RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4681
(1930 letters)
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 45.0 bits (106), Expect = 3e-04
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 153 KCPCEVCGKRFNSIKRVKQHRKVVH------MGIKQKKKFECAHCSKTYLSRVGLEDHIN 206
KCP C +R S+K +K+H K H I KK F L DH N
Sbjct: 153 KCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEI---RLFRSSTLRDHKN 209
Query: 207 ---NHTGEKGH-ICEICNRDFYSDAMLKRHL-VKHSR 238
G KGH +C C FY D L+RH ++H
Sbjct: 210 GGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEA 246
Score = 33.1 bits (75), Expect = 1.5
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 1539 DKLCGEDEESDELDDEEDTRNVTSDT-KFPCRL--CSQEFGTKKQRKKHERKDHETRGVF 1595
+ G +E+ + ED R+ D F C C + G+ K+ KKH + H G
Sbjct: 124 RQWKGREEKVGIFYEGEDVRDEMEDLLSFKCPKSKCHRRCGSLKELKKHYKAQH---GFV 180
Query: 1596 SCDLC---------SYTSTRKYYLVKHKSRHIKEYT----VFCKKCQLGFLSKNELNVHN 1642
C C R L HK+ ++E C C++ F +EL H
Sbjct: 181 LCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHC 240
Query: 1643 IKQHDAQPHTCPVCKKI 1659
+H+A C +C +
Sbjct: 241 RLRHEA----CHICDMV 253
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 33.9 bits (78), Expect = 0.026
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 487 YLAVHMRKHTGERPYVCNYCGHSFA 511
L HMR HTGE+PY C CG SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 33.5 bits (77), Expect = 0.037
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 706 LKEHMLTHTGERPYACEICGGTFKT 730
L+ HM THTGE+PY C +CG +F +
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.7 bits (75), Expect = 0.064
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 1079 LNEHMLTHTGERPYACEFCGSSFK 1102
L HM THTGE+PY C CG SF
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 32.4 bits (74), Expect = 0.084
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 1106 YLRIHIRKHNGERPFTCSECGQSFA 1130
LR H+R H GE+P+ C CG+SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 32.0 bits (73), Expect = 0.11
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 433 NLKAHMRIHTGERPVCCHICGKK 455
NL+ HMR HTGE+P C +CGK
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 31.6 bits (72), Expect = 0.15
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 679 SLKEHMIVHTGERKYCCHICGKK 701
+L+ HM HTGE+ Y C +CGK
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 31.6 bits (72), Expect = 0.18
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1283 YLEEHKRVHTGYKPYACDLCSKQFTQ 1308
L H R HTG KPY C +C K F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.2 bits (71), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 733 YLGVHMRKHNGERPYMCSECGQSFA 757
L HMR H GE+PY C CG+SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 1052 NLQQHMETHSGEKKICCHICGKK 1074
NL++HM TH+GEK C +CGK
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 460 LKDHMLTHTGERPFGCEVCGSTYKY 484
L+ HM THTGE+P+ C VCG ++
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1256 LKTHMLIHANNRVFTCEVCGKGFIQ 1280
L+ HM H + + C VCGK F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 34.9 bits (80), Expect = 0.10
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 268 TCPLCKKTYQSAKGMRLHIR-EVHSKVRPHQCKGCGKYFKSQRHLVQHERRVH 319
CPLC + S+ ++ HIR HSKV C CGK F++ + H + H
Sbjct: 75 VCPLCLMPFSSSVSLKQHIRYTEHSKV----CPVCGKEFRNTDSTLDHVCKKH 123
Score = 31.4 bits (71), Expect = 1.5
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 1183 PFICEHCSKPFTSKGNLTVHVKYY-HAKTLFECNICLKTFNFKTSYKRHL-KQHDDSVT 1239
P++C C PF+S +L H++Y H+K C +C K F S H+ K+H+ V+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV---CPVCGKEFRNTDSTLDHVCKKHNICVS 128
Score = 30.6 bits (69), Expect = 3.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1794 PHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVH 1847
P+ CP+C F + V+L H + + + C VCGK F T H+ H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRY---TEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 36.6 bits (84), Expect = 0.13
