbjct: 97 MQTSSPTAAS 106
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 579 CNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGY 613
C CG F Y L H THT + Y CD+C +
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268-
Dna Complex At 2.1 Angstroms
Length = 87
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1302 CSKQFTQKSTLNIHRKLHL 1320
C ++F + H K+HL
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ +L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 500 PYVCNYCGHSFAARPAFNLHLKRH 523
P+ C+ CG FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ +L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 1139 LKKH 1142
K H
Sbjct: 82 TKIH 85
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1324 DFICDLCGAKF 1334
F CD+CG KF
Sbjct: 62 PFACDICGRKF 72
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 148 HDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINN 207
H+ CP E C +RF+ + +H ++ H G +K F+C C + + L HI
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 208 HTGEKGHICEICNRDFYSDAMLKRHLVKHSR 238
HTGEK C+IC R F KRH H R
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 390 DEMYKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGER 445
+ Y C + CD+ F E+ +H G K + C+IC + L H+R HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 446 PVCCHICGKKL 456
P C ICG+K
Sbjct: 62 PFACDICGRKF 72
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 60
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 61 KPFACDICGRKFA 73
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 56
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLR 382
HTG K C IC + + KRH K HLR
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S +L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 64
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 5 YACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F R+ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 697 ICGKKM 702
ICG+K
Sbjct: 67 ICGRKF 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 1649 QPHTCPV--CKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKR 1706
+P+ CPV C + F LT H ++H + QC C ++F+ ++HL HI + H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 1707 DTKFPCRLCSQEFDTKEQRKKH 1728
+ F C +C ++F ++RK+H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+ + L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 67 ICGRKF 72
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKR 1850
+P+ CPV C + F L H +IH K QC +C ++F+R+ HL +HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHI------- 54
Query: 1851 EQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
+ H + F+CD+C +K+ + RH K
Sbjct: 55 --------RTHTGEKPFACDICG----RKFARSDERKRHTK 83
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 470 ERPFGCEV--CGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
ERP+ C V C + L H+R HTG++P+ C C +F+ H++ HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1761 HIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLP 1819
H + Y + C F +EL H I+ H Q P C +C + F L H + H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 1820 IDKNCQCDVCGKSFARTFHLKSHISSVHLK 1849
+K CD+CG+ FAR+ K H + +HL+
Sbjct: 60 -EKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ ++L RH IH G + +C C + L HI H G KP
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F++ L H ++H K F C +C F + TH+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 1683 DTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCD 1742
++C + F+ ++ L RHI +H + F CR+C + F + H R H + F+CD
Sbjct: 10 ESCDRRFSRSDELTRHI-RIHTGQKP-FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 1743 LCSYTSTQKYYLVKHKSRHIK 1763
+C +K+ + RH K
Sbjct: 67 ICG----RKFARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 335 CGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYK 394
C +F + H+ HTG K C IC ++ + L H + H ++ +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-------GEKPFA 64
Query: 395 CDKCDKLFIEQSEMVQH 411
CD C + F E +H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 30/86 (34%)
Query: 1733 HETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDA 1792
HE + C ++ L +H H C+IC F + L H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHL 1818
+P C +C + F H KIHL
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 30/86 (34%)
Query: 1589 HETRGVFSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDA 1648
HE + C +R L +H H + C+ C F + L H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHL 1674
+P C +C + F H K+HL
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMK 1001
+C C + FS ++ H+R K F CD+CG + KRH H++
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 956 CP--KCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPP 1008
CP C++ FS + +H+R K F+C +C ++ HL H H +GE P
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGEKP- 62
Query: 1009 SMIHKCPTCYKIFTENHALKKH 1030
C C + F + K+H
Sbjct: 63 ---FACDICGRKFARSDERKRH 81
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
P C + S L H+ IH + F C +C + F + +L H R HTG KP+ACD+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 1302 CSKQFTQKSTLNIHRKLHL 1320
C ++F + H K+HL
Sbjct: 67 CGRKFARSDERKRHTKIHL 85
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 444 ERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERP C + C ++ +L H+ HTG++PF C +C + +L H+R HTGE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 500 PYVCNYCGHSFAARPAFNLHLKRH 523
P+ C+ CG FA H K H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 ERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
ER Y C + C ++ +L H+ HTG++P+ C IC F +L H+R H GE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 746 PYMCSECGQSFAARSAFSLHLKKH 769
P+ C CG+ FA H K H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H+ HTG++P+ C C +F +L HIR H GE+PF C CG+ FA H
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Query: 1139 LKKH 1142
K H
Sbjct: 81 TKIH 84
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1266 NRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 1324 DFICDLCGAKF 1334
F CD+CG KF
Sbjct: 61 PFACDICGRKF 71
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKG 213
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HTGEK
Sbjct: 6 CPVESCDRRFSRSDELTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 214 HICEICNRDFYSDAMLKRHLVKHSR 238
C+IC R F KRH H R
Sbjct: 62 FACDICGRKFARSDERKRHTKIHLR 86
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 393 YKC--DKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHTGERPVC 448
Y C + CD+ F E+ +H G K + C+IC + L H+R HTGE+P
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 449 CHICGKKL 456
C ICG+K
Sbjct: 64 CDICGRKF 71
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 716 ERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
ERPYAC E C F L H+R H G++P+ C C ++F+ + H++ H G +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 59
Query: 774 QTIECEYCHNTFT 786
+ C+ C F
Sbjct: 60 KPFACDICGRKFA 72
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 294 RPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTS 351
RP+ C + C + F L +H R +H G K F+C C F H+ H+ +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRT 55
Query: 352 HTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
HTG K C IC + + KRH K HLR+
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1089 ERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERPYAC E C F L HIR H G++PF C C ++F+ + H++ H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S +L H+ HTG KP+ C IC ++ + L H++ H TG E +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFA 63
Query: 80 CDICSKMFIEHHAMVKH 96
CDIC + F +H
Sbjct: 64 CDICGRKFARSDERKRH 80
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1154 YTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLF 1212
Y + C+ F S L H I++H G PF C C + F+ +LT H++ + + F
Sbjct: 4 YACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 1213 ECNICLKTFNFKTSYKRHLKQH 1234
C+IC + F KRH K H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 641 CPI--CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCH 696
CP+ C + F R+ L +H+ G K C++C S L H+ HTGE+ + C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 697 ICGKKM 702
ICG+K
Sbjct: 66 ICGRKF 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 12 QLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
Q +C C +S L H+ +HTG KP+ C IC + + KRH K H++
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 86
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 1649 QPHTCPV--CKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVHLKR 1706
+P+ CPV C + F LT H ++H + QC C ++F+ ++HL HI + H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 58
Query: 1707 DTKFPCRLCSQEFDTKEQRKKH 1728
+ F C +C ++F ++RK+H
Sbjct: 59 EKPFACDICGRKFARSDERKRH 80
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1014 CP--TCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCH 1069
CP +C + F+ + L +H+ G K C++C +L H+ TH+GEK C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 1070 ICGKKL 1075
ICG+K
Sbjct: 66 ICGRKF 71
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1619 KEYTVFCKKCQLGFLSKNELNVHNIKQHDAQ-PHTCPVCKKIFVNKFNLTTHKKLHLPMN 1677
+ Y + C F +EL H I+ H Q P C +C + F +LTTH + H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 59
Query: 1678 RNHQCDTCGKSFTGNNHLKRHIYSVHLK 1705
+ CD CG+ F ++ KRH +HL+
Sbjct: 60 KPFACDICGRKFARSDERKRHT-KIHLR 86
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 470 ERPFGCEV--CGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
ERP+ C V C + L H+R HTG++P+ C C +F+ H++ HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKR 1850
+P+ CPV C + F L H +IH K QC +C ++F+R+ HL +HI
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHI------- 53
Query: 1851 EQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIK 1891
+ H + F+CD+C +K+ + RH K
Sbjct: 54 --------RTHTGEKPFACDICG----RKFARSDERKRHTK 82
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 841 EECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKP 900
E CD+ F+ ++L RH IH G + +C C + L HI H G KP
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTG------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 901 YCCIFCEEKYFSKKSLKRHEAKH 923
+ C C K+ KRH H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 1763 KDYNVFCKICQLGFLSKNELDVHNIKQHDAQ-PHTCPVCKKIFVNKVTLAAHKKIHLPID 1821
+ Y + C F +EL H I+ H Q P C +C + F L H + H +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-E 59
Query: 1822 KNCQCDVCGKSFARTFHLKSHISSVHLK 1849
K CD+CG+ FAR+ K H + +HL+
Sbjct: 60 KPFACDICGRKFARSDERKRH-TKIHLR 86
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F++ L H ++H K F C +C F + TH+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 53
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 1683 DTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCD 1742
++C + F+ ++ L RHI +H + F CR+C + F + H R H + F+CD
Sbjct: 9 ESCDRRFSRSDELTRHI-RIHTGQKP-FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 65
Query: 1743 LCSYTSTQKYYLVKHKSRHIK 1763
+C +K+ + RH K
Sbjct: 66 ICG----RKFARSDERKRHTK 82
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 1744 CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKI 1803
C ++ L +H H C+IC F + L H +P C +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 1804 FVNKVTLAAHKKIHL 1818
F H KIHL
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+ +C IC F+ L H+ THTG K + CD+C ++
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 72
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKE 1002
+C C + FS ++ H+R K F CD+CG + KRH H+++
Sbjct: 35 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKI 1659
C +R L +H H + C+ C F + L H +P C +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 1660 FVNKFNLTTHKKLHL 1674
F H K+HL
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 956 CP--KCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPP 1008
CP C++ FS + +H+R K F+C +C ++ HL H H +GE P
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---TGEKP- 61
Query: 1009 SMIHKCPTCYKIFTENHALKKH 1030
C C + F + K+H
Sbjct: 62 ---FACDICGRKFARSDERKRH 80
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 452 CGKKL--RGKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHS 509
CGK + + HM H G RP+GC VCG +K K++L HM+ HTG +PY CN C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 510 FAARPAFNLHL 520
F R +F+ H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACD 1300
YPC C K+ + + HM +H R + C VCGK F K +L H ++HTG KPY C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 1301 LCSKQFTQKSTLNIH 1315
+C+K+F + + + H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+ ++++ C+ CGK F K + H +H G +PY C +C K+F K L H K+H IK
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 1324 DFICDLCGAKFYEFNTYVTHV 1344
+ C++C +F +++ HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 688 TGERKYCCHICGKKM--RGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
+G++ Y C CGK + + HM H G RPY C +CG FK K +L HM+ H G +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 746 PYMCSECGQSFAARSAFSLHL 766
PY C+ C + F R +F H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 1061 SGEKKICCHICGKKL--RGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
SG+K C CGK + + + HM H G RPY C CG FK K +L H++ H G +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 1119 PFTCSECGQSFAARSAFSLHL 1139
P+ C+ C + F R +F H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 417 GDKCYLCKICGARV--KSNLKAHMRIHTGERPVCCHICGKKLRGK--LKDHMLTHTGERP 472
GDK Y C+ CG KS HM +H G RP C +CGKK + K L HM HTG +P
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 473 FGCEVCGSTYKYK 485
+ C +C + ++
Sbjct: 66 YECNICAKRFMWR 78
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 663 GNKYHSCKVCGAEI--KGSLKEHMIVHTGERKYCCHICGKKMRGK--LKEHMLTHTGERP 718
G+K + C+ CG K HM +H G R Y C +CGKK + K L HM HTG +P
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 719 YACEICGGTF 728
Y C IC F
Sbjct: 66 YECNICAKRF 75
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 389 ADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGAR--VKSNLKAHMRIHTGERP 446
D++Y C +C K F +S+ +H G + Y C +CG + +K +L HM+IHTG +P
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 447 VCCHICGKKL 456
C+IC K+
Sbjct: 66 YECNICAKRF 75
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
+G++ Y C+ CG +F K HM H G RPY C CG+ F + H+K H G K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 774 QTIECEYCHNTFTF 787
EC C F +
Sbjct: 65 -PYECNICAKRFMW 77
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAH 895
K + C+ C K F + + RH + +H G+R G C CG K L H+ H
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYG------CGVCGKKFKMKHHLVGHMKIH 60
Query: 896 LGIKPYCCIFCEEKYFSKKSLKRHEAKHNKVYNKAQYQ 933
GIKPY C C +++ + S RH K Y A+ +
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAE 98
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 1180 GLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHL 1231
GL P+ C C K F K +L H+K + +ECNIC K F ++ S+ RH+
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C ++ KSQ H++ H GL+PY C +C + +K HL HM+ + Y+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK----MKHHLVGHMKIHTGIKP---YE 67
Query: 80 CDICSKMFIEHHAMVKH 96
C+IC+K F+ + +H
Sbjct: 68 CNICAKRFMWRDSFHRH 84
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 301 CGKYF--KSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKNH 358
CGK F KSQR +HLG++ + C CG KF + H+ HM HTGIK +
Sbjct: 15 CGKSFTHKSQR---DRHMSMHLGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 359 VCSICQSTYTTARGLKRH 376
C+IC + RH
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 288 EVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIAD 347
+H +RP+ C CGK FK + HLV H ++H G+K +EC C +F+ R
Sbjct: 30 SMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKP-----YECNICAKRFMWRDSFHR 83
Query: 348 HMTSHTGIKNHVCSICQSTYTTARG 372
H+TS T K++ + + T A G
Sbjct: 84 HVTSCT--KSYEAAKAEQNTTEASG 106
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+G++ Y C+ CG SF KS H+ H G RP+ C CG+ F + H+K H G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 1772 CQLG--FLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVC 1829
CQ G F K++ D H +P+ C VC K F K L H KIH I K +C++C
Sbjct: 13 CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-KPYECNIC 71
Query: 1830 GKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFS 1868
K F H++S K + K E+ E G S
Sbjct: 72 AKRFMWRDSFHRHVTSC-TKSYEAAKAEQNTTEASGPSS 109
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHVHETHAIL 1351
+G K Y C C K FT KS + H +HL ++ + C +CG KF + V H+ I
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 1352 P 1352
P
Sbjct: 65 P 65
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1627 KCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCG 1686
+C F K++ + H +P+ C VC K F K +L H K+H + + ++C+ C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-KPYECNICA 72
Query: 1687 KSFTGNNHLKRHIYS 1701
K F + RH+ S
Sbjct: 73 KRFMWRDSFHRHVTS 87
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHL 62
C C ++ K L+ H+ HTG+KPY C+IC ++ RH+
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 644 CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCHICGKK 701
C K F +H+ G + + C VCG + K L HM +HTG + Y C+IC K+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 702 M 702
Sbjct: 75 F 75
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1017 CYKIFTENHALKKHLDWVHGNKCHICKVCGAK--IKGNLQQHMETHSGEKKICCHICGKK 1074
C K FT +H+ G + + C VCG K +K +L HM+ H+G K C+IC K+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 1075 LRGRLNEH 1082
R + H
Sbjct: 75 FMWRDSFH 82
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 155 PCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGH 214
PC+ CGK F + +H + H+G++ + C C K + + L H+ HTG K +
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSM-HLGLRP---YGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 215 ICEICNRDFYSDAMLKRHLV 234
C IC + F RH+
Sbjct: 67 ECNICAKRFMWRDSFHRHVT 86
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 130 CGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECA 189
CG + + RH +H R C VCGK+F + H K +H GIK +EC
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKP---YECN 69
Query: 190 HCSKTYLSRVGLEDHINN 207
C+K ++ R H+ +
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 579 CNICGALFATKYTLQDHMNTHTGNK-YKCDVC 609
C +CG F K+ L HM HTG K Y+C++C
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 1189 CSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDDSVTYYPCTVCSK 1248
C K FT K H+ + + C +C K F K H+K H + Y C +C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYECNICAK 73
Query: 1249 NL 1250
Sbjct: 74 RF 75
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 1707 DTKFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYN 1766
D +PC+ C + F K QR +H H + C +C K++LV H H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 1767 VFCKICQLGFLSKNELDVH 1785
C IC F+ ++ H
Sbjct: 66 YECNICAKRFMWRDSFHRH 84
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 335 CGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYK 394
CG F ++ HM+ H G++ + C +C + +K H H++ + + Y+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK----MKHHLVGHMK---IHTGIKPYE 67
Query: 395 CDKCDKLFIEQSEMVQH 411
C+ C K F+ + +H
Sbjct: 68 CNICAKRFMWRDSFHRH 84
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 89
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1079 LNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
L H+ THTGE+PY C++ CG F L H RKH G RPF C +C ++F+ +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 1137 LHLKKH 1142
LH+K+H
Sbjct: 83 LHMKRH 88
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 706 LKEHMLTHTGERPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFS 763
LK H+ THTGE+PY C+ CG F L H RKH G RP+ C +C ++F+ +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 764 LHLKKH 769
LH+K+H
Sbjct: 83 LHMKRH 88
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 460 LKDHMLTHTGERPFGCEVCGSTYKYKYY--LAVHMRKHTGERPYVCNYCGHSFAARPAFN 517
LK H+ THTGE+P+ C+ G +K+ L H RKHTG RP+ C C +F+
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 518 LHLKRH 523
LH+KRH
Sbjct: 83 LHMKRH 88
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 432 SNLKAHMRIHTGERPVCCHI--CGKKL--RGKLKDHMLTHTGERPFGCEVCGSTYKYKYY 487
S+LKAH+R HTGE+P C CG K +L H HTG RPF C+ C + +
Sbjct: 21 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH 80
Query: 488 LAVHMRKH 495
LA+HM++H
Sbjct: 81 LALHMKRH 88
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1246 CSKNLSSPYRLKTHMLIHANNRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCS 1303
C K + LK H+ H + + C+ CG F + L H R HTG++P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 1304 KQFTQKSTLNIHRKLHL 1320
+ F++ L +H K H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1270 TCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDL--CSKQFTQKSTLNIHRKLHLNIKDF 1325
TC+ CGK + + +L+ H R HTG KPY CD C +F + L H + H + F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 1326 ICDLCGAKFYEFNTYVTHV 1344
C C F + H+
Sbjct: 67 QCQKCDRAFSRSDHLALHM 85
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 680 LKEHMIVHTGERKYCCHI--CGKKM--RGKLKEHMLTHTGERPYACEICGGTFKTKWYLG 735
LK H+ HTGE+ Y C CG K +L H HTG RP+ C+ C F +L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 736 VHMRKH 741
+HM++H
Sbjct: 83 LHMKRH 88
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 724 CGGTFKTKWYLGVHMRKHNGERPYMCS--ECGQSFAARSAFSLHLKKHAGFKQTIECEYC 781
CG T+ +L H+R H GE+PY C CG FA + H +KH G + +C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 71
Query: 782 HNTFT 786
F+
Sbjct: 72 DRAFS 76
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 478 CGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSFAARPAFNLHLKRHTERGDVRHIECQ 535
CG TY +L H+R HTGE+PY C++ CG FA H ++HT R +CQ
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---RPFQCQ 69
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 40/117 (34%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFSLHLKKHAGSHI 1147
+ C++ CG ++ S+L+ H+R H GE+P+ C CG FA + H +KH G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR- 64
Query: 1148 LRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVK 1204
PF C+ C + F+ +L +H+K
Sbjct: 65 -----------------------------------PFQCQKCDRAFSRSDHLALHMK 86
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 272 CKKTYQSAKGMRLHIREVHSKVRPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSN 329
C KTY + ++ H+R H+ +P+ C GCG F L +H R K H
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR------KHTGHRP 65
Query: 330 FECFHCGAKFISRTHIADHMTSH 352
F+C C F H+A HM H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 30/102 (29%)
Query: 1017 CYKIFTENHALKKHLDWVHGNKCHICKVCGAKIKGNLQQHMETHSGEKKICCHI--CGKK 1074
C K +T++ LK HL TH+GEK C CG K
Sbjct: 13 CGKTYTKSSHLKAHL--------------------------RTHTGEKPYHCDWDGCGWK 46
Query: 1075 L--RGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH 1114
L H HTG RP+ C+ C +F +L +H+++H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C Y+ S L HL +HTG KPY C C + + L RH ++H TG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---TGHRP---- 65
Query: 78 YQCDICSKMF 87
+QC C + F
Sbjct: 66 FQCQKCDRAF 75
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHM 66
C +++ +L H HTG +P+ C C ++ + L H+KRH
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 300 GCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTGIKNHV 359
GCGK + HL H R H G K H +++ CG KF + H HTG +
Sbjct: 12 GCGKTYTKSSHLKAHLR-THTGEKPY-HCDWDG--CGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 360 CSICQSTYTTARGLKRHNKNHL 381
C C ++ + L H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 27/102 (26%)
Query: 878 CGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLKRHEAKHNKVYNKAQYQDY 935
CG T + L+ H+ H G KPY C + C K+ L RH
