RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4684
         (237 letters)



>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           LPCAT1-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
           glycerol-3-phosphate acyltransferase 3 (GPAT3), and
           similar sequences.
          Length = 211

 Score = 83.8 bits (208), Expect = 7e-20
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 134 RAAYRAGGMQ-ITSIGVQASRQEAPILVIAPHSTFLDAGIVYVTDFPSIIVRRESGLNPW 192
           R    A G   I   G     +   I+V A H++F+D  I++   FPSI+ ++E G  P+
Sbjct: 2   RVLLFAFGFYVIKVHGKPDPPEAPRIIV-ANHTSFIDPLILFSDLFPSIVAKKELGKLPF 60

Query: 193 LGKLINYTQPVYVWRDDPNSRQKTIQEIIDRAKSEQDWPQ 232
           +G ++     ++V R +P  R+K ++EI +RA    +WP 
Sbjct: 61  IGTILRALGCIFVDRSEPKDRKKVVEEIKERATDP-NWPP 99



 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 59  MRCVFAVMGFHWVKIKGRQASCKEAPVISVAPHSSFSDALPVICIGAPSVVARGETASLP 118
            R +    GF+ +K+ G+    +   +I VA H+SF D L +     PS+VA+ E   LP
Sbjct: 1   ARVLLFAFGFYVIKVHGKPDPPEAPRII-VANHTSFIDPLILFSDLFPSIVAKKELGKLP 59

Query: 119 FVKRII 124
           F+  I+
Sbjct: 60  FIGTIL 65


>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis:
           AGPAT-like.  Lysophospholipid acyltransferase (LPLAT)
           superfamily member: acyltransferases of de novo and
           remodeling pathways of glycerophospholipid biosynthesis
           which catalyze the incorporation of an acyl group from
           either acylCoAs or acyl-acyl carrier proteins (acylACPs)
           into acceptors such as glycerol 3-phosphate,
           dihydroxyacetone phosphate or lyso-phosphatidic acid.
           Included in this subgroup are such LPLATs as
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), Tafazzin (product of Barth syndrome gene), and
           similar proteins.
          Length = 184

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 134 RAAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLDAGIVYVTDFPSI--IVRRESGLNP 191
           R   R  G+++   G++    + P++++A H ++LD  ++       I  + ++E    P
Sbjct: 2   RLLLRLLGVRVRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIP 61

Query: 192 WLGKLINYTQPVYVWRDDPNSRQKTIQEIIDRAK 225
           +LG L+     + + R +  S ++ ++E I+  K
Sbjct: 62  FLGWLLRLLGAIPIDRGNGRSAREALREAIEALK 95



 Score = 31.5 bits (72), Expect = 0.20
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 59  MRCVFAVMGFHWVKIKGRQASCKEAPVISVAPHSSFSD--ALPVICIGAPSVVARGETAS 116
           +R +  ++G   V+++G +    + PVI VA H S+ D   L          VA+ E   
Sbjct: 1   LRLLLRLLGVR-VRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFK 59

Query: 117 LPFVKRII 124
           +PF+  ++
Sbjct: 60  IPFLGWLL 67


>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Lipid metabolism].
          Length = 255

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 115 ASLPFVKRIIVKLWICKLGRAAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLD----A 170
            +L  ++R +++ W+  L        G+++   G++   +  P LV+A H +FLD    +
Sbjct: 23  IALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENLPKGGPALVVANHQSFLDPLLLS 82

Query: 171 GIVYVTDFPSIIVRRESGLNPWLGKLINYTQPVYVWRDDPNSRQKTIQEIIDRAKSEQDW 230
             +        + ++E    P LG L+     + V R++P+    T++  + R K+    
Sbjct: 83  LALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRENPDDE--TLRAAVARLKAGGRS 140



 Score = 32.2 bits (73), Expect = 0.19
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 15  LIATLLVIAWCLACLGLVGLSDEELRKIPITGWRKIVKHACRILMRCVFAVMGFHWVKIK 74
           L   LL+I   L  L  + L+   L ++     R+ ++    +L+           V+++
Sbjct: 1   LRLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLR-----VEVE 55