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 1642 NIKQHDAQPHTCPV--CKKIFVNKFNLTTHKK------------------LHLPMNRNHQ 1681
+K D +P+ CPV C K + N+ L H + ++ ++
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 1682 CDTCGKSFTGNNHLKRHIYSVHL 1704
C+ C K + N LK H H
Sbjct: 401 CEVCDKRYKNLNGLKYHRKHSHD 423
Score = 35.5 bits (81), Expect = 0.33
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 22/83 (26%)
Query: 117 RQLVIKNAR--KCPI--CGDRYKSGTDMRRHYRDLHDSTRKCP----------------- 155
R L +K+ + KCP+ C +YK+ ++ H H + +
Sbjct: 340 RMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPY 399
Query: 156 -CEVCGKRFNSIKRVKQHRKVVH 177
CEVC KR+ ++ +K HRK H
Sbjct: 400 RCEVCDKRYKNLNGLKYHRKHSH 422
Score = 33.5 bits (76), Expect = 1.1
Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 28/135 (20%)
Query: 937 IQDLSMDQYRELVQSKERKCPKC----EKEFSTPRYMRKHLRKK-FKCDV--CGNGYTSV 989
I M R+L + K E+ TP M K K +KC V C Y +
Sbjct: 305 ISTGEMIDVRKLPCTNSSSNGKLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQ 364
Query: 990 KHLKRHKIK-HMKESGELPPSMIHKCPTCYKIFTENHALKKHLDWVHGNKCHICKVCGAK 1048
LK H + H + EN + +K + +K + C+VC +
Sbjct: 365 NGLKYHMLHGH-----------------QNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR 407
Query: 1049 IKGN--LQQHMETHS 1061
K L+ H HS
Sbjct: 408 YKNLNGLKYHR-KHS 421
Score = 33.2 bits (75), Expect = 1.4
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 260 KMVLQRVKTCPL--CKKTYQSAKGMRLHIREVH------------------SKVRPHQCK 299
K+ + CP+ C K Y++ G++ H+ H +K +P++C+
Sbjct: 343 KVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCE 402
Query: 300 GCGKYFKSQRHLVQHERRVHL 320
C K +K+ L H + H
Sbjct: 403 VCDKRYKNLNGLKYHRKHSHD 423
Score = 33.2 bits (75), Expect = 1.6
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 1229 RHLKQHDDSVTYYPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGKGFIQKRYLEEHK 1288
R LK D P C+K + LK HML H + E E+
Sbjct: 340 RMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQKLHENPSP--------EKMN 390
Query: 1289 RVHTGYKPYACDLCSKQFTQKSTLNIHRK 1317
KPY C++C K++ + L HRK
Sbjct: 391 IFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419
Score = 31.6 bits (71), Expect = 4.2
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 1786 NIKQHDAQPHTCPV--CKKIFVNKVTLAAHKK------------------IHLPIDKNCQ 1825
+K D +P+ CPV C K + N+ L H I DK +
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 1826 CDVCGKSFARTFHLKSHISSVHL 1848
C+VC K + LK H H
Sbjct: 401 CEVCDKRYKNLNGLKYHRKHSHD 423
Score = 31.2 bits (70), Expect = 5.6
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 20/88 (22%)
Query: 354 GIKNHVCSI--CQSTYTTARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMVQH 411
K + C + C Y GLK H + ++ E +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH----------------GHQNQKLHENPSPEKM 389
Query: 412 RDWVHGDKCYLCKICGARVKSN--LKAH 437
+ DK Y C++C R K+ LK H
Sbjct: 390 NIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
Score = 31.2 bits (70), Expect = 6.1
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 21/82 (25%)
Query: 464 MLTHTGERPFGCEV--CGSTYKYKYYLAVHMR---------------KHTG----ERPYV 502
ML +P+ C V C YK + L HM K ++PY
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 503 CNYCGHSFAARPAFNLHLKRHT 524
C C + H K
Sbjct: 401 CEVCDKRYKNLNGLKYHRKHSH 422
Score = 31.2 bits (70), Expect = 6.2
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 710 MLTHTGERPYACEI--CGGTFKTKWYLGVHMR---------------KHNG----ERPYM 748
ML +PY C + C +K + L HM K N ++PY
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 749 CSECGQSFAARSAFSLHLK 767
C C + + + H K
Sbjct: 401 CEVCDKRYKNLNGLKYHRK 419
Score = 30.8 bits (69), Expect = 7.9
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 153 KCPCEVCGKRFNSIKRVKQHRKVVHMGIK---------------QKKKFECAHCSKTYLS 197
KCP E C K++ + +K H H K + K + C C K Y +
Sbjct: 351 KCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410
Query: 198 RVGLEDHINNHT 209
GL+ H +
Sbjct: 411 LNGLKYHRKHSH 422
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only].