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH---------------- 56
Query: 936 QIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLRKKF 977
YR+ + +C KC++ FS ++ H+++ F
Sbjct: 57 ---------YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 189 AHCSKTYLSRVGLEDHINNHTGEKGHICEI--CNRDFYSDAMLKRHLVKHS 237
A C KTY L+ H+ HTGEK + C+ C F L RH KH+
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 1679 NHQCD--TCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQ 1736
H CD CGK++T ++HLK H+ + ++ C +F ++ +H RK H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGH 63
Query: 1737 GLFSCDLCSYTSTQKYYLVKHKSRHI 1762
F C C ++ +L H RH
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 1161 CNIGFYSSTHLHSHGIKVHGLPPFICEH--CSKPFTSKGNLTVHVKYYHAKTLFECNICL 1218
C + S+HL +H G P+ C+ C F LT H + + F+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 1219 KTFNFKTSYKRHLKQH 1234
+ F+ H+K+H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 150 STRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAH--CSKTYLSRVGLEDHINN 207
+T C CGK + +K H + H G +K + C C + L H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRT-HTG---EKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 208 HTGEKGHICEICNRDFYSDAMLKRHLVKH 236
HTG + C+ C+R F L H+ +H
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 90
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1079 LNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
L H+ THTGE+PY C++ CG F L H RKH G RPF C +C ++F+ +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 1137 LHLKKH 1142
LH+K+H
Sbjct: 84 LHMKRH 89
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 706 LKEHMLTHTGERPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFS 763
LK H+ THTGE+PY C+ CG F L H RKH G RP+ C +C ++F+ +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 764 LHLKKH 769
LH+K+H
Sbjct: 84 LHMKRH 89
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 460 LKDHMLTHTGERPFGCEVCGSTYKYKYY--LAVHMRKHTGERPYVCNYCGHSFAARPAFN 517
LK H+ THTGE+P+ C+ G +K+ L H RKHTG RP+ C C +F+
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 518 LHLKRH 523
LH+KRH
Sbjct: 84 LHMKRH 89
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 432 SNLKAHMRIHTGERPVCCHI--CGKKL--RGKLKDHMLTHTGERPFGCEVCGSTYKYKYY 487
S+LKAH+R HTGE+P C CG K +L H HTG RPF C+ C + +
Sbjct: 22 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH 81
Query: 488 LAVHMRKH 495
LA+HM++H
Sbjct: 82 LALHMKRH 89
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1246 CSKNLSSPYRLKTHMLIHANNRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCS 1303
C K + LK H+ H + + C+ CG F + L H R HTG++P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 1304 KQFTQKSTLNIHRKLHL 1320
+ F++ L +H K H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1270 TCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDL--CSKQFTQKSTLNIHRKLHLNIKDF 1325
TC+ CGK + + +L+ H R HTG KPY CD C +F + L H + H + F
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 1326 ICDLCGAKFYEFNTYVTHV 1344
C C F + H+
Sbjct: 68 QCQKCDRAFSRSDHLALHM 86
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 680 LKEHMIVHTGERKYCCHI--CGKKM--RGKLKEHMLTHTGERPYACEICGGTFKTKWYLG 735
LK H+ HTGE+ Y C CG K +L H HTG RP+ C+ C F +L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 736 VHMRKH 741
+HM++H
Sbjct: 84 LHMKRH 89
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 724 CGGTFKTKWYLGVHMRKHNGERPYMCS--ECGQSFAARSAFSLHLKKHAGFKQTIECEYC 781
CG T+ +L H+R H GE+PY C CG FA + H +KH G + +C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 72
Query: 782 HNTFT 786
F+
Sbjct: 73 DRAFS 77
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 478 CGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSFAARPAFNLHLKRHTERGDVRHIECQ 535
CG TY +L H+R HTGE+PY C++ CG FA H ++HT R +CQ
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---RPFQCQ 70
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 40/117 (34%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFSLHLKKHAGSHI 1147
+ C++ CG ++ S+L+ H+R H GE+P+ C CG FA + H +KH G
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR- 65
Query: 1148 LRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVK 1204
PF C+ C + F+ +L +H+K
Sbjct: 66 -----------------------------------PFQCQKCDRAFSRSDHLALHMK 87
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 272 CKKTYQSAKGMRLHIREVHSKVRPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSN 329
C KTY + ++ H+R H+ +P+ C GCG F L +H R K H
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR------KHTGHRP 66
Query: 330 FECFHCGAKFISRTHIADHMTSH 352
F+C C F H+A HM H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 30/102 (29%)
Query: 1017 CYKIFTENHALKKHLDWVHGNKCHICKVCGAKIKGNLQQHMETHSGEKKICCHI--CGKK 1074
C K +T++ LK HL TH+GEK C CG K
Sbjct: 14 CGKTYTKSSHLKAHL--------------------------RTHTGEKPYHCDWDGCGWK 47
Query: 1075 L--RGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH 1114
L H HTG RP+ C+ C +F +L +H+++H
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C Y+ S L HL +HTG KPY C C + + L RH ++H TG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---TGHRP---- 66
Query: 78 YQCDICSKMF 87
+QC C + F
Sbjct: 67 FQCQKCDRAF 76
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 291 SKVRPHQCK--GCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADH 348
S+ H C GCGK + HL H R H G K H +++ CG KF + H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPY-HCDWDG--CGWKFARSDELTRH 57
Query: 349 MTSHTGIKNHVCSICQSTYTTARGLKRHNKNHL 381
HTG + C C ++ + L H K H
Sbjct: 58 YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHM 66
C +++ +L H HTG +P+ C C ++ + L H+KRH
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 27/102 (26%)
Query: 878 CGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLKRHEAKHNKVYNKAQYQDY 935
CG T + L+ H+ H G KPY C + C K+ L RH
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH---------------- 57
Query: 936 QIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLRKKF 977
YR+ + +C KC++ FS ++ H+++ F
Sbjct: 58 ---------YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 189 AHCSKTYLSRVGLEDHINNHTGEKGHICEI--CNRDFYSDAMLKRHLVKHS 237
A C KTY L+ H+ HTGEK + C+ C F L RH KH+
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 1679 NHQCD--TCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQ 1736
H CD CGK++T ++HLK H+ + ++ C +F ++ +H RK H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGH 64
Query: 1737 GLFSCDLCSYTSTQKYYLVKHKSRHI 1762
F C C ++ +L H RH
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 150 STRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAH--CSKTYLSRVGLEDHINN 207
+T C CGK + +K H + H G +K + C C + L H
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRT-HTG---EKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 208 HTGEKGHICEICNRDFYSDAMLKRHLVKH 236
HTG + C+ C+R F L H+ +H
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding
Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
Length = 96
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 1068 CHICGK--KLRGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSEC 1125
C +CGK + +L HM HTG +PY C+ C + D S L H+R H+ ERPF C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 1126 GQSFAARSAFSLHLKKHAG 1144
+ S ++HL+ H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 419 KCYLCKICGARVKSNLKAHMRIHTGERPVCCHIC--GKKLRGKLKDHMLTHTGERPFGCE 476
KC +C C +R K LK HMR HTG +P C C L H+ H+ ERPF C+
Sbjct: 10 KCEVCGKCFSR-KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 477 VCGSTYKYKYYLAVHMRKHTGE 498
+C + L VH+R HTG+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 1271 CEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLC 1330
CEVCGK F +K L+ H R HTG KPY C C S+LN H ++H + + F C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 695 CHICGK--KMRGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSEC 752
C +CGK + KLK HM HTG +PY C+ C L H+R H+ ERP+ C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 753 GQSFAARSAFSLHLKKHAG 771
+ S ++HL+ H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 449 CHICGK--KLRGKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYC 506
C +CGK + KLK HM HTG +P+ C+ C L H+R H+ ERP+ C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 507 GHSFAARPAFNLHLKRHT 524
++ +HL+ HT
Sbjct: 71 PYASRNSSQLTVHLRSHT 88
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 667 HSCKVCGA--EIKGSLKEHMIVHTGERKYCCHIC--GKKMRGKLKEHMLTHTGERPYACE 722
H C+VCG K LK HM HTG + Y C C L +H+ H+ ERP+ C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 723 ICGGTFKTKWYLGVHMRKHNGE 744
IC + L VH+R H G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 1040 HICKVCGA--KIKGNLQQHMETHSGEKKICCHIC--GKKLRGRLNEHMLTHTGERPYACE 1095
H C+VCG K L+ HM H+G K C C LN+H+ H+ ERP+ C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 1096 FCGSSFKDKSYLRIHIRKHNGE 1117
C + ++ S L +H+R H G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 472 PFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERGDVRH 531
P CEVCG + K L HMR HTG +PY C C ++ A + N HL+ H+ D R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS---DERP 64
Query: 532 IECQ 535
+CQ
Sbjct: 65 FKCQ 68
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 1243 CTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLC 1302
C VC K S +LKTHM H + + C+ C L +H R+H+ +P+ C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 1303 SKQFTQKSTLNIHRKLHLN 1321
S L +H + H
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 385 GVLRADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKIC--GARVKSNLKAHMRIHT 442
G + +KC+ C K F + ++ H G K Y CK C A S+L H+RIH+
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 443 GERPVCCHICGKKLR--GKLKDHMLTHTGE 470
ERP C IC R +L H+ +HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 631 GELPPSKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVC--GAEIKGSLKEHMIVHT 688
G S KC +C K F R L+ H+ G K + CK C A SL +H+ +H+
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 689 GERKYCCHICGKKMR--GKLKEHMLTHTGE 716
ER + C IC R +L H+ +HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 718 PYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFKQTIE 777
P+ CE+CG F K L HMR H G +PY C C + A S+ + HL+ H+ ++ +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFK 66
Query: 778 CEYC 781
C+ C
Sbjct: 67 CQIC 70
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1213 ECNICLKTFNFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCE 1272
+C +C K F+ K K H++ H V Y C C + L H+ IH++ R F C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHT-GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 1273 VCGKGFIQKRYLEEHKRVHTG 1293
+C L H R HTG
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1004 GELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVC--GAKIKGNLQQHMETHS 1061
G S HKC C K F+ LK H+ G K + CK C A +L +H+ HS
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 1062 GEKKICCHICGKKLR--GRLNEHMLTHTGE 1089
E+ C IC R +L H+ +HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1091 PYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHA 1143
P+ CE CG F K L+ H+R H G +P+ C C + A S+ + HL+ H+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVE 75
+C C +S K +L H+ HTG+KPY C C + + L +HL+ H S E
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-------SDE 62
Query: 76 DMYQCDIC 83
++C IC
Sbjct: 63 RPFKCQIC 70
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 156 CEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHI 215
CEVCGK F+ ++K H + H G+K ++C C L H+ H+ E+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKP---YKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 216 CEICNRDFYSDAMLKRHLVKHS 237
C+IC + + L HL H+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHT 88
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 1825 QCDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVK 1884
+C+VCGK F+R LK+H+ + H + C C Y + L K
Sbjct: 10 KCEVCGKCFSRKDKLKTHM---------------RCHTGVKPYKCKTCDYAAADSSSLNK 54
Query: 1885 HKSRHIKDYNVFCKICQLGFLSKNELDVHNIKQH--DAQPHT 1924
H H + C+IC + ++L VH ++ H D+ P +
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVH-LRSHTGDSGPSS 95
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 1792 AQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKRE 1851
+ PH C VC K F K L H + H + K +C C + A + L H+
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGV-KPYKCKTCDYAAADSSSLNKHL-------- 56
Query: 1852 QRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKD 1892
+ H + F C +C Y S L H H D
Sbjct: 57 -------RIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 578 ECNICGALFATKYTLQDHMNTHTGNK-YKCDVCD 610
+C +CG F+ K L+ HM HTG K YKC CD
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 295 PHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTG 354
PH+C+ CGK F + L H R H GVK ++C C + + H+ H+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH-MRCHTGVKP-----YKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 355 IKNHVCSICQSTYTTARGLKRHNKNHLREAG 385
+ C IC + L H ++H ++G
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 31/83 (37%)
Query: 1591 TRGVFSCDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDAQP 1650
+ G C++C +RK L H H CK C + LN H D +P
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 1651 HTCPVCKKIFVNKFNLTTHKKLH 1673
C +C N LT H + H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 866 NTGPNQLLECHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRH 919
++G + +C CG + K L+ H+ H G+KPY C C+ SL +H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 811 CPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
C C K F ++ H++ H +K + C+ CD A L +H IH R
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERP---- 64
Query: 871 QLLECHYCGITKNNKTLLRDHISAHLG 897
+C C N + L H+ +H G
Sbjct: 65 --FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1680 HQCDTCGKSFTGNNHLKRHIYS-VHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQGL 1738
H+C+ CGK F+ + LK H+ +K + C+ C KH R H +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVK---PYKCKTCDYAAADSSSLNKHLRI-HSDERP 64
Query: 1739 FSCDLCSYTSTQKYYLVKHKSRHIKD 1764
F C +C Y S L H H D
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 1712 CRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKI 1771
C +C + F K++ K H R H + C C Y + L KH H + C+I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 1772 CQLGFLSKNELDVHNIKQH--DAQPHT 1796
C + ++L VH ++ H D+ P +
Sbjct: 70 CPYASRNSSQLTVH-LRSHTGDSGPSS 95
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 978 KCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGN 1037
KC+VCG ++ LK H H +G P +KC TC ++ +L KHL +H +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCH---TGVKP----YKCKTCDYAAADSSSLNKHL-RIHSD 61
Query: 1038 ----KCHICKVCGAKIKGNLQQHMETHSGE 1063
KC IC ++ L H+ +H+G+
Sbjct: 62 ERPFKCQICPY-ASRNSSQLTVHLRSHTGD 90
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 1296 PYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
P+ C++C K F++K L H + H +K + C C + ++ H+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 331 ECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRAD 390
+C CG F + + HM HTG+K + C C + L +H + H E
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE------- 62
Query: 391 EMYKCDKCDKLFIEQSEMVQHRDWVHGD 418
+KC C S++ H GD
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 840 CEECDKIFATREKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISAHLGIK 899
CE C K F+ ++KL+ H H G++ +C C + + L H+ H +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKP------YKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 900 PYCCIFCEEKYFSKKS 915
P+ C C Y S+ S
Sbjct: 64 PFKCQICP--YASRNS 77
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLS 73
+C C + S L HL H+ +P+ C IC + + L HL+ H +G S
Sbjct: 38 KCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 62/141 (43%), Gaps = 38/141 (26%)
Query: 640 KCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGSLKEHMIVHTGERKYCCHICG 699
+CP CHK F+ Y L+ VH K HTGE+ + C CG
Sbjct: 9 ECPTCHKKFLSKYYLK-----VHNRK---------------------HTGEKPFECPKCG 42
Query: 700 K-KMRGKLKEHMLTHTG-------ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSE 751
K R KE++L H E+ + C +C TF+ + L +HM H GE PY CS
Sbjct: 43 KCYFR---KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 752 CGQSFAARSAFSLHL-KKHAG 771
C Q F + H+ K H+G
Sbjct: 100 CSQQFMQKKDLQSHMIKLHSG 120
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 434 LKAHMRIHTGERPVCCHICGK-KLRGKLKDHMLTHTG-------ERPFGCEVCGSTYKYK 485
LK H R HTGE+P C CGK R K+++L H E+ F C VC T++ +
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFR---KENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Query: 486 YYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHL 520
L +HM HTGE PY C+ C F + H+
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGSH 1146
+G C C F K YL++H RKH GE+PF C +CG+ + + +L +H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE----NLLEHEARN 58
Query: 1147 ILRRHIGYTVF-CKECNIGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKY 1205
+ R VF C C F L H + G P+ C CS+ F K +L H+
Sbjct: 59 CMNR--SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Query: 1206 YHA 1208
H+
Sbjct: 117 LHS 119
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 1061 SGEKKICCHICGKKLRGR--LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH---N 1115
SG + C C KK + L H HTGE+P+ C CG + K L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 1116 GERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHG 1175
E+ FTCS C ++F R LH+ H G + C C+ F L SH
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK--------CSSCSQQFMQKKDLQSHM 114
Query: 1176 IKVHGLP 1182
IK+H P
Sbjct: 115 IKLHSGP 121
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 1013 KCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHME---THSGEKKIC 1067
+CPTC+K F + LK H G K C CG K NL +H + E+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 1068 CHICGKKLRGR--LNEHMLTHTGERPYACEFCGSSFKDKSYLRIH-IRKHNG 1116
C +C + R R L HM++HTGE PY C C F K L+ H I+ H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1623 VFCKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQ- 1681
V C C FLSK L VHN K +P CP C K + K NL H+ + MNR+ Q
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC-MNRSEQV 66
Query: 1682 --CDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDH 1733
C C ++F L+ H+ V + + C CSQ+F K+ + H K H
Sbjct: 67 FTCSVCQETFRRRMELRLHM--VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 1213 ECNICLKTFNFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNR---VF 1269
EC C K F K K H ++H + C C K L H + NR VF
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPF-ECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 1270 TCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHR-KLH 1319
TC VC + F ++ L H HTG PY C CS+QF QK L H KLH
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
+G C C F +K+YL VH RKH GE+P+ C +CG+ + + H ++ +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 774 --QTIECEYCHNTFTFETGLMGVVTRDEWEILLRDKVRICPKCNKEFYSDRTMRRHLKQV 831
Q C C TF L + E+ + C C+++F + ++ H+ ++
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK-----CSSCSQQFMQKKDLQSHMIKL 117
Query: 832 H 832
H
Sbjct: 118 H 118
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 811 CPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIRN--TG 868
CP C+K+F S ++ H ++ H K F C +C K + +E L H RN
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHE------ARNCMNR 62
Query: 869 PNQLLECHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAK 922
Q+ C C T + LR H+ +H G PY C C +++ KK L+ H K
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 1186 CEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQH--DDSVTYYPC 1243
C C K F SK L VH + + + FEC C K + K + H ++ + S + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 1244 TVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHK-RVHTG 1293
+VC + L+ HM+ H + C C + F+QK+ L+ H ++H+G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 269 CPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHS 328
CP C K + S +++H R+ H+ +P +C CGK + + +L++HE R + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE---Q 65
Query: 329 NFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRH 376
F C C F R + HM SHTG + CS C + + L+ H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 23/143 (16%)
Query: 179 GIKQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSR 238
G EC C K +LS+ L+ H HTGEK C C + ++ L H ++
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC- 59
Query: 239 MIKETSEEFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQC 298
+ R E +V TC +C++T++ +RLH+ H+ P++C
Sbjct: 60 --------------MNRSE-------QVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKC 97
Query: 299 KGCGKYFKSQRHLVQHERRVHLG 321
C + F ++ L H ++H G
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 126 KCPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKK 185
+CP C ++ S ++ H R H + C CGK + + + +H M + ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMN-RSEQV 66
Query: 186 FECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVK 235
F C+ C +T+ R+ L H+ +HTGE + C C++ F L+ H++K
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 46/147 (31%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERG 527
+G C C + KYYL VH RKHTGE+P+ C CG + +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK-------------- 48
Query: 528 DVRHIECQHSLKIIEYKIYQWISIENWFKIKRENVPSTKDQSHKKRDQKIECNICGALFA 587
EN + + N + +Q C++C F
Sbjct: 49 ------------------------ENLLEHEARNC-------MNRSEQVFTCSVCQETFR 77
Query: 588 TKYTLQDHMNTHTGN-KYKCDVCDNGY 613
+ L+ HM +HTG YKC C +
Sbjct: 78 RRMELRLHMVSHTGEMPYKCSSCSQQF 104
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 328 SNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVL 387
S EC C KF+S+ ++ H HTG K C C Y L H + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC----MN 61
Query: 388 RADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHM-RIHTG 443
R+++++ C C + F + E+ H G+ Y C C + K +L++HM ++H+G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 394 KCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGA--RVKSNLKAHMR---IHTGERPVC 448
+C C K F+ + + H G+K + C CG K NL H ++ E+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 449 CHICGKKLRGK--LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRK-HTG 497
C +C + R + L+ HM++HTGE P+ C C + K L HM K H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 1766 NVFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQ 1825
V C C FLSK L VHN K +P CP C K + K L H+ +NC
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE------ARNCM 60
Query: 1826 --------CDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTST 1877
C VC ++F R L+ H+ S H + + C CS
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVS---------------HTGEMPYKCSSCSQQFM 105
Query: 1878 QKYYLVKH 1885
QK L H
Sbjct: 106 QKKDLQSH 113
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 1597 CDLCSYTSTRKYYLVKHKSRHIKEYTVFCKKCQLGFLSKNELNVH---NIKQHDAQPHTC 1653
C C KYYL H +H E C KC + K L H N Q TC
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 1654 PVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHIYSVH 1703
VC++ F + L H H ++C +C + F L+ H+ +H
Sbjct: 70 SVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 1558 RNVTSDTKFPCRLCSQEFGTKKQRKKHERKD--HETRGVFSCDLCSYTSTRKYYLVKHKS 1615
R T + F C C + + K+ +HE ++ + + VF+C +C T R+ L H
Sbjct: 28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Query: 1616 RHIKEYTVFCKKCQLGFLSKNELNVHNIKQHDA 1648
H E C C F+ K +L H IK H
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 577 IECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYSSXXXXXXXXXXXXQENGELPP 635
+EC C F +KY L+ H HTG K ++C C Y E
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE--- 64
Query: 636 SKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMI-VHTG 689
++ C +C + F R LR H+ G + C C + K L+ HMI +H+G
Sbjct: 65 -QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 955 KCPKCEKEFSTPRYMRKHLRK-----KFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPS 1009
+CP C K+F + Y++ H RK F+C CG Y ++L H+ ++ E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE---- 64
Query: 1010 MIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHM-ETHSG 1062
+ C C + F L+ H+ G + C C + K +LQ HM + HSG
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 23/137 (16%)
Query: 14 NVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLS 73
VEC C ++ SK L H HTG KP+ C C Y + L H R+
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS--- 63
Query: 74 VEDMYQCDICSKMFIEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPICGDR 133
E ++ C +C + F + LH + E KC C +
Sbjct: 64 -EQVFTCSVCQETFRRRMEL-----RLHMVSHTGEM--------------PYKCSSCSQQ 103
Query: 134 YKSGTDMRRHYRDLHDS 150
+ D++ H LH
Sbjct: 104 FMQKKDLQSHMIKLHSG 120
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 52/165 (31%)
Query: 873 LECHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAKHNKVYNKAQY 932
+EC C +K L+ H H G KP+ C C + YF K++L HEA++ N+++
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--CMNRSE- 64
Query: 933 QDYQIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLRKKFKCDVCGNGYTSVKHL 992
+ F C VC + L
Sbjct: 65 ------------------------------------------QVFTCSVCQETFRRRMEL 82
Query: 993 KRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGN 1037
+ H + H +GE+P +KC +C + F + L+ H+ +H
Sbjct: 83 RLHMVSH---TGEMP----YKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 1825 QCDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVK 1884
+C C K F ++LK H + H + F C C +K L++
Sbjct: 9 ECPTCHKKFLSKYYLKVH---------------NRKHTGEKPFECPKCGKCYFRKENLLE 53
Query: 1885 HKSRHI--KDYNVF-CKICQLGFLSKNELDVHNIKQHDAQPHTC 1925
H++R+ + VF C +CQ F + EL +H + P+ C
Sbjct: 54 HEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 6 NKEKVRQLNVECHHCAMRYSSKSQLLDHLNS---HTGLKPYICHICKNSYVAAKGLKRHL 62
N++ + EC C Y K LL+H + + + C +C+ ++ L+ H+
Sbjct: 27 NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Query: 63 KRHMQATGQLSVEDMYQCDICSKMFIEHHAMVKHRDWLHA 102
H TG++ Y+C CS+ F++ + H LH+
Sbjct: 87 VSH---TGEMP----YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
+G C C K+F K L +H + H K F C CG ++ + H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 432 SNLKAHMRIHTGERPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYY 487
S+L+ H R HTGE+P C C ++ +LK H HTG +PF C+ C + +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 488 LAVHMRKHTGERPYVCNY--CGHSFA 511
L H R HTGE+P+ C + C FA
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 1087 TGERPYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFSLHLKKH 1142
+ +RP+ C + C + S+L++H RKH GE+P+ C +C + F+ S LK+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSR----SDQLKRH 57
Query: 1143 AGSHILRRHIGYTVF-CKECNIGFYSSTHLHSHGIKVHGLPPFICE--HCSKPFTSKGNL 1199
RRH G F CK C F S HL +H G PF C C K F L
Sbjct: 58 Q-----RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 1200 TVH 1202
H
Sbjct: 113 VRH 115
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 1051 GNLQQHMETHSGEKKICCHI--CGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSY 1106
+LQ H H+GEK C C ++ +L H HTG +P+ C+ C F +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 1107 LRIHIRKHNGERPFTC--SECGQSFAARSAFSLH 1138
L+ H R H GE+PF+C C + FA H
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 680 LKEHMIVHTGERKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLG 735
L+ H HTGE+ Y C C ++ +LK H HTG +P+ C+ C F +L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 736 VHMRKHNGERPYMC--SECGQSFAARSAFSLH 765
H R H GE+P+ C C + FA H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1079 LNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
L H HTGE+PY C+F C F L+ H R+H G +PF C C + F+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 1137 LHLKKHAG 1144
H + H G
Sbjct: 84 THTRTHTG 91
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 1256 LKTHMLIHANNRVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLN 1313
L+ H H + + C+ C + F + L+ H+R HTG KP+ C C ++F++ L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 1314 IHRKLHLNIKDFICDL--CGAKFYEFNTYVTH 1343
H + H K F C C KF + V H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 706 LKEHMLTHTGERPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFS 763
L+ H HTGE+PY C+ C F L H R+H G +P+ C C + F+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 764 LHLKKHAGFK 773
H + H G K
Sbjct: 84 THTRTHTGEK 93
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 1183 PFICEH--CSKPFTSKGNLTVHVKYYHAKTLFECNI--CLKTFNFKTSYKRHLKQHDDSV 1238
PF+C + C+K + +L +H + + + ++C+ C + F+ KRH ++H V
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GV 64
Query: 1239 TYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCE--VCGKGFIQKRYLEEHKRVH 1291
+ C C + S LKTH H + F+C C K F + L H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 442 TGERPVCCHICGKKLR----GKLKDHMLTHTGERPFGCEV--CGSTYKYKYYLAVHMRKH 495
+ +RP C G R L+ H HTGE+P+ C+ C + L H R+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
TG +P+ C C F+ H + HT
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 291 SKVRPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADH 348
S+ RP C GC K + HL H R+ H G K + +F+ C +F + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQ-CDFK--DCERRFSRSDQLKRH 57
Query: 349 MTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKC--DKCDKLFIEQS 406
HTG+K C CQ ++ + LK H + H ++ + C C K F
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT-------GEKPFSCRWPSCQKKFARSD 110
Query: 407 EMVQH 411
E+V+H
Sbjct: 111 ELVRH 115
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQ 79
C R+S QL H HTG+KP+ C C+ + + LK H + H TG E +
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH---TG----EKPFS 96
Query: 80 C--DICSKMFIEHHAMVKH 96
C C K F +V+H
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 812 PKCNKEFYSDRTMRRHLKQVHIEIKTFSCE--ECDKIFATREKLQRHWNYIHQGIRNTGP 869
P CNK ++ ++ H ++ H K + C+ +C++ F+ ++L+RH H G++
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKP--- 66
Query: 870 NQLLECHYCGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLKRHEAKH 923
+C C + L+ H H G KP+ C + C++K+ L RH H
Sbjct: 67 ---FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 363 CQSTYTTARGLKRHNKNHLREAGVLRADEMYKCD--KCDKLFIEQSEMVQHRDWVHGDKC 420
C Y L+ H++ H ++ Y+CD C++ F ++ +H+ G K
Sbjct: 14 CNKRYFKLSHLQMHSRKHT-------GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 421 YLCKICGARVKSN--LKAHMRIHTGERPVCC 449
+ CK C + + LK H R HTGE+P C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 128 PICGDRYKSGTDMRRHYRD-LHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKF 186
P C RY + ++ H R + +C + C +RF+ ++K+H++ H G+K F
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK---PF 67
Query: 187 ECAHCSKTYLSRVGLEDHINNHTGEKGHICEI--CNRDFYSDAMLKRH 232
+C C + + L+ H HTGEK C C + F L RH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C RY S L H HTG KPY C C+ + + LKRH +RH
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP------- 66
Query: 78 YQCDICSKMF 87
+QC C + F
Sbjct: 67 FQCKTCQRKF 76
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 982 CGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHI 1041
C Y + HL+ H KH +GE P K C + F+ + LK+H G K
Sbjct: 14 CNKRYFKLSHLQMHSRKH---TGEKPYQCDFK--DCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 1042 CKVCGAKI--KGNLQQHMETHSGEKKICC 1068
CK C K +L+ H TH+GEK C
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 1743 LCSYTSTQKYY-----LVKHKSRHI--KDYNVFCKICQLGFLSKNELDVHNIKQHDAQPH 1795
+C+Y K Y L H +H K Y K C+ F ++L H + +P
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 1796 TCPVCKKIFVNKVTLAAHKKIHL---PIDKNCQCDVCGKSFARTFHLKSH 1842
C C++ F L H + H P +C+ C K FAR+ L H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPF--SCRWPSCQKKFARSDELVRH 115
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 37/140 (26%)
Query: 899 KPYCCIF--CEEKYFSKKSLKRHEAKHNKVYNKAQYQ-DYQIQDLSMDQYRELVQSKERK 955
+P+ C + C ++YF L+ H KH + YQ D++
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHT---GEKPYQCDFK------------------- 42
Query: 956 CPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSM 1010
CE+ FS +++H R K F+C C ++ HLK H H +GE P S
Sbjct: 43 --DCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH---TGEKPFSC 97
Query: 1011 IHKCPTCYKIFTENHALKKH 1030
+ P+C K F + L +H
Sbjct: 98 --RWPSCQKKFARSDELVRH 115
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 1599 LCSYTSTRKYY-----LVKHKSRHIKEYTVFC--KKCQLGFLSKNELNVHNIKQHDAQPH 1651
+C+Y K Y L H +H E C K C+ F ++L H + +P
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 1652 TCPVCKKIFVNKFNLTTHKKLHLPMNRNHQC--DTCGKSFTGNNHLKRH 1698
C C++ F +L TH + H + C +C K F ++ L RH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHT-GEKPFSCRWPSCQKKFARSDELVRH 115
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 1647 DAQPHTC--PVCKKIFVNKFNLTTHKKLHLPMNRNHQCD--TCGKSFTGNNHLKRHIYSV 1702
+ +P C P C K + +L H + H + +QCD C + F+ ++ LKRH
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-GEKPYQCDFKDCERRFSRSDQLKRH---- 57
Query: 1703 HLKRDT---KFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYY-----L 1754
+R T F C+ C ++F + K H R H + FS C + S QK + L
Sbjct: 58 -QRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFS---CRWPSCQKKFARSDEL 112
Query: 1755 VKHKSRH 1761
V+H + H
Sbjct: 113 VRHHNMH 119
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFEC--AHCSKTYLSRVGLEDHINNHTGE 211
C C KR+ + ++ H + H G +K ++C C + + L+ H HTG
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRK-HTG---EKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 212 KGHICEICNRDFYSDAMLKRHLVKHS 237
K C+ C R F LK H H+
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 272 CKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKI 325
C++ + + ++ H R H+ V+P QCK C + F HL H R H G K
Sbjct: 44 CERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHT-RTHTGEKPF 95
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 15 VECHHCAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRH 61
+C C ++S L H +HTG KP+ C C+ + + L RH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1079 LNEHMLTHTGERPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
L H+ THTGE+PY C E C F L H RKH G +PF C C +SF+ +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 1137 LHLKKH 1142
LH+K+H
Sbjct: 93 LHMKRH 98
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 439 RIHTGERPVCCHICGKKLRGKLKDHMLTHTGERPFGC--EVCGSTYKYKYYLAVHMRKHT 496
RIH + P C + K LK H+ THTGE+P+ C E C + L H RKHT
Sbjct: 14 RIHYCDYPGCTKVYTKS--SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 497 GERPYVCNYCGHSFAARPAFNLHLKRH 523
G +P+ C C SF+ LH+KRH
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 706 LKEHMLTHTGERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFS 763
LK H+ THTGE+PY C E C F L H RKH G +P+ C C +SF+ +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 764 LHLKKH 769
LH+K+H
Sbjct: 93 LHMKRH 98
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 432 SNLKAHMRIHTGERPVCCHICGKKLR----GKLKDHMLTHTGERPFGCEVCGSTYKYKYY 487
S+LKAH+R HTGE+P C G R +L H HTG +PF C VC ++ +
Sbjct: 31 SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH 90
Query: 488 LAVHMRKH 495
LA+HM++H
Sbjct: 91 LALHMKRH 98
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTC--EVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
YP C+K + LK H+ H + + C E C F + L H R HTG KP+
Sbjct: 20 YP--GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 1299 CDLCSKQFTQKSTLNIHRKLHLN 1321
C +C++ F++ L +H K H N
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 680 LKEHMIVHTGERKYCCHICGKKMR----GKLKEHMLTHTGERPYACEICGGTFKTKWYLG 735
LK H+ HTGE+ Y C G R +L H HTG +P+ C +C +F +L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 736 VHMRKH 741
+HM++H
Sbjct: 93 LHMKRH 98
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 36/123 (29%)
Query: 1002 ESGELPPSM----IHKC--PTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIKGNLQQ 1055
SG P + IH C P C K++T++ LK HL
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL------------------------ 37
Query: 1056 HMETHSGEKKICCHICGKKLR----GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHI 1111
TH+GEK C G R L H HTG +P+ C C SF +L +H+
Sbjct: 38 --RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 1112 RKH 1114
++H
Sbjct: 96 KRH 98
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 1090 RPYACEFCGSS--FKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFSLHLKKHAGS 1145
R + C++ G + + S+L+ H+R H GE+P+ C+ C FA + H +KH G+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 1146 HILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
+ C CN F S HL H
Sbjct: 74 KPFQ--------CGVCNRSFSRSDHLALH 94
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQ 67
C R++ +L H HTG KP+ C +C S+ + L H+KRH
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 733 YLGVHMRKHNGERPYMCS--ECGQSFAARSAFSLHLKKHAGFKQTIECEYCHNTFT 786
+L H+R H GE+PY C+ C FA + H +KH G K +C C+ +F+
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK-PFQCGVCNRSFS 86
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYIC--HICKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C Y+ S L HL +HTG KPY C C + + L RH ++H A
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA-------KP 75
Query: 78 YQCDICSKMF 87
+QC +C++ F
Sbjct: 76 FQCGVCNRSF 85
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1588 DHETRGVFSCDL--CSYTSTRKYYLVKHKSRHIKE--YTVFCKKCQLGFLSKNELNVHNI 1643
D E R + CD C+ T+ +L H H E Y + C F +EL H
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 1644 KQHDAQPHTCPVCKKIFVNKFNLTTHKKLH 1673
K A+P C VC + F +L H K H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 1143 AGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVH-GLPPFIC--EHCSKPFTSKGNL 1199
+G + +R I Y + C + S+HL +H ++ H G P+ C E C F L
Sbjct: 6 SGPDLEKRRIHYCDY-PGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 1200 TVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDD 1236
T H + + F+C +C ++F+ H+K+H +
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1732 DHETQGLFSCDL--CSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELDVHNI 1787
D E + + CD C+ T+ +L H H K Y + C F +EL H
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 1788 KQHDAQPHTCPVCKKIFVNKVTLAAHKKIH 1817
K A+P C VC + F LA H K H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 277 QSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCG 336
+ G L R +H P GC K + HL H R H G K K +E C
Sbjct: 3 SGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAH-LRTHTGEKPYK-CTWEG--CD 54
Query: 337 AKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNH 380
+F + H HTG K C +C +++ + L H K H
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 1674 LPMNRNHQCD--TCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERK 1731
L R H CD C K +T ++HLK H+ + ++ K C F ++ +H RK
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 1732 DHETQGLFSCDLCSYTSTQKYYLVKHKSRH 1761
H F C +C+ + ++ +L H RH
Sbjct: 70 -HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 866 NTGPN----QLLECHYCGITK--NNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLK 917
++GP+ ++ C Y G TK + L+ H+ H G KPY C + C+ ++ L
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 918 RHEAKHNKV 926
RH KH
Sbjct: 65 RHYRKHTGA 73
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 131 GDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECA- 189
G SG D+ + R +H C C K + +K H + H G +K ++C
Sbjct: 1 GSSGSSGPDLEK--RRIH----YCDYPGCTKVYTKSSHLKAHLRT-HTG---EKPYKCTW 50
Query: 190 -HCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKH 236
C + L H HTG K C +CNR F L H+ +H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 1189 CSKPFTSKGNLTVHVKYYHAKTLFECNI--CLKTFNFKTSYKRHLKQHDDSVTYYPCTVC 1246
C+K +T +L H++ + + ++C C F RH ++H + + C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF-QCGVC 81
Query: 1247 SKNLSSPYRLKTHMLIHAN 1265
+++ S L HM H N
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 1772 CQLGFLSKNELDVHNIKQHDAQPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVC 1829
C + + L H +P+ C C F L H + H K QC VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA-KPFQCGVC 81
Query: 1830 GKSFARTFHLKSHISSVHLKREQ 1852
+SF+R+ HL ++H+KR Q
Sbjct: 82 NRSFSRSDHL-----ALHMKRHQ 99
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERGDVR 530
+PF C +C + +L H+R HTGE+P+ C+ CG FA R ER R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA----------RSDERK--R 49
Query: 531 HIECQHSLKIIEYKIYQWIS 550
H + QH L I+E K+ + +S
Sbjct: 50 HRDIQHILPILEDKVEELLS 69
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKL 1318
F C +C + F + +L H R HTG KP+ACD+C ++F + HR +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFA 1130
+P+ C C +F +L HIR H GE+PF C CG+ FA
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 717 RPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFA 757
+P+ C IC F +L H+R H GE+P+ C CG+ FA
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHVHETHAILPRV 1354
KP+ C +C + F++ L H + H K F CD+CG KF + H H ILP
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP-- 58
Query: 1355 IVTKFKVEDF 1364
+ + KVE+
Sbjct: 59 -ILEDKVEEL 67
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 184 KKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRH 232
K F+C C + + L HI HTGEK C+IC R F KRH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 445 RPVCCHICGKKLRGK--LKDHMLTHTGERPFGCEVCGSTY 482
+P C IC + L H+ THTGE+PF C++CG +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRH 61
+C C +S L H+ +HTG KP+ C IC + + KRH
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 691 RKYCCHICGKKMRGK--LKEHMLTHTGERPYACEICGGTF 728
+ + C IC + L H+ THTGE+P+AC+ICG F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRV 1290
+ C +C +N S L TH+ H + F C++CG+ F + + H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 419 KCYLCKICGARVKSN--LKAHMRIHTGERPVCCHICGKKL 456
K + C+IC + L H+R HTGE+P C ICG+K
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 1064 KKICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSF 1101
K C IC + L H+ THTGE+P+AC+ CG F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 1181 LPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRH 1230
+ PF C C + F+ +LT H++ + + F C+IC + F KRH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 40 LKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQCDICSKMFIEHHAMVKHRDW 99
+KP+ C IC ++ + L H++ H TG E + CDIC + F +HRD
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH---TG----EKPFACDICGRKFARSDERKRHRDI 53
Query: 100 LHAIHFRSEK 109
H + +K
Sbjct: 54 QHILPILEDK 63
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRH 376
F+C C F H+ H+ +HTG K C IC + + KRH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRH 1698
+P C +C + F +LTTH + H + CD CG+ F ++ KRH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGRKFARSDERKRH 50
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHL 1848
+P C +C + F L H + H +K CD+CG+ FAR+ K H H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1042 CKVCGAKIK--GNLQQHMETHSGEKKICCHICGKKL 1075
C++C +L H+ TH+GEK C ICG+K
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 665 KYHSCKVCGAEIKGS--LKEHMIVHTGERKYCCHICGKKM 702
K C++C S L H+ HTGE+ + C ICG+K
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 1681 QCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKH 1728
QC C ++F+ ++HL HI + H + F C +C ++F ++RK+H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 50
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 578 ECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGYS 614
+C IC F+ L H+ THTG K + CD+C ++
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 955 KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHK-IKHM 1000
+C C + FS ++ H+R K F CD+CG + KRH+ I+H+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGERP 446
D+ YKCD+C F + + H+ G+K Y C ICGA+ +NLK H RIH+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 690 ERKYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
++ Y C C R G L H HTGE+PY C ICG F L H R H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
++P+ C+ C ++++YK LA H HTGE+PY CN CG F RPA +LK HT
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-NRPA---NLKTHT 65
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 1074 KLRGRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+ +G L H HTGE+PY C CG+ F + L+ H R H+GE+P
Sbjct: 28 RYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 418 DKCYLCKICGA--RVKSNLKAHMRIHTGERPVCCHICGKKLR--GKLKDHMLTHTGERP 472
DK Y C C A R K NL +H +HTGE+P C+ICG + LK H H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLH 1319
++ + C+ C F K L HK VHTG KPY C++C QF + + L H ++H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
++P C C R G L H HTGE+P+ C +CG+ + L H R H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
++PY C+ C +F+ K L H H GE+PY C+ CG F + H + H+G K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
++PY C+ C +SF+ K L H H GE+P+ C+ CG F + H + H+G
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 664 NKYHSCKVCGAEI--KGSLKEHMIVHTGERKYCCHICGKKMR--GKLKEHMLTHTGERP 718
+K + C C A KG+L H VHTGE+ Y C+ICG + LK H H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
KPY CD C F K L H+ +H K + C++CGA+F TH
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
Y C C + L +H +H + + C +CG F + L+ H R+H+G KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 1037 NKCHICKVCGA--KIKGNLQQHMETHSGEKKICCHICGKKLR--GRLNEHMLTHTGERP 1091
+K + C C A + KGNL H H+GEK C+ICG + L H H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 1183 PFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQH 1234
P+ C+ C F KGNL H + + + CNIC FN + K H + H
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHI 1843
+P+ C C+ F K LA+HK +H +K +C++CG F R +LK+H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKTHT 65
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLRE 383
++C C A F + ++A H T HTG K + C+IC + + LK H + H E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 184 KKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHS 237
K ++C C ++ + L H HTGEK + C IC F A LK H HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRH 65
+C C + K L H HTG KPY C+IC + LK H + H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 1625 CKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLH 1673
C +CQ F K L H +P+ C +C F NL TH ++H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1012 HKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKI--KGNLQQHMETHSGEK 1064
+KC C F L H G K + C +CGA+ NL+ H HSGEK
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHI 1699
+P+ C C+ F K NL +HK +H + ++C+ CG F +LK H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKTHT 65
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 637 KIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEI--KGSLKEHMIVHTGER 691
K KC C F L H G K + C +CGA+ +LK H +H+GE+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 574 DQKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVC 609
D+ +C+ C A F K L H HTG K Y+C++C
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 1235 DDSVTYYPCTVCSKNLSSPYRLKTHMLIH------ANNRVFTCEVC---GKGFIQKRYLE 1285
D++ P C + S+ + L TH+ + NN V E C GK F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 1286 EHKRVHTGYKPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDL--CGAKFYEFNTYV 1341
H RVHTG KP+ C C K F + L IH++ H K F C+ C +F +
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRK 139
Query: 1342 THVH 1345
H+H
Sbjct: 140 KHMH 143
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 1233 QHDDSVTYYP-CTVCSKNLSSPYRLKTHMLIHANNRVFTCEV--CGKGFIQKRYLEEHKR 1289