Query: 75  GRQASCKEAPVISVAPHSSFSDALPVICI----GAPSVVARGETASLPFVKRIIVKLWIC 130
           G +   K  P + VA H SF D L +       G    VA+ E   +P +  ++  L   
Sbjct: 56  GLENLPKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAI 115

Query: 131 KLGRAAYRAGGMQITSIGVQASRQEAPILVIAPHST 166
            + R        +     V   +     LVI P  T
Sbjct: 116 PVDRENPDD---ETLRAAVARLKAGGRSLVIFPEGT 148


>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
           glycerophospholipid biosynthesis.  Lysophospholipid
           acyltransferase (LPLAT) superfamily members are
           acyltransferases of de novo and remodeling pathways of
           glycerophospholipid biosynthesis. These proteins
           catalyze the incorporation of an acyl group from either
           acylCoAs or acyl-acyl carrier proteins (acylACPs) into
           acceptors such as glycerol 3-phosphate, dihydroxyacetone
           phosphate or lyso-phosphatidic acid. Included in this
           superfamily are LPLATs such as glycerol-3-phosphate
           1-acyltransferase (GPAT, PlsB),
           1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
           PlsC), lysophosphatidylcholine acyltransferase 1
           (LPCAT-1), lysophosphatidylethanolamine acyltransferase
           (LPEAT, also known as, MBOAT2, membrane-bound
           O-acyltransferase domain-containing protein 2), lipid A
           biosynthesis lauroyl/myristoyl acyltransferase,
           2-acylglycerol O-acyltransferase (MGAT),
           dihydroxyacetone phosphate acyltransferase (DHAPAT, also
           known as 1 glycerol-3-phosphate O-acyltransferase 1) and
           Tafazzin (the protein product of the Barth syndrome
           (TAZ) gene).
          Length = 187

 Score = 35.5 bits (82), Expect = 0.013
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 63  FAVMGFHWVKIKGRQASCKEAPVISVAPHSSFSDALPVICI 103
               GF  +++KG        PV+ V+ HSS+ D L +  +
Sbjct: 6   LNFFGFVRLEVKGPPPPPGGGPVLFVSNHSSWWDGLILFLL 46



 Score = 30.8 bits (70), Expect = 0.34
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 147 IGVQASRQEAPILVIAPHSTFLDAGIVYVTDF------PSIIVRRESGLN-PWLGKLINY 199
            G        P+L ++ HS++ D  I+++            ++  E     P+  +L   
Sbjct: 17  KGPPPPPGGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPFFTRL--- 73

Query: 200 TQPVYVWRDDPNSRQKTIQEIIDRAKSEQDW 230
                V RD P S  K+++ +          
Sbjct: 74  -GAFSVDRDSPRSAAKSLKYVARLLSKPGSV 103


>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases.  Function in
           phospholipid biosynthesis and have either
           glycerolphosphate, 1-acylglycerolphosphate, or
           2-acylglycerolphosphoethanolamine acyltransferase
           activities. Tafazzin, the product of the gene mutated in
           patients with Barth syndrome, is a member of this
           family.
          Length = 118

 Score = 31.9 bits (73), Expect = 0.096
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 158 ILVIAPHSTFLDAGIVYVTDFP------SIIVRRESGLNPWLGKLINYTQPVYVWRDDPN 211
            LV+A H +FLD  +V     P        + ++E    P LG L+     +++ R +  
Sbjct: 1   ALVVANHQSFLD-PLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGR 59

Query: 212 SRQKTIQEIIDRAKS 226
             +  ++E ++  K 
Sbjct: 60  KARAALREAVELLKE 74


>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
            modification].
          Length = 2365

 Score = 32.6 bits (74), Expect = 0.17
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 85   VISVAPHSSFSDALPVICIGAPSVVARGETASLPFVKRIIVKLWI--CKLGRAAYRAGGM 142
            V  V  H +F   L    I     V    T +L F+K I   +W    +L + A      
Sbjct: 1814 VYRVTLHKTFEGNLTTKPINGAIFVLNPATGNL-FLKVIHTSVWAGQKRLIQLAKWKTAE 1872

Query: 143  QITSIGVQASRQEAPILVIAPHSTFLDAGIVYVTDFPSIIVR 184
            ++ ++G     +E P  +I    + LD   V++ DFP+I +R
Sbjct: 1873 EVFALGRSLPVEEQPKQIIVTRKSMLDPLEVHILDFPNISIR 1914