Length = 467
Score = 35.4 bits (81), Expect = 0.35
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 1119 PFTCSECGQSFAARSAFSLHLKKHAGSHILRRHIGYTVFCKECNIGFYSSTHLHSHGIKV 1178
P +C SF+ S + HL+ + +H ++ C F + L H +
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLR--SVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH 346
Query: 1179 HGLPPFIC--EHCSKPFTSKGN---LTVHVKYYHAKT--LFEC--NICLKTFNFKTSYKR 1229
+ P + S F+ N +Y K E N C++ F ++
Sbjct: 347 TSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSL 406
Query: 1230 HLKQHDDSVTY-YPCTVCSKNLSSPYRLKTHMLIHANNRVFTCEVCGK 1276
H+ H Y CSK+ + Y L H IH N+ C +
Sbjct: 407 HIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS 454
Score = 35.1 bits (80), Expect = 0.44
Identities = 32/170 (18%), Positives = 49/170 (28%), Gaps = 8/170 (4%)
Query: 295 PHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKHSNFECFHCGAKFISRTHIADHMTSHTG 354
P + K C F L +H R V+ + +K + CG F + H+ HT
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 355 IKNHVCSICQSTYT-----TARGLKRHNKNHLREAGVLRADEMYKCDKCDKLFIEQSEMV 409
I + S+ + + + C + K S +
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 410 QHRDWVHGDKCYLCKICGARVK--SNLKAHMRIHTGERPVCCHICGKKLR 457
C C NL H +IHT P+ C I R
Sbjct: 409 ITHLSFRPYNCK-NPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRR 457
Score = 32.7 bits (74), Expect = 1.9
Identities = 50/309 (16%), Positives = 88/309 (28%), Gaps = 57/309 (18%)
Query: 1079 LNEHMLTHTGERPYACEF--CGSSFKDKSYLRIHIRKHNGERPFTCSECGQSFAARSAFS 1136
L H+ +HTGE+P C + C SF L H+R H+ S+ ++++ S
Sbjct: 49 LTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSS 108
Query: 1137 -------------------------------LHLKKHAGSHILRRHIGYTVFCKECN--- 1162
L + ++ L + +V + N
Sbjct: 109 SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLH 168
Query: 1163 ---------IGFYSSTHLHSHGIKVHGLPPFICEHCSKPFTSKGNLTVHVKYYHAKTLFE 1213
S+ L +P S + + ++ +
Sbjct: 169 PPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLP 228
Query: 1214 CNICLKTF--NFKTSYKRHLKQHDDSVTYYPCTVCSKNLSSPYRLK---THMLIHANNR- 1267
+ + + L D S + S +S +
Sbjct: 229 LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSL 288
Query: 1268 VFTCEVCGKGFIQKRYLEEHKR--VHTG--YKPYACD--LCSKQFTQKSTLNIHRKLHLN 1321
+ C F + L H R H+G KP++C LC K F++ L H LH +
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 1322 IKDFICDLC 1330
I L
Sbjct: 349 ISPAKEKLL 357
Score = 32.7 bits (74), Expect = 1.9
Identities = 36/177 (20%), Positives = 55/177 (31%), Gaps = 17/177 (9%)
Query: 1183 PFICEHCSKPFTSKGNLT------VHVKYYHAKTLFECNICLKTFNFKTSYKRHLKQHDD 1236
P + C+ F+ LT H ++C K F+ + KRH+ H
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 1237 --SVTYYPCTVCSKNLSSPYRLKT----HMLIHANNRVFTCEV--CGKGFIQKRYLEEHK 1288
SK N++ C + F + L H
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 1289 RVHTGYKPYACD--LCSKQFTQKSTLNIHRKLHLNIKDFICDLCGAKFYEFNTYVTH 1343
H ++PY C CSK F + L H+K+H N +C + F H
Sbjct: 409 ITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILK-SFRRDLDLSNH 464
Score = 32.7 bits (74), Expect = 2.3
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 1090 RPYACEFCGSSFKDKSYLRIHIRKHNGERPFTCS--ECGQSFAARSAFSLHLKKHAGSHI 1147
RP +C C SF +L HIR H GE+P CS C +SF+ S HL+ H +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 1148 LR 1149
