BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4683
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKD 110
T + + C C + F K+ +H+R H + + C C + +Q+ L H+ H +
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 111 YNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNY 170
C C F L H +P+ C C K F + NL TH++ H ++ Y
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-EKPY 162
Query: 171 QCD 173
+C
Sbjct: 163 KCP 165
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKD 110
T + + C C + F + + H+R H + ++C C + +Q +L H+ H +
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 111 YNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLA 165
C C F ++ L+ H +P+ C C K F + L H++ H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 52 SDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDY 111
+ + C C + F + +H+R H + + C C + + K L +H+ H +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 112 NVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQ 171
C C F + L H +P+ C C K F +L H++ H ++ Y+
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-EKPYK 135
Query: 172 CDTYFYEGNSLAWED 186
C G S + ED
Sbjct: 136 CPEC---GKSFSRED 147
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHI-- 108
+ + C C ++F +K K H RK H + F C C +K L++H++R+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 109 KDYNVF-CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH 159
+ VF C +CQ F + EL +H + P+ CS C + F+ KK+L +H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKD--HATQGLFSCDLCSYTSTQKYYLVKHKSRHI 108
T + F C C + + KE +HE ++ + ++ +F+C +C T ++ L H H
Sbjct: 31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90
Query: 109 KDYNVFCKICQLGFLSKNELNVHNIKQH 136
+ C C F+ K +L H IK H
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 112 NVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHK 160
V C C FLSK L VHN K +P C C K + K+NL H+
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 81 TQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQP 140
T+ F C C T+ Y L+ H+ H + C IC F ++ L H +P
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 141 HTCSVCKKIFVNKKNLTTHKKIHL 164
C C K F + L HK +H+
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHM 97
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFC 115
F C+ C + F HER H + ++CD+C ++ +L H+ H K+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 116 KICQLGFLSKNELNVH 131
+ C GF L VH
Sbjct: 77 QECGKGFCQSRTLAVH 92
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 86 SCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQH---CAQPHT 142
+C++C Y+L +HK H + C +C L F K+ ++ H ++ H +P+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYI 67
Query: 143 CSVCKKIFVNKKNLTTH-KKIH 163
C C K F +L H K++H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 112 NVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH-LALDRNY 170
V C+IC F LN H + +P++C VC F K ++ H + H ++ + Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 171 QCDT 174
C +
Sbjct: 67 ICQS 70
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PH 141
++C + C +QK L H H C+IC F + LN H I+ H + P
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPF 63
Query: 142 TCSVCKKIFVNKKNLTTHKKIHL 164
C +C + F T H KIHL
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHL 86
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + ++RH K
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICG----RKFATLHTRTRHTK 83
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCS 144
F C +C + + L H H C+ C F K+++ H +PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 145 VCKKIFVNKKNLTTHKKIHLA 165
VC K F NL TH + H
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCS 144
+ C C + +Q L KH+ H + C C F ++L H +P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 145 VCKKIFVNKKNLTTHKKIH 163
C K F +L+ H++ H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFC 115
+ C C + F +KH+R H + + C C + +Q L KH+ H + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 116 KICQLGFLSKNELNVH 131
C F + L+ H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQC 172
+P+ C C K F NL H++ H ++ Y+C
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTG-EKPYKC 35
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PH 141
++C + C +Q L +H H C+IC F + L H I+ H + P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPF 63
Query: 142 TCSVCKKIFVNKKNLTTHKKIHL 164
C +C + F H KIHL
Sbjct: 64 ACDICGRKFARSDERKRHTKIHL 86
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 49 NVTSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH- 107
+ D +PC+ C + F K QR +H H + C +C K++LV H H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 108 -IKDYNVFCKICQLGFLSKNELNVH 131
IK Y C IC F+ ++ + H
Sbjct: 62 GIKPYE--CNICAKRFMWRDSFHRH 84
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 118 CQLG--FLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD 173
CQ G F K++ + H +P+ C VC K F K +L H KIH + + Y+C+
Sbjct: 13 CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-KPYECN 69
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 84 LFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCA-QPHT 142
L+ C C + T K +H S H+ C +C F K+ L V ++K H +P+
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHL-VGHMKIHTGIKPYE 67
Query: 143 CSVCKKIFVNKKNLTTH 159
C++C K F+ + + H
Sbjct: 68 CNICAKRFMWRDSFHRH 84
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
C CQ F K L H +P+ C++C F NL TH +IH
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVH 131
+ CD C + K L HK+ H + C IC F L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PH 141
++C + C ++ L +H H C+IC F + L H I+ H + P
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPF 63
Query: 142 TCSVCKKIFVNKKNLTTHKKIHL 164
C +C + F H KIHL
Sbjct: 64 ACDICGRKFARSDERKRHTKIHL 86