+ ++ V Y+ C K+ + Y+L H+ +H + F C CGK F + L+ HKR
Sbjct: 54 EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Query: 1290 VHTGYKPYACDL--CSKQFTQKSTLNIHRKLHLNIK 1323
HTG KP+ C+ C ++F S H +H + K
Sbjct: 114 THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 455 KLRGKLKDHMLTHTGERPFGCEV--CGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSF 510
K + KL +H+ HTGE+PF C CG + L +H R HTGE+P+ C + C F
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 511 AARPAFNLHLKRHT 524
A H+ HT
Sbjct: 133 ANSSDRKKHMHVHT 146
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 475 CEVCGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSFAARPAFNLHLKRHT 524
C G ++K KY L H+R HTGE+P+ C + CG FA +H + HT
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1094 CEFCGSSFKDKSYLRIHIRKHNGERPFTC--SECGQSFAARSAFSLHLKKHAG 1144
C G SFK K L HIR H GE+PF C CG+ FA +H + H G
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 721 CEICGGTFKTKWYLGVHMRKHNGERPYMC--SECGQSFAARSAFSLHLKKHAGFKQTIEC 778
C G +FK K+ L H+R H GE+P+ C CG+ FA +H + H G ++ +C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG-EKPFKC 123
Query: 779 EY 780
E+
Sbjct: 124 EF 125
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 1016 TCYKIFTENHALKKHLDWVH-GNKCHICKVC----------GAKIKGNLQQHMETHSGEK 1064
+C + F+ H L H+ H G VC K K L H+ H+GEK
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 1065 KICCHICG-KKLRGR---LNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNGER 1118
C G K+ R L H THTGE+P+ CEF C F + S + H+ H ++
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 680 LKEHMIVHTGERKYCCHI--CGK--KMRGKLKEHMLTHTGERPYACEICG 725
L H+ VHTGE+ + C CGK LK H THTGE+P+ CE G
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 299 KGCGKYFKSQRHLVQHERRVHLG-VKKIKHSNF--ECFHCGAKFISRTHIADHMTSHTGI 355
K C + F + LV H H+G ++ H + EC G F ++ + +H+ HTG
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 356 KNHVCSI--CQSTYTTARGLKRHNKNHLREAGVLRADEMYKC--DKCDKLFIEQSEMVQH 411
K C C + + LK H + H E + +KC + CD+ F S+ +H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGE-------KPFKCEFEGCDRRFANSSDRKKH 141
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 843 CDKIFATREKLQRHWNYIHQGIRNTGPNQ------LLECHYCGITKNNKTLLRDHISAHL 896
CD+ F+T +L H H G GP Q EC G + K L +HI H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVG----GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 897 GIKPYCCIF--CEEKYFSKKSLKRHEAKH 923
G KP+ C F C + + ++LK H+ H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 394 KCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICG-----ARVKSNLKAHMRIHTGERPVC 448
+C + K F + ++V H G+K + C G AR + NLK H R HTGE+P
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE-NLKIHKRTHTGEKPFK 122
Query: 449 CHICGKKLR----GKLKDHMLTHTGER 471
C G R K HM HT ++
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 153 KCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECA--HCSKTYLSRVGLEDHINNHTG 210
+CP E GK F + ++ H +V H G +K F C C K + L+ H HTG
Sbjct: 64 ECPRE--GKSFKAKYKLVNHIRV-HTG---EKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 211 EKGHICEI--CNRDFYSDAMLKRHLVKHS 237
EK CE C+R F + + K+H+ H+
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 1125 CGQSFAARSAFSLHLK-KHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVH-GLP 1182
C ++F+ H+ +H G H+ Y C F + L +H I+VH G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEK 89
Query: 1183 PFICE--HCSKPFTSKGNLTVHVKYYHAKTLFECNI--CLKTFNFKTSYKRHLKQH 1234
PF C C K F NL +H + + + F+C C + F + K+H+ H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 155 PCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKF-----ECAHCSKTYLSRVGLEDHINNHT 209
P + C + F+++ + H + H+G ++ EC K++ ++ L +HI HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 210 GEKGHICEI--CNRDFYSDAMLKRHLVKHS 237
GEK C C + F LK H H+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQATGQLS 73
EC + +K +L++H+ HTG KP+ C C + ++ LK H + H TG
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH---TG--- 117
Query: 74 VEDMYQCDI--CSKMFIEHHAMVKH 96
E ++C+ C + F KH
Sbjct: 118 -EKPFKCEFEGCDRRFANSSDRKKH 141
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 396 DKCDKLFIEQSEMVQH--RDWVHGD-KCYLCKICGA-------RVKSNLKAHMRIHTGER 445
D C + F Q ++V H + +HG+ K ++C G + + L HMR HTGE+
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 446 PVCCHICG-----KKLRGKLKDHMLTHTGERPFGCE--VCGSTYKYKYYLAVHM-RKHTG 497
P C G +L LK H+ +HTGE+P+ CE C + A H R H+
Sbjct: 67 PHKCTFEGCRKSYSRLEN-LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 498 ERPYVCNYCG 507
E+PYVC G
Sbjct: 126 EKPYVCKLPG 135
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 728 FKTKWYLGVHMRKHNGERPYMCS--ECGQSFAARSAFSLHLKKHAGFKQTI-ECEYCHNT 784
FK ++ L VHMR+H GE+P+ C+ C +S++ HL+ H G K + E E C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 785 FTFETGLMGVVTRDEWEILLRDKVRIC--PKCNKEFYSDRTMRRHLKQVH 832
F+ + R +K +C P C K + ++R+H+K VH
Sbjct: 109 FSNASDRAKHQNRTH----SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 1246 CSKNL---SSPYRLKTHMLIHANNRVFTC--EVCGKGFIQKRYLEEHKRVHTGYKPYAC- 1299
CS+ L + Y L HM H + C E C K + + L+ H R HTG KPY C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 1300 -DLCSKQFTQKSTLNIHR-KLHLNIKDFICDL--CGAKFYEFNTYVTHVHETHA 1349
+ CSK F+ S H+ + H N K ++C L C ++ + ++ HV H
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 300 GCGKYFKSQRHLVQHERRVHL-GVKKIKHSNFECFHCG-----AKFISRTHIADHMTSHT 353
GC + F SQ LV H H+ G +K F C G F ++ + HM HT
Sbjct: 8 GCSQEFDSQEQLVHHINSEHIHGERK----EFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 354 GIKNHVCSI--CQSTYTTARGLKRHNKNHLREAGVLRADEMYKC--DKCDKLFIEQSEMV 409
G K H C+ C+ +Y+ LK H ++H ++ Y C + C K F S+
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHT-------GEKPYMCEHEGCSKAFSNASDRA 116
Query: 410 QHRDWVHG-DKCYLCKICGARVKSNLKAHMRIHT 442
+H++ H +K Y+CK+ G + + +R H
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 1060 HSGEKKICCHI--CGKKLRG-----RLNEHMLTHTGERPYACEF--CGSSFKDKSYLRIH 1110
H K+ CH C ++LR L HM HTGE+P+ C F C S+ L+ H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 1111 IRKHNGERPFTCSE--CGQSFAARSAFSLH 1138
+R H GE+P+ C C ++F+ S + H
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 450 HICGKKLRGKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNY--CG 507
HI + + G+ K+ + H G GC +K +Y L VHMR+HTGE+P+ C + C
Sbjct: 22 HINSEHIHGERKE-FVCHWG----GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCR 76
Query: 508 HSFAARPAFNLHLKRHT 524
S++ HL+ HT
Sbjct: 77 KSYSRLENLKTHLRSHT 93
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 395 CDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVK----SNLKAHMRIHTGERPVCCH 450
C + + F Q +V H G+K + C G R NLK H+R HTGE+P C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 451 --ICGKKLRG---KLKDHMLTHTGERPFGCEVCGSTYKY 484
C K + K TH+ E+P+ C++ G T +Y
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY 140
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 24 YSSKSQLLDHLNSHTGLKPYICHI--CKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQC- 80
+ ++ L+ H+ HTG KP+ C C+ SY + LK HL+ H TG E Y C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH---TG----EKPYMCE 101
Query: 81 -DICSKMFIEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPICGDRYKSGTD 139
+ CSK F KH++ H+ +EK K P C RY +
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHS----NEKPYVC------------KLPGCTKRYTDPSS 145
Query: 140 MRRHYRDLH 148
+R+H + +H
Sbjct: 146 LRKHVKTVH 154
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 646 KIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKGS----LKEHMIVHTGERKYCCHICG-- 699
+ F YML H+ G K H C G S LK H+ HTGE+ Y C G
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 700 ---KKMRGKLKEHMLTHTGERPYACEICGGT 727
+ K TH+ E+PY C++ G T
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCT 137
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 1014 CPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAKIK----GNLQQHMETHSGEKKICC- 1068
C + F + L H+ G K H C G + NL+ H+ +H+GEK C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 1069 -HICGKKLRG---RLNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNG 1116
C K R TH+ E+PY C+ C + D S LR H++ +G
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFEC--AHCSK---TYLSRVGLEDHINNH 208
C + C + F+S +++ H H+ ++K+F C CS+ + ++ L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 209 TGEKGHIC--EICNRDFYSDAMLKRHLVKHSRMIKETSEEFVETGSITREEWYKMVLQRV 266
TGEK H C E C + + LK HL H T E+ Y +
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSH-----------------TGEKPYMCEHEG- 104
Query: 267 KTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCK--GCGKYFKSQRHLVQHERRVH 319
C K + +A H HS +P+ CK GC K + L +H + VH
Sbjct: 105 -----CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYIC--HICKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C YS L HL SHTG KPY+C C ++ A +H R S E
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR------THSNEKP 128
Query: 78 YQCDI--CSKMFIEHHAMVKHRDWLHA 102
Y C + C+K + + ++ KH +H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 1715 CSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQK--------YYLVKHKSRHIKDYN 1766
CSQEFD++EQ H +H G +C + + Y LV H RH +
Sbjct: 9 CSQEFDSQEQLVHHINSEH-IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 1767 VFCKI--CQLGFLSKNELDVHNIKQHDAQPHTC--PVCKKIFVNKVTLAAHKKIHLPIDK 1822
C C+ + L H +P+ C C K F N A H+ +K
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 1823 N--CQCDVCGKSFARTFHLKSHISSVH 1847
C+ C K + L+ H+ +VH
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 13/146 (8%)
Query: 1571 CSQEFGTKKQRKKHERKDH--ETRGVFSCDLCSYTST-----RKYYLVKHKSRHIKEYTV 1623
CSQEF +++Q H +H R F C + +Y LV H RH E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 1624 FC--KKCQLGFLSKNELNVHNIKQHDAQPHTCP--VCKKIFVNKFNLTTHKKLHLPMNRN 1679
C + C+ + L H +P+ C C K F N + H+ +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 1680 HQC--DTCGKSFTGNNHLKRHIYSVH 1703
+ C C K +T + L++H+ +VH
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 219 CNRDFYSDAMLKRHLVKHSRMIKETSEEFV-ETGSITRE-----EWYKMVLQRVK----- 267
C+++F S L H+ +S I +EFV G +RE Y +V+ +
Sbjct: 9 CSQEFDSQEQLVHHI--NSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 268 ----TCPLCKKTYQSAKGMRLHIREVHSKVRPHQCK--GCGKYFKSQRHLVQHERRVHLG 321
T C+K+Y + ++ H+R H+ +P+ C+ GC K F + +H+ R H
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 322 VK 323
K
Sbjct: 126 EK 127
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 931 QYQDYQIQDLSMDQYRELVQSKERKCP--KCEKEFSTPRYMRKHLR-----KKFKCD--V 981
+ + ++ Q + + R K KC C K +S ++ HLR K + C+
Sbjct: 45 ELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG 104
Query: 982 CGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHG 1036
C +++ +H+ + S E P + K P C K +T+ +L+KH+ VHG
Sbjct: 105 CSKAFSNASDRAKHQNR--THSNEKP--YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 191 CSKTYLSRVGLEDHINNHTGEKGHIC--EICNRDFYSDAMLKRHLVKHSRMIKETSEEFV 248
C K+Y L+ H+ +HTGEK ++C E C++ F + + +H
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH---------------- 118
Query: 249 ETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHS 291
+ + + E+ Y L P C K Y +R H++ VH
Sbjct: 119 QNRTHSNEKPYVCKL------PGCTKRYTDPSSLRKHVKTVHG 155
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSE--CGQSFAARSAFSLHLKKHAGSHI 1147
Y C F CG+++ L+ H+ KH GE+PF C E C + F + HL +H+ +H
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH----HLTRHSLTHT 68
Query: 1148 LRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLP--PFIC--EHCSKPFTSKGNLTVHV 1203
+ +T C++ F + ++ H + H + ++C E+C K F L VH
Sbjct: 69 GEK--NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 1204 KYYHAKTLFEC--NICLKTFNFKTSYKRHLKQHDDSVTYYPC 1243
+ + +EC C K F+ + KRH K H YPC
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPC 164
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 644 CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKG-----SLKEHMIVHTGERKYCCHIC 698
C + +N+ L+ HL G K CK G E KG L H + HTGE+ + C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 699 GKKMRGKLKEHMLTHTGER------PYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCS 750
G +R K +M H Y C E CG FK L VH H + PY C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 751 E--CGQSFAARSAFSLHLKKHAGF--KQTIECEYCHNTFTF 787
C + F+ S H K HAG+ K+ C + T+T
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 179
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 78/199 (39%), Gaps = 39/199 (19%)
Query: 1160 ECNIGFYSSTHLHSHGIKVHGLPPFIC--EHCSKPFTSKGNLTVHVKYYHAKTLFECNI- 1216
+C + + L +H K G PF C E C K FTS +LT H + + F C+
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 1217 -CLKTFNFKTSYKRHLKQ-HDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVC 1274
C F K + K+H + H+ + Y C E C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHF--------------------------ENC 112
Query: 1275 GKGFIQKRYLEEHKRVHTGYKPYAC--DLCSKQFTQKSTLNIHRKLHLNI---KDFICDL 1329
GK F + L+ H+ HT PY C + C K+F+ S L H K+H KD C
Sbjct: 113 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSF 172
Query: 1330 CGAKFYEFNTYVTHVHETH 1348
G + Y+ HV E H
Sbjct: 173 VGK---TWTLYLKHVAECH 188
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 72/188 (38%), Gaps = 42/188 (22%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYIC--HICKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C Y+ +L HL HTG KP+ C C+ + + L RH H TG E
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH---TG----EKN 72
Query: 78 YQCDI--CSKMFIEHHAMVKHRDWLHAI-------HFRSEKNLTSEEWRQLVIKNARKCP 128
+ CD C F M KH + H I HF +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN--------------------- 111
Query: 129 ICGDRYKSGTDMRRH-YRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFE 187
CG +K ++ H + +CP E C KRF+ R+K+H K VH G KK
Sbjct: 112 -CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDS 169
Query: 188 CAHCSKTY 195
C+ KT+
Sbjct: 170 CSFVGKTW 177
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 1246 CSKNLSSPYRLKTHMLIHANNRVFTC--EVCGKGFIQKRYLEEHKRVHTGYKPYACDL-- 1301
C + ++L+ H+ H + F C E C KGF +L H HTG K + CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 1302 CSKQFTQKSTLNIHRKLHLNIK--DFICDL--CGAKFYEFNTYVTHVHETHAILP 1352
C +FT K+ + H NIK ++C CG F + N H LP
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 719 YACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSE--CGQSFAARSAFSLHLKKHAGFKQ 774
Y C CG + W L H+ KH GE+P+ C E C + F + + H H G K
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 775 -TIECEYCHNTFTFETGLMGVVTRDEWEILLRDKVRIC------PKCNKEFYSDRTMRRH 827
T + + C FT + + R ++IC C K F ++ H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFH-------NIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 828 LKQVHIEIKTFSC--EECDKIFATREKLQRHWNYIHQG 863
+ H + + C E CDK F+ +L+RH +H G
Sbjct: 126 -QFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAG 161
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 1017 CYKIFTENHALKKHLDWVHGNKCHICKVCGAKIKG-----NLQQHMETHSGEKKICCHIC 1071
C + +N L+ HL G K CK G + KG +L +H TH+GEK C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 1072 GKKLRGRLNEHMLTHTGER------PYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCS 1123
G LR +M H Y C F CG +FK + L++H H + P+ C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 1124 E--CGQSFAARSAFSLHLKKHAG 1144
C + F+ S H K HAG
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAG 161
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 335 CGAKFISRTHIADHMTSHTGIKNHVC--SICQSTYTTARGLKRHNKNHLREAGVLRADEM 392
CGA + + H+ HTG K C C+ +T+ L RH+ H E
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN------- 72
Query: 393 YKCDK--CDKLFIEQSEMVQHRDWVHGDK--CYLCKI--CGARVK--SNLKAHMRIHTGE 444
+ CD CD F ++ M +H + H K Y+C CG K + LK H HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 445 RPVCC--HICGKK--LRGKLKDHMLTHTG---ERPFGCEVCGSTY 482
P C C K+ L +LK H H G ++ C G T+
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 53/148 (35%), Gaps = 44/148 (29%)
Query: 421 YLCKI--CGARVKSN--LKAHMRIHTGERPVCC--HICGKKLRG--KLKDHMLTHTGERP 472
Y+C CGA N L+AH+ HTGE+P C C K L H LTHTGE+
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 473 FGC----------------------------------EVCGSTYKYKYYLAVHMRKHTGE 498
F C E CG +K L VH HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 499 RPYVCNY--CGHSFAARPAFNLHLKRHT 524
PY C + C F+ H K H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 1685 CGKSFTGNNHLKRHIYSVHLKRDTKFPCRL--CSQEFDTKEQRKKHERKDHETQGLFSCD 1742
CG ++ N L+ H+ + FPC+ C + F + +H H + F+CD
Sbjct: 20 CGAAYNKNWKLQAHL--CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCD 76
Query: 1743 L--CSYTSTQKYYLVKHKSR--HIKDYNVFCKI--CQLGFLSKNELDVHNIKQHDAQPHT 1796
C T K + KH +R +IK C C F N+L VH P+
Sbjct: 77 SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 1797 CP--VCKKIFVNKVTLAAHKKIHL--PIDKNCQCDVCGKSFARTFHLKSHISSVH 1847
CP C K F L H+K+H P K+ C GK++ T +LK H++ H
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLK-HVAECH 188
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 1600 CSYTSTRKYYLVKHKSRHIKEYTVFCKK--CQLGFLSKNELNVHNIKQHDAQPHTCPV-- 1655
C + + L H +H E CK+ C+ GF S + L H++ + TC
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 1656 CKKIFVNKFNLTTHKKLHLPMNRNHQC---------DTCGKSFTGNNHLKRHIYSVHLKR 1706
C F K N+ H NR H + CGK+F +N LK H +S +
Sbjct: 80 CDLRFTTKANMKKH------FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 1707 DTKFPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKH 1757
+ P C + F + K+HE K H D CS+ +KH
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 40/168 (23%)
Query: 974 RKKFKC--DVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHL 1031
K F C + C G+TS+ HL RH + H E S C FT +KKH
Sbjct: 40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS-----DGCDLRFTTKANMKKHF 94
Query: 1032 DWVHGNKCHICKVCGAKIKGNLQQHMETHSGEKKICCHI--CGKKLR--GRLNEHMLTHT 1087
N+ H K+C CH CGK + +L H +HT
Sbjct: 95 -----NRFHNIKIC-------------------VYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 1088 GERPYAC--EFCGSSFKDKSYLRIHIRKHNG---ERPFTCSECGQSFA 1130
+ PY C E C F S L+ H + H G ++ +CS G+++
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 189 AHCSKTYLSRVGLEDHINNHTGEKGHIC--EICNRDFYSDAMLKRHLVKHSRMIKETSEE 246
A C Y L+ H+ HTGEK C E C + F S L RH + H+ T +
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 247 FVETGSITREEWYKMVLQR---VKTCPL------CKKTYQSAKGMRLHIREVHSKVRPHQ 297
T + K R +K C C K ++ +++H + H++ P++
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYE 136
Query: 298 C--KGCGKYFKSQRHLVQHERRVHLG 321
C +GC K F L +HE +VH G
Sbjct: 137 CPHEGCDKRFSLPSRLKRHE-KVHAG 161
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 19/156 (12%)
Query: 356 KNHVCSI--CQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRD 413
K ++CS C + Y L+ H H E +E C+K F + +H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEE-----GCEKGFTSLHHLTRHSL 65
Query: 414 WVHGDKCYLCKICGARVKSNLKAHMRIHTGER---PVCCHI-----CGKKLR--GKLKDH 463
G+K + C G ++ KA+M+ H +C ++ CGK + +LK H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 464 MLTHTGERPFGC--EVCGSTYKYKYYLAVHMRKHTG 497
+HT + P+ C E C + L H + H G
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 814 CNKEFYSDRTMRRHLKQVHIEIKTFSCEE--CDKIFATREKLQRHWNYIHQGIRNTGPNQ 871
C K F S + RH H K F+C+ CD F T+ +++H+N H I+
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN-IKIC---- 103
Query: 872 LLECHY--CGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLKRHEAKH 923
+ CH+ CG L+ H +H PY C C++++ LKRHE H
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 43/166 (25%)
Query: 878 CGITKNNKTLLRDHISAHLGIKPYCCI--FCEEKYFSKKSLKRHEAKHNKVYNKAQYQDY 935
CG N L+ H+ H G KP+ C CE+ + S L RH H N D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD- 78
Query: 936 QIQDLSMDQYRELVQSKERKCPKCEKEFSTPRYMRKHLRKKFKCDV---------CGNGY 986
C+ F+T M+KH + + CG +
Sbjct: 79 ----------------------GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Query: 987 TSVKHLKRHKIKHMKESGELPPSMIHKCP--TCYKIFTENHALKKH 1030
LK H+ H + +LP ++CP C K F+ LK+H
Sbjct: 117 KKHNQLKVHQFSHTQ---QLP----YECPHEGCDKRFSLPSRLKRH 155
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of
Zinc Finger Protein 435
Length = 77
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
R + C+ CGK F L +H+R HTG KPY CD C K F Q+S L H ++H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
R Y C+ CG SF S L H R H GE+P+ C ECG++F RS H + H GS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
Y C C K+ S L H H + + C+ CGK FIQ+ +L H RVHTG P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 717 RPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHAG 771
R Y C+ CG +F L H R H GE+PY C ECG++F RS H + H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHTERG 527
R + C+ CG ++ + L+ H R HTGE+PY C+ CG +F R H + HT G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 691 RKYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
R+Y C CGK L +H THTGE+PY C+ CG F + +L H R H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 388 RADEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARV--KSNLKAHMRIHTGER 445
R YKCD+C K F S++ +HR G+K Y C CG +S+L H R+HTG
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 446 P 446
P
Sbjct: 74 P 74
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 1068 CHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFT 1121
C CGK L++H THTGE+PY C+ CG +F +S+L H R H G P +
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 449 CHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
C CGK L H THTGE+P+ C+ CG + + +L H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 1297 YACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
Y CD C K F+ S L+ HR+ H K + CD CG F + + + H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHT 353
R ++C CGK F L +H RR H G K ++C CG FI R+H+ H HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKP-----YKCDECGKAFIQRSHLIGHHRVHT 70
Query: 354 G 354
G
Sbjct: 71 G 71
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 421 YLCKICGARVK--SNLKAHMRIHTGERPVCCHICGKKL--RGKLKDHMLTHTGERP 472
Y C CG S+L H R HTGE+P C CGK R L H HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 257 EWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHER 316
EW + +R K C C K++ + + H R H+ +P++C CGK F + HL+ H
Sbjct: 10 EWQQRERRRYK-CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHH- 66
Query: 317 RVHLG 321
RVH G
Sbjct: 67 RVHTG 71
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 181 KQKKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRM 239
+++++++C C K++ L H HTGEK + C+ C + F + + HL+ H R+
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF----IQRSHLIGHHRV 68
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 745 RPYMCSECGQSFAARSAFSLHLKKHAGFKQTIECEYCHNTFTFETGLMG 793
R Y C ECG+SF+ S S H + H G K +C+ C F + L+G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQRSHLIG 64
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1788 KQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSH 1842
+Q + + + C C K F + L+ H++ H +K +CD CGK+F + HL H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG-EKPYKCDECGKAFIQRSHLIGH 65
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1644 KQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRH 1698
+Q + + + C C K F + +L+ H++ H + ++CD CGK+F +HL H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHT-GEKPYKCDECGKAFIQRSHLIGH 65
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 575 QKIECNICGALFATKYTLQDHMNTHTGNK-YKCDVCDNGY 613
++ +C+ CG F+ L H THTG K YKCD C +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQA 68
C C +S S L H +HTG KPY C C +++ L H + H +
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 152 RKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHTG 210
R+ C+ CGK F+ + +HR+ H G +K ++C C K ++ R L H HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTG---EKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 799 EWEILLRDKVRICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWN 858
EW+ R + + C +C K F + +H ++ H K + C+EC K F R L H +
Sbjct: 10 EWQQRERRRYK-CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH-H 66
Query: 859 YIHQGIRNTGPN 870
+H G +GP+
Sbjct: 67 RVHTG---SGPS 75
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 974 RKKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKH 1030
R+++KCD CG ++ L +H+ H +GE P +KC C K F + L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTH---TGEKP----YKCDECGKAFIQRSHLIGH 65
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 950 QSKER---KCPKCEKEFSTPRYMRKHLR-----KKFKCDVCGNGYTSVKHLKRHKIKHMK 1001
Q +ER KC +C K FS + KH R K +KCD CG + HL H H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH---HRV 68
Query: 1002 ESGELPPS 1009
+G P S
Sbjct: 69 HTGSGPSS 76
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 669 CKVCGAEIKGS--LKEHMIVHTGERKYCCHICGKKM--RGKLKEHMLTHTGERPYA 720
C CG S L +H HTGE+ Y C CGK R L H HTG P +
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 1042 CKVCGAKIK--GNLQQHMETHSGEKKICCHICGKKL--RGRLNEHMLTHTGERPYA 1093
C CG +L +H TH+GEK C CGK R L H HTG P +
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1625 CKKCQLGFLSKNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLH 1673
C +C F ++L+ H +P+ C C K F+ + +L H ++H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKH 1142
ERP+ C FCG +++D S L H R H G RP +C ECG+ F +S + HLK H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 1265 NNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+ R F C CGK + L H+R H GY+P +C C K F +S +N H K+H N
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKH 769
ERP+ C CG T++ L H R H G RP C ECG+ F +S + HLK H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRH 523
ERPF C CG TY+ L+ H R H G RP C CG F + N HLK H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1063 EKKICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH 1114
E+ C+ CGK R L+ H H G RP +C CG F+D+S + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 264 QRVKTCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQH 314
+R C C KTY+ A G+ H R H RP C CGK F+ Q + +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 690 ERKYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKH 741
ER + C+ CGK R L H H G RP +C CG F+ + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKH 495
ERP C+ CGK R L H H G RP C CG ++ + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 975 KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWV 1034
+ F C+ CG Y L RH+ H+ G P S CP C K F + + +HL V
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHL---GYRPRS----CPECGKCFRDQSEVNRHLK-V 54
Query: 1035 HGNK 1038
H NK
Sbjct: 55 HQNK 58
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 359 VCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQH 411
C+ C TY A GL RH + HL C +C K F +QSE+ +H
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHL-------GYRPRSCPECGKCFRDQSEVNRH 51
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+P+ C+ C K + S L+ HR+ HL + C CG F + + H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKH 236
++ F C C KTY GL H H G + C C + F + + RHL H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 875 CHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRH 919
C++CG T + + L H AHLG +P C C + + + + RH
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRHI 1699
+P C C K + + L+ H++ HL R C CGK F + + RH+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGY-RPRSCPECGKCFRDQSEVNRHL 52
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 418 DKCYLCKICGA--RVKSNLKAHMRIHTGERPVCCHICGKKLR--GKLKDHMLTH 467
++ + C CG R S L H R H G RP C CGK R ++ H+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTV-FCKECNIGFYSSTHLHSHG 1175
ERPF C+ CG+++ S S H R H+GY C EC F + ++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH---------RRAHLGYRPRSCPECGKCFRDQSEVNRH- 51
Query: 1176 IKVHGLPP 1183
+KVH P
Sbjct: 52 LKVHQNKP 59
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 1183 PFICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDD 1236
PF C C K + L+ H + + C C K F ++ RHLK H +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHM 66
C+ C Y S L H +H G +P C C + + RHLK H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 34/86 (39%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQTIECEYCHNTFTFETGLMGVVTRDEWEIL 803
ERP+ C+ CG+++ S S H + H G++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP----------------------------- 32
Query: 804 LRDKVRICPKCNKEFYSDRTMRRHLK 829
R CP+C K F + RHLK
Sbjct: 33 -----RSCPECGKCFRDQSEVNRHLK 53
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1767 VFCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIH 1817
FC C + + L H +P +CP C K F ++ + H K+H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 475 CEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRH 523
C CG ++ YYL +H+R HTGE+PY C +C ++ A + + HL+RH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 715 GERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKH 769
G C CG F++ +YL +H+R H GE+PY C C + A +++ HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 1068 CHICGKKLRGR--LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH 1114
C CGK R LN H+ THTGE+PY CEFC + K+ LR H+ +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 1088 GERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKH 1142
G C +CG F+ YL IH+R H GE+P+ C C + A +++ HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 1271 CEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLH 1319
C CGK F YL H R HTG KPY C+ C QK++L H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRH 65
EC +C + S L HL +HTG KPY C C+ + L+ HL+RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 874 ECHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRHEAKHNK 925
EC YCG + L H+ H G KPY C FCE K SL+ H +H+K
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 695 CHICGKKMRGK--LKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKH 741
C CGK R L H+ THTGE+PY CE C K L H+ +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 578 ECNICGALFATKYTLQDHMNTHTGNK-YKCDVCD 610
EC+ CG F + Y L H+ THTG K YKC+ C+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 187 ECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKH 236
EC++C K + S L H+ HTGEK + CE C L+ HL +H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 449 CHICGKKLRGK--LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKH 495
C CGK R L H+ THTGE+P+ CE C K L H+ +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 423 CKICGARVKSN--LKAHMRIHTGERPVCCHIC 452
C CG +SN L H+R HTGE+P C C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 328 SNFECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNH 380
S+ EC +CG F S ++ H+ +HTG K + C C+ L+ H + H
Sbjct: 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 1243 CTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVH 1291
C+ C K S Y L H+ H + + CE C QK L H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 636 SKIQKCPICHKIFIRNYMLRKHLDFVHGNKYHSCKVC--GAEIKGSLKEHMIVH 687
S ++C C K F NY L HL G K + C+ C A K SL+ H+ H
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+ + C CGK F + L +H+RVHTG KPY C C K F+Q S L H+++H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKH 1142
E+PY C CG +F S L H R H GE+P+ C ECG++F+ S H + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKH 769
E+PY C CG F L H R H GE+PY C ECG++F+ S H + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+P+GC CG + L H R HTGE+PY C CG +F+ H + HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHT 1292
Y C C K S L H +H + + C CGK F Q L H+R+HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
KPY C C K F++ S L H+++H K + C CG F + + + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHT 353
+P+ C CGK F LVQH+ RVH G K ++C CG F + + +H HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHTGEKP-----YKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1063 EKKICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHN 1115
EK C CGK L +H HTGE+PY C CG +F S L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHGDKCYLCKICGARVKSN--LKAHMRIHT 442
++ Y C +C K F S +VQH+ G+K Y C CG N L H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHT 496
E+P C CGK L H HTGE+P+ C CG + L H R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 690 ERKYCCHICGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHN 742
E+ Y C CGK L +H HTGE+PY C CG F L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQTIECEYCHNTFTFETGLM 792
E+PY C ECG++F+ S H + H G K +C C F+ +GL+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLI 59
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQA 68
C C +S S L+ H HTG KPY C C ++ GL H + H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 418 DKCYLCKICGARVK--SNLKAHMRIHTGERPVCCHICGKKL--RGKLKDHMLTHT 468
+K Y C CG S L H R+HTGE+P C CGK L +H HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLKRH 1698
+P+ C C K F L H+++H + ++C CGK+F+ N+ L H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHT-GEKPYKCLECGKAFSQNSGLINH 61
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSH 1842
+P+ C C K F L H+++H +K +C CGK+F++ L +H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG-EKPYKCLECGKAFSQNSGLINH 61
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 269 CPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHER 316
C C K + + + H R VH+ +P++C CGK F L+ H+R
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 806 DKVRICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQGIR 865
+K C +C K F + +H ++VH K + C EC K F+ L HQ I
Sbjct: 12 EKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLIN-----HQRIH 65
Query: 866 NTGPN 870
+GP+
Sbjct: 66 TSGPS 70
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSH 1174
E+P+ C ECG++F+ S H + H G + C EC F ++ L +H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK--------CLECGKAFSQNSGLINH 61
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNH 380
+ C CG F + + H HTG K + C C ++ GL H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHS 237
+K + C C K + L H HTGEK + C C + F ++ L H H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 156 CEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHT 209
C CGK F+ + QH++ VH G +K ++C C K + GL +H HT
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTG---EKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr,
25 Structures
Length = 60
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIH-RKLH 1319
F CEVC + F ++ +L+ H R HT KPY C LC++ FT++ L H +K+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1092 YACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKK-HAGS 1145
+ CE C +F + +L+ H R H E+P+ C C ++F R H +K H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 719 YACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKK-HAG 771
+ CE+C F + +L H R H E+PY C C ++F R H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 473 FGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKR 522
F CEVC + + +L H R HT E+PY C C +F R H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 186 FECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVK-HSRMIKE 242
F C C++ + + L+ H +HT EK + C +CNR F +L RH K HS + E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1297 YACDLCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHVHETHA 1349
+ C++C++ F ++ L H + H N K + C LC F + + H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1682 CDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDH 1733
C+ C ++F HLKRH Y H + +PC LC++ F ++ +H +K H
Sbjct: 5 CEVCTRAFARQEHLKRH-YRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 43 YICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQCDICSKMFIEHHAMVKHRDWLHA 102
++C +C ++ + LKRH + H E Y C +C++ F +++H +H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-------EKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 810 ICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIHQG 863
+C C + F ++RH + H K + C C++ F R+ L RH IH G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1241 YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEH-KRVHTG 1293
+ C VC++ + LK H H N + + C +C + F ++ L H +++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 693 YCCHICGKKMRGK--LKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRK-HNG 743
+ C +C + + LK H +HT E+PY C +C F + L H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1710 FPCRLCSQEFDTKEQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKHKSR 1760
F C +C++ F +E K+H R H + + C LC+ T++ L++H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 977 FKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVH- 1035
F C+VC + +HLKRH H E + C C + FT L +H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-------YPCGLCNRAFTRRDLLIRHAQKIHS 55
Query: 1036 GN 1037
GN
Sbjct: 56 GN 57
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 1826 CDVCGKSFARTFHLKSHISSVHLKREQRKKHERKDHETQGLFSCDLCSYTSTQKYYLVKH 1885
C+VC ++FAR HLK H S H + + C LC+ T++ L++H
Sbjct: 5 CEVCTRAFARQEHLKRHYRS---------------HTNEKPYPCGLCNRAFTRRDLLIRH 49
Query: 1886 KSR 1888
+
Sbjct: 50 AQK 52
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1566 FPCRLCSQEFGTKKQRKKHERKDHETRGVFSCDLCSYTSTRKYYLVKHKSR 1616
F C +C++ F ++ K+H R H + C LC+ TR+ L++H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 359 VCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRDWVH 416
VC +C + LKRH ++H E + Y C C++ F + +++H +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNE-------KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKR 64
C C ++ + L H SHT KPY C +C ++ L RH ++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1068 CHICGKKLRGR--LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRK-HNG 1116
C +C + + L H +HT E+PY C C +F + L H +K H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 268 TCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLG 321
C +C + + + ++ H R H+ +P+ C C + F + L++H +++H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1077 GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGER----PFTCSECGQSFAAR 1132
G THTGE+PYAC C +F+ K L +H ++++ F CS+CG++F R
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 1133 SAFSLHLKKHAG 1144
+ + H AG
Sbjct: 61 NTMARHADNCAG 72
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 704 GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGER----PYMCSECGQSFAAR 759
G THTGE+PYAC C TF+ K L +H ++++ ++CS+CG++F R
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 760 SAFSLHLKKHAG 771
+ + H AG
Sbjct: 61 NTMARHADNCAG 72
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 1289 RVHTGYKPYACDLCSKQFTQKSTLNIHRK----LHLNIKDFICDLCGAKFYEFNTYVTHV 1344
R HTG KPYAC C K F QK L++H K + F+C CG F NT H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 1180 GLPPFICEHCSKPFTSKGNLTVHVKYYH----AKTLFECNICLKTFNFKTSYKRHL 1231
G P+ C HC K F K L +H K YH F C+ C KTF + + RH
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 36 SHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQCDICSKMFIEHHAMVK 95
+HTG KPY C C ++ + L H KR+ V + C C K F + M +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN---FVPAAFVCSKCGKTFTRRNTMAR 65
Query: 96 HRD 98
H D
Sbjct: 66 HAD 68
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 466 THTGERPFGCEVCGSTYKYKYYLAVHMRKHTGER----PYVCNYCGHSFAARPAFNLHL 520
THTGE+P+ C C T++ K L +H +++ +VC+ CG +F R H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 735 GVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKH--AGF-KQTIECEYCHNTFT 786
G R H GE+PY CS C ++F + +H K++ F C C TFT
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 493 RKHTGERPYVCNYCGHSFAARPAFNLHLKRH 523
R HTGE+PY C++C +F + ++H KR+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 351 SHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQ 410
+HTG K + CS C T+ + L H K + V A + C KC K F ++ M +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA---FVCSKCGKTFTRRNTMAR 65
Query: 411 HRDWVHG 417
H D G
Sbjct: 66 HADNCAG 72
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 1262 IHANNRVFTCEVCGKGFIQKRYLEEH-KRVH-TGYKPYA--CDLCSKQFTQKSTLNIH 1315
H + + C C K F QK+ L+ H KR H + P A C C K FT+++T+ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 806 DKVRICPKCNKEFYSDRTMRRHLKQVH---IEIKTFSCEECDKIFATREKLQRHWN--YI 860
+K C C+K F + + H K+ H F C +C K F R + RH +
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72
Query: 861 HQGI--RNTGPNQ 871
G+ N+GP+
Sbjct: 73 PDGVEGENSGPSS 85
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 660 FVHGNKYHSCKVCGAEIK--GSLKEHMIVHTGERKYCCHICGK--KMRGKLKEHMLTHTG 715
V G Y+ C VC SL+ H +H+ E+KY C C K + +H + HTG
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
ER Y C CG +F ++ H++ + + P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 1034 VHGNKCHICKVCGAKIK--GNLQQHMETHSGEKKICCHICGK--KLRGRLNEHMLTHTGE 1089
V G +IC VC +L++H HS EKK C C K L +H + HTGE
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
R Y C CG SF + ++ HI+ + + P
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 685 IVHTGERKYCCHICGKKM--RGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHN 742
++ G Y C +C + L+ H H+ E+ Y C C F Y H H
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 743 GERPYMCSECGQSFAARSAFSLHLK 767
GER Y C CG+SF S H+K
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIK 99
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 1236 DSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYK 1295
D YY C VC ++ L+ H IH+ + + C C K F Y +H+ HTG +
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 1296 PYACDLCSKQFTQKSTLNIHRK 1317
Y C C K F ++ H K
Sbjct: 78 RYQCLACGKSFINYQFMSSHIK 99
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLH 1138
L H H+ E+ Y C +C F Y H H GER + C CG+SF S H
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Query: 1139 LK 1140
+K
Sbjct: 98 IK 99
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 1259 HMLIHANNRVF-TCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRK 1317
H + + RV+ C VC + ++ L H +H+ K Y C C K F H
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 1318 LHLNIKDFICDLCGAKFYEFNTYVTHVHETHAILP 1352
H + + C CG F + +H+ H+ P
Sbjct: 72 HHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 415 VHGDKCYLCKICGARVK--SNLKAHMRIHTGERPVCCHICGK--KLRGKLKDHMLTHTGE 470
V G Y+C +C ++L+ H IH+ E+ C C K L H + HTGE
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
R + C CG ++ +++ H++ + P
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 460 LKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLH 519
L+ H H+ E+ + C C + Y H HTGER Y C CG SF + H
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Query: 520 LK 521
+K
Sbjct: 98 IK 99
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 1623 VFCKKCQLGFLS-KNELNVHNIKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQ 1681
+ CK+ + S + N+H+ ++ + C C+K+F T H+ +H R +Q
Sbjct: 26 IVCKRSYVCLTSLRRHFNIHSWEK----KYPCRYCEKVFPLAEYRTKHE-IHHTGERRYQ 80
Query: 1682 CDTCGKSFTGNNHLKRHIYSVHLKR---DTKF----PCR 1713
C CGKSF + HI SVH + D+K PCR
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCR 119
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 127 CPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKF 186
C +C Y T +RRH+ ++H +K PC C K F + +H ++ H G ++++
Sbjct: 25 CIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTG---ERRY 79
Query: 187 ECAHCSKTYLSRVGLEDHINN 207
+C C K++++ + HI +
Sbjct: 80 QCLACGKSFINYQFMSSHIKS 100
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 268 TCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKH 327
C +CK++Y +R H +HS + + C+ C K F + +HE H G ++
Sbjct: 24 ICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERR--- 78
Query: 328 SNFECFHCGAKFISRTHIADHMTS 351
++C CG FI+ ++ H+ S
Sbjct: 79 --YQCLACGKSFINYQFMSSHIKS 100
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 792 MGVVTRDEWEILLRDKVR-ICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATR 850
M V D +E+++ +V IC C + + ++RRH +H K + C C+K+F
Sbjct: 5 MKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLA 63
Query: 851 EKLQRHWNYIHQGIRNTGPNQLLECHYCGITKNNKTLLRDHISA 894
E +H I +TG + +C CG + N + HI +
Sbjct: 64 EYRTKH------EIHHTGERR-YQCLACGKSFINYQFMSSHIKS 100
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1682 CDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQGLFSC 1741
C C +S+ L+RH +++H + K+PCR C + F E R KHE H + + C
Sbjct: 25 CIVCKRSYVCLTSLRRH-FNIH-SWEKKYPCRYCEKVFPLAEYRTKHE-IHHTGERRYQC 81
Query: 1742 DLCSYTSTQKYYLVKH-KSRHIKD 1764
C + ++ H KS H +D
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQD 105
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 1768 FCKICQLGFLSKNELDVHNIKQHDAQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCD 1827
C +C+ ++ L H + + C C+K+F H+ IH ++ QC
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IHHTGERRYQCL 82
Query: 1828 VCGKSFARTFHLKSHISSVH 1847
CGKSF + SHI SVH
Sbjct: 83 ACGKSFINYQFMSSHIKSVH 102
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 641 CPICHKIFIRNYMLRKHLDFVHGNKYHSCKVCGA--EIKGSLKEHMIVHTGERKYCCHIC 698
C +C + ++ LR+H + K + C+ C + +H I HTGER+Y C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 699 GKKM 702
GK
Sbjct: 85 GKSF 88
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVED 76
C C Y + L H N H+ K Y C C+ + A+ +H H TG E
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH---TG----ER 77
Query: 77 MYQCDICSKMFIEHHAMVKHRDWLHA 102
YQC C K FI + M H +H+
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 39 GLKPYICHICKNSYVAAKGLKRHLKRHMQATGQLSVEDMYQCDICSKMF 87
G YIC +CK SYV L+RH H S E Y C C K+F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIH-------SWEKKYPCRYCEKVF 60
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 186 FECAHCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHSRMIKETSE 245
+ C C ++Y+ L H N H+ EK + C C + F +H + H
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH--------- 73
Query: 246 EFVETGSITREEWYKMVLQRVKTCPLCKKTYQSAKGMRLHIREVHSK 292
TG +R C C K++ + + M HI+ VHS+
Sbjct: 74 ----TG------------ERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 330 FECFHCGAKFISRTHIADHMTSHTGIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRA 389
+ C C ++ T + H H+ K + C C+ + A +H +H E
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE------ 76
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHG 417
Y+C C K FI M H VH
Sbjct: 77 -RRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 1072 GKKLRGRLNEHM-LTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFA 1130
K+++ + ++H L G Y C C S+ + LR H H+ E+ + C C + F
Sbjct: 2 NKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61
Query: 1131 ARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLPP 1183
+ H H G RR+ C C F + + SH VH P
Sbjct: 62 LAEYRTKHEIHHTGE---RRYQ-----CLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 354 GIKNHVCSICQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQHRD 413
G ++C +C+ +Y L+RH H E + Y C C+K+F +H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWE-------KKYPCRYCEKVFPLAEYRTKHEI 71
Query: 414 WVHGDKCYLCKICG 427
G++ Y C CG
Sbjct: 72 HHTGERRYQCLACG 85
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693-
723) Of Human Zinc Finger Protein 268
Length = 44
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+G +PY C CG +F+ KSYL IH+R H GE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+G +P+GC CG ++ K YL +HMR HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+G +PY C CG F++K YL +HMR H GE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+G +PY CSECG++F ++S +H++ H G K +
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 442 TGERPVCCHICGKKLRGK--LKDHMLTHTGERPFG 474
+G +P C CGK R K L HM THTGE+P G
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSG 40
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+G +P+ CSECG++F ++S +H++ H G