Sbjct: 92 DL 93
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction that
requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 32.7 bits (75), Expect = 0.69
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1531 RHLVEEHSDKLCGEDEESDELDDEED 1556
+HLV D+ ++E+ +E DDEED
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEED 129
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 33.1 bits (76), Expect = 1.7
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 422 LCKICGARVKS-NLKAHMRIHTGERPVCCHICGKKLRGKLKDHMLTHTGERPFGCEVCGS 480
LC+ CG + N + + +H + CH CG + P C CGS
Sbjct: 437 LCRDCGYIAECPNCDSPLTLHKATGQLRCHYCG-------------YQEPIPQSCPECGS 483
Query: 481 TY 482
+
Sbjct: 484 EH 485
Score = 31.9 bits (73), Expect = 4.7
Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 20/62 (32%)
Query: 1068 CHICGKKLRGRLNEHMLTHTGERPYACEFCGSSF---KDKSYLRIHIRKHNGERPFTCSE 1124
C CG C C S K LR H + P +C E
Sbjct: 438 CRDCGYIAE-----------------CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPE 480
Query: 1125 CG 1126
CG
Sbjct: 481 CG 482
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 32.2 bits (74), Expect = 2.0
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 20/61 (32%)
Query: 764 LHLKKHAGFKQTIE---------CEYCHNTFTFETGLMGVVTRDEWEILLRDKVRICPKC 814
LH + AG + IE C C + + + + R++V CPKC
Sbjct: 91 LHQR--AGSPKVIELHGSLFRVRCTKCGKEYPRD---------ELQADIDREEVPRCPKC 139
Query: 815 N 815
Sbjct: 140 G 140
>gnl|CDD|224908 COG1997, RPL43A, Ribosomal protein L37AE/L43A [Translation, ribosomal
structure and biogenesis].
Length = 89
Score = 30.0 bits (68), Expect = 2.3
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 1793 QPHTCPVCKKIFVNKVTLAAHKKIHLPIDKNCQCDVCGKSFARTFHLKSHISSVHLKREQ 1852
H CP C + K+I I +C CG FA + + +KR
Sbjct: 34 AKHVCPFCGR--------TTVKRIATGI---WKCRKCGAKFAGGAYTPVTPAGKAVKRTI 82
Query: 1853 RKKHERK 1859
R++ E K
Sbjct: 83 RREVEMK 89
Score = 28.9 bits (65), Expect = 6.8
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 1649 QPHTCPVCKKIFVNKFNLTTHKKLHLPMNRNHQCDTCGKSFTG 1691
H CP C + TT K++ + +C CG F G
Sbjct: 34 AKHVCPFCGR--------TTVKRIATGI---WKCRKCGAKFAG 65
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 30.3 bits (69), Expect = 2.5
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 268 TCPLCKKTYQSAKGMRLHIREVHSKVRPHQCKGCGKYFKSQRHLVQHERRVHLGVKKIKH 327
C C T + + H+ + H P + +Y L+ + R KI H
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGFFIPER-----EYLVDLEGLLNYLRE------KI-H 48
Query: 328 SNFECFHCGAKFISRTHIADHMTS--HTGI 355
EC +CG +F S + HM H I
Sbjct: 49 EGNECLYCGKQFKSLEALRQHMRDKGHCKI 78
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 32.7 bits (74), Expect = 2.7
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 27/112 (24%)
Query: 1631 GFLSKNELN-------VHN--IKQHDAQPHTCPVCKKIFVNKFNLTTHKKLHLPM-NRNH 1680
G +NELN +HN ++ D +CP C + F++ L P+ R H
Sbjct: 432 GVAEENELNTFGLTKLLHNPSWQKDDESSDSCPSCGRAFIS---------LSRPLGTRAH 482
Query: 1681 QCDTCGKSFTGNNHLKRHIYS-VHLKR-------DTKFPCRLCSQEFDTKEQ 1724
C +CG KR YS L + + + C C +E++T Q
Sbjct: 483 HCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVSQ 534
>gnl|CDD|236585 PRK09604, PRK09604, UGMP family protein; Validated.
Length = 332
Score = 32.0 bits (74), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1686 GKSFTGNNHLKRHIYSVHLKRDTKFPC 1712
K G NHL+ H+ + L+ + +FP
Sbjct: 103 NKPLIGVNHLEGHLLAPFLEEEPEFPF 129
>gnl|CDD|220551 pfam10071, DUF2310, Zn-ribbon-containing, possibly
nucleic-acid-binding protein (DUF2310). Members of this
family of proteobacterial zinc ribbon proteins are
thought to bind to nucleic acids, however their exact
function has not as yet been defined.
Length = 259
Score = 31.5 bits (72), Expect = 3.6
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 948 LVQSKERKCPKCEKEF--STPRYMRKHLRKKFKCDVC 982
L + RKCP C ++ + P + FKCD C
Sbjct: 216 LASEQARKCPSCGGDWRLAEPLHDIFD----FKCDKC 248
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 31.8 bits (72), Expect = 4.7
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
Query: 76 DMYQCDICSKMF----IEHHAMVKHRDWLHAIHFRSEKNLTSEEWRQLVIKNARKCPI-- 129
+ C+ C + F +E H V H EK Q+V A CP+
Sbjct: 452 NHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKE-------QMVQHQASTCPLRL 504
Query: 130 -----CGDRYKSGT---DMRRHYRDL--HDST---RKCPCEVCGKRFNSIKRVKQHRKVV 176
CGD ++G D+R R + H+S R PC+ CG R +K + H+ V
Sbjct: 505 ITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCG-RSVMLKEMDIHQIAV 563
Query: 177 H 177
H
Sbjct: 564 H 564
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger is
the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be
any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those that
are important for the stable fold of the zinc finger. The
final position can be either his or cys. The C2H2 zinc
finger is composed of two short beta strands followed by
an alpha helix. The amino terminal part of the helix
binds the major groove in DNA binding zinc fingers. The
accepted consensus binding sequence for Sp1 is usually
defined by the asymmetric hexanucleotide core GGGCGG but
this sequence does not include, among others, the GAG
(=CTC) repeat that constitutes a high-affinity site for
Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.3 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1094 CEFCGSSFKDKSYLRIHIRKH 1114
C CG SF KS L+ H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 31.4 bits (71), Expect = 5.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 1205 YYHAKTLFECNICLKTFNFKTSYKRHLKQ 1233
Y L+ C CLK K S RHL +
Sbjct: 42 YASCTKLYICEYCLKYMRKKKSLLRHLAK 70
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.4 bits (61), Expect = 5.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1092 YACEFCGSSFKDKSYLRIHIRKH 1114
Y C CG FK KS LR H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 31.1 bits (71), Expect = 7.4
Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 20/56 (35%)
Query: 678 GSLKEHMIVHTGERKYC--CHICGKKMRGKLKEHMLTHTGERP----YACEICGGT 727
S E + + GE C CG KM Y CE CG T
Sbjct: 908 HSSTELLELQLGEAADAPLCPTCGTKM--------------VRNGSCYVCEGCGST 949
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.446
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 93,052,685
Number of extensions: 8782603
Number of successful extensions: 12730
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12622
Number of HSP's successfully gapped: 315
Length of query: 1930
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1819
Effective length of database: 6,014,308
Effective search space: 10940026252
Effective search space used: 10940026252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (29.2 bits)