Query psy4684
Match_columns 237
No_of_seqs 181 out of 1603
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.6 5.8E-18 2E-22 146.0 -2.8 115 51-170 94-237 (367)
2 2xc8_A Gene 22 product; siphov 11.0 85 0.0029 21.6 1.0 16 158-173 100-115 (146)
3 2e11_A Hydrolase; dimethylarse 4.2 3.1E+02 0.01 21.4 1.3 15 154-168 33-47 (266)
4 3h1g_A Chemotaxis protein CHEY 3.7 8.5E+02 0.029 15.6 3.3 14 83-96 82-95 (129)
5 1dbw_A Transcriptional regulat 3.7 9.1E+02 0.031 15.2 3.5 10 84-93 77-86 (126)
6 3iv4_A Putative oxidoreductase 3.6 6.8E+02 0.023 17.1 2.6 27 211-237 63-89 (112)
7 1xg8_A Hypothetical protein SA 3.5 1.1E+03 0.038 16.1 3.5 34 202-235 50-85 (111)
8 2r25_B Osmosensing histidine p 3.5 1E+03 0.034 15.4 3.5 30 82-111 81-110 (133)
9 3gl9_A Response regulator; bet 3.4 9.6E+02 0.033 15.2 3.3 10 84-93 78-87 (122)
10 2w1v_A Nitrilase-2, nitrilase 3.4 3.8E+02 0.013 21.0 1.2 13 155-167 34-46 (276)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.64 E-value=5.8e-18 Score=145.98 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhcceEEEEEcC-------ccCCCCCCCeEEecccccccchhhHhhcC---------CceEEEeccC
Q psy4684 51 VKHACRILMRCVFAVMGFHWVKIKG-------RQASCKEAPVISVAPHSSFSDALPVICIG---------APSVVARGET 114 (237)
Q Consensus 51 ~~~~~~~~~r~~~~~~g~~~v~v~g-------~~~~~~~~p~iivaNH~S~~D~~~l~~~~---------~~~fv~K~~l 114 (237)
++.+.+.+.|.++...|. +|.| .|++++++++|++|||||++|++++.... ...||||+++
T Consensus 94 ~y~~~~~~ir~li~~~~s---~V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL 170 (367)
T 1iuq_A 94 YYIFGQNYIRPLIDFGNS---FVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRV 170 (367)
T ss_dssp HHHHHHHHHGGGBCGGGC---EEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHH
T ss_pred HHHHHHHHHHHHHhhcCC---EeecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhh
Confidence 456677777777776654 4888 67777889999999999999999987553 5799999999
Q ss_pred CCcchh---hhhhhhceeEEe----e------chhhhhcCceEEeeecccccCCCCeEEEeeCcccccc
Q psy4684 115 ASLPFV---KRIIVKLWICKL----G------RAAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLDA 170 (237)
Q Consensus 115 ~~~p~~---g~~~~~~g~i~v----d------R~~~~~~~~~~~~~~~~~~~~~~~~l~iFPEGT~~~g 170 (237)
.+.|++ +.. +.++|++. | |++.+... +...+..+.....|.+++|||||||+.+
T Consensus 171 ~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~r~n~-ksl~~~~~~Lk~GG~sI~IFPEGTRsR~ 237 (367)
T 1iuq_A 171 LADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKRKANT-RSLKEMALLLRGGSQLIWIAPSGGRDRP 237 (367)
T ss_dssp HHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHHHHHH-HHHHHHHHHHHHCCCEEEECTTCSCCCB
T ss_pred hcCccccchhhh-hheeeEEecccCCCcchhhhhhhHHHH-HHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence 977776 444 44678875 5 65543221 1222222222334779999999999974
No 2
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=10.98 E-value=85 Score=21.63 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.2
Q ss_pred eEEEeeCcccccccee
Q psy4684 158 ILVIAPHSTFLDAGIV 173 (237)
Q Consensus 158 ~l~iFPEGT~~~g~~~ 173 (237)
++.+||.|||.....+
T Consensus 100 svtvfpngtregtifl 115 (146)
T 2xc8_A 100 SVTVFPNGTREGTIFL 115 (146)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred EEEEcCCCccceeEEE
Confidence 5788999998765555
No 3
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=4.21 E-value=3.1e+02 Score=21.40 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=11.1
Q ss_pred CCCCeEEEeeCcccc
Q psy4684 154 QEAPILVIAPHSTFL 168 (237)
Q Consensus 154 ~~~~~l~iFPEGT~~ 168 (237)
.++..+++|||...+