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F K YL H R HTG KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
+G KPY C C K F KS L IH + H K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 688 TGERKYCCHICGKKMRGK--LKEHMLTHTGERP 718
+G + Y C CGK R K L HM THTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 417 GDKCYLCKICGA--RVKSNLKAHMRIHTGERP 446
G K Y C CG R KS L HMR HTGE+P
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 291 SKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSN 329
S V+P+ C CGK F+S+ +L+ H R H G K S+
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIH-MRTHTGEKPSGPSS 43
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775-
807) Of Human Zinc Finger Protein 268
Length = 46
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F KSYL IH+R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+GC CG + K YL +HMR H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F +K YL +HMR H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY CSECG++F+++S +H++ H+G K +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 23/28 (82%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ CSECG++F+++S +H++ H+G
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F K YL H R H+G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C C K F+ KS L IH + H K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLRGK--LKDHMLTHTGERPFG 474
E+P C CGK K L HM TH+GE+P G
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSG 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 1241 YPCTV--CSKNLSSPYRLKTHMLIHANNRVFTC--EVCGKGFIQKRYLEEHKRVHTGYKP 1296
Y C+ C + ++L+ H+ H + F C E C KGF +L H HTG K
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 1297 YACDL--CSKQFTQKSTLNIHRKLHLNIK 1323
+ CD C +FT K+ + H NIK
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 38/120 (31%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGSHILR 1149
Y C F CG+++ L+ H+ KH GE+PF C E G
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEG----------------------- 40
Query: 1150 RHIGYTVFCKECNIGFYSSTHLHSHGIKVHGLPPFICEH--CSKPFTSKGNLTVHVKYYH 1207
C GF S HL H + G F C+ C FT+K N+ H +H
Sbjct: 41 -----------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 421 YLCKI--CGARVKSN--LKAHMRIHTGERPVCC--HICGKKLRG--KLKDHMLTHTGERP 472
Y+C CGA N L+AH+ HTGE+P C C K L H LTHTGE+
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 473 FGCEVCGSTYKYKYYLAVHMRKH 495
F C+ G ++ +M+KH
Sbjct: 64 FTCDSDGCDLRFT--TKANMKKH 84
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 459 KLKDHMLTHTGERPFGC--EVCGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSFAARP 514
KL+ H+ HTGE+PF C E C + ++L H HTGE+ + C+ C F +
Sbjct: 20 KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 79
Query: 515 AFNLHLKR 522
H R
Sbjct: 80 NMKKHFNR 87
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 719 YACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSE--CGQSFAARSAFSLHLKKHAGFKQ 774
Y C CG + W L H+ KH GE+P+ C E C + F + + H H G K
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 775 -TIECEYCHNTFTFETGL 791
T + + C FT + +
Sbjct: 64 FTCDSDGCDLRFTTKANM 81
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1274 CGKGFIQKRYLEEHKRVHTGYKPYAC--DLCSKQFTQKSTLNIHRKLHLNIKDFICDLCG 1331
CG + + L+ H HTG KP+ C + C K FT L H H K+F CD G
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 1045 CGAKIKGN--LQQHMETHSGEKKICC--HICGKKLRG--RLNEHMLTHTGERPYACEF-- 1096
CGA N LQ H+ H+GEK C C K L H LTHTGE+ + C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 1097 CGSSFKDKSYLRIHI-RKHN 1115
C F K+ ++ H R HN
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 705 KLKEHMLTHTGERPYAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSE--CGQSFAARS 760
KL+ H+ HTGE+P+ C E C F + +L H H GE+ + C C F ++
Sbjct: 20 KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 79
Query: 761 AFSLHLKK 768
H +
Sbjct: 80 NMKKHFNR 87
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 478 CGSTYKYKYYLAVHMRKHTGERPYVC 503
CG+ Y + L H+ KHTGE+P+ C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPC 36
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 20 CAMRYSSKSQLLDHLNSHTGLKPYIC--HICKNSYVAAKGLKRHLKRHMQATGQLSVEDM 77
C Y+ +L HL+ HTG KP+ C C+ + + L RH H + E
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH-------TGEKN 63
Query: 78 YQCDI--CSKMFIEHHAMVKHRDWLHAI 103
+ CD C F M KH + H I
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 644 CHKIFIRNYMLRKHLDFVHGNKYHSCKVCGAEIKG-----SLKEHMIVHTGERKYCCHIC 698
C + +N+ L+ HL G K CK G E KG L H + HTGE+ + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 699 GKKMRGKLKEHMLTH 713
G +R K +M H
Sbjct: 70 GCDLRFTTKANMKKH 84
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 335 CGAKFISRTHIADHMTSHTGIKNHVC--SICQSTYTTARGLKRHNKNHLREAGVLRADEM 392
CGA + + H++ HTG K C C+ +T+ L RH+ H E +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-------KN 63
Query: 393 YKCDK--CDKLFIEQSEMVQHRDWVHGDK 419
+ CD CD F ++ M +H + H K
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 189 AHCSKTYLSRVGLEDHINNHTGEKGHIC--EICNRDFYSDAMLKRHLVKHS 237
A C Y L+ H++ HTGEK C E C + F S L RH + H+
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 1090 RPYAC--EFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHA 1143
RPYAC E C F L HIR H G++PF C C ++F+ + H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 1267 RVFTCEV--CGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKLH 1319
R + C V C + F + L H R+HTG KP+ C +C + F++ L H + H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 717 RPYACEI--CGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHA 770
RPYAC + C F L H+R H G++P+ C C ++F+ + H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 3 LNLNKEKVRQLNVECHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHL 62
LN K+R C R+S +L H+ HTG KP+ C IC ++ + L H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 63 KRH 65
+ H
Sbjct: 70 RTH 72
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 471 RPFGCEV--CGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKRHT 524
RP+ C V C + L H+R HTG++P+ C C +F+ H++ HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 445 RPVCCHI--CGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHT 496
RP C + C ++ +L H+ HTG++PF C +C + +L H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 691 RKYCCHI--CGKKMR--GKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKH 741
R Y C + C ++ +L H+ HTG++P+ C IC F +L H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1793 QPHTCPV--CKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISS 1845
+P+ CPV C + F L H +IH K QC +C ++F+R+ HL +HI +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKH 1114
L H+ HTG++P+ C C +F +L HIR H
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1178 VHGLPPFIC--EHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQH 1234
V + P+ C E C + F+ LT H++ + + F+C IC++ F+ H++ H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1295 KPYACDL--CSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTHV 1344
+PYAC + C ++F++ L H ++H K F C +C F + TH+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 1242 PCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHT 1292
P C + S L H+ IH + F C +C + F + +L H R HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 419 KCYLCKI--CGARVKSN--LKAHMRIHTGERPVCCHICGKKLRGKLKDHMLTH 467
+ Y C + C R + L H+RIHTG++P C IC + DH+ TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF--SRSDHLTTH 68
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1639 NVHNIKQHDAQPHTCPV--CKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTGNNHLK 1696
N+ N +P+ CPV C + F LT H ++H + QC C ++F+ ++HL
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLT 66
Query: 1697 RHI 1699
HI
Sbjct: 67 THI 69
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 154 CPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHINNHT 209
CP E C +RF+ + +H ++ H G +K F+C C + + L HI HT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRI-HTG---QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 259 YKMVLQRVKTCPL--CKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHER 316
Y + R CP+ C + + + + HIR +H+ +P QC+ C + F HL H R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 180 IKQKKKFECA--HCSKTYLSRVGLEDHINNHTGEKGHICEICNRDFYSDAMLKRHLVKHS 237
+ + + + C C + + L HI HTG+K C IC R+F L H+ H+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 289 VHSKVRPHQC--KGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIA 346
V K+RP+ C + C + F L +H R +H G K F+C C F H+
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLT 66
Query: 347 DHMTSHT 353
H+ +HT
Sbjct: 67 THIRTHT 73
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein Mbp-1
Length = 57
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 1092 YACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
Y CE CG K S L+ HIR H RP+ C+ C SF + + H+K A S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 692 KYCCHICG--KKMRGKLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMR 739
KY C CG K LK+H+ THT RPY C C +FKTK L HM+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 473 FGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLK 521
+ CE CG K L H+R HT RPY C YC SF + H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 719 YACEICGGTFKTKWYLGVHMRKHNGERPYMCSECGQSFAARSAFSLHLKKHA 770
Y CE CG K L H+R H RPY C+ C SF + + H+K A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 875 CHYCGITKNNKTLLRDHISAHLGIKPYCCIFCEEKYFSKKSLKRH 919
C CGI ++L+ HI H ++PY C +C + +K +L +H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1065 KICCHICGKKLR--GRLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIR 1112
K C CG + + L +H+ THT RPY C +C SFK K L H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKPYICHICKNSYVAAKGLKRHLK 63
C C +R S L H+ +HT ++PY C C S+ L +H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRK 1317
+ CE CG + L++H R HT +PY C C+ F K L H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 421 YLCKICGARVK--SNLKAHMRIHTGERPVCCHIC--GKKLRGKLKDHM 464
Y+C+ CG R K S LK H+R HT RP C C K +G L HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 449 CHICGKKLR--GKLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMR 493
C CG + + LK H+ THT RP+ C C ++K K L HM+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1157 FCKECNIGFYSSTHLHSHGIKVH-GLPPFICEHCSKPFTSKGNLTVHVK 1204
C+EC I + L H I+ H + P+ C +C+ F +KGNLT H+K
Sbjct: 3 ICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 1255 RLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDL--CSKQFTQKSTL 1312
R+++H+ H CGK + + +L+ H R HTG KP++C C ++F + L
Sbjct: 14 RIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 1313 NIHRKLH 1319
+ HR+ H
Sbjct: 66 SRHRRTH 72
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 1078 RLNEHMLTHTGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAF 1135
R+ H+ +H G CG ++ S+L+ H R H GE+PF+CS C + FA
Sbjct: 14 RIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 1136 SLHLKKH 1142
S H + H
Sbjct: 66 SRHRRTH 72
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 459 KLKDHMLTHTGERPFGCEVCGSTYKYKYYLAVHMRKHTGERPYVCNY--CGHSFAARPAF 516
+++ H+ +H G CG TY +L H R HTGE+P+ C++ C FA
Sbjct: 14 RIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 517 NLHLKRH 523
+ H + H
Sbjct: 66 SRHRRTH 72
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 705 KLKEHMLTHTGERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS--ECGQSFAARSAF 762
+++ H+ +H G CG T+ +L H R H GE+P+ CS C + FA
Sbjct: 14 RIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 763 SLHLKKH 769
S H + H
Sbjct: 66 SRHRRTH 72
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 188 CAH--CSKTYLSRVGLEDHINNHTGEKGHICEI--CNRDFYSDAMLKRHLVKH 236
C+H C KTY L+ H HTGEK C C R F L RH H
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 432 SNLKAHMRIHTGERPVCCHICGKKLRGKLKDHMLTH 467
S+LKAH R HTGE+P C G + R D + H
Sbjct: 33 SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 878 CGITKNNKTLLRDHISAHLGIKPYCCIF--CEEKYFSKKSLKRHEAKH 923
CG T + L+ H H G KP+ C + CE ++ L RH H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+GC CG T+ K L+ H R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F KS L H R H GE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG TF K L H R H GE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG++F+ +S S H + H G K +
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F QK L H+R HTG KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY C+ C K F+QKS L+ H++ H K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C+ECG++F+ +S S H + H G
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLRGK--LKDHMLTHTGERPFG 474
E+P C+ CGK K L H THTGE+P G
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C CG KS L AH R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+PY CN CG +F+ + + H + HT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
+GE+P+GC CG + K YL VH R HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
+GE+PY C CG F KSYL +H R H GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGER 745
+GE+PY C CG F +K YL VH R H GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+G KPY C+ C K F+ KS L +H+++H K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAGFK 773
+GE+PY C+ECG+ F+++S +H + H G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P+ C+ECG+ F+++S +H + H G
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYK 1295
+ + + C CGK F K YL H+R+HTG K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
+GE+PY CN CG F+++ +H + HT
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHT 34
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 255-
287) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + CE CGK FI L+EH+R+HTG KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS 1123
E+PY CE CG +F S L+ H R H GE+P S
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ CE CG + + L H R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY CE CG F L H R H GE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K ++CEEC K F +LQ H IH G + +GP+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C+ CG S L+ H RIHTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1274 CGKGFIQKRYLEEHKRV-HTGYKPYACD--LCSKQFTQKSTLNIHRKLHLNIKDFICDLC 1330
CG+ F ++YL HK+ H K ++C C K F K L H KLH + +D+IC+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 1331 GA 1332
G
Sbjct: 75 GP 76
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 291 SKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFH--CGAKFISRTHIADH 348
S P GCG+ F ++++L H++ H I +F C CG F + H+ +H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQH-----IHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 349 MTSHTGIKNHVCSI 362
M H+ ++++C
Sbjct: 60 MKLHSDTRDYICEF 73
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 1189 CSKPFTSKGNLTVHVKYYHA-KTLFECN--ICLKTFNFKTSYKRHLKQHDDSVTY 1240
C + F+++ L H KY H + F C C K+FNFK K H+K H D+ Y
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 467 HTGERPFGCE--VCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHS 509
H ++ F C CG ++ +K +L HM+ H+ R Y+C + G S
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1648 AQPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCD--TCGKSFTGNNHLKRHI 1699
P P C +IF N+ L HKK ++ C CGKSF HLK H+
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 128 PICGDRYKSGTDMRRH--YRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKV 175
P CG + + + H Y+ +H + CP CGK FN K +K+H K+
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1792 AQPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCD--VCGKSFARTFHLKSHI 1843
P P C +IF N+ L HKK K+ C CGKSF HLK H+
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 1263 HANNRVFTCE--VCGKGFIQKRYLEEHKRVHTGYKPYACDL 1301
H + + F+C CGK F K++L+EH ++H+ + Y C+
Sbjct: 33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 155 PCEV--CGKRFNSIKRVKQHRKVVHMGIKQKKKFECAH--CSKTYLSRVGLEDHINNHTG 210
PC+ CG+ F++ + + H+K H+ +K F C C K++ + L++H+ H+
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHI---HQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 211 EKGHICEI 218
+ +ICE
Sbjct: 66 TRDYICEF 73
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 812 PKCNKEFYSDRTMRRHLKQVHIEIKTFSCEE--CDKIFATREKLQRHWNYIHQGIRN 866
P C + F + + + H K HI K+FSC E C K F ++ L+ H +H R+
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRD 68
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 715-
747) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK FIQK +L H+R+HTG KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG SF KS+L H R H GE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F QKS LN HR++H K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY+C+ECG+SF +S + H + H G K +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPS 41
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG +F K +L H R H GE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG ++ K +L H R HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+PY+CN CG SF + N H + HT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y+C CG KS+L H RIHTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C+ECG+SF +S + H + H G
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTG 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+G KPY C C K FTQ S L+IHR++H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+GE+PY C+ CG +F S L IH R H GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY+C ECG++F S S+H + H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P+ C ECG++F S S+H + H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGE 744
+GE+PY C+ CG F L +H R H GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+GE+P+ C+ CG + L++H R HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTG 1293
+ + + C+ CGK F Q L H+RVHTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
+GE+PYVC CG +F ++H + HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 495-
525) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+PY C CG +F+ KSYL IH R H GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 717 RPYACEICGGTFKTKWYLGVHMRKHNGE 744
+PY C CG F++K YL +H R H GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+P+ C CG ++ K YL +H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 745 RPYMCSECGQSFAARSAFSLHLKKHAG 771
+PY+C+ECG++F ++S +H + H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1118 RPFTCSECGQSFAARSAFSLHLKKHAG 1144
+P+ C+ECG++F ++S +H + H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603-
635) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG SF KS L +H + H GE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C ICG +F K L VH + H GE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C +C K FT+KS L++H+++H K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C +CG ++ K L VH + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C +CGK F +K L H+++HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C ICG KS L H +IHTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY CS CG+SF +S +H + H G K +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C+ CG ++ +LA H+R HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+P+ C+ CG F+ +L H+R H GE+P S
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C+ CG +F+ +L H+R H GE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C+ CGK F Q +L H R+HTG KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVKSN--LKAHMRIHTGERP 446
+K + CK CG + N L +H+RIHTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1085 THTGERPYACEFCGSSFKDKSYLRIHIRKHNGER--PFTCSECGQSFAARSAFSLHLKK 1141
TH+GE+PY C C + F +++HI + + E F C C A +S +HL+K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1289 RVHTGYKPYACDLCSKQFTQKSTLNIH--RKLHLNIKDFICDLCGAKFYEFNTYVTHVHE 1346
R H+G KPY C +C +FTQ T+ +H +K N+ F C C + H+ +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 1347 THA 1349
H+
Sbjct: 68 QHS 70
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 712 THTGERPYACEICGGTFKTKWYLGVHMRKHNGER--PYMCSECGQSFAARSAFSLHLKK 768
TH+GE+PY C IC F + +H+ + + E + C C A +S +HL+K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 439 RIHTGERPVCCHICGKKL--RGKLKDHMLTHTGER--PFGCEVCGSTYKYKYYLAVHMRK 494
R H+GE+P C+IC + G +K H+L E F C C + K L VH+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 811 CPKCNKEFYSDRTMRRHLKQVHIE-IKTFSCEECDKIFATREKLQRHWNYIH 861
C C+ F TM+ H+ Q H E + F C CD + A + L H H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 493 RKHTGERPYVCNYCGHSFAARPAFNLH-LKRHTERGDVRHIECQHSLKIIEYK 544
R H+GE+PY C C F +H L++HTE +V C H +I K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE--NVAKFHCPHCDTVIARK 58
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 678 GSLKEHMIVHTGERKYCCHICGKKM--RGKLKEHMLTHTGER--PYACEICGGTFKTKWY 733
GS H+GE+ Y C+IC + G +K H+L E + C C K
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 734 LGVHMRK 740
LGVH+RK
Sbjct: 61 LGVHLRK 67
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479-
511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F CE CGK F Q +L H+RVHTG KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF CE CG + +L H R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ CE CG F S+L H R H GE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+P+ CE CG F +L H R H GE+P S
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KP+ C+ C K+FTQ S L+ H+++H K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVKSN--LKAHMRIHTGERP 446
+K + C+ CG R N L +H R+HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ CE CG Y K+ L +H + HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY CE CG + +K+ L +H + H GERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS 1123
E+PY CE CG + K L +H + H GERP S
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + CE CGKG+ K L+ H++VHTG +P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVKS--NLKAHMRIHTGERP 446
+K Y C+ CG S NL H ++HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 199-
231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C+VCGK F Q +L+ H+RVHTG KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVK--SNLKAHMRIHTGERP 446
+KCY C +CG S+L+ H R+HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+ Y C+ CG F S+L+ H R H GE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+ + C+VCG + +L H R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+ Y C++CG F +L H R H GE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1297 YACDLCSKQFTQKSTLNIHRKLHLNIK 1323
Y CD+C K+F+Q S L H+++H K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s Rrna
55mer (Nmr Structure)
Length = 87
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1272 EVCGKGFIQKRYLEEHKRVHTGYKPYAC--DLCSKQFTQKSTLNIHRKLHLNI---KDFI 1326
E CGK F + L+ H+ HT PY C + C K+F+ S L H K+H KD
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 1327 CDLCGAKFYEFNTYVTHVHETH 1348
C G + Y+ HV E H
Sbjct: 67 CSFVGK---TWTLYLKHVAECH 85
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 719 YAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSE--CGQSFAARSAFSLHLKKHAGF-- 772
Y C E CG FK L VH H + PY C C + F+ S H K HAG+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 773 KQTIECEYCHNTFTF 787
K+ C + T+T
Sbjct: 62 KKDDSCSFVGKTWTL 76
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 130 CGDRYKSGTDMRRH-YRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFEC 188
CG +K ++ H + +CP E C KRF+ R+K+H K VH G KK C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSC 67
Query: 189 AHCSKTY 195
+ KT+
Sbjct: 68 SFVGKTW 74
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSE--CGQSFAARSAFSLHLKKHAG 1144
Y C F CG +FK + L++H H + P+ C C + F+ S H K HAG
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 1772 CQLGFLSKNELDVHNIKQHDAQPHTCP--VCKKIFVNKVTLAAHKKIHL--PIDKNCQCD 1827
C F N+L VH P+ CP C K F L H+K+H P K+ C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 1828 VCGKSFARTFHLKSHISSVH 1847