>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase.  Members of this
           family are MshD, the acetyltransferase that catalyzes
           the final step of mycothiol biosynthesis in various
           members of the Actinomyctes, Mycothiol replaces
           glutathione in these species [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Glutathione and
           analogs].
          Length = 292

 Score = 30.1 bits (68), Expect = 0.81
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 65  VMGFHWVKIKGRQASCKEAPVISVAPHS---SFSDALPVICIGAPSVVARGETASLPFV 120
           ++GFHW K+   + +  E  V+ V P +      DAL    IG   + ARG  A + +V
Sbjct: 211 LLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDAL--TLIGLHHLAARGLPAVMLYV 267


>gnl|CDD|119378 cd06416, GH25_Lys1-like, Lys-1 is a lysozyme encoded by the
           Caenorhabditis elegans lys-1 gene. This gene is one of a
           several lysozyme genes upregulated upon infection by the
           Gram-negative bacterial pathogen Serratia marcescens.
           Lys-1 contains a glycosyl hydrolase family 25 (GH25)
           catalytic domain.  This family also includes Lys-5 from
           Caenorhabditis elegans.
          Length = 196

 Score = 29.6 bits (67), Expect = 1.2
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 10/37 (27%)

Query: 206 WRDDPNSRQKTIQEIIDRAK----------SEQDWPQ 232
           W  D  S  + +QE++  AK          S+ DW Q
Sbjct: 101 WSSDVASNCQFLQELVSAAKALGLKVGIYSSQYDWSQ 137


>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
          Length = 665

 Score = 29.4 bits (66), Expect = 1.7
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 82  EAPVISVAPHSSFSDALPVICIGAPSVV-ARGETASLPFVKRIIVKLWICKLGRAAYRAG 140
             PV+ V      + A   +   A + V A  + A+    +RI   +       +     
Sbjct: 79  VPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV----PEHSRDTEA 134

Query: 141 GMQITSIGVQASRQ-------EAPILVIAPHSTFLDAGIVYVTD 177
            M I+ + V++ R+       EAP+ +    +T  D  ++Y+ D
Sbjct: 135 RMPISDLTVESDRRLKERALDEAPVGITIADATLPDEPLIYIND 178


>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase.  This family contains
           acyltransferases involved in phospholipid biosynthesis
           and other proteins of unknown function. This family also
           includes tafazzin, the Barth syndrome gene.
          Length = 131

 Score = 28.0 bits (63), Expect = 2.3
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 71  VKIKGRQASCKEAPVISVAPHSSFSDALPVICI-----GAPSVVARGETASLPFVKRIIV 125
           V++ G +   +  P I VA H S+ D L +  +          VA+ E  +LP +  ++ 
Sbjct: 2   VRVHGLENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWLMR 61

Query: 126 KL---WICKLGRAAYRAGGMQITSIGVQASRQEAPILV 160
            L   +I +   A   A  ++     V+  R+   +L+
Sbjct: 62  LLGCIFIDR-KNAKDAANTLEYL---VELLREGELVLI 95



 Score = 28.0 bits (63), Expect = 2.4
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 144 ITSIGVQASRQEAPILVIAPHSTFLDA----GIVYVTDFP-SIIVRRESGLNPWLGKLIN 198
           +   G++   +  P +V+A H ++LD      ++     P   + + E    P LG L+ 
Sbjct: 2   VRVHGLENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWLMR 61

Query: 199 YTQPVYVWRDDPNSRQKTIQEIIDR 223
               +++ R +      T++ +++ 
Sbjct: 62  LLGCIFIDRKNAKDAANTLEYLVEL 86


>gnl|CDD|184080 PRK13483, PRK13483, enterobactin receptor protein; Provisional.
          Length = 660

 Score = 28.2 bits (63), Expect = 4.0
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 134 RAAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLDAGIVY-VTDFPSIIVRRESGLNPW 192
           R  YR    Q T+    +S        IAP  TFLD G  Y +TD   +      G+   
Sbjct: 585 RVNYRGEESQPTTGPSSSS-------FIAPSYTFLDLGANYQLTDNLKLSA----GIYNL 633

Query: 193 LGKLINYTQPVYV 205
             K INY +  YV
Sbjct: 634 FDKEINYEEYGYV 646


>gnl|CDD|224577 COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope
           biogenesis, outer membrane].
          Length = 336

 Score = 28.1 bits (63), Expect = 4.7
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 19/97 (19%)

Query: 97  ALPVICIGAPSVVARGETASLPFVKRIIVKLWICKLGRAA-YRAGGMQITSIGVQASRQE 155
            +PVIC+G  +V   G+T   P V      +W+ +  +A   R G +          + +
Sbjct: 46  PVPVICVGNLTVGGTGKT---PVV------IWLAEALQARGVRVGVVSRGY----GGKLK 92

Query: 156 APILVIAPHSTFLDAG-----IVYVTDFPSIIVRRES 187
              LV   H+T  + G     +   T  P  +     
Sbjct: 93  VVPLVDNIHTTAAEVGDEPLLLARRTGAPVAVSPDRK 129


>gnl|CDD|130295 TIGR01228, hutU, urocanate hydratase.  This model represents the
           second of four enzymes involved in the degradation of
           histidine to glutamate [Energy metabolism, Amino acids
           and amines].
          Length = 545

 Score = 27.5 bits (61), Expect = 7.2
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 135 AAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLDAGIVYVTDFPSIIVRRESGLNPWLG 194
              +A G +  SIG+  +  E            L  G+V     P ++  + S  +P  G
Sbjct: 218 EEAKAEG-KPISIGLLGNAAEV-------LPELLKRGVV-----PDVVTDQTSAHDPLNG 264

Query: 195 KLINYTQPVYVWRDDPNSRQKTIQEIIDRAK 225
               Y    Y   D    RQ+  +  +  AK
Sbjct: 265 ----YIPEGYTVEDADKLRQEEPEAYVKAAK 291


>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
          Length = 326

 Score = 27.2 bits (61), Expect = 7.6
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 202 PVYV-WRDDPNSRQKTIQEIIDRAKSEQDWPQF 233
           P+Y+ W +D  +  + I+++ID+     +W  F
Sbjct: 2   PIYLYWGEDDFALNQAIEKLIDQVVD-PEWKSF 33


>gnl|CDD|165273 PHA02968, PHA02968, hypothetical protein; Provisional.
          Length = 414

 Score = 27.3 bits (60), Expect = 8.3
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 173 VYVTDFPSIIVRRESGLNPWLGKLINYTQPVYVWRDDPNSRQKTIQEIIDRAKSEQDWPQ 232
           +   D P I   +    NPW+   ++ ++ V +W D           I+D+ K   DWP 
Sbjct: 362 LISPDIPDINDYKYLPFNPWM---LDISKEVELWDD-------LKLNILDKEKWSNDWPA 411

Query: 233 FS 234
            S
Sbjct: 412 LS 413


>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core.  This domain is
           found in eukaryotes, and is about 20 amino acids in
           length. It is found associated with pfam10597,
           pfam10596, pfam10598, pfam08083, pfam08082, pfam01398,
           pfam08084. There is a conserved LILR sequence motif. The
           domain is a selenomethionine domain in a subunit of the
           spliceosome. The function of PRP8 domain IV is believed
           to be interaction with the splicosomal core.
          Length = 231

 Score = 27.0 bits (60), Expect = 8.5
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 119 FVKRIIVKLWIC--KLGRAAYRAGGMQITSIGVQASRQEAPILVIAPHSTFLDAGIVYVT 176
           F+K I   +W    +L + A      ++ ++     ++E P  +I      LD   V++ 
Sbjct: 59  FLKVIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPKEEQPKQIIVTRKGMLDPLEVHLL 118

Query: 177 DFPSIIVRR 185
           DFP+I++R 
Sbjct: 119 DFPNIVIRG 127


>gnl|CDD|237449 PRK13616, PRK13616, lipoprotein LpqB; Provisional.
          Length = 591

 Score = 27.3 bits (61), Expect = 9.8
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 75  GRQASCKEAPVISVAPHSSFSDALPVICIGAP-SVVA 110
           GR     E PV  V    S SDALP   + AP   VA
Sbjct: 513 GRSDP--EHPVWYVNLDGSNSDALPSRNLSAPVVAVA 547


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,341,751
Number of extensions: 1190949
Number of successful extensions: 1615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 34
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)