RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4683
(196 letters)
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 44.0 bits (103), Expect = 2e-06
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKD-HATQGLFSCDLC---SYTSTQKYYLVKHKSR 106
T +KF C+ CS +DT + H + H D ++ +K L++ + +
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 107 HIKDYNVFCKICQLGFLSKNELNVHNIKQH 136
+ C C F S +L+VH IK
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 29.3 bits (65), Expect = 0.36
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 103 HKSRHIKDYNVFCKICQLGFLSKNELNVH-NIKQH----CAQPHTCSVCKKIFVNKKNLT 157
+ S CK C + + EL VH N H + + + K++L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 158 THKKIHLALDRNYQCD 173
+ A + +C
Sbjct: 70 EMEGKEDA-QKVLKCM 84
Score = 27.0 bits (59), Expect = 2.5
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 124 SKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKI 162
S + ++ A C C + LT H
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE 41
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 40.9 bits (96), Expect = 1e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQ----PHTCSVCKKIFVNKKNLTTHKKIH 163
C+IC K LN H ++H C C K F ++ H+
Sbjct: 10 CEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 37.4 bits (87), Expect = 2e-04
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVF---CKICQLGFLSKNELNVHNIKQHCA-QP 140
C++C +T QK L H+ +H + C+ C F + + H K H A
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 141 HTCSVCKKIF 150
Sbjct: 68 APQESSGPSS 77
Score = 37.0 bits (86), Expect = 3e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGL--FSCDLCSYTSTQKYYLVKHKSRH 107
C +C K H+RK T F C+ C + + H+S+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 37.0 bits (86), Expect = 3e-04
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH--LALDRNYQCD 173
C +C K +L H++ H + C+
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCE 42
Score = 26.6 bits (59), Expect = 1.7
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCS 91
FPC C + F+ + H K H L +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 40.6 bits (96), Expect = 4e-05
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
C C KYYL H +H K + C C + K L H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFE--CPKCGKCYFRKENLLEH---EARNCMNR 62
Query: 143 ------CSVCKKIFVNKKNLTTHKKIH 163
CSVC++ F + L H H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 35.2 bits (82), Expect = 0.003
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHI-----KD 110
C C ++F +K K H RK H + F C C +K L++H++R+ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 111 YNVFCKICQLGFLSKNELNVHNIKQHCAQ-------PHTCSVCKKIFVNKKNLTTHK-KI 162
+ C +CQ F + EL +H P+ CS C + F+ KK+L +H K+
Sbjct: 67 FT--CSVCQETFRRRMELRLH-------MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 163 H 163
H
Sbjct: 118 H 118
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C C K F++K L H + H
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKH 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 7e-05
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 50 VTSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIK 109
V + + CRLC+ + + ++ HER C CS +H+S+ +
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESKC-E 66
Query: 110 DYNVFCKICQLGFLSKNELNVHNIKQH 136
+ C C F S + H ++ H
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.1 bits (77), Expect = 0.006
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 71 RKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNV 130
+ ++ C LC+ + H+ C C L F S
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
Query: 131 HNIKQHCAQPHTCSVCKKIFVNKKNLTTHKK 161
H K + TC C + F + ++ H+
Sbjct: 61 HESK-CEYKKLTCLECMRTFKSSFSIWRHQV 90
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 38.4 bits (90), Expect = 4e-04
Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 14/115 (12%)
Query: 61 CSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH---------IKDY 111
+Q + Q C T + + LV H + Y
Sbjct: 3 SGSSGQPIKQELSCKWI-DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 112 NVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSV--CKKIFVNKKNLTTHKKIH 163
C F +K +L H I+ H + P C C KIF +NL HK+ H
Sbjct: 62 WEECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 37.7 bits (88), Expect = 6e-04
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDH--------ATQGLFSCDLCSYTSTQKYYLVK 102
+ P + C + F T + H +H C + KY LV
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 103 HKSRHI--KDYNVFCKICQLG--FLSKNELNVHNIKQHCAQ-PHTCSV--CKKIFVNKKN 155
H H K + C G F L +H + H + P C C + F N +
Sbjct: 81 HIRVHTGEKPFP--CPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 156 LTTHKKIHLALDRNYQCD 173
H +H + D++
Sbjct: 138 RKKHMHVHTS-DKSGPSS 154
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 37.0 bits (87), Expect = 4e-04
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 87 CDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCS 144
C++C ++K L H H K Y CK C + LN H +P C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 145 VCKKIFVNKKNLTTHKKIH 163
+C N LT H + H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 32.0 bits (74), Expect = 0.027
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
PH C VC K F K L TH + H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH 31
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 36.7 bits (86), Expect = 5e-04
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 115 CKICQLGFLSKNELNVHNIKQH---CAQPHTCSVCKKIFVNKKNLTTH-KKIH 163
C IC F + +H I Q C C + K +L H +K H
Sbjct: 18 CYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 31.7 bits (73), Expect = 0.022
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLA-LDRNYQCD 173
P+ C +C F + H + C
Sbjct: 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.1 bits (85), Expect = 6e-04
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 74 HERKDHATQGLFSCDLCSYTSTQKYYLVKH-KSRH---IKDYNVFCKICQLGFLSKNELN 129
H +++ +G + C C++ + H S H + + + C C + L+
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 130 VHNIKQH 136
HN+K H
Sbjct: 68 EHNLKYH 74
Score = 25.9 bits (56), Expect = 4.2
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ----PHTCSVCKKIFVNKKN 155
++ + CK C N H +H + C C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 156 LTTHKKIHLALDRNYQCD 173
L+ H + + N++
Sbjct: 66 LSEHNLKYHPGEENFKLT 83
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 115 CKICQLGFLSKNELNVHN-IKQHCAQ-PHTCSVCKKIFVNKKNLTTHKKIH 163
CK+C + + H + C C K F K N+T H KI
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGL--FSCDLCSYTSTQKYYLVKHKSRH 107
+ C++CS+ + +H H + + C C T+K + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR-NVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 27.1 bits (61), Expect = 0.77
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+ C VC +++ + N H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTS 33
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 35.5 bits (83), Expect = 0.002
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
F C C T+ Y L+ H+ H + Y C IC F ++ L H +P
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYT--CDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 143 CSVCKKIFVNKKNLTTHKKIH 163
C C K F + L HK +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.4 bits (80), Expect = 0.004
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQH---CAQ 139
+C++C Y+L +HK H K Y+ C +C L F K+ ++ H ++ H +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYS--CPVCGLRFKRKDRMSYH-VRSHDGSVGK 64
Query: 140 PHTCSVCKKIFVNKKNLTTH-KKIH 163
P+ C C K F +L H K++H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.1 bits (74), Expect = 0.024
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C +C KIF + +L HK H
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSH 30
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 33.9 bits (79), Expect = 0.004
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
F C +C + + L H H + Y C+ C F K+++ H +PH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYP--CQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 143 CSVCKKIFVNKKNLTTHKKIH 163
C VC K F NL TH + H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.005
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
H C C + F K +L H++IH
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.006
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
H CS C K F+ N H++IH
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIH 35
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 35.1 bits (82), Expect = 0.006
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 87 CDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ----- 139
C C + +Q +L H+ H K Y C C F ++ L+ H Q
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYK--CPECGKSFSREDNLHTH-------QRTHTG 158
Query: 140 --PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F + L H++ H
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 35.1 bits (82), Expect = 0.007
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ--- 139
+ C C + + K L +H+ H K Y C C F + L H Q
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYK--CPECGKSFSQRANLRAH-------QRTH 100
Query: 140 ----PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F +L H++ H
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 34.0 bits (79), Expect = 0.018
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 87 CDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ----- 139
C C + +Q+ L H+ H K Y C C F L H Q
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAH-------QRTHTG 130
Query: 140 --PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F + NL TH++ H
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 33.6 bits (78), Expect = 0.020
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 18/78 (23%)
Query: 95 TQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-------PHTCSV 145
V + K Y C C F + L H Q P+ C
Sbjct: 4 FGSSSSVAQAALEPGEKPYA--CPECGKSFSRSDHLAEH-------QRTHTGEKPYKCPE 54
Query: 146 CKKIFVNKKNLTTHKKIH 163
C K F +KK+LT H++ H
Sbjct: 55 CGKSFSDKKDLTRHQRTH 72
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.7 bits (78), Expect = 0.007
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
C T T+ +L H H K Y+ C F +EL H K +P
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 143 CSVCKKIFVNKKNLTTHKKIHL 164
C C + F +L H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.007
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P CS C K+F +K NL H+KIH
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIH 35
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 32.9 bits (76), Expect = 0.009
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFVNKKNLTTHKKIH 163
C C SK L +H + HC P C+ C NL+ H K
Sbjct: 12 CSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD 173
P CS C +K L H++IH DR ++C+
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCT-DRPFKCN 41
Score = 29.0 bits (66), Expect = 0.22
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 58 CRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH 107
C CS +K + HER H T F C+ CS+ + Q L KH +
Sbjct: 12 CSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.010
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+VC K F ++ NL H+KIH
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.010
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K + + NL H+++H
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.7 bits (73), Expect = 0.011
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C +C F + + L +H +IH
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.9 bits (73), Expect = 0.012
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P++C+ CK+ F + L H+K+H
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMH 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 33.0 bits (75), Expect = 0.012
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSY--------TSTQKYYLVK 102
+ P + C + F T + H +H + +C + + KY LV
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 103 HKSRH 107
H H
Sbjct: 81 HIRVH 85
Score = 32.6 bits (74), Expect = 0.019
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 107 HIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT---------CSVCKKIFVNKKNLT 157
+ K C F + +EL H +H P C K F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 158 THKKIH 163
H ++H
Sbjct: 80 NHIRVH 85
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C+K F K L H+++H
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F LT H H
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.013
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C VC K F +LT H++IH
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.013
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F ++ NL TH+KIH
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.8 bits (72), Expect = 0.015
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQC 172
C +C KIF + +L HK H ++ Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSG-EKPYSS 43
Score = 26.1 bits (57), Expect = 1.4
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 70 QRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH 107
RK A C++C Y+L +HK H
Sbjct: 4 GSSGRTRKQVA------CEICGKIFRDVYHLNRHKLSH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 31.5 bits (72), Expect = 0.016
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F + +L H++
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSC 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.016
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C+ C K F K L H++ H
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.016
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K + +K NL H+K+H
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (72), Expect = 0.017
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P CS C+K F +K L H++ H
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTH 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.017
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C +C K F + L H +H
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVH 35
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (74), Expect = 0.018
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 99 YLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNL 156
+ H K Y C CQ F K L H +P+ C++C F NL
Sbjct: 4 HHHHHSHMTHSDKPYK--CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 157 TTHKKIH 163
TH +IH
Sbjct: 62 KTHTRIH 68
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.018
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F NLTTH+ IH
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.019
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F K NLT H++IH
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 31.0 bits (71), Expect = 0.020
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C C K F K +LT H++IH
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIH 33
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 31.9 bits (73), Expect = 0.020
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH 159
L+ + ++ Y + C F +EL H +P C +C + F +LTTH
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 160 KKIH 163
+ H
Sbjct: 69 IRTH 72
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.021
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K L H++ H
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.021
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K L H+K H
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.4 bits (78), Expect = 0.022
Identities = 6/49 (12%), Positives = 11/49 (22%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
+ + C VC + + +L H H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 0.60
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 50 VTSDTKFPCRLCSQEFDTKEQRKKHER--KDHATQGLFS 86
+S + C +CS + H H L S
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 31.8 bits (73), Expect = 0.023
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 115 CKICQLG--FLSKNELNVHNIKQHCAQ-PHTCS--VCKKIFVNKKNLTTHKKIHLALDRN 169
C G F ++ LN H QH Q +C C K F KK+L H K+H R+
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD-TRD 68
Query: 170 YQCD 173
Y C+
Sbjct: 69 YICE 72
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.023
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
HTC C K F L H+++H
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVH 35
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 32.1 bits (74), Expect = 0.025
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHT 142
F C +C ++ +L H H K + C IC F +E H P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFA--CDICGRKFARSDERKRH-RDIQHILPIL 60
Query: 143 CSVCKKIFVNKKNLTTHK---KIH 163
+++ +L K
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C +C + F +LTTH + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTH 26
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.026
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F+ K L H++IH
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIH 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.029
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 50 VTSDTKFPCRLCSQEFDTKEQRKKHERKDHAT 81
+ + + + C +C+ F T +H R DH
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.029
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P CS C+K F K NL H++ H
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 30.6 bits (70), Expect = 0.031
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C+ C K F K NL TH++IH
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIH 35
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 30.9 bits (71), Expect = 0.031
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C VC + F +++L H + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.3 bits (59), Expect = 1.6
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 140 PHTCSVCKKIFVNKKNLTTH-KKIH 163
P+ C +C + F + L H +KIH
Sbjct: 30 PYPCGLCNRAFTRRDLLIRHAQKIH 54
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.032
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C C F +L H+ +H
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.034
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C+K F+ +L HK++H
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVH 35
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 31.3 bits (72), Expect = 0.036
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 115 CKICQLGFLSKNELNVHNIKQH-----CAQPHTCSVCKKIFVNKKNLTTHKKIH 163
C C F K L++H K++ CS C K F + + H
Sbjct: 18 CSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 31.0 bits (71), Expect = 0.052
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K+ L H K +
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRY 38
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.2 bits (69), Expect = 0.037
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C FV +L H IH
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIH 34
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.037
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C+ CKK F +LT H++IH
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.037
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS+C K F K L H++IH
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.038
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F + NL H+KIH
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.039
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F +LTTH+ IH
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.039
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F++ L H++IH
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 30.6 bits (70), Expect = 0.039
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K L H++ H
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.041
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F+ +++L TH +H
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.041
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CSVC K F ++++L+ H++IH
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.041
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C+ C K F K L+ H+KIH
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.042
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P++C+VC K FV +L H ++H
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 30.2 bits (69), Expect = 0.046
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F K +L H ++H
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVH 34
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.1 bits (69), Expect = 0.047
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C+K F K NL H++ H
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.049
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C+ C K F + +L H ++H
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.049
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C VC K F +L TH+++H
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.054
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F + L H++IH
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.055
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F+ K +L H++IH
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.056
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H++IH
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.058
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F + L+ H++IH
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.058
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C VC+K F + +LT H+++H
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.060
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F +L H++IH
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.061
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F +K L H + H
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.063
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ CS C K F+ K L+ H++IH
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.064
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ CS C K F K L H++IH
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.065
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
P CS C ++F + L H++ H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.0 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
F C C TQ+ YLV+H+ H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 29.8 bits (68), Expect = 0.069
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F + L H K+H
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLH 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 31.3 bits (72), Expect = 0.069
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C VC K F K +L H KIH
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 27.4 bits (62), Expect = 1.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 95 TQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCSVCKKIFV 151
T K +H S H+ + Y C +C F K+ L H K H P+ C++C K F+
Sbjct: 20 THKSQRDRHMSMHLGLRPYG--CGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFM 76
Query: 152 NKKNLTTHKKIH 163
+ + H+ +
Sbjct: 77 WRDSF--HRHVT 86
Score = 25.9 bits (58), Expect = 4.3
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH--IKDYNVFCKICQLGFLSKNELNVHNIKQH-CAQPH 141
+ C +C K++LV H H IK Y C IC F+ ++ + H C + +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYE--CNICAKRFMWRDSFHRH---VTSCTKSY 92
Query: 142 TCSVCKKIFVNKKNLTT 158
+ ++ ++
Sbjct: 93 EAAKAEQNTTEASGPSS 109
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 29.8 bits (68), Expect = 0.075
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C+ C K F L TH++IH
Sbjct: 12 PFECAECGKSFSISSQLATHQRIH 35
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 31.8 bits (73), Expect = 0.078
Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 37/117 (31%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQG--LFSCDLCSYTS-----TQKYYLVKHKSRHI 108
CSQEFD++EQ H +H F C + +Y LV H RH
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH- 62
Query: 109 KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSV--CKKIFVNKKNLTTHKKIH 163
E +PH C+ C+K + +NL TH + H
Sbjct: 63 ----------------TGE-----------KPHKCTFEGCRKSYSRLENLKTHLRSH 92
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.079
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K+F K L +H+K H
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.5 bits (67), Expect = 0.079
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C+ C K F +LT H+KIH
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIH 35
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 30.7 bits (70), Expect = 0.081
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 65 FDTKEQRKKHERKDHATQGLFSCDL--CSYTSTQKYYLVKHKSRH--IKDYNVFCKICQL 120
+ + R CD C+ T+ +L H H K Y + C
Sbjct: 3 SGSSGPDLEKRRI-------HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 121 GFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
F +EL H K A+P C VC + F +L H K H
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 29.4 bits (67), Expect = 0.081
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K L +H++ H
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTH 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.082
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K+F +L H+ IH
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.090
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F +L H K H
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.091
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +LT H +IH
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIH 35
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 30.5 bits (70), Expect = 0.093
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 85 FSCDL--CSYTSTQKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQ- 139
++C + C +Q L +H H K + C+IC F + L H I+ H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRICMRNFSRSDHLTTH-IRTHTGEK 61
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C +C + F H KIH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.094
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F+ K L H++ H
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.4 bits (67), Expect = 0.096
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C+ C K+F L+ H+KIH
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.098
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C VC K F K +L H+K H
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.100
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K + + +LT H+++H
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F K L+ H++ H
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K + + +L H+++H
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVH 35
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 30.1 bits (69), Expect = 0.11
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C C K F + +L+ H++ H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTH 41
Score = 29.7 bits (68), Expect = 0.12
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 96 QKYYLVKHKSRHI--KDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNK 153
+ + + + Y C C F ++L+ H +P+ C C K F+ +
Sbjct: 2 SSGSSGRSEWQQRERRRYK--CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Query: 154 KNLTTHKKIH 163
+L H ++H
Sbjct: 60 SHLIGHHRVH 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 29.7 bits (68), Expect = 0.11
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H+++H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVH 37
Score = 28.6 bits (65), Expect = 0.26
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H++IH
Sbjct: 42 PYKCLECGKAFSQNSGLINHQRIH 65
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.11
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F K L +H++ H
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.12
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F L +H+++H
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.12
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C C K F L H+++H
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.12
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +L H++IH
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F +K L H + H
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.15
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F +H++ H
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.15
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F + +LTTH+ IH
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.16
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C VC K F +L H +H
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.16
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F + +L H+ H
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATH 35
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
H C+ C K FV L H+ +H
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVH 57
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P+ C C K F NL +H H
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 25.9 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P C+ C K F NL TH +IH
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIH 87
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.17
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F + + T H+++H
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.17
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
PH C C K F L H++IH
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 30.3 bits (67), Expect = 0.18
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 39 EESDKLDDEDNVTSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKY 98
+ES L + ++F C LC F + K+H R T C +C T
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT---KVCPVCKKEFTSTD 114
Query: 99 YLVKH 103
+ H
Sbjct: 115 SALDH 119
Score = 29.9 bits (66), Expect = 0.23
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH 159
C +C + F S L H I+ C VCKK F + + H
Sbjct: 77 CPLCLMPFSSSVSLKQH-IRYT-EHTKVCPVCKKEFTSTDSALDH 119
Score = 27.6 bits (60), Expect = 1.5
Identities = 9/68 (13%), Positives = 23/68 (33%)
Query: 96 QKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKN 155
++Y+ + + + + V I L ++ + C +C F + +
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 156 LTTHKKIH 163
L H +
Sbjct: 90 LKQHIRYT 97
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.19
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F L H++IH
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.20
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F K +L H++ H
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.20
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +L H+ IH
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.21
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
PH C+ C K F+ +L H++IH
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 29.2 bits (65), Expect = 0.22
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 100 LVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTH 159
K + H+ D + C C + F+ ++ L+ + C C+K + L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 160 KKIH 163
+
Sbjct: 59 EGNE 62
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.23
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F +L +H+++H
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.23
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C K F +L +H +IH
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.1 bits (63), Expect = 0.25
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHL 164
P C C + F +L H+K H+
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRHM 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.27
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +L H+ IH
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.27
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +L H+ IH
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.8 bits (61), Expect = 0.29
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++CSVC K F K + TH ++H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.9 bits (63), Expect = 0.32
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H+++H
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.32
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K F L H+++H
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.9 bits (63), Expect = 0.36
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F +L H+++H
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVH 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 27.4 bits (60), Expect = 0.36
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P+ C C++ F + L H +IH
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 29.0 bits (66), Expect = 0.45
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C++ F +L TH + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 28.6 bits (65), Expect = 0.58
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 61 CSQEFDTKEQRKKHERKDHATQGLFSCDL--CSYTSTQKYYLVKHKSRHI--KDYNVFCK 116
C++ + + H RK H + + CD C ++ L +H+ RH K + CK
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ--CK 70
Query: 117 ICQLGFLSKNELNVHNIKQHCAQ-PHTCSV--CKKIFVNKKNLTTHKKIH 163
CQ F + L H + H + P +C C+K F L H +H
Sbjct: 71 TCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.50
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C+ C K+F +L H+++H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 27.3 bits (61), Expect = 0.50
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIHLALDRNYQCDT 174
P C+ C F L+ H++ H + +
Sbjct: 12 PFACTWPGCGWRFSRSDELSRHRRSHSG-VKPSGPSS 47
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 27.8 bits (61), Expect = 0.55
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 115 CKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
C+ C + + L H +P+ C+ C F K NLT H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.4 bits (60), Expect = 0.57
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 87 CDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVH 131
C+ C + L KH H C C F +K L H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 26.2 bits (57), Expect = 1.6
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 55 KFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH 107
K+ C C KKH R H + C C+++ K L KH
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.69
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 128 LNVHNIKQHCAQPHTCSVCKKIFVNKKN--LTTHKKIHLAL---DRNY 170
L++ N+ Q Q + VNK N L K++ ++L +N
Sbjct: 339 LSISNLTQEQVQDY---------VNKTNSHLPAGKQVEISLVNGAKNL 377
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 28.7 bits (65), Expect = 0.80
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 95 TQKYYLVKHKSRH----IKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ-PHTCS--VCK 147
T K + KH +R I Y + C F N+L VH H Q P+ C C
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCD 143
Query: 148 KIFVNKKNLTTHKKIH 163
K F L H+K+H
Sbjct: 144 KRFSLPSRLKRHEKVH 159
Score = 27.6 bits (62), Expect = 2.4
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 95 TQKYYLVKHKSRHI--KDYNVFCK--ICQLGFLSKNELNVHNIKQHC---AQPHTCSV-- 145
T ++L +H H K++ C C L F +K + H + + C
Sbjct: 55 TSLHHLTRHSLTHTGEKNFT--CDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFEN 111
Query: 146 CKKIFVNKKNLTTHKKIH 163
C K F L H+ H
Sbjct: 112 CGKAFKKHNQLKVHQFSH 129
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.81
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P++C VC F K ++ H + H
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSH 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.0 bits (64), Expect = 0.82
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 11 HDIEIKKEGLWSFLEDENEKRNFSSEEDEESDKLDDEDNVTSDTKFPCRLCSQEFDTKEQ 70
DI + + ED ++ + S+E + E + Q D E
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEK------RLQREKSEQVLDNPED 223
Query: 71 RKKHERKDHATQG 83
+ QG
Sbjct: 224 LRGPIHLSVLRQG 236
Score = 27.5 bits (60), Expect = 3.0
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 124 SKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
S ++ +H + +++ N ++L +
Sbjct: 192 SMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 0.90
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C C F +L H + H
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSH 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 0.99
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 58 CRLCSQEFDTKEQR------KKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDY 111
C++CS ++ Q+ +KH K + + +K+ + +D
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGE--DSVPAKKFKAAPAEISDGEDR 92
Query: 112 NVFCKICQLGFLSKNELNVH 131
+ C +C + F S H
Sbjct: 93 SKCCPVCNMTFSSPVVAESH 112
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 26.8 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 140 PHTCSVCKKIFVNKKNLTTH-KKIH 163
P+ C C K F +L H K++H
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVH 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.7 bits (57), Expect = 1.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C VC + F +++L H + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 23.8 bits (52), Expect = 6.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 55 KFPCRLCSQEFDTKEQRKKHER 76
F C +C++ F +E K+H R
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR 23
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 1.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHLA 165
+ H C C +IF +L H+ +H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMG 37
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR
{Escherichia coli} SCOP: d.68.1.1
Length = 100
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
P TD D ++K L FLE+ +
Sbjct: 20 PGTDEGDYQVKLRSLIRFLEEGD 42
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A
{Thermus thermophilus} SCOP: d.68.1.1
Length = 89
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 6 PSTDAHDIEIKKEGLWSFLED 26
D HD + K + FL++
Sbjct: 9 VKIDEHDYQTKLGHIKRFLQE 29
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 2.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 136 HCAQPHTCSVCKKIFVNKKNLTTHKKIHLA 165
H + + CS C+ F +K+L H+K H A
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTHAA 37
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.4 bits (57), Expect = 2.6
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 55 KFPCRLCSQEFDTKEQRKKHERKDHATQ 82
C+ C ++F +K H +H+ +
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 25.8 bits (57), Expect = 3.0
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIHLALDRNYQCD 173
H CS C K + +L H + H ++ + C
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTH-TGEKPFSCS 51
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 3.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 55 KFPCRLCSQEFDTKEQRKKHERKDHATQ 82
F C C ++ + K H +H +
Sbjct: 62 MFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 3.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
+ C CSY S K L H +H
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKH 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.7 bits (53), Expect = 3.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+P C +C F K N H K+H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain,
ribosome binding factor; 2.00A {Geobacillus
stearothermophilus} SCOP: d.68.1.1
Length = 94
Score = 26.0 bits (58), Expect = 4.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
P+ + HD K FLE +
Sbjct: 14 PTIEEHDFNTKLRNARKFLEKGD 36
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 4.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
+ C +C++ FV K L+ H+++H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 5.0
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 152 NKKNLTTHKKI--HLALDRNYQC--------DTYFYE--GNSLAWEDTSLEITLLKK 196
N+ L H+ I H + + + D YFY G+ L + +TL +
Sbjct: 441 NEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 26.8 bits (59), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 143 CSVCKKIFVNKKNLTTHKKI--HLALDRNYQ 171
C+ KK F N + T+ I HL + +
Sbjct: 23 CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKE 53
>2crq_A Mitochondrial translational initiation factor 3; ribosome,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 112
Score = 25.8 bits (57), Expect = 5.8
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
+ HD++ K + + ++E +
Sbjct: 22 SNIGQHDLDTKSKQIQQWIEKKY 44
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 26.4 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 143 CSVCKKIFVNKKNLTTHKKI--HLALDRNYQ 171
C+ CKK F N KN T+ I HL L +
Sbjct: 28 CNSCKKWFCNTKNGTSSSHIVNHLVLSHHNV 58
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target;
HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1
PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A*
1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Length = 192
Score = 26.2 bits (58), Expect = 7.0
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 9/45 (20%)
Query: 146 CKKIFVNKKNLTTHKKIHLALDRNYQCDTYFYEGNSLAWEDTSLE 190
+ +T +I + + DT+ + +W
Sbjct: 127 VSHLL-----IT---EIEHPSPESIEMDTFL-KFPLESWTKQPKS 162
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 26.2 bits (57), Expect = 7.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 170 YQCDTYFYEGNSLAWEDTSLEIT 192
C+ GN ++W + S
Sbjct: 182 ASCNGIRPRGNVISWMEDSFVAD 204
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (51), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
+ C+ C+K F K LT H++IH
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIH 35
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 25.5 bits (55), Expect = 8.5
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 43 KLDDEDNVTSDTKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVK 102
+ D+ C C Q+ + + K H + + C C KYY+
Sbjct: 2 AMADKRGDGLHGIVSCTACGQQVNHFQ---KDSIYRHPSLQVLICKNCF-----KYYMSD 53
Query: 103 HKSRHIKDYNVFCKICQLG 121
SR + C+ C G
Sbjct: 54 DISRDSDGMDEQCRWCAEG 72
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 24.7 bits (53), Expect = 8.7
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 50 VTSDTKFPCRLCSQEFDTKEQRKKHERKDHATQ 82
T+++ FPCR+C++ F R+ + +
Sbjct: 24 WTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAA 56
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 26.1 bits (58), Expect = 9.1
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 13 IEIKKEGLWSFLEDENEKRNFSSEEDEESDKLDDEDNVTSDTKFPCRLCSQEFD 66
I + G + E + E+ + D + + +FD
Sbjct: 42 FAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFD 95
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 23.7 bits (52), Expect = 9.9
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 140 PHTCSVCKKIFVNKKNLTTH-KKIH 163
P+ C C K F+ +L H + H
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYH 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.399
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,781,807
Number of extensions: 144533
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 286
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)