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F + +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PH 141
++C + C ++ L +H H C+IC F + L H I+ H + P
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPF 63
Query: 142 TCSVCKKIFVNKKNLTTHKKIHL 164
C +C + F H KIHL
Sbjct: 64 ACDICGRKFARSDERKRHTKIHL 86
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTT 158
L +H H C+IC F + L H I+ H + P C +C + F
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 159 HKKIHL 164
H KIHL
Sbjct: 81 HTKIHL 86
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F ++ +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTT 158
L +H H C+IC F + L H I+ H + P C +C + F
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 79
Query: 159 HKKIHL 164
H KIHL
Sbjct: 80 HTKIHL 85
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F ++ +H R H Q F C +C ++ +L H H + C
Sbjct: 7 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 66 ICGRKFARSDERKRHT 81
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 29 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG----RKFARSDERKRHTK 82
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTT 158
L +H H C+IC F + L H I+ H + P C +C + F
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 159 HKKIHL 164
H KIHL
Sbjct: 81 HTKIHL 86
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVH 131
IC F +E H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PH 141
++C + C +QK L H H C+IC F LN H I+ H + P
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKPF 63
Query: 142 TCSVCKKIFVNKKNLTTHKKIHL 164
C +C + F H KIHL
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHL 86
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F +H R H + F+CD+C +K+ + + RH K
Sbjct: 30 TGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICG----RKFATLHTRDRHTK 83
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F K H R H Q F C +C +Q L +H H + C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVH 131
IC F + + + H
Sbjct: 67 ICGRKFATLHTRDRH 81
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTT 158
L +H H C+IC F + L H I+ H + P C +C + F
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 159 HKKIHL 164
H KIHL
Sbjct: 81 HTKIHL 86
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 107 HIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTTHKKIHLA 165
H + Y + C F +EL H I+ H Q P C +C + F +LTTH + H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 166 LDRNYQCDTYFYEGNSLAWED 186
++ + CD G A D
Sbjct: 60 -EKPFACDIC---GRKFARSD 76
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 57 PCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCK 116
P C + F ++ +H R H Q F C +C ++ +L H H + C
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 117 ICQLGFLSKNELNVHN 132
IC F +E H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
T F CR+C + F + H R H + F+CD+C +K+ + RH K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG----RKFARSDERKRHTK 83
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 87 CDL--CSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
CD C+ T+ +L H H K Y + C F +EL H K A+P
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 143 CSVCKKIFVNKKNLTTHKKIH 163
C VC + F +L H K H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 89 LCSYTSTQKYY-----LVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPH 141
+C+Y K Y L H +H K Y K C+ F ++L H + +P
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 142 TCSVCKKIFVNKKNLTTHKKIHLA 165
C C++ F +L TH + H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTG 91
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKH 103
F C +C++ F +E K+H R H + + C LC+ T++ L++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH-KKIH 163
C++C F + L H +P+ C +C + F + L H +KIH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQH 136
F C++C+ ++ +L +H H + C +C F ++ L H K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+VC K F ++ NL H+KIH
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTG 37
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 58 CRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKI 117
C +C + F K++ K H R H + C C Y + L KH H + C+I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 118 CQLGFLSKNELNVH 131
C + ++L VH
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 30/86 (34%)
Query: 80 ATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ 139
+ G C++C ++K L H H CK C + LN H +
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLA 165
P C +C N LT H + H
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K F ++ NL TH+KIH
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTG 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 58 CRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHI 108
C +C + F +K +++H R HA Q +F C C T +Y +RHI
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPAT----FYSSPGLTRHI 76
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 114 FCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH 159
C +C F SK H H AQ C C F + LT H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLA 165
C C F ++L+ H +P+ C C K F+ + +L H ++H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 55 KFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKH 103
++ C C + F KH R+ H + + CD C Q+ +L+ H
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLA 165
P CS C K+F +K NL H+KIH
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTG 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ CSVC K F ++++L+ H++IH
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLALDRN 169
+P+ C C K F + NLTTH+ IH R+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKRS 41
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 27/130 (20%)
