RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4684
         (237 letters)



>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 253

 Score = 27.0 bits (60), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 153 RQEAPILVIAPHSTFLDAGIVYVTDFPSIIVR 184
           ++E P  +I      LD   V++ DFP+I +R
Sbjct: 92  KEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIR 123


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 25.9 bits (57), Expect = 4.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 153 RQEAPILVIAPHSTFLDAGIVYVTDFPSIIVR 184
            +E P  +I      LD   V++ DFP+I+++
Sbjct: 84  VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIK 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 925,087
Number of extensions: 43338
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 5
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)