GK++ T +LK H++ H
Sbjct: 69 FVGKTW--TLYLK-HVAECH 85
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1621 YTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCP--VCKKIFVNKFNLTTHKKLHL--PM 1676
Y + C F N+L VH P+ CP C K F L H+K+H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 1677 NRNHQCDTCGKSFT 1690
++ C GK++T
Sbjct: 62 KKDDSCSFVGKTWT 75
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1272 EVCGKGFIQKRYLEEHKRVHTGYKPYAC--DLCSKQFTQKSTLNIHRKLHLNI---KDFI 1326
E CGK F + L+ H+ HT PY C + C K+F+ S L H K+H KD
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 1327 CDLCGAKFYEFNTYVTHVHETH 1348
C G + Y+ HV E H
Sbjct: 67 CSFVGK---TWTLYLKHVAECH 85
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 719 YAC--EICGGTFKTKWYLGVHMRKHNGERPYMCSE--CGQSFAARSAFSLHLKKHAGF-- 772
Y C E CG FK L VH H + PY C C + F+ S H K HAG+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 773 KQTIECEYCHNTFTF 787
K+ C + T+T
Sbjct: 62 KKDDSCSFVGKTWTL 76
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 130 CGDRYKSGTDMRRH-YRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFEC 188
CG +K ++ H + +CP E C KRF+ R+K+H K VH G KK C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSC 67
Query: 189 AHCSKTY 195
+ KT+
Sbjct: 68 SFVGKTW 74
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 1092 YACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSE--CGQSFAARSAFSLHLKKHAG 1144
Y C F CG +FK + L++H H + P+ C C + F+ S H K HAG
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 1772 CQLGFLSKNELDVHNIKQHDAQPHTCP--VCKKIFVNKVTLAAHKKIHL--PIDKNCQCD 1827
C F N+L VH P+ CP C K F L H+K+H P K+ C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 1828 VCGKSFARTFHLKSHISSVH 1847
GK++ T +LK H++ H
Sbjct: 69 FVGKTW--TLYLK-HVAECH 85
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1621 YTVFCKKCQLGFLSKNELNVHNIKQHDAQPHTCP--VCKKIFVNKFNLTTHKKLHL--PM 1676
Y + C F N+L VH P+ CP C K F L H+K+H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 1677 NRNHQCDTCGKSFT 1690
++ C GK++T
Sbjct: 62 KKDDSCSFVGKTWT 75
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG++F ARS+ ++H H+G K +
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPS 41
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F+ +S L IH H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C+ECG++F ARS+ ++H H+G
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F+ + L +H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG ++ + LA+H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLRGK--LKDHMLTHTGERPFG 474
E+P C+ CGK R + L H TH+GE+P G
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSG 42
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+PY CN CG +F AR + +H H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F +S+L IH+ H K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 491-
523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
ERPY C CG +F D+S L H + H GE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
R + C VCGK F + L +H+++HTG KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
ERPY+C+ CG++F RS H K H G K +
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
ERPY C +CG F + L H + H GE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
ERP+ C VCG + + L H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
++ Y+C +CG +SNL H +IHTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKL--RGKLKDHMLTHTGERPFG 474
ERP C +CGK R L H HTGE+P G
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+PY C +C K FT +S L H+K+H K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 690 ERKYCCHICGKKM--RGKLKEHMLTHTGERP 718
ER Y C +CGK R L +H HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ERP+ C+ CG++F RS H K H G
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
ERPY+C CG +F R H K HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ RV+ C+ CGK F QK L H+R+HTG P +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+G+R Y C+ CG SF+ K L +H R H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+G+R Y C+ CG +F+ K L +H R H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+G+R + C+ CG +++ K L +H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+G+R Y C ECG+SF + + +LH + H G
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
+G+R + C ECG+SF + + +LH + H GS
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+G + Y C C K F QK +L +H ++H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563-
595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F CE CGK F Q L H+RVHTG KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF CE CG + L H R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ CE CG F S L H R H GE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KP+ C+ C K+FTQ S L+ H+++H K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+P+ CE CG F L H R H GE+P S
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVKSN--LKAHMRIHTGERP 446
+K + C+ CG R N L +H R+HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+VC +++Y L VH R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ C SF+ S L +H R H GE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C++C +F+ L VH R H GE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY CD+C K F S+L +H+++H K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKIC--GARVKSNLKAHMRIHTGERP 446
+K Y C +C R S+L H RIHTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 637-
667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+G KPY+C+ C K FT KS L +H+ +H +K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+GE+PY+C CG +F KS L +H H G +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+GE+P+ C CG + +K L VH HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+GE+PY C+ECG++F +S +H H G K +
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPS 39
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + ++C CGK F K L HK VHTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+GE+PY+C CG F K L VH H G +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P++C+ECG++F +S +H H G
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPNQ 871
K +SC EC K F + +L H +H G++ +GP+
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKG-VHTGVKPSGPSS 43
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C CG ++ LA H R HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C CG SF S L H R H GE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+P+ C CG +F L H R H GE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+PF C+ECG+SF+ S + H + H G
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C CGK F L H+R+HTG KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+P+ C+ECG+SF+ S + H + H G K +
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPS 41
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGAR--VKSNLKAHMRIHTGERP 446
+K + C CG + S L H RIHTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 38.1 bits (87), Expect = 0.054, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNG 1116
+GE+PY+C CG FK K + H+R H+G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNG 743
+GE+PY+C +CG FK K + H+R H+G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTG 497
+GE+P+ C VCG +K K ++ H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
+GE+P++C CG F + S H++ H GS
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY C CG F + S H++ H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 435-
467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG SF KS L +H R H GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG +F K L VH R H GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK FI+K L H+R+HTG P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG ++ K L VH R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY CS+CG+SF +S +H + H G
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLN 1321
KPY C C K F +KS L++H+++H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ CS+CG+SF +S +H + H G
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C CG KS L H RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc
Finger Protein 32
Length = 42
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ CG +F K L +HIR H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+ CG + K L VH+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C+ CG F K L VH+R H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLN 1321
KPY CD C K F+QK +L +H ++H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY C +CG++F+ + + +H++ H G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
E+P+ C +CG++F+ + + +H++ H GS
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+ CGK F QK L H RVHTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHTERG 527
E+PY C+ CG +F+ + + +H++ HT G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 519-
551) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
E+PY C CG SF KS LRIH + H GER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY CS+CG+SF +S +H K H G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
E+P+ C CG ++ +K L +H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLN 1321
KPY C C K FT KS L IH+K H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIG 1153
E+P+ CS+CG+SF +S +H K H G RH G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG----ERHSG 42
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGER 745
E+PY C CG +F K L +H + H GER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544-
576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
R C CGK FIQ +L +H+R+HTG KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVK 323
RPH+C CGK F HL+QH+ R+H G K
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQ-RIHTGEK 39
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS 1123
ERP+ C CG SF ++L H R H GE+P S
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
ERP C CG ++ +L H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
ERP+ C CG +F +L H R H GE+P S
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+GE+PFGC C + K YL VH + H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+GE+P+ C C +F KSYL +H + H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+GE+P+ C C F +K YL VH + H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+G KP+ C C K F+ KS L +H++ H K
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc
Finger Protein 32
Length = 41
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERPFT 1121
+GE+PY C+ CG SF + L +H R H G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY C ECG+SF+ R + ++H + H G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+GE+P+ C+ CG ++ + LAVH R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAGS 1145
+GE+P+ C ECG+SF+ R + ++H + H GS
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+G KPY C C K F+Q+ +L +H +LH
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+GE+PY C+ CG +F + L VH R H G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHTERG 527
+GE+PY C CG SF+ R + +H + HT G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + + C+ CGK F Q+ L H+R+HTG P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581-
609) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+GE+PY C CG +F KS L IH R H GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+GE+P+ C CG + K L +H R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY C++CG++F +S +H + H G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGE 744
+GE+PY C CG F K L +H R H GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P+ C++CG++F +S +H + H G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+G KPY C C K F KS L IH++ H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724-
756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+RPY C CG +FK KS L H R H GE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+RPY C CG FKTK L H R H GE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+RP+ C CG +K K L H R HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+RPY C ECG++F +S+ H + H G K +
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPS 41
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311-
343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.094, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLH 1319
T KP+ CD C K F Q+S LN HR +H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
T E+P+ C+ C SF+ +S L H H GE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.70, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
T E+PF C+ C +++ + L H HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
F C+ C K F Q+ L H+ +HTG KP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
T E+P+ C+ C +F+ + L H H GE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 442 TGERPVCCHICGKKLRGK--LKDHMLTHTGERPFG 474
T E+P C C K R + L H + HTGE+P G
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1061 SGEKKICCHICGKKLRGR--LNEHMLTHTGERP 1091
+ EK C C K R R LN H + HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1116 GERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+PF C C +SF RSA + H H G
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 30.4 bits (67), Expect = 9.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K F C+ CDK F R L H IH G + +GP+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSH-RMIHTGEKPSGPS 44
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C CG +Y + +L H R HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C CGK + Q+ +L +H+RVHTG KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS 1123
E+P+ C CG S+ + +L H R H GE+P S
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEK 212
+K F+C C K+Y RV L H HTGEK
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+P+ C CG ++ + +L H R H GE+P S
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+PF C ECG+S+ R + H + H G
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTG 37
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 426-
458) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F + +L EH+R+HTGY+P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY CSECG++F + + H + H G++ +
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F ++L H R H G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640-
672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+VC K F QK +L +H++ HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+VC + K +LA H + HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C++C F K +L H + H GE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ C +F K++L H + H GE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C +CSK FTQK+ L H+K H K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E PF C CG + +K L +H + HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E P+ C CG F K+ L IH + H GERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E P+ C CG F K L +H + H GERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E PF CSECG+ F ++ +H K H G
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E P++CSECG+ F ++ +H K H G
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTG 37
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781-
813) From Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F QK L +H+R+HTG KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F K+ L H R H GE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C ECG++FA ++ + H + H G K +
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + K L H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+PY C CG F K L H R H GE+P S
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C CG K+NL H RIHTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C C K F QK+ L H+++H K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C ECG++FA ++ + H + H G
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG +++ YL+ H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F+ SYL H R H GE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F+ YL H R H GE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F YL H+R+HTG KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG+ F S S H + H G K +
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C +CG F + L VH R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C VCG + ++ L+VH R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F + L +H R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C VCGK F ++ L H+R+H+G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY CS CG++F+ R + S+H + H+G K +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C +C K F+ + +L++H+++H K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ CS CG++F+ R + S+H + H+G
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K F L RHW Y H G + +GP+
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 768-
800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1271 CEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
C CG+GF K +L +H+R+HTG KP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 547-
579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
R + C CGK FIQK L H+R+H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
ER Y C CG +F KS L +H R H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
ER Y CSECG++F +S S+H + H G K +
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPS 41
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1297 YACDLCSKQFTQKSTLNIHRKLHLNIK 1323
Y C C K F QKSTL++H+++H K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
ER Y C CG F K L +H R H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ER + CSECG++F +S S+H + H G
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRG 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY+CS+CG++F +S +H H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 34.7 bits (78), Expect = 0.55, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P+ CS+CG++F +S +H H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 34.3 bits (77), Expect = 0.70, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLNI 1322
+G KPY C C K FT KS L +H+ +H +
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTG 497
+GE+P+ C CG + +K L VH HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNG 1116
+GE+PY C CG +F KS L +H H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNG 743
+GE+PY C CG F K L VH H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
+GE+PYVC+ CG +F + +H HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 626-
654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY CE CG+ F+ L+ H+R H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARVK--SNLKAHMRIHTGERP 446
+K Y C+ICG R + LK+H+RIHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ CE+CG+ +++ L H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY CEICG F+ L H+R H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + CE+CG F + L+ H R+HTG P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 598-
626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY CE CG+ F ++LR H+ H G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ CE CG F+Q +L H +HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C+ CGAR ++L+AH+ IHTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY CE CG F +L H+ H G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region 659-
691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
E+PY C CG +F KS L IH + H GER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY CS+CG++F +S +H + H G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLN 1321
KPY C C K FT+KS L+IH++ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIG 1153
E+P+ CS+CG++F +S +H + H G RH G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG----ERHSG 42
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGER 745
E+PY C CG F K L +H + H GER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
E+P+ C CG + K L +H + HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+P+GC C T+ K L VH R HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C C+K F+ KS L +H++ H +K
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 17 CHHCAMRYSSKSQLLDHLNSHTGLKP 42
C CA +S KSQL+ H SHTG+KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 717 RPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+PY C C TF K L VH R H G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+PY C C +F KS L +H R H G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 745 RPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+PY CS+C ++F+ +S +H + H G K +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 48
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 1064 KKICCHICGKKLRG--RLNEHMLTHTGERPYA 1093
K++ C ICGK R LN H L+H+GE+PY+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 720 ACEICGGTFKTKWYLGVHMRKHNGERPY 747
ACEICG F+ ++L H H+GE+PY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 974 RKKFKCDVCGNGYTSVKHLKRHKIKHMKESGELP 1007
RK+ C++CG + V HL RHK+ H SGE P
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSH---SGEKP 40
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYACDLCS 1303
CE+CGK F +L HK H+G KPY+ S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 475 CEVCGSTYKYKYYLAVHMRKHTGERPY 501
CE+CG ++ Y+L H H+GE+PY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1093 ACEFCGSSFKDKSYLRIHIRKHNGERPFT 1121
ACE CG F+D +L H H+GE+P++
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 691 RKYCCHICGKKMRGK--LKEHMLTHTGERPYACEICGG 726
++ C ICGK R L H L+H+GE+PY+ G
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 810 ICPKCNKEFYSDRTMRRHLKQVHIEIKTFSCEECDKIFATREKLQRHWNYIH 861
+CP C + F S RHL+ +H + F C+ C F + L RH N H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 1185 ICEHCSKPFTSKGNLTVHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQ 1233
+C C + F SKG H++ HA +F C C TF RH+ +
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 156 CEVCGKRFNSIKRVKQHRKVVHMGIKQKKKFECAHCSKTYLSRVGLEDHIN 206
C VCG+ F S ++H +++H + F C +C T+ S GL HIN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAA----QVFPCKYCPATFYSSPGLTRHIN 77
Score = 34.3 bits (77), Expect = 0.70, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 1680 HQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHETQ 1736
H C CG+SF +RH+ +H + FPC+ C F + +H K H ++
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQ--VFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 747 YMCSECGQSFAARSAFSLHLK-KHAGFKQTIECEYCHNTFTFETGL 791
++C CG+SFA++ A HL+ HA Q C+YC TF GL
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAA--QVFPCKYCPATFYSSPGL 72
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 127 CPICGDRYKSGTDMRRHYRDLHDSTRKCPCEVCGKRFNSIKRVKQHRKVVH 177
CP+CG+ + S RH R LH + + PC+ C F S + +H H
Sbjct: 31 CPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 1122 CSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKVH 1179
C CG+SFA++ A HL+ H CK C FYSS L H K H
Sbjct: 31 CPVCGESFASKGAQERHLR--------LLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 475 CEVCGSTYKYKYYLAVHMRKHTGERPYVCNYCGHSFAARPAFNLHLKR 522
C VCG ++ K H+R + + C YC +F + P H+ +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 1092 YACEFCGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKK 1141
+ C CG SF K H+R + + F C C +F + + H+ K
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631-
663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F D+S L H + H GE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG++F RS H K H G K +
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY C C K FT +S L H+K+H K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C+ECG++F RS H K H G
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F + L H+++HTG KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F + L H + H GE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGARV--KSNLKAHMRIHTGERP 446
+K Y C CG +SNL H +IHTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + + L H + HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 397-