T Consensus 33 ~~gadlvv~PE~~~~ 47 (266)
T 2e11_A 33 AGQSDLVILPETFTS 47 (266)
T ss_dssp TTTCSEEECCTTTTT
T ss_pred cCCCCEEECCCCccc
Confidence 356679999997653
No 4
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=3.71 E-value=8.5e+02 Score=15.59 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=6.6
Q ss_pred CCeEEecccccccc
Q psy4684 83 APVISVAPHSSFSD 96 (237)
Q Consensus 83 ~p~iivaNH~S~~D 96 (237)
-|+++++.|.+.-+
T Consensus 82 ~pii~~s~~~~~~~ 95 (129)
T 3h1g_A 82 IPIIMITAEGGKAE 95 (129)
T ss_dssp CCEEEEESCCSHHH
T ss_pred CeEEEEeCCCChHH
Confidence 34555555544433
No 5
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=3.70 E-value=9.1e+02 Score=15.23 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.3
Q ss_pred CeEEeccccc
Q psy4684 84 PVISVAPHSS 93 (237)
Q Consensus 84 p~iivaNH~S 93 (237)
|++++++|.+
T Consensus 77 ~ii~~s~~~~ 86 (126)
T 1dbw_A 77 PSIVITGHGD 86 (126)
T ss_dssp CEEEEECTTC
T ss_pred CEEEEECCCC
Confidence 4444444433
No 6
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=3.64 E-value=6.8e+02 Score=17.12 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCceeccC
Q psy4684 211 NSRQKTIQEIIDRAKSEQDWPQFSSLQ 237 (237)
Q Consensus 211 ~~~~~~~~~~~~r~~~~~~~p~~~~~~ 237 (237)
.+.+....+++++..=.+..||+++|+
T Consensus 63 de~r~~Sn~IA~~~~V~h~sPq~il~k 89 (112)
T 3iv4_A 63 QQERDLSDYIAKKTNVKHESPQAFYFV 89 (112)
T ss_dssp GGGHHHHHHHHHHHTCCCCSSEEEEEE
T ss_pred ecCchhhHHHHHHhCCccCCCeEEEEE
Confidence 344445567788777676689999873
No 7
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=3.51 E-value=1.1e+03 Score=16.14 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=19.9
Q ss_pred ceeeeCCCchhh-HHHHHHHHHHHhcCCC-CCceec
Q psy4684 202 PVYVWRDDPNSR-QKTIQEIIDRAKSEQD-WPQFSS 235 (237)
Q Consensus 202 ~i~v~~~~~~~~-~~~~~~~~~r~~~~~~-~p~~~~ 235 (237)
--|++-.+|.+. .+.-+++++|+.++.- +|-++|
T Consensus 50 ~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~i 85 (111)
T 1xg8_A 50 YTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM 85 (111)
T ss_dssp EEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE
T ss_pred EEEEeccCCccchhHHHHHHHHHHhhccccceEEEE
Confidence 356665544322 2456789999998755 565543
No 8
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=3.46 E-value=1e+03 Score=15.38 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=17.4
Q ss_pred CCCeEEecccccccchhhHhhcCCceEEEe
Q psy4684 82 EAPVISVAPHSSFSDALPVICIGAPSVVAR 111 (237)
Q Consensus 82 ~~p~iivaNH~S~~D~~~l~~~~~~~fv~K 111 (237)
..|+|+++.|.+.-+..-....+...|+.|
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 110 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSK 110 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 457777777766544433333445567766
No 9
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=3.45 E-value=9.6e+02 Score=15.17 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.0
Q ss_pred CeEEeccccc
Q psy4684 84 PVISVAPHSS 93 (237)
Q Consensus 84 p~iivaNH~S 93 (237)
|+++++.+.+
T Consensus 78 pii~~s~~~~ 87 (122)
T 3gl9_A 78 PVIVLTAKGG 87 (122)
T ss_dssp CEEEEESCCS
T ss_pred CEEEEecCCc
Confidence 3444444333
No 10
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=3.39 E-value=3.8e+02 Score=20.97 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.3
Q ss_pred CCCeEEEeeCccc
Q psy4684 155 EAPILVIAPHSTF 167 (237)
Q Consensus 155 ~~~~l~iFPEGT~ 167 (237)
++.-+++|||...
T Consensus 34 ~gadlvv~PE~~~ 46 (276)
T 2w1v_A 34 QGANIVSLPECFN 46 (276)
T ss_dssp TTCSEEECCTTTT
T ss_pred CCCCEEEcCCCcc
Confidence 4567999999765
Done!