Query: 61 CSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQL 120
CSQEFD++EQ H +H G +C + SR ++
Sbjct: 9 CSQEFDSQEQLVHHINSEH-IHGERKEFVCHWGGC---------SRELRP---------- 48
Query: 121 GFLSKNELNVHNIKQHCAQPHTCSV--CKKIFVNKKNLTTHKKIHLALDRNYQCDTYFYE 178
F ++ L VH + +PH C+ C+K + +NL TH + H ++ Y C+ +E
Sbjct: 49 -FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCE---HE 103
Query: 179 GNSLAWEDTS 188
G S A+ + S
Sbjct: 104 GCSKAFSNAS 113
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C C K F K NLT H++IH
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K F+ K + TH++IH
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 53 DTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKH-KSRHIKD 110
+ K+PCR C + F E R KHE H + + C C + ++ H KS H +D
Sbjct: 48 EKKYPCRYCEKVFPLAEYRTKHE-IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 51 TSDTKFPCR--LCSQEFDTKEQRKKHERKDHATQGLFSCDL--CSYTSTQKYYLVKHKSR 106
T + FPC+ C + F + +H H + F+CD C T K + KH +R
Sbjct: 38 TGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 107 --HIKDYNVFCKI--CQLGFLSKNELNVHNIKQHCAQPHTCS--VCKKIFVNKKNLTTHK 160
+IK C C F N+L VH P+ C C K F L H+
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 161 KIHLA 165
K+H
Sbjct: 157 KVHAG 161
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ CS C K F K L H+ IH
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 108 IKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTTHKKIH 163
++ Y + C F +EL H I+ H Q P C +C + F +LTTH + H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ CS+C K F K L H++IH
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTG 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C VC+K F + +LT H+++H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P C+ C K F K NL TH++IH
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++C+ C K F K L HK +H
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K F + +LTTH+ IH
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTG 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ CS C K F+ K L H++IH
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C VC K F K +L H+K H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 87 CDLCSYTSTQKYYLVKHKSRHIKDYNVF---CKICQLGFLSKNELNVHNIKQHCA 138
C++C +T QK L H+ +H + C+ C F + + H K H A
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K F+ K +L H++IH
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTG 37
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+PH C+ C K F+ +L H++IH
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTG 37
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K F + NL H+KIH
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K F NLTTH+ IH
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTG 37
>pdb|2YEW|C Chain C, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|F Chain F, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|I Chain I, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|L Chain L, Modeling Barmah Forest Virus Structural Proteins
Length = 421
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 54 TKFPCRLCSQEFD-TKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHK 104
T+ PC+ S + D T+E+ H D QGL S SY+ K +K+K
Sbjct: 146 TRIPCKTYSHQTDLTREEITMHVPPDVPIQGLVSNTGKSYSLDPKTKTIKYK 197
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C VC K F +LT H++IH
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++C+VC K FV +L H ++H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLAL 166
+P+ C+ C K+F +L H++IH +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGV 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
H CS C K F+ N H++IH
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIH 35
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 114 FCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
FC C + + L+ H +P +C C K F ++ + H K+H
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTTHKKI 162
C+IC F + L H I+ H + P C +C + F H+ I
Sbjct: 6 CRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCS 91
F CR+C + F + H R H + F+CD+C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICG 38
>pdb|2H3X|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H3X|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H47|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|F Chain F, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|H Chain H, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2IAA|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
pdb|2IAA|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
Length = 390
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 254 SADFSGDEVKVDGPWSLLNDEDKAKNW 280
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K+F +LT H +IH
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C+K F K NL H++ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++CSVC K F K + TH ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 130 VHNIKQHCAQ-PHTCSV--CKKIFVNKKNLTTHKKIHLALDRNYQCDTYFYEG 179
V++I+ H + P C C KIF +NL HK+ H ++ ++C+ +EG
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG-EKPFKCE---FEG 127
>pdb|2HXC|A Chain A, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2HXC|B Chain B, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2I0R|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
pdb|2I0R|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
Length = 361
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 225 SADFSGDEVKVDGPWSLLNDEDKAKNW 251
>pdb|2I0S|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
pdb|2I0S|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
Length = 360
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 224 SADFSGDEVKVDGPWSLLNDEDKAKNW 250
>pdb|2Q7Q|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine.