429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ CG +F+ S+L H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C++CG F+ +L H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+VCG ++ +L H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGA--RVKSNLKAHMRIHTGERP 446
+K Y C++CG RV S+L H +H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+VCGK F +L +H VH+G +P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFG 474
E+P C +CGK R L H H+GERP G
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSG 42
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C C + K L VH R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+P+ C C F TK L VH R H GE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C C +F KS L +H R H GE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+PF CSEC ++F +S +H + H G
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTG 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+PF C ECG+ F+ RSA ++H K H G
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+P+ C ECG+ F+ RSA ++H K H G K +
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KP+ C C K F+++S LN+H KLH K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C CG + + L VH + HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C CG F +S L +H + H GE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C CGKGF ++ L H ++HTG KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERPYMCS 750
E+P+ C CG F + L VH + H GE+P S
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+P+ C CG F+ R A N+H K HT
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHT 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668-
700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+ CGK F Q +L +H+RVHTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSN 329
+P++CK CGK F HL+QH+ RVH G K S+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGPSS 45
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ CG +F ++L H R H GE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+ CG + +L H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C+ CG F +L H R H GE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 508-
540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F Q +L H+R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K FTQ S L H+++H +K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVK 323
+P++C CGK F HL H+ R+H GVK
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQ-RIHTGVK 39
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + +LA H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG+ F S + H + H G K +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPS 41
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F S+L H R H G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F +L H R H G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K+F L H IH G++ +GP+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 385-
413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+G++PY C CG +F KS L IH R H GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+G++PY+C+ECG++F +S +H + H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLHLN 1321
+G KPY C+ C K F KS L IH ++H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
+G++PYVCN CG +F + +H + HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+G++P+ C CG + K L +H R HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+G++P+ C+ECG++F +S +H + H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGE 744
+G++PY C CG F K L +H R H GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 339-
371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + CE CGKGFI +R L H VHTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 648-
680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q +L H+RVHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K FTQ S L HR++H K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F S+L H R H G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + +LA H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVK 323
+P++C CGK F HL +H RRVH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RRVHTGGK 39
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG+ F S + H + H G K +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F Q L H+RVHTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+PY C CG +F S L H R H GE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+P+ C CG + LA H R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K F+ KL RH +H G + +GP+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F+Q S L H+++H K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 745 RPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+PY C+ECG++F+ S + H + H G K +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 717 RPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+PY C CG F L H R H GE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE+PY+C+ECG++F +S F H + H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+GE+PY C CG +F KS+ H R H GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE+P+ C+ECG++F +S F H + H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTG 1293
+ + + C CGK FI+K + H+R+HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 496 TGERPYVCNYCGHSFAARPAFNLHLKRHT 524
+GE+PYVC CG +F + F H + HT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 725-
757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C++CG +F + L H R H GE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C+ CG F L H R H GE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+ CG + L H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+ CGK F L H+R+HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHT 524
E+PYVC+YCG +F H + HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 396-
428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F S+L H R H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q +L H R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + +L H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K+F L HW IH G + +GP+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG+ F S + H + H G K +
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F +L H R H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY C+ C K FTQ S L H ++H K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 628-
660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHA 1143
ERPF C+ECG+ F RS + HL+ H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHA 770
ERP+ C+ECG+ F RS + HL+ H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
ERPF C CG + + +LA H+R H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
ERP+ C CG F +S+L H+R H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.51, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAG 771
+GE PY CSECG++F + H + HAG
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 33.9 bits (76), Expect = 0.98, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1115 NGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
+GE P+ CSECG++F + H + HAG
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+GE PY C CG +F K L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGE 744
+GE PY C CG F K L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+GE P+ C CG + K L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 379-
411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
F C CGK F +K L H+++HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1297 YACDLCSKQFTQKSTLNIHRKLHLNIK 1323
+ C C K FT+KSTL++H+K+H K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1120 FTCSECGQSFAARSAFSLHLKKHAG 1144
F C+ECG++F +S S+H K H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760-
792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C CGK F Q L H+R+HTG KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F S L H R H GE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + LA H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG++F+ S + H + H G K +
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPS 41
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F L H R H GE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K F+ KL RH IH G + +GP+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F+Q S L H+++H K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P C CG ++ + L VH R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C CG SF S L +H R H GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+P+ C CG +F L VH R H GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C++CG++F+ RS+ + H H G K +
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C++CG++F+ RS+ + H H G
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F +S L H H G++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHTER 526
E+PY CN CG +F+ R + H HT +
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F+ +S+L H+ +H K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 367-
399) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ CG SF+ S L H R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+ CG ++++ L H R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C+ CG +F+ L H R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 696-
728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F D S H R H G+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 977 FKCDVCGNGYTSVKHLKRHKIKHMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVH 1035
++C VC YT + + RH + K + ++ P CP C+K FT + H+ +H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----CPFCFKEFTRKDNMTAHVKIIH 64
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 1269 FTCEVCGKGFIQ-----KRYLEEHKRVHTGYKPYACDLCSKQFTQKSTLNIHRKL 1318
+ C+VC + + + Y+ HKR K Y C C K+FT+K + H K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1679 NHQCDTCGKSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDHE 1734
++C C + +T ++ RH + H + +PC C +EF K+ H + H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E P+ C CG + KY L H R H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E PY C CG F K+ L H R H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E PY C CG +F K L H R H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 16 ECHHCAMRYSSKSQLLDHLNSHTGLKP 42
ECH C +S K QL+ H +H G KP
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY C+ECG++F +S +H + HAG
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ C+ECG++F +S +H + HAG
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNG 1116
E+PY C CG +F KS L +H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K F KS L +H + H +
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSG 40
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTG 497
E+P+ C CG + +K L VH R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 745 RPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+PYMC+ECG++F+ S+ + H H G K +
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 687-
719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
R + C CGK F +K L H+R+HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
ER Y C CG +F KS L +H R H GE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
ER Y CSECG++FA +S +H + H G K +
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPS 41
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
ER + C CG + K L +H R HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
ER + CSECG++FA +S +H + H G
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
ER Y C CG F K L +H R H GE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (699-
729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
+G++P C CG +F+ S L H R H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
+G++P C CG T++ L+ H R H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q L +H+R+H+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
+G++P C CG TF+ L H R H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 742 NGERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
+G++P +C+ECG++F S S H + H+G K +
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPS 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 415-
447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
++F C C K F Q L H+R+HTG KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis Zinc
Finger Protein
Length = 28
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTG 1293
R ++C VCGK F K +E H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTG 497
RP+ C VCG + K+ + H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 126 KCPICGDRYKSGTDMRRHYRDLHDSTR--KCPCEVCGKRFNSIKRVKQHRKVVH 177
+C ICG + + H R ++ + PCE CGKRF V HR H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1292 TGYKPYACDLCSKQFTQKSTLNIHRKLH---LNIKDFICDLCGAKFYEFNTYVTHVHETH 1348
+G C++C QK++LN H++ H + F C+ CG +F + ++ H ++H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 1349 AIL 1351
L
Sbjct: 63 PAL 65
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 714 TGERPYACEICGGTFKTKWYLGVHMRKHN---GERPYMCSECGQSFAARSAFSLHLKK 768
+G CEICG T + K L H RKH + C CG+ F + + H K
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 1087 TGERPYACEFCGSSFKDKSYLRIHIRKHN---GERPFTCSECGQSFAARSAFSLHLKK 1141
+G CE CG + + K+ L H RKH F C CG+ F + + H K
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 30.8 bits (68), Expect = 7.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 1271 CEVCGKGFIQKRYLEEHKRVHT---GYKPYACDLCSKQFTQKSTLNIHR 1316
CE+CG QK L H+R H + C+ C K+F + ++ HR
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 1681 QCDTCG----KSFTGNNHLKRHIYSVHLKRDTKFPCRLCSQEFDTKEQRKKHERKDH 1733
QC+ CG + + N H ++H +V R FPC C + F+ + H K H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALR---FPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHT---GERPYVCNYCGHSF 510
+G CE+CG T + K L H RKH + C +CG F
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 498 ERPYVCNYCGHSFAARPAFNLHLKRHTER 526
E+PY CN CG +F N HL+ HT+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHT 1292
+ ++C VCGK F+ +L +H RVHT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGE 744
E+PY+C +CG F +L H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
E+PY+C CG +F ++L H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 41 KPYICHICKNSYVAAKGLKRHLKRHMQAT 69
KPY C++C ++V + L +HL+ H Q T
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
E+P+ C VCG + +L H+R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411-
441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
E+PY C C +F KS L +H R H GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGE 744
E+PY C C F TK L VH R H GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLH 1319
KPY C+ C K F KS L +H++ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
E+P+ C C + K L VH R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C CGK F L +H+R+HTG KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C CG + L H R HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C CG +F D L H R H GE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEK 212
+K F+C C K + +GL H HTGEK
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKH 769
ERPY C+ECG++F S HLK+H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKH 1142
ERP+ C+ECG++F S HLK+H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 283-
315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1063 EKKICCHICGKKL--RGRLNEHMLTHTGERPYA 1093
EK C ICGK R RLN H + HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ F C++CGK F + L H VHT KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKL--RGKLKDHMLTHTGERPFG 474
E+P C ICGK R +L H + HT E+P G
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 975 KKFKCDVCGNGYTSVKHLKRHKIKHMKESGELPPS 1009
K FKCD+CG + L RH + H E P S
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLH 1319
KP+ CD+C K F +S LN H +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ C+ CG SF +S L H H E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF C++CG ++ + L H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKH 769
E+PY+C+ECG++F RS H K H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAG 771
E+PY CSECG++F S +H + H+G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1085 THTGERPYACEFCGSSFKDKSYLRIHIRKHNGE 1117
+ T E+PY C CG +F S L +H R H+GE
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1117 ERPFTCSECGQSFAARSAFSLHLKKHAG 1144
E+P+ CSECG++F S +H + H+G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG +F+ S L H H GE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C+ECG++F A S + H H G K +
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLRG--KLKDHMLTHTGERPFG 474
E+P C+ CGK R L H + HTGE+P G
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 418 DKCYLCKICGA--RVKSNLKAHMRIHTGERP 446
+K Y C CG R SNL H IHTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
++PF C CG +++ K L H R HTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
++P+ C CG SF+ K L H R H GE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 183 KKKFECAHCSKTYLSRVGLEDHINNHTGEK 212
+K FEC HC K++ ++ L H HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 1183 PFICEHCSKPFTSKGNLTVHVKYY 1206
PF C HC K F +KGNL H + +
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIH 35
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1289 RVHTGYKPYACDLCSKQFTQKSTLNIHRKLHLNI 1322
R TG KP+ C C + F++ L +HRK H+ +
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
+P C CG +F S L H+R+H GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 732-
764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q +L H+ +HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K FTQ S L HR +H K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 836 KTFSCEECDKIFATREKLQRHWNYIHQGIRNTGPN 870
K + C EC K+F L RH IH G + +GP+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 564-
596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY C+ C K FTQ S L HR +H K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q +L H+ +HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG + +LA H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F S+L H H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 395-
427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ F CE CGKGF H+R H+G KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+P+ CE CG F S H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+P+ CE CG F T H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+PF CE CG + H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 341-
373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1271 CEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
C CGK F+Q +H+R+HTG KP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 294 RPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSN 329
R H+C CGK+F + +QH RR+H G K S+
Sbjct: 11 RGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGPSS 45
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 444 ERPVCCHICGKKLR--GKLKDHMLTHTGERPFG 474
E+P CH CGK R L H L HTGE+P G
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C CG ++ +LA H HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS 1123
E+PY C CG F+ S+L H H GE+P S
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 690 ERKYCCHICGKKMR--GKLKEHMLTHTGERP 718
E+ Y CH CGK R L H L HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C CG F+ +L H H GE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEH-KRVHTGYKPYACDL 1301
+ + C+ CGKGF + +L H K+VHT +P+ C +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRK-HNGERPFTC 1122
+PY C+ CG F +L HI++ H ERP C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
T E PF C CG T+ + +L+ H H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 744 ERPYMCSECGQSFAARSAFSLHLKKHAGFKQT 775
E+PY C ECG++F RS + H H G K++
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEKRS 41
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 556-
588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1266 NRVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+ + C+VC K F L +H+RVH+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGERP 746
E+PY C++C F L H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY CD+C K F+ ++L H+++H K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGERP 500
E+P+ C+VC + + L H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C+ C +F + L H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
E+P+ CE CG Y + L +H R H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYK 1295
+ + CE CGKG+ ++ L+ H+RVH G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 716 ERPYACEICGGTFKTKWYLGVHMRKHNGER 745
E+PY CE CG + + L +H R H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
E+PY CE CG + + L +H R H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIK 1323
KPY C+ C K + ++ L++H+++H+ K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 340-
372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 1295 KPYACDLCSKQFTQKSTLNIHRKLHLNIKD 1324
KPY C+ C K FTQ S L HR +H K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ + C CGK F Q +L H+ +HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 390 DEMYKCDKCDKLFIEQSEMVQHRDWVHGDK 419
++ YKC++C K+F + S +V+HR G+K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1089 ERPYACEFCGSSFKDKSYLRIHIRKHNGERP 1119
E+PY C CG F S+L H H GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYK 1295
F CEVC + F ++ YL+ H R HT K
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 470 ERPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
E+P+ C CG YK + L H R HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 312-
344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1269 FTCEVCGKGFIQKRYLEEHKRVHTGYKPYA 1298
+ C CGK F + L +H+++HTG KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 780-
812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTG 1293
+ + C+ C K FIQ +L +HKRVHTG
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1212 FECNICLKTFNFKTSYKRHLKQHDDSVT 1239
F C ICL F K + RHLK H D+++
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDTLS 35
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 1267 RVFTCEVCGKGFIQKRYLEEHKRVHTGYKP 1296
+++ C+ CGK F + L +H+R+H+G KP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 468 TGERPFGCEVCGSTYKYKYYLAVHMRKHTGE 498
+GE+ C CG + +K L +H R HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 773 KQTIECEYCHNTFTFETGLMGVVTRDEWEILLRDKVRICPKCNKEFYSDRTMRRHLKQVH 832
K+ +C C+ L ++ + E L R+ +CP C+ F+S + H +
Sbjct: 14 KEVYQCRLCN------AKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEH--ESK 64
Query: 833 IEIKTFSCEECDKIFATREKLQRHWNYIHQGIRNTGP 869
E K +C EC + F + + RH +H N P
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ-NNMAP 100
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
+PY C C F D L+ H+R H GE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 1104 KSYLRIHIRKHNGERPFTCSECGQSFAARSAFSLHLKKHAG 1144
K+ LRIH R H +RPF C+ C S S H+KK G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1264 ANNRVFTCEVCGKGFIQKRYLEEHKRVHTGYK 1295
++ ++FTCE C K F K L+ H R+HT K
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 471 RPFGCEVCGSTYKYKYYLAVHMRKHTGER 499
+ F CE C +K+K+ L H+R HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 744 ERPYMCSECGQSFAARSAFSLH 765
E PY+C +CG+SF R + ++H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVH 30
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGER 1118
+PY C C + K+ L +H+RKH GE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,753,951
Number of Sequences: 62578
Number of extensions: 2534112
Number of successful extensions: 14071
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6999
Number of HSP's gapped (non-prelim): 5798
length of query: 1930
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1817
effective length of database: 7,902,023
effective search space: 14357975791
effective search space used: 14357975791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)