BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4686
(2028 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 876 QFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQIC 935
+F S++ V+Q ++ E+ + C C F L+EH THTG KPY+C C
Sbjct: 3 EFGSSSSVAQ-------AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55
Query: 936 KKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHIC 995
KSF++K +DL RH++ KP ++C C K+F ++ +L H G+K + C
Sbjct: 56 GKSFSDK----KDLTRHQRTHTGEKP---YKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 996 KVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSL--KGNLKDHILKCHTGERPYKCDVC 1051
CG +L+ H +HTGEKP+ C CGKS + NL H + HTGE+PYKC C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPEC 167
Query: 1052 GSSFKDKWYLGVHMRKHNGEK 1072
G SF + L VH R H G+K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKK 188
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 87/206 (42%), Gaps = 43/206 (20%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQLAEQSDE 1415
+ C C K + R L EH HTG KPY C C +SF K DL RH++
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK----DLTRHQRT------ 71
Query: 1416 MHSTSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLREAHSQK 1475
TG+ + KCP C K++S +R H R +K
Sbjct: 72 ---------------HTGEKPY------------KCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 1476 KYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTG 1535
YAC CGK F+ + H+ T ++ ++C C K F R +L H THTG
Sbjct: 105 PYACPECGKSFSQLAHLRAHQ------RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Query: 1536 NKPYQCQICNKSFGTRRNYRLHLKRH 1561
KPY+C C KSF R +H + H
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 1861 CDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLED 1920
C C + F + + H ++H G + CP C K F GE P
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF---SDKKDLTRHQRTHTGEKP--- 77
Query: 1921 TYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEKPFCC 1978
Y C C K F + ++ H+ G+K + C CG +++ H +HTGEKP+ C
Sbjct: 78 -YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 1979 DICGKSL--KGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
CGKS + NL H GE+PYKC CG SF + +VH R H
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 1883 GVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYLCDLCSKVFLEHKDMIRHRE 1942
G + CP C K F GE P Y C C K F + KD+ RH+
Sbjct: 18 GEKPYACPECGKSF---SRSDHLAEHQRTHTGEKP----YKCPECGKSFSDKKDLTRHQR 70
Query: 1943 WVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQG 1998
G+K + C CG + N++ H +HTGEKP+ C CGKS +L+AH G
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PYKC CG SF + + H R H +K
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 1015 GEKPFCCHICGKSLKGNLKDHIL---KCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
GEKP+ C CGKS + DH+ + HTGE+PYKC CG SF DK L H R H GE
Sbjct: 18 GEKPYACPECGKSF--SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KPY C CG++F+ R+ H + H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTH 100
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 1917 PLEDTYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGEK 1974
P E Y C C K F + H+ G+K + C CG K ++ RH +HTGEK
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 1975 PFCCDICGKSL--KGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
P+ C CGKS + NL+AH GE+PY C CG SF H H R H +K
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 73/170 (42%), Gaps = 8/170 (4%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESK 690
+K Y C C K F L+EH HTG K ++C C +F + L+RH + H K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH--TGEK 76
Query: 691 MYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELEEKEDSSFERKKSKD 750
YKCP C K F++ ++ H+ G K + C CG + L + + K
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK---- 132
Query: 751 SFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKH 800
+ C CGK F + H +R H K +KC C FS L H
Sbjct: 133 PYKCPECGKSFSREDNLHTH-QRTHTG-EKPYKCPECGKSFSRRDALNVH 180
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 558 LEEYQQI-VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDL 616
L E+Q+ K +CP C K F+ K + H R H+ K Y C CGK F+ + L
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRA 95
Query: 617 HRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRS 676
H+++H +K Y C C K F L H HTG K ++C C +F +
Sbjct: 96 HQRTHTG-------EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN 148
Query: 677 LSRHLKIHEYNESKMYKCPVCSKMFT 702
L H + H K YKCP C K F+
Sbjct: 149 LHTHQRTH--TGEKPYKCPECGKSFS 172
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 42/199 (21%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK-FE 1357
CP C K++S + H R HT +K Y C CGK F+ + H+ + TG K ++
Sbjct: 24 CPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQ---RTHTGEKPYK 79
Query: 1358 CIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQLAEQSDEMH 1417
C C K + ++ +L+ H HTG KPY C C +SF L R + H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH----------- 128
Query: 1418 STSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLREAHSQKKY 1477
TG+ + KCP C K++S + H R +K Y
Sbjct: 129 --------------TGEKPY------------KCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 1478 ACDVCGKQFTSTNRVSQHK 1496
C CGK F+ + ++ H+
Sbjct: 163 KCPECGKSFSRRDALNVHQ 181
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 1473 SQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINT 1532
+K YAC CGK F+ ++ +++H+ T ++ ++C C K F DL H T
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQ------RTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 1533 HTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTRH 1592
HTG KPY+C C KSF R N R H + H E + C C K F + + L H
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTG-------EKPYACPECGKSFSQLAHLRAH 124
Query: 1593 MNFTHGDK 1600
G+K
Sbjct: 125 QRTHTGEK 132
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 84/230 (36%), Gaps = 65/230 (28%)
Query: 431 CDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNE 490
C C + F+ +LAEH HTG Y C C K+F L RH +
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT------------ 71
Query: 491 VKDIFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHMFMTESFENPNEPRVLNSNRYPL 550
H KC C ++FS + +L+ H + ++ P
Sbjct: 72 -------HTGEKPYKCPECGKSFSQRANLRAH------------------QRTHTGEKPY 106
Query: 551 AIDGGLSLEEYQQIVATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTT 610
A CP C K F+ +R H R H+ K Y C CGK F+
Sbjct: 107 A--------------------CPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSR 145
Query: 611 LSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
L H+++H +K Y+C C K F + AL+ H HTG K
Sbjct: 146 EDNLHTHQRTHTG-------EKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 506 CRYCARTFSTQNDLKEHVSSVHMFMTESFENPNE-PRVLNSNRYPLAIDGGLSLEEYQQI 564
C C ++FS + L EH T + E P + P S L +Q+
Sbjct: 24 CPECGKSFSRSDHLAEHQ------RTHTGEKPYKCPECGKS------FSDKKDLTRHQRT 71
Query: 565 -VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNE 623
K +CP C K F+ +R H R H+ K Y C CGK F+ L++L H+++H
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 624 TVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKI 683
+K Y+C C K F + L H HTG K ++C C +F +L+ H +
Sbjct: 131 -------EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 684 H 684
H
Sbjct: 184 H 184
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 1783 SLEQWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQC 1842
S+ Q EK CP C K ++ + +H R H +K +KC C K F + L
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTR 67
Query: 1843 HKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXX 1902
H Q H G KP +C C + F + + H ++H G + CP C K F
Sbjct: 68 H-QRTHTG-EKP----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF---SQL 118
Query: 1903 XXXXXXXXXXAGEIPLEDTYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--K 1960
GE P Y C C K F ++ H+ G+K + C CG +
Sbjct: 119 AHLRAHQRTHTGEKP----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 1961 GNMKRHMLSHTGEK 1974
+ H +HTG+K
Sbjct: 175 DALNVHQRTHTGKK 188
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 72/185 (38%), Gaps = 22/185 (11%)
Query: 1712 SLEQWNEMVASKSKECPVCHKTSMESSSSDINKQTFPKTSKTSTSENENHKPSCGNSFMV 1771
S+ Q K CP C K+ S + +T T E P CG SF
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDH-------LAEHQRTHTGEKPYKCPECGKSFS- 60
Query: 1772 HKNQPIDTGDFSLEQWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQ 1831
D D + Q R EK CP C K ++ +R H R H +K + C C
Sbjct: 61 ------DKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECG 112
Query: 1832 KQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILCPI 1891
K F L+ H Q H G KP +C C + F ++ + H ++H G + CP
Sbjct: 113 KSFSQLAHLRAH-QRTHTG-EKP----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 1892 CKKGF 1896
C K F
Sbjct: 167 CGKSF 171
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 396 ERKFICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNT 455
E+ + C CGK F+ + H + H+ H+ ++ +C C + F+ K+ L H HTG
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQR-THTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 456 IYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKDIFP--SHLQSYQ--------IK 505
Y C C K+F LR H + H E F +HL+++Q K
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 506 CRYCARTFSTQNDLKEH 522
C C ++FS +++L H
Sbjct: 136 CPECGKSFSREDNLHTH 152
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 284 KMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYTFECQHCEDKFSTPFELNKHNESKHE 343
K + C C SF H+ RT E ++C C FS +L +H +
Sbjct: 20 KPYACPECGKSF----SRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRT--H 72
Query: 344 KGRKLNPXXXXXXXXXXXXXXXXXXXQCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDI 403
G K +CP C K F+ ++R H R H G E+ + C
Sbjct: 73 TGEK--------------------PYKCPECGKSFSQRANLRAHQR-THTG-EKPYACPE 110
Query: 404 CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICK 463
CGK F+ H H+ H+ ++ +C C + F+ + L H HTG Y C C
Sbjct: 111 CGKSFSQLAHLRAHQR-THTGEK-PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 464 KTFLYTNGLRRH 475
K+F + L H
Sbjct: 169 KSFSRRDALNVH 180
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 30/189 (15%)
Query: 1682 SNMGDYSLEEWNKNKHEVIESQEPMDTGDYSLEQWNEMVASKSKECPVCHKTSMESSSSD 1741
S++ +LE K + E + D+ E K +CP C K S
Sbjct: 8 SSVAQAALEPGEK-PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGK-------SF 59
Query: 1742 INKQTFPKTSKTSTSENENHKPSCGNSFMVHKN----QPIDTGDF---------SLEQWR 1788
+K+ + +T T E P CG SF N Q TG+ S Q
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 1789 QLVA-------EKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQ 1841
L A EK CP C K ++ + H R H +K +KC C K F +L
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALN 178
Query: 1842 CHKQFVHLG 1850
H Q H G
Sbjct: 179 VH-QRTHTG 186
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 89 ISNVKLEILELPDRRTCRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKK 148
++ LE E P C C + F L H R H GE+ C C SFS+K
Sbjct: 10 VAQAALEPGEKP--YACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLT 66
Query: 149 KHYSAFHKGMPFIPSFTCPICQKIFKNKEWYLDHLSLH 186
+H P + CP C K F + H H
Sbjct: 67 RHQRTHTGEKP----YKCPECGKSFSQRANLRAHQRTH 100
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSF 164
C C + F LR H R H GE+ C C SFS + H P +
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP----Y 134
Query: 165 TCPICQKIFKNKEWYLDHLSLH 186
CP C K F ++ H H
Sbjct: 135 KCPECGKSFSREDNLHTHQRTH 156
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
Length = 87
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1016 EKPFCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
EKP+ C CGKS NL+ H + HTGE+PYKC CG SF L H R H GEKP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1074 YNCDYCGQTFAARSTFTFHLKKHE 1097
Y C CG++F+ + H + H+
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 990 DKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSLK--GNLKDHILKCHTGERP 1045
+K + C CG NLQKH +HTGEKP+ C CGKS +L+ H + HTGE+P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKP 60
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
YKC CG SF +L H R H +K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1947 DKCHVCKVCGAKIK--GNMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQGERPY 2002
+K + C CG N+++H +HTGEKP+ C CGKS +L+ H GE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 2003 KCDVCGSSFKDKKHFSVHIRNH 2024
KC CG SF H S H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 1474 QKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTH 1533
+K Y C CGK F+ ++ + +H+ T ++ ++C C K F ++ DLQ+H TH
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR------THTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRHKRS 1564
TG KPY+C C KSF +R + HL RH+R+
Sbjct: 56 TGEKPYKCPECGKSF-SRSD---HLSRHQRT 82
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 1507 IQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAG 1566
+++ ++C C K F ++ +LQ+H THTG KPY+C C KSF + L++H+R+
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSD----LQKHQRTHT 56
Query: 1567 QLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
KP ++C C K F + L+RH TH +K
Sbjct: 57 GEKP---YKCPECGKSFSRSDHLSRHQR-THQNK 86
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
K Y C CGK F+ S L H+++H +K Y+C C K F L +H H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTG-------EKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIHE 685
TG K ++C C +F LSRH + H+
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESK 690
+K Y+C C K F L +H HTG K ++C C +F L +H + H K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH--TGEK 59
Query: 691 MYKCPVCSKMFTELYEMKRHR 711
YKCP C K F+ + RH+
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQ 80
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 865 QKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTH 924
+K Y C CGK F+ ++ + +H+ T E+ ++C C F S L +H TH
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR------THTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 925 TGNKPYQCQICKKSFANKRSYQRDLKRHK 953
TG KPY+C C KSF+ R + H+
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 962 EDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI--KGNLQKHMLSHTGEKPF 1019
E ++C C K+F + +L KH G+K + C CG +LQKH +HTGEKP+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1020 CCHICGKSLKGNLKDHILK 1038
C CGKS + DH+ +
Sbjct: 62 KCPECGKSF--SRSDHLSR 78
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 898 IERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAG 957
+E+ ++C C F S L +H THTG KPY+C C KSF S DL++H++
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSF----SQSSDLQKHQRTHT 56
Query: 958 QLKPEDIHECKICHKTFLEKGSLAKHM 984
KP ++C C K+F L++H
Sbjct: 57 GEKP---YKCPECGKSFSRSDHLSRHQ 80
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 1918 LEDTYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGEKP 1975
+E Y C C K F + ++ +H+ G+K + C CG ++++H +HTGEKP
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1976 FCCDICGKSL 1985
+ C CGKS
Sbjct: 61 YKCPECGKSF 70
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 1323 QKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHTGN 1381
+K Y C CGK F+ ++ + H+ + TG K ++C C K + + DL++H HTG
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR---THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 1382 KPYHCQICKESF 1393
KPY C C +SF
Sbjct: 59 KPYKCPECGKSF 70
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 571 QCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEE 630
+CP C K F+ ++ H R H+ K Y C CGK F+ S L H+++H
Sbjct: 6 KCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTG------- 57
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y+C C K F LS H H K
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
CP C K++S +++KH R H+ +K Y C CGK F+ ++ + +H+ T E+
Sbjct: 7 CPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQR------THTGEK 59
Query: 901 KFECDYCKMKFKSKSFLSEHINTHTGNK 928
++C C F LS H TH K
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 1793 EKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVH 1852
EK CP C K ++ ++KH R H +K +KC C K F S LQ H Q H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGE- 58
Query: 1853 KPKFLNMECDYCSRKFPSKNEVTNHIKSHM 1882
KP +C C + F + ++ H ++H
Sbjct: 59 KP----YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 396 ERKFICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNT 455
E+ + C CGK F+ + + +H+ H+ ++ +C C + F+ L +H HTG
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEK-PYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 456 IYGCRICKKTFLYTNGLRRH 475
Y C C K+F ++ L RH
Sbjct: 60 PYKCPECGKSFSRSDHLSRH 79
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 30/108 (27%)
Query: 780 KTFKCDLCSDRFSTSAKLKKHVDKIHFTPEFQEPSKKNEPLDTGDYTLEQWNELVTAQSK 839
K +KC C FS S+ L+KH + H TG+ +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTH----------------TGEKPYK----------- 34
Query: 840 DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHK 887
CP C K++S ++KH R H+ +K Y C CGK F+ ++ +S+H+
Sbjct: 35 -CPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 1823 KKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHM 1882
K +KC C K F S +LQ H Q H G KP +C C + F +++ H ++H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGE-KP----YKCPECGKSFSQSSDLQKHQRTHT 56
Query: 1883 GVRDILCPICKKGF 1896
G + CP C K F
Sbjct: 57 GEKPYKCPECGKSF 70
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 660 KEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGGKC 719
K ++C C +F +L +H + H K YKCP C K F++ ++++H+ G K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH--TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 720 HVCKICGATI 729
+ C CG +
Sbjct: 61 YKCPECGKSF 70
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 558 LEEYQQI-VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDL 616
L+++Q+ K +CP C K F+ ++ H R H+ K Y C CGK F+ +L
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSR 78
Query: 617 HRKSHN 622
H+++H
Sbjct: 79 HQRTHQ 84
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 690 KMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELEEKEDSSFERKKSK 749
K YKCP C K F++ +++H+ G K + C CG + ++L++ + + K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK--- 59
Query: 750 DSFHCDTCGKYFRSRQICNKHIKRVHLN 777
+ C CGK F ++H +R H N
Sbjct: 60 -PYKCPECGKSFSRSDHLSRH-QRTHQN 85
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1450 KCPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHK 1496
KCP C K++S ++ H R +K Y C CGK F+ ++ +S+H+
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 1763 PSCGNSFMVHKNQPIDTGDFSLEQWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSK 1822
P CG SF N + R EK CP C K ++ ++KH R H +
Sbjct: 8 PECGKSFSQSSN--------LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGE 58
Query: 1823 KKFKCDLCQKQFKASRSLQCHK 1844
K +KC C K F S L H+
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQ 80
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHK 1345
CP C K++S +++H R HT +K Y C CGK F+ ++ ++ H+
Sbjct: 35 CPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHK 418
+CP C K F+ + ++ H R H G E+ + C CGK F+ + H SRH+
Sbjct: 34 KCPECGKSFSQSSDLQKHQR-THTG-EKPYKCPECGKSFSRSDHLSRHQ 80
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSF 164
C C + F + L++H R H GE+ C C SFS +KH P +
Sbjct: 7 CPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP----Y 61
Query: 165 TCPICQKIFKNKEWYLDHLSLHE 187
CP C K F DHLS H+
Sbjct: 62 KCPECGKSFSRS----DHLSRHQ 80
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 431 CDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNE 490
C C + F+ L +H HTG Y C C K+F ++ L++H
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR------------- 53
Query: 491 VKDIFPSHLQSYQIKCRYCARTFSTQNDLKEH 522
+H KC C ++FS + L H
Sbjct: 54 ------THTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 1889 CPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYLCDLCSKVFLEHKDMIRHREWVHGDK 1948
CP C K F GE P Y C C K F + D+ +H+ G+K
Sbjct: 7 CPECGKSF---SQSSNLQKHQRTHTGEKP----YKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 1949 CHVCKVCGAKI--KGNMKRHMLSHTGEK 1974
+ C CG ++ RH +H +K
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S K NL HI + HTG++P++C +C +F + L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA T T H K H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ + H I T Q+ F+C C + F + L HI
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR------IHTGQKPFQCRICMRNFSQQASLNAHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F T H K H R
Sbjct: 56 THTGEKPFACDICGRKFATLHTRTRHTKIHLR 87
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1003 KGNLQKHMLSHTGEKPFCCHICGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWY 1060
K NL H+ HTG+KPF C IC + S + +L HI + HTGE+P+ CD+CG F
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI-RTHTGEKPFACDICGRKFATLHT 77
Query: 1061 LGVHMRKHNGEK 1072
H + H +K
Sbjct: 78 RTRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 1960 KGNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKD---- 2013
K N+ H+ HTG+KPF C IC + S + +L AHI GE+P+ CD+CG F
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTR 78
Query: 2014 KKHFSVHIR 2022
+H +H+R
Sbjct: 79 TRHTKIHLR 87
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F K L H+ IHTG K QC +C F SL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F L+ RH
Sbjct: 60 EKPFACDICGRKFATLHTRTRH 81
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ + H I T ++ F+C C F ++ L+ HI
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR------IHTGQKPFQCRICMRNFSQQASLNAHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA + R K H
Sbjct: 56 THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + H+R +H +K F+C +C + F SL H + H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF + + T H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ H + TG K F+C C + + ++ L HI HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH---IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Query: 1380 GNKPYHCQICKESFYTLKT 1398
G KP+ C IC F TL T
Sbjct: 59 GEKPFACDICGRKFATLHT 77
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ + LD H + H K ++C C + F + +L+ H+ H
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTG-------QKPFQCRICMRNFSQQASLNAHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F + + +RH KIH
Sbjct: 58 TGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI--KGNLQKHMLSHTGEKPFCCHICGKS 1027
C + F +K +L H+ G K C++C + +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGE 1973
+E Y C + C + F + ++ H G K C++C + ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ + H+R +H+ K + C IC + F+ + L+ H ++H
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG------ 59
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIH 656
+K + CD C +KF + + H IH
Sbjct: 60 -EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F K+ L HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F ++ SL H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S ++ H+R +H+ QK + C +C + F+ ++ H +H G
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF + + H H K
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S K NL HI G++P++C +C +F + + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F TL H K H
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + + L + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F + + ++H
Sbjct: 68 CGRKFATLHTRTRH 81
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + H H+ ++ +C C R F+ + L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI-HT-GQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F + RH I R KD
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 819 PLDTGDYTLEQWNELVT-------AQSKDCPVCHKTYSTPKSMRKHLREVHSSQKKYVCD 871
P+++ D Q L T + C +C + +S S+ H+R H+ +K + CD
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACD 66
Query: 872 MCGKQFTSNNRVSQH 886
+CG++F + + ++H
Sbjct: 67 ICGRKFATLHTRTRH 81
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+R+ H G E+ F CDICG++F + +RH
Sbjct: 36 QCRICMRNFSQQASLNAHIRT-HTG-EKPFACDICGRKFATLHTRTRH 81
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S + H+R QK + C +C + F+ ++ H +H G +
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF H H K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 1292 VASGSK--DCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQF----TSTNRVNIH 1344
+ +G K C +C + +S ++ H+R HT +K + CDICG++F T T IH
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 1862 DYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDT 1921
+ C R+F K + HI+ H G + C IC + F GE P
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF---SQQASLNAHIRTHTGEKP---- 62
Query: 1922 YLCDLCSKVFLEHKDMIRH 1940
+ CD+C + F RH
Sbjct: 63 FACDICGRKFATLHTRTRH 81
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F +L H + +H G KP +C C R F + + HI++H G + C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTG-QKP----FQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F T L H+R+ H G++ CR+C +FS + H P F C
Sbjct: 12 CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F H +H Q
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQ 88
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 740 DSSFERKKSKDSFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKK 799
D+ + F C C + F + N HI R H K F CD+C +F+T +
Sbjct: 23 DTHIRIHTGQKPFQCRICMRNFSQQASLNAHI-RTHTG-EKPFACDICGRKFATLHTRTR 80
Query: 800 HVDKIHF 806
H KIH
Sbjct: 81 HT-KIHL 86
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 1927 CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGEKPFCCDI--CG 1982
C+K+F ++ M +H HG + HVC CG +KRH L HTGEKPF C CG
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 1983 K--SLKGNLKAHILRCQGERPYKC--DVCGSSFKDKKHFSVHIRNHGEDK 2028
K SL NL+ H+ G+RPY C D C F + HI H + K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 1448 TKKCP--VCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIK 1505
T CP C K + MR HL H + + C CGK F ++++ +H+ ++
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQ------LVH 57
Query: 1506 TIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQCQI--CNKSFGTRRNYRLHLKRH 1561
T ++ F+C F C K+F +F+L+ H+ HTG++PY C CNK F N + H+ H
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 1562 KRS 1564
++
Sbjct: 118 AKA 120
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 1006 LQKHMLSHTGEKPFCCHICGKSL--KGNLKDHILKCHTGERPYKC--DVCGSSFKDKWYL 1061
++KH+ +H G + C CGK+ LK H L HTGE+P++C + CG F + L
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 1062 GVHMRKHNGEKPYNC--DYCGQTFAARSTFTFHLKKHEE 1098
H+R H G++PY C D C + FA + H+ H +
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 844 CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFE 903
C K + +MRKHL + +VC CGK F ++++ +H+ ++ T E+ F+
Sbjct: 13 CTKMFRDNSAMRKHLHT--HGPRVHVCAECGKAFVESSKLKRHQ------LVHTGEKPFQ 64
Query: 904 CDY--CKMKFKSKSFLSEHINTHTGNKPYQCQI--CKKSFANKRSYQRDLKRHKQ 954
C + C +F L H+ HTG++PY C C K FA + + + H +
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)
Query: 1302 CHKTYSTPKTMRRHLRQVHTSQKR-YLCDICGKQFTSTNRVNIHKACVHSSTGNK-FECI 1359
C K + MR+HL HT R ++C CGK F ++++ H+ VH TG K F+C
Sbjct: 13 CTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQL-VH--TGEKPFQCT 66
Query: 1360 Y--CKKKYRRKFDLKEHINKHTGNKPYHC 1386
+ C K++ F+L+ H+ HTG++PY C
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 374 CTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQKMECDY 433
CTK+F MR HL H R +C CGK F + RH+ H+ ++ +C +
Sbjct: 13 CTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKP-FQCTF 67
Query: 434 --CKRKFTCKRYLAEHINAHTGNTIYGCRI--CKKTFLYTNGLRRHILSRHK 481
C ++F+ L H+ HTG+ Y C C K F + L+ HIL+ K
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 57/144 (39%), Gaps = 41/144 (28%)
Query: 935 CKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHI 994
C K F + + ++ L H +H C C K F+E
Sbjct: 13 CTKMFRDNSAMRKHLHTHG--------PRVHVCAECGKAFVE------------------ 46
Query: 995 CKVCGAKIKGNLQKHMLSHTGEKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKC-- 1048
L++H L HTGEKPF C CGK SL NL+ H+ + HTG+RPY C
Sbjct: 47 --------SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPF 97
Query: 1049 DVCGSSFKDKWYLGVHMRKHNGEK 1072
D C F L H+ H K
Sbjct: 98 DGCNKKFAQSTNLKSHILTHAKAK 121
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 575 CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKY 634
C K+F MR HL H H + ++C CGK F S L H+ H +K +
Sbjct: 13 CTKMFRDNSAMRKHL-HTHGP-RVHVCAECGKAFVESSKLKRHQLVHT-------GEKPF 63
Query: 635 EC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHV--CNTAFYHIRSLSRHLKIH 684
+C + C K+F L H+ IHTG + + C CN F +L H+ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 572 CPICEKIFAAPKQMRMHLRHVHSSIKRYMCDI--CGKQFTTLSYLDLHRKSHNETVKRKE 629
C C K F +++ H + VH+ K + C CGK+F+ LD + ++H V+
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFS----LDFNLRTH---VRIHT 88
Query: 630 EDKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQ 663
D+ Y C D CNKKF L H++ H K +Q
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 688 ESKMYKCP--VCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELEEKEDSSFER 745
E + CP C+KMF + M++H H HG + HVC CG ++L+ +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 746 KKSKDSFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKC--DLCSDRFSTSAKLKKHV 801
K + +F + CGK F H+ R+H + + C D C+ +F+ S LK H+
Sbjct: 61 KPFQCTF--EGCGKRFSLDFNLRTHV-RIHTG-DRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 604 CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQ 663
C K F S + H +H V + C C K F L H ++HTG K Q
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--------HVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 664 CHV--CNTAFYHIRSLSRHLKIHEYNESKMYKCPV--CSKMFTELYEMKRH 710
C C F +L H++IH + + Y CP C+K F + +K H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGD--RPYVCPFDGCNKKFAQSTNLKSH 113
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1513 CDFCKKKFYRNFDLQEHINTHTGNKPYQCQI--CNKSFGTRRNYRLHLKRHKRSAGQLKP 1570
C C K F + L+ H HTG KP+QC C K F N R H++ H + P
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 1571 EDIHECKICHKIFLENSRLTRHM 1593
D C+K F +++ L H+
Sbjct: 97 FD-----GCNKKFAQSTNLKSHI 114
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 1794 KTKLCP--VCNKEYATPVTMRKHLR----EVHVSKKKFKCDLCQKQFKASRSLQCHKQFV 1847
+T CP C K + MRKHL VHV C C K F S L+ H Q V
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV------CAECGKAFVESSKLKRH-QLV 56
Query: 1848 HLGVHKPKFLNMECDY--CSRKFPSKNEVTNHIKSHMGVRDILCPI--CKKGF 1896
H G KP +C + C ++F + H++ H G R +CP C K F
Sbjct: 57 HTG-EKP----FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK- 1355
C C K + ++RH + VHT +K + C CGK+F+ + H V TG++
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTH---VRIHTGDRP 92
Query: 1356 FECIY--CKKKYRRKFDLKEHINKHTGNK 1382
+ C + C KK+ + +LK HI H K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVC--DMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
C C K + +++H + VH+ +K + C + CGK+F+ + + H I T
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR------IHTG 89
Query: 899 ERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQ 931
+R + C D C KF + L HI TH K Q
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 1792 AEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDL--CQKQFKASRSLQCHKQFVHL 1849
+ +C C K + +++H + VH +K F+C C K+F +L+ H + +H
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHT 88
Query: 1850 GVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
G +P D C++KF + +HI +H ++
Sbjct: 89 G-DRPYVCPF--DGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 873 CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQC 932
C K F N+ + +H ++H R C C F S L H HTG KP+QC
Sbjct: 13 CTKMFRDNSAMRKH-LHTH------GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 933 QI--CKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKI--CHKTFLEKGSLAKHM 984
C K F S +L+ H ++ +P + C C+K F + +L H+
Sbjct: 66 TFEGCGKRF----SLDFNLRTHVRIHTGDRP---YVCPFDGCNKKFAQSTNLKSHI 114
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S K NL HI + HTG++P++C +C +F L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA T H K H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ + H I T Q+ F+C C + F ++ L +HI
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR------IHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F T H K H R
Sbjct: 56 THTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 1003 KGNLQKHMLSHTGEKPFCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSF 1055
K NL H+ HTG+KPF C IC ++ L HI + HTGE+P+ CD+CG F
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI-RTHTGEKPFACDICGRKF 72
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ + H I T ++ F+C C F + L++HI
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR------IHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA + R K H
Sbjct: 56 THTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 1960 KGNMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQGERPYKCDVCGSSFKD---- 2013
K N+ H+ HTG+KPF C IC ++ L HI GE+P+ CD+CG F
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTR 78
Query: 2014 KKHFSVHIR 2022
+H +H+R
Sbjct: 79 DRHTKIHLR 87
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ H + TG K F+C C + + + L +HI HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH---IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Query: 1380 GNKPYHCQICKESFYTLKT 1398
G KP+ C IC F TL T
Sbjct: 59 GEKPFACDICGRKFATLHT 77
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ + LD H + H K ++C C + F L++H+ H
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTG-------QKPFQCRICMRNFSQHTGLNQHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F + + RH KIH
Sbjct: 58 TGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + H+R +H +K F+C +C + F L H + H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF + + H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F +K +L H+ G K C++C L +H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F + ++ H G K C++C + +H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ + H+R +H+ K + C IC + F+ + L+ H ++H
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG------ 59
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIH 656
+K + CD C +KF + H IH
Sbjct: 60 -EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S ++ H+R +H+ QK + C +C + F+ + ++QH +H G
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF + H H K
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F TL D H K H
Sbjct: 30 TGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ K L HI HTG + CRIC + F GL +HI
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR---------------- 55
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
+H C C R F+T + H + +H+
Sbjct: 56 ---THTGEKPFACDICGRKFATLHTRDRH-TKIHL 86
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F K+ L HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F + L +H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S + H+R QK + C +C + F+ ++QH +H G +
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF H H K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S K NL HI G++P++C +C +F + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 32/98 (32%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F K L H+ IHTG K QC +C F L++H++ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT--- 58
Query: 689 SKMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICG 726
G K C ICG
Sbjct: 59 ---------------------------GEKPFACDICG 69
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + H ++ +C C R F+ L +HI HTG
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI--HTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F + RH I R KD
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + + L + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F + + +H
Sbjct: 68 CGRKFATLHTRDRH 81
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 1292 VASGSK--DCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTS 1337
+ +G K C +C + +S + +H+R HT +K + CDICG++F +
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFAT 74
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F +L H + +H G KP +C C R F + HI++H G + C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTG-QKP----FQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F K + HI+ H G + C IC + F GE P +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF---SQHTGLNQHIRTHTGEKP----FA 64
Query: 1924 CDLCSKVF 1931
CD+C + F
Sbjct: 65 CDICGRKF 72
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F T L H+R+ H G++ CR+C +FS +H P F C
Sbjct: 12 CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F H +H Q
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQ 88
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats
Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 1446 SGTKKCPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIK 1505
S +CP CHK + + +++H R+ +K + C CGK + + +H+A + +
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN---CMN 61
Query: 1506 TIQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHL 1558
++ F C C++ F R +L+ H+ +HTG PY+C C++ F +++ + H+
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 57/134 (42%), Gaps = 30/134 (22%)
Query: 966 ECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIKGNLQKHMLSHTGEKPFCCHICG 1025
EC CHK FL K L VH K HTGEKPF C CG
Sbjct: 9 ECPTCHKKFLSKYYLK-----VHNRK---------------------HTGEKPFECPKCG 42
Query: 1026 KSL--KGNLKDHILK--CHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQ 1081
K K NL +H + + E+ + C VC +F+ + L +HM H GE PY C C Q
Sbjct: 43 KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Query: 1082 TFAARSTFTFHLKK 1095
F + H+ K
Sbjct: 103 QFMQKKDLQSHMIK 116
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 1293 ASGSKDCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKA--CVHS 1350
S +CP CHK + + ++ H R+ HT +K + C CGK + + H+A C++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 1351 STGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRH 1406
S F C C++ +RR+ +L+ H+ HTG PY C C + F K DL+ H
Sbjct: 63 SE-QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK----DLQSH 113
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 903 ECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKPE 962
EC C KF SK +L H HTG KP++C C K + K +L H+ + E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK----ENLLEHEARNCMNRSE 64
Query: 963 DIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIKGNLQKHMLSHTGEKPFCCH 1022
+ C +C +TF + + L+ HM+SHTGE P+ C
Sbjct: 65 QVFTCSVCQETF--------------------------RRRMELRLHMVSHTGEMPYKCS 98
Query: 1023 ICGKSL--KGNLKDHILKCHTG 1042
C + K +L+ H++K H+G
Sbjct: 99 SCSQQFMQKKDLQSHMIKLHSG 120
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 840 DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIE 899
+CP CHK + + ++ H R+ H+ +K + C CGK + + +H+A + + E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARN---CMNRSE 64
Query: 900 RKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDL 949
+ F C C+ F+ + L H+ +HTG PY+C C + F K+ Q +
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNY-AHSRDRQK 428
+CP C K F + +++VH R H G E+ F C CGK + + H+ +R Q
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTG-EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 429 MECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRH 480
C C+ F + L H+ +HTG Y C C + F+ L+ H++ H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 34/153 (22%)
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQL 1409
SS + EC C KK+ K+ LK H KHTG KP+ C C + ++ R E L
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF----------RKENL 51
Query: 1410 AEQSDEMHSTSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLR 1469
E H N+ +E V + C VC +T+ ++R+H+
Sbjct: 52 LE-----HEARNCMNR---------------SEQVFT----CSVCQETFRRRMELRLHMV 87
Query: 1470 EAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFG 1502
+ Y C C +QF + H H G
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 1512 ECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPE 1571
EC C KKF + L+ H HTG KP++C C K + + N L H+ + E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN----LLEHEARNCMNRSE 64
Query: 1572 DIHECKICHKIFLENSRLTRHMNFTHGDKCHGATNSTDKIFRDADSIVH 1620
+ C +C + F L HM G+ + ++ + + + D H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
+G +C C F K+YL VH RKH GEKP+ C CG+ + + L +HE
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN----LLEHEARN 58
Query: 1101 SVDFDEIVESRTV 1113
++ E V + +V
Sbjct: 59 CMNRSEQVFTCSV 71
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 566 ATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETV 625
+ +CP C K F + +++H R H+ K + C CGK + L H +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEA--RNCM 60
Query: 626 KRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHL-KIH 684
R E+ + C C + F + L HM+ HTG ++C C+ F + L H+ K+H
Sbjct: 61 NRSEQV--FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 601 CDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
C C K+F + YL +H + H +K +EC C K ++ K L EH + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTG-------EKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 661 EHQ---CHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGG 717
Q C VC F L H+ H YKC CS+ F + +++ H H G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSH--TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 689 SKMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELEEKEDSSFERKKS 748
S +CP C K F Y +K H G K C CG L E E + +S
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC-MNRS 63
Query: 749 KDSFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIHFTP 808
+ F C C + FR R H+ V +KC CS +F L+ H+ K+H P
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHM--VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 1479 CDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
C C K+F S + H H G ++ FEC C K ++R +L EH + N+
Sbjct: 10 CPTCHKKFLSKYYLKVHN-RKHTG-----EKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 1539 YQ---CQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTRHMNF 1595
Q C +C ++F R RLH+ H G++ ++C C + F++ L HM
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH---TGEMP----YKCSSCSQQFMQKKDLQSHMIK 116
Query: 1596 THGDKCHG 1603
H G
Sbjct: 117 LHSGPSSG 124
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 635 ECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNES-KMYK 693
EC +C+KKF SK L H HTG K +C C ++ +L H + N S +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 694 CPVCSKMFTELYEMKRHRDHKHGGKCHVCKIC 725
C VC + F E++ H G + C C
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 423 SRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSR--H 480
S +EC C +KF K YL H HTG + C C K + L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 481 KDTDVVILNEVKDIF----------PSHLQSYQIKCRYCARTFSTQNDLKEHVSSVH 527
+ V + ++ F SH KC C++ F + DL+ H+ +H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
Query: 1858 NMECDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIP 1917
+EC C +KF SK + H + H G + CP C K +
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS--- 63
Query: 1918 LEDTYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIKGNMKRHMLSHTGEKPFC 1977
E + C +C + F + + ++ HM+SHTGE P+
Sbjct: 64 -EQVFTCSVCQETF--------------------------RRRMELRLHMVSHTGEMPYK 96
Query: 1978 CDICGKSL--KGNLKAHILR 1995
C C + K +L++H+++
Sbjct: 97 CSSCSQQFMQKKDLQSHMIK 116
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 32/141 (22%)
Query: 1883 GVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYLCDLCSKVFLEHKDMIRHRE 1942
G + CP C K F++ GE P E C C K + ++++ H
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKH---TGEKPFE----CPKCGKCYFRKENLLEH-- 54
Query: 1943 WVHGDKCHVCKVCGAKIKGNMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQGER 2000
+ + M R E+ F C +C ++ + L+ H++ GE
Sbjct: 55 ---------------EARNCMNR------SEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 2001 PYKCDVCGSSFKDKKHFSVHI 2021
PYKC C F KK H+
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHM 114
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 1952 CKVCGAKI--KGNMKRHMLSHTGEKPFCCDICGKSL--KGNLKAHILR-C--QGERPYKC 2004
C C K K +K H HTGEKPF C CGK K NL H R C + E+ + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 2005 DVCGSSFKDKKHFSVHIRNH 2024
VC +F+ + +H+ +H
Sbjct: 70 SVCQETFRRRMELRLHMVSH 89
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 1721 ASKSKECPVCHKTSMESSSSDINKQTFPKTSKTSTSENENHKPSCGNSFMVHKNQPIDTG 1780
S ECP CHK ++K ++ T E P CG + +N
Sbjct: 4 GSSGVECPTCHK-------KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56
Query: 1781 DFSLEQWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSL 1840
+ + Q+ C VC + + + +R H+ H + +KC C +QF + L
Sbjct: 57 RNCMNRSEQVFT-----CSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDL 110
Query: 1841 QCHKQFVHLG 1850
Q H +H G
Sbjct: 111 QSHMIKLHSG 120
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 104 TCRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKG 157
TC +C E F LR HM V H GE C C F K + H H G
Sbjct: 68 TCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1298 DCPVCHKTYSTPKTMRRHLRQ--VHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGN- 1354
+CP C K Y + + H + ++ S++ + C +C + F + +H S TG
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV---SHTGEM 93
Query: 1355 KFECIYCKKKYRRKFDLKEHINK-HTG 1380
++C C +++ +K DL+ H+ K H+G
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S G+L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ + +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 1961 GNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDK 2014
G++ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 2015 KHFSVHIRN 2023
+H +H+R
Sbjct: 80 RHTKIHLRQ 88
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ + +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F +L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ ++ +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF +E H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F + GSL +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S ++ RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNK 1382
F C C +K+ R + K H H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F + + RH G K C++C ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ + + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S S+ +H+R +H+ QK + C +C + F+ ++ ++ H +H G
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF H H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S + H+R QK + C +C + F+ ++ ++ H +H G +
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF R+ + + H H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F ++ +RH I R KD
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ + H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIH 656
+K + CD C +KF H IH
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S G+L HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S SL H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 432 DYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEV 491
+ C R+F+ L HI HTG + CRIC + F ++ L HI +
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT------------- 56
Query: 492 KDIFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
H C C R F+ ++ K H + +H+
Sbjct: 57 ------HTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + + L + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F L+ HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 1862 DYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDT 1921
+ C R+F +T HI+ H G + C IC + F GE P
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP---- 62
Query: 1922 YLCDLCSKVFLEHKDMIRH 1940
+ CD+C + F + RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 557 SLEEYQQI-VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLD 615
SL + +I K QC IC + F+ + H+R H+ K + CDICG++F
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERK 79
Query: 616 LHRKSH 621
H K H
Sbjct: 80 RHTKIH 85
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQ 88
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSQSGSLTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 667 CNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICG 726
C+ F SL+RH++IH K ++C +C + F+ + H G K C ICG
Sbjct: 12 CDRRFSQSGSLTRHIRIH--TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 995 CKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSL--KGNLKDHILKCHTGERPYKCDV 1050
CK+CG K L H+L H+ +P+ C CGK K ++K H HTGE+P+KC V
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQV 62
Query: 1051 CGSSFKDKWYLGVHMRKHNG 1070
CG +F L H RKH G
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 1477 YACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGN 1536
+ C +CGK F ++ +S H +I + R + C +C K+F++ D+++H HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 1537 KPYQCQICNKSFGTRRNYRLHLKRH 1561
KP++CQ+C K+F N H ++H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 1019 FCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNC 1076
F C ICGKS K L H+L H+ RPY C CG F K + H H GEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 1077 DYCGQTFAARSTFTFHLKKH 1096
CG+ F+ S H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 1952 CKVCGAKIK--GNMKRHMLSHTGEKPFCCDICGKSL--KGNLKAHILRCQGERPYKCDVC 2007
CK+CG K + H+L H+ +P+ C CGK K ++K H GE+P+KC VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 2008 GSSFKDKKHFSVHIRNH 2024
G +F + H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 599 YMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTG 658
+ C ICGK F S L H H++T + Y C C K+F K + +H IHTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT-------RPYPCQYCGKRFHQKSDMKKHTFIHTG 54
Query: 659 IKEHQCHVCNTAFYHIRSLSRHLKIH 684
K H+C VC AF +L H + H
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 1326 YLCDICGKQFTSTNRVNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYH 1385
+ C ICGK F ++ ++ H +HS T + C YC K++ +K D+K+H HTG KP+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDT-RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 1386 CQICKESF 1393
CQ+C ++F
Sbjct: 60 CQVCGKAF 67
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 868 YVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGN 927
+ C +CGK F ++ +S H +I + R + C YC +F KS + +H HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 928 KPYQCQICKKSFAN 941
KP++CQ+C K+F+
Sbjct: 56 KPHKCQVCGKAFSQ 69
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 902 FECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKP 961
F+C C FK S LS H+ H+ +PY CQ C K F K D+K+H + KP
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK----SDMKKHTFIHTGEKP 57
Query: 962 EDIHECKICHKTFLEKGSLAKH 983
H+C++C K F + +L H
Sbjct: 58 ---HKCQVCGKAFSQSSNLITH 76
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1511 FECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKP 1570
F+C C K F R+ L H+ H+ +PY CQ C K F + + + H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-------G 54
Query: 1571 EDIHECKICHKIFLENSRLTRH 1592
E H+C++C K F ++S L H
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITH 76
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 634 YECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYK 693
++C C K F LS H++IH+ + + C C F+ + +H IH K +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--TGEKPHK 59
Query: 694 CPVCSKMFTELYEMKRHRDHKHGG 717
C VC K F++ + H KH G
Sbjct: 60 CQVCGKAFSQSSNLITH-SRKHTG 82
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 838 SKDCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKT 897
S DC +C K++ ++ HL +HS + Y C CGK+F + + +H I T
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHT------FIHT 53
Query: 898 IERKFECDYCKMKFKSKSFLSEHINTHTG 926
E+ +C C F S L H HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1921 TYLCDLCSKVFLEHKDMIRHREWVHGD-KCHVCKVCGAKI--KGNMKRHMLSHTGEKPFC 1977
++ C +C K F + H +H D + + C+ CG + K +MK+H HTGEKP
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 1978 CDICGKSL--KGNLKAH 1992
C +CGK+ NL H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 399 FICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYG 458
F C ICGK F + S H HS D + C YC ++F K + +H HTG +
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHS-DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 459 CRICKKTFLYTNGLRRH 475
C++C K F ++ L H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 664 CHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCK 723
C +C +F +LS HL IH ++++ Y C C K F + +MK+H G K H C+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIH--SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 724 ICGATIKLFTEL 735
+CG + L
Sbjct: 62 VCGKAFSQSSNL 73
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1825 FKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGV 1884
F C +C K FK S +L HL +H C YC ++F K+++ H H G
Sbjct: 2 FDCKICGKSFKRSSTLS-----THLLIHSDT-RPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 1885 RDILCPICKKGF 1896
+ C +C K F
Sbjct: 56 KPHKCQVCGKAF 67
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 1798 CPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFL 1857
C +C K + T+ HL +H + + C C K+F ++ H F+H G KP
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTG-EKPH-- 58
Query: 1858 NMECDYCSRKFPSKNEVTNHIKSHMG 1883
+C C + F + + H + H G
Sbjct: 59 --KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRH 1406
F+C C K ++R L H+ H+ +PY CQ C + F+ + D+K+H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQ----KSDMKKH 48
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1976 FCCDICGKSLK--GNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
F C ICGKS K L H+L RPY C CG F K H H +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1922 YLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTG 1972
Y C C K F + DM +H G+K H C+VCG N+ H HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSF 164
C+IC + F+ + L H+ + H + PC+ C F K KKH + H G
Sbjct: 4 CKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGE---KPH 58
Query: 165 TCPICQKIFKNKEWYLDHLSLH 186
C +C K F + H H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQKME 430
C +C K F + + HL +H+ R + C CGK+F +H + H+ ++ +
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHS-DTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPH-K 59
Query: 431 CDYCKRKFTCKRYLAEHINAHTG 453
C C + F+ L H HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 567 TKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHN 622
T+ C C K F M+ H +H+ K + C +CGK F+ S L H + H
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 751 SFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHV 801
SF C CGK F+ + H+ +H + T+ + C C RF + +KKH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSD-TRPYPCQYCGKRFHQKSDMKKHT 49
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S NL HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ ++ +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 1961 GNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDK 2014
N+ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 2015 KHFSVHIRN 2023
+H +H+R
Sbjct: 80 RHTKIHLRQ 88
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ ++ +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF +E H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F + ++ RH G K C++C ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNK 1382
F C C +K+ R + K H H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F + +L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S + H+R QK + C +C + F+ ++ ++ H +H G +
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF R+ + + H H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F ++ +RH I R KD
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S ++ +H+R +H+ QK + C +C + F+ ++ ++ H +H G
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF H H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ + H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIHTGIKE 661
+K + CD C +KF H IH K+
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F S L+ HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S NL HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ S L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ L HI HTG + CRIC + F ++ L HI +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--------------- 56
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
H C C R F+ ++ K H + +H+
Sbjct: 57 ----HTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + + + L + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S +L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F + +T HI+ H G + C IC + F GE P +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP----FA 64
Query: 1924 CDLCSKVFLEHKDMIRH 1940
CD+C + F + RH
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F + + L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQ 88
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSDSSNLTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S +L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ + +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 1961 GNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDK 2014
++ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 2015 KHFSVHIRN 2023
+H +H+R
Sbjct: 80 RHTKIHLRQ 88
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ + +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF +E H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F D+ RH G K C++C ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNK 1382
F C C +K+ R + K H H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ + + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S + H+R QK + C +C + F+ ++ ++ H +H G +
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF R+ + + H H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S + +H+R +H+ QK + C +C + F+ ++ ++ H +H G
Sbjct: 7 CPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF H H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F ++ +RH I R KD
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ + H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIHTGIKE 661
+K + CD C +KF H IH K+
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S +L HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F + L+ HI HTG KP+Q
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ------------------------ 36
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
C+IC + F L H+ G+K C +CG K
Sbjct: 37 -----------CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ + L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ L HI HTG + CRIC + F ++ L HI +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--------------- 56
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
H C C R F+ ++ K H + +H+
Sbjct: 57 ----HTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + +L + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSRSADLTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F ++T HI+ H G + C IC + F GE P +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP----FA 64
Query: 1924 CDLCSKVFLEHKDMIRH 1940
CD+C + F + RH
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQ 88
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 37/96 (38%)
Query: 1507 IQRKFEC--DFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRS 1564
++R + C + C ++F R+ DL HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC----------------------- 37
Query: 1565 AGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
+IC + F + LT H+ G+K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEK 61
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSRSADLTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ + +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 1961 GNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDK 2014
+ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K
Sbjct: 20 AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 2015 KHFSVHIRN 2023
+H +H+R
Sbjct: 80 RHTKIHLRQ 88
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ + +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF +E H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F ++ RH G K C++C ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNK 1382
F C C +K+ R + K H H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ + + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S ++ H+R QK + C +C + F+ ++ ++ H +H G +
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF R+ + + H H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F ++ +RH I R KD
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ ++ H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIHTGIKE 661
+K + CD C +KF H IH K+
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S + +H+R +H+ QK + C +C + F+ ++ ++ H +H G
Sbjct: 7 CPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF H H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + EL + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 432 DYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEV 491
+ C R+F+ L HI HTG + CRIC + F ++ L HI +
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT------------- 56
Query: 492 KDIFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
H C C R F+ ++ K H + +H+
Sbjct: 57 ------HTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ + L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F + L+ HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S L HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 1862 DYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDT 1921
+ C R+F E+T HI+ H G + C IC + F GE P
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP---- 62
Query: 1922 YLCDLCSKVFLEHKDMIRH 1940
+ CD+C + F + RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSRSAELTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQ 88
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F + RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSRSAELTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 37/96 (38%)
Query: 1507 IQRKFEC--DFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRS 1564
++R + C + C ++F R+ +L HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC----------------------- 37
Query: 1565 AGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
+IC + F + LT H+ G+K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEK 61
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ ++ +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 1963 MKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDKKH 2016
+ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K+H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 2017 FSVHIRN 2023
+H+R
Sbjct: 82 TKIHLRQ 88
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ ++ +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRD 1886
KP CD C RKF +E H K H+ +D
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1918 LEDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGE 1973
+E Y C + C + F ++ RH G K C++C ++ H+ +HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1974 KPFCCDICGKSL 1985
KPF CDICG+
Sbjct: 61 KPFACDICGRKF 72
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNK 1382
F C C +K+ R + K H H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 1451 CPV--CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQ 1508
CPV C + +S ++ H+R QK + C +C + F+ ++ ++ H +H G +
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG-----E 60
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNK 1537
+ F CD C +KF R+ + + H H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ ++ H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIHTGIKE 661
+K + CD C +KF H IH K+
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTI 898
CPV C + +S + +H+R +H+ QK + C +C + F+ ++ ++ H +H G
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTG----- 59
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNK 928
E+ F CD C KF H H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH--ILSRHKD 482
+ C IC + F ++ +RH I R KD
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + +EL + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ L HI HTG + CRIC + F ++ L HI +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--------------- 56
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
H C C R F+ ++ K H + +H+
Sbjct: 57 ----HTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F +E+T HI+ H G + C IC + F GE P +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP----FA 64
Query: 1924 CDLCSKVFLEHKDMIRH 1940
CD+C + F + RH
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 37/107 (34%)
Query: 898 IERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
+ER + C + C +F L+ HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC----------------------- 37
Query: 956 AGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S L HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F ++ RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSRSDELTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQ 88
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 37/96 (38%)
Query: 1507 IQRKFEC--DFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRS 1564
++R + C + C ++F R+ +L HI HTG KP+QC
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC----------------------- 37
Query: 1565 AGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
+IC + F + LT H+ G+K
Sbjct: 38 ------------RICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ ++ +++H I T Q+ F+C C + F R+ L HI
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 55 THTGEKPFACDICGRKFARSDERKRHTKIHLR 86
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 1963 MKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDKKH 2016
+ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K+H
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Query: 2017 FSVHIRN 2023
+H+R
Sbjct: 81 TKIHLRQ 87
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ ++ +++H I T ++ F+C C F L+ HI
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 55 THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 58
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 59 EKPFACDICGRKFARSDERKRH 80
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 58
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHM 1882
KP CD C RKF +E H K H+
Sbjct: 59 -EKP----FACDICGRKFARSDERKRHTKIHL 85
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1919 EDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEK 1974
E Y C + C + F ++ RH G K C++C ++ H+ +HTGEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 1975 PFCCDICGKSL 1985
PF CDICG+
Sbjct: 61 PFACDICGRKF 71
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 6 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 61
Query: 1356 FECIYCKKKYRRKFDLKEHINKH 1378
F C C +K+ R + K H H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ + H + TG K F+C C + + R L HI HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 58 GEKPFACDICGRKF 71
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 1028 L 1028
Sbjct: 71 F 71
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ ++ H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 6 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 57
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIH 656
+K + CD C +KF H IH
Sbjct: 58 GEKPFACDICGRKFARSDERKRHTKIH 84
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Query: 454 NTIYGCRICKKTFLYTNGLRRH 475
+ C IC + F ++ +RH
Sbