RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4683
(196 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.0 bits (85), Expect = 7e-05
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 118 CQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIH 163
C F K++ + H +P+ C VC K F K +L H KIH
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 29.7 bits (66), Expect = 0.035
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVH 131
+ C C + T K +H S H+ C +C F K+ L H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 26.2 bits (57), Expect = 0.58
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 61 CSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH 107
C + F K QR +H + + C +C K++LV H H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH 53
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 32.2 bits (74), Expect = 0.003
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H+++H
Sbjct: 7 PYGCVECGKAFSRSSILVQHQRVH 30
Score = 24.1 bits (53), Expect = 2.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
+ C C ++ LV+H+ H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.8 bits (73), Expect = 0.003
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C +C + F +LTTH + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTH 26
Score = 22.2 bits (48), Expect = 9.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
F C +C ++ +L H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 31.1 bits (71), Expect = 0.006
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C VC + F +++L H + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 23.0 bits (50), Expect = 5.1
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
F C++C+ ++ +L +H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 30.9 bits (70), Expect = 0.009
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHL 164
P C C + F +L H+K H+
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 23.5 bits (51), Expect = 3.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHI 108
F C C + ++ +L H+ RH+
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHM 35
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.013
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C C K F L H++IH
Sbjct: 2 PYKCLECGKAFSQNSGLINHQRIH 25
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.0 bits (68), Expect = 0.014
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ CS C K F K+ L H K +
Sbjct: 8 PYACSHCDKTFRQKQLLDMHFKRY 31
Score = 23.1 bits (50), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
++C C T QK L H R+
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRY 31
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 29.6 bits (67), Expect = 0.018
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
C C K F+ +L+ H K H
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTH 25
Score = 23.8 bits (52), Expect = 2.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
F+C C + +L KH H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.0 bits (68), Expect = 0.019
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD 173
P+ C C K F +L H K +R ++C
Sbjct: 5 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 23.4 bits (51), Expect = 4.0
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDL 89
+ C+ C + F + H ++ H ++ C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 22.3 bits (48), Expect = 9.1
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
+ C C ++ +L H +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQV 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 28.6 bits (64), Expect = 0.048
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P C +C F K N H K+H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
Score = 22.8 bits (49), Expect = 7.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
F C +C T K +H H
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 26.9 bits (60), Expect = 0.16
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
PH C+ C+K + +NL TH + H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSH 27
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.0 bits (59), Expect = 0.19
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
PH C VC K F K L TH + H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.22
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
P+ C +C F + H
Sbjct: 8 PYECYICHARFTQSGTMKMHILQK 31
Score = 25.7 bits (57), Expect = 0.64
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRH 107
+ C +C TQ + H +
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.5 bits (59), Expect = 0.22
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P+ C V C + F +LT H +IH
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIH 27
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.7 bits (59), Expect = 0.23
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIH 163
+ C C K F + +L+ H++ H
Sbjct: 12 RYKCDECGKSFSHSSDLSKHRRTH 35
Score = 23.2 bits (50), Expect = 4.2
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 73 KHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRH 107
+ E + + + CD C + + L KH+ H
Sbjct: 2 RSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 26.5 bits (59), Expect = 0.24
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P C+ C K F L HK+ H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.2 bits (58), Expect = 0.35
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 142 TCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD 173
C K F KK+L H K+H R+Y C+
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSD-TRDYICE 35