pdb|2Q7Q|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine
Length = 361
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 225 SADFSGDEVKVDGPWSLLNDEDKAKNW 251
>pdb|2OJY|A Chain A, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2OJY|B Chain B, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2HKM|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKM|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKR|A Chain A, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of Aromatic
Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
pdb|2HKR|B Chain B, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of Aromatic
Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
Length = 362
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 226 SADFSGDEVKVDGPWSLLNDEDKAKNW 252
>pdb|2AGL|A Chain A, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGL|B Chain B, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGW|A Chain A, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGW|B Chain B, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGX|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGX|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGY|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGY|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGZ|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AGZ|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AH0|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH0|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH1|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2AH1|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2IUP|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUP|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUQ|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUQ|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUR|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUR|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUV|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2IUV|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2OK4|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2OK4|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2I0T|A Chain A, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2I0T|B Chain B, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2OIZ|A Chain A, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OIZ|B Chain B, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OK6|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2OK6|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2HJ4|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJ4|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJB|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
pdb|2HJB|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
Length = 361
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 STDAHDIEIKKEGLWSFLEDENEKRNF 33
S D E+K +G WS L DE++ +N+
Sbjct: 225 SADFSGDEVKVDGPWSLLNDEDKAKNW 251
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ CS C K F+ L H++ H
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K+F +L H+++H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P CS C+K F K NL H++ H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTG 37
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 53 DTKFPCRLCSQEFDTKEQRKKHERK 77
D +F LC QE ++QRK+H R+
Sbjct: 143 DLRFSMALCDQEKTFRQQRKEHIRE 167
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K F K L H++IH
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K F +LTTH+ IH
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++C+ CK+ F + L H+K+H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K+F K L +H+K H
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C C K F++ L H++IH
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTG 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C+ C K F +K L H++IH
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C C+K F+ +L HK++H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 7.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
+ CS C K F+ K L+ H++IH
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIH 35
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 7.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K L +H++ H
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTH 33
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K+F +L H+ IH
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 143 CSVCKKIFVNKKNLTTHKKIHLA 165
C+ CKK F +LT H++IH
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTG 37
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 116 KICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCDTY 175
K C F + + H + H + H C+ C K FV L H+ +H ++ +QC
Sbjct: 11 KGCTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTG-EKPFQCT-- 66
Query: 176 FYEG 179
+EG
Sbjct: 67 -FEG 69
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 55 KFPCRLCSQEFDTKEQRKKHE---RKDHATQ-GLFSCDLCSYTSTQKYYLVKHKSRHIK 109
+FP L EFD KE R++ + H + GLF+ DL ++ +T K + K K IK
Sbjct: 389 RFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDL-AFEATVKKQVQKLKEPSIK 446
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.6 bits (57), Expect = 8.9, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C C K F L+ H+++H
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K+F +L H+ IH
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+P+ C+ C K+F +L H+ IH
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,468,645
Number of Sequences: 62578
Number of extensions: 186701
Number of successful extensions: 772
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 252
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)