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.1 bits (58), Expect = 0.36
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P++C C K FV +L HKK H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 26.5 bits (58), Expect = 0.38
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 56 FPCRLCSQEFDTKEQRKKHERKDHATQGL 84
PC LC + F + ++HE + H L
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQ-HGVTSL 34
Score = 24.2 bits (52), Expect = 3.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 GLFSCDLCSYTSTQKYYLVKHKSRH 107
G+ C LC T L +H+++H
Sbjct: 5 GILPCGLCGKVFTDANRLRQHEAQH 29
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 28.6 bits (64), Expect = 0.45
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 73 KHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVH 131
K + D ++ ++ D + ST K + +KD +F + FL ++ VH
Sbjct: 87 KPTQPDTSSNRFYTLDSKMWNSTSKGWWW-KLPDALKDMGIFGENMFYHFLGRSGYTVH 144
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.8 bits (57), Expect = 0.49
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
+TCS CK+ F + + L H +H
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVH 28
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.4 bits (56), Expect = 0.63
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P+ C C K F NL +H H
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 1.2
Identities = 16/132 (12%), Positives = 33/132 (25%)
Query: 54 TKFPCRLCSQEFDTKEQRKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNV 113
T F E + + S T + +
Sbjct: 16 TALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 75
Query: 114 FCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD 173
IC + +V + Q + + K +L T + L + Q
Sbjct: 76 AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP 135
Query: 174 TYFYEGNSLAWE 185
+ +G ++A +
Sbjct: 136 VSYDQGANMAKQ 147
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 25.1 bits (54), Expect = 1.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 50 VTSDTKFPCRLCSQEFDTKEQRKKHER 76
V + + CRLC+ + + ++ HER
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHER 37
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 26.0 bits (57), Expect = 1.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 51 TSDTKFPCRLCSQEFDTKEQRKKHERKDHATQ 82
T+++ FPCR+C++ F R+ + +
Sbjct: 25 TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAA 56
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 1.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 141 HTCSVCKKIFVNKKNLTTHKK 161
H C C + F++ NL TH +
Sbjct: 16 HRCLACARYFIDSTNLKTHFR 36
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.3 bits (53), Expect = 1.7
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 140 PHTCSV--CKKIFVNKKNLTTHKKIH 163
P C+ C K F NL TH +IH
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIH 27
>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation
initiation factor IF-3 [Thermus aquaticus Y51MC23]
gi|218243207|gb|EED09738.1| translation initiation
factor IF-3 [Thermus aquaticus Y51MC23] E=2e-35
s/c=1.74 id=82% cov=101%
Length = 86
Score = 25.5 bits (56), Expect = 2.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
D HD + K + FLE+ +
Sbjct: 9 VKIDDHDYQTKLNHIKRFLEEGH 31
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 2.1
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 85 FSCDLCSYTSTQKYYLVKHKSRHIKD 110
F C +C Y S L H H D
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.9 bits (51), Expect = 2.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
+ C +C++ FV K L+ H+++H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 25.8 bits (56), Expect = 2.4
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 4/101 (3%)
Query: 91 SYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIF 150
++ S + + + F + T V
Sbjct: 47 TFESMRDDLPGSAQIVMSRSERSFSVD---TAHRAASVEEAVDIAASLDAETAYVIGGAA 103
Query: 151 VNKKNLTTHKKIHLA-LDRNYQCDTYFYEGNSLAWEDTSLE 190
+ ++ L+ + Y+ DTY+ E ++ WE +
Sbjct: 104 IYALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAET 144
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 26.0 bits (56), Expect = 2.7
Identities = 18/178 (10%), Positives = 44/178 (24%), Gaps = 12/178 (6%)
Query: 21 WSFL-EDENEKRNFSSEEDEESDKLDDEDNVTSDTKFPCRLCSQEFDTKEQRKKHERKDH 79
+SF+ ++ + + L E FP + + + R +
Sbjct: 39 YSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFE 98
Query: 80 ATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQ 139
+ + V + F L L ++
Sbjct: 99 VGRVFREREETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRVEAQAFP 158
Query: 140 PHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCD-TYFYEGNSLAWEDTSLEITLLKK 196
V ++ V + + +H + + + + +E L + L K
Sbjct: 159 FLHPGVSGRVLVEGEEVGFLGALHPEIAQELELPPVHLFE----------LRLPLPDK 206
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 23.5 bits (50), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKI 162
+ C C K F K N+T H KI
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKI 23
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.2 bits (50), Expect = 3.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIHL 164
+P C +C + F H KIHL
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIHL 27
Score = 22.1 bits (47), Expect = 8.9
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 56 FPCRLCSQEFDTKEQRKKHER 76
F C +C ++F ++RK+H +
Sbjct: 4 FACDICGRKFARSDERKRHTK 24
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 25.7 bits (55), Expect = 3.5
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 4/134 (2%)
Query: 54 TKFPCRLCSQEFDTKEQRKKHE--RKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDY 111
T + F + + G T+ Q+ Y +
Sbjct: 23 TCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 82
Query: 112 NVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQ 171
+ + NV + + +V + + +L K L+ +
Sbjct: 83 VFLICFSVVNP--ASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKE 140
Query: 172 CDTYFYEGNSLAWE 185
+G LA E
Sbjct: 141 KPICVEQGQKLAKE 154
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 88
Score = 24.7 bits (54), Expect = 3.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
P+ + HD K FLE +
Sbjct: 10 PTIEEHDFNTKLRNARKFLEKGD 32
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 25.6 bits (55), Expect = 3.6
Identities = 14/125 (11%), Positives = 27/125 (21%), Gaps = 17/125 (13%)
Query: 71 RKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSK----N 126
RK E + L T + L + + + N
Sbjct: 59 RKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQIN 118
Query: 127 ELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCDTYF-YEGNSLAWE 185
+ V Q +I + ++ CD +F + W
Sbjct: 119 RIFVIGGAQLYKAAMDHPKLDRIMATI------------IYKDIHCDVFFPLKFRDKEWS 166
Query: 186 DTSLE 190
+
Sbjct: 167 SVWKK 171
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor
protein TCTP (histamine-releasing factor) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 25.4 bits (56), Expect = 3.7
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 34 SSEEDEESDKLDDEDNVTSDTKFPCRLCSQEFDTKEQRKKH 74
+S E E + + D L F KE KK+
Sbjct: 52 ASAEGPEGEGTESTVITGVDIVMNHHLQETSFT-KEAYKKY 91
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 354
Score = 25.9 bits (56), Expect = 3.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 91 SYTSTQKYYLVKHKSRHIK 109
++ +Y + H S+ I
Sbjct: 333 TFYKQPMFYHLGHFSKFIP 351
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase,
catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Length = 277
Score = 25.8 bits (56), Expect = 4.2
Identities = 2/19 (10%), Positives = 10/19 (52%)
Query: 91 SYTSTQKYYLVKHKSRHIK 109
+++ Y++ +R ++
Sbjct: 258 DGKVSKRGYVMSQYARFVR 276
>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 91
Score = 24.7 bits (54), Expect = 4.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 6 PSTDAHDIEIKKEGLWSFLEDEN 28
P TD D ++K L FLE+ +
Sbjct: 11 PGTDEGDYQVKLRSLIRFLEEGD 33
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.3 bits (50), Expect = 4.3
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 139 QPHTCSV--CKKIFVNKKNLTTHKKIH 163
+P C+ C + F N+ +L HK H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 32
Score = 23.3 bits (50), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 61 CSQEFDTKEQRKKHERKDH 79
CSQEFD++EQ H +H
Sbjct: 9 CSQEFDSQEQLVHHINSEH 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.0 bits (49), Expect = 4.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 141 HTCSVCKKIFVNKKNLTTHKKIH 163
H C+ C K FV L H+ +H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 23.6 bits (50), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 139 QPHTCSVCKKIFVNKKNLTTH 159
QP TC +C + +NL H
Sbjct: 23 QPATCPICYAVIRQSRNLRRH 43
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 25.1 bits (55), Expect = 5.4
Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 1 MQEKIPSTDAHDIEIKKEGLWSFLEDENEKRNFSSEEDEESDKLDDEDNVTSDTKFPCRL 60
++ D +I + + +++ +SEE + + D +L
Sbjct: 20 QEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGM--GADVEQVIDIVDSFQL 77
Query: 61 CSQEFDTKEQRKKHERK 77
S K++ + +
Sbjct: 78 TSTSLS-KKEYSVYIKN 93
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.5 bits (47), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 140 PHTCSVCKKIFVNKKNLTTH 159
P+ CS C + F+ KK+L +H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSH 21
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 24.4 bits (52), Expect = 7.8
Identities = 8/106 (7%), Positives = 22/106 (20%), Gaps = 12/106 (11%)
Query: 71 RKKHERKDHATQGLFSCDLCSYTSTQKYYLVKHKSRHIKDYNVFCKICQLGFLSKNELNV 130
RK E + L + + + ++ H +
Sbjct: 56 RKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGA 115
Query: 131 HNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLALDRNYQCDTYF 176
+ + + + I + + DT+
Sbjct: 116 EIYNELINNSL----VSHLLITE--------IEHPSPESIEMDTFL 149
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 24.3 bits (52), Expect = 9.0
Identities = 7/89 (7%), Positives = 19/89 (21%), Gaps = 1/89 (1%)
Query: 103 HKSRHIKDYNVFCKICQLGFLSKNELNVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKI 162
R G + +++ + + +
Sbjct: 54 LPERTNVVLTHQEDYQAQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTL 113
Query: 163 HLA-LDRNYQCDTYFYEGNSLAWEDTSLE 190
+ L +++ DT N + S
Sbjct: 114 LVTRLAGSFEGDTKMIPLNWDDFTKVSSR 142
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 24.3 bits (52), Expect = 9.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 129 NVHNIKQHCAQPHTCSVCKKIFVNKKNLTTHKKIHLA-LDRNYQCDTYFYEGNSLAWEDT 187
+V C V V ++ L +K++L +D + DT+F + WE
Sbjct: 77 SVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESV 136
Query: 188 SLE 190
E
Sbjct: 137 FSE 139
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.4 bits (47), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 139 QPHTCSVCKKIFVNKKNLTTHKKIH 163
Q TCSVC++ F + L H H
Sbjct: 3 QVFTCSVCQETFRRRMELRLHMVSH 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.399
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,038
Number of extensions: 32247
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 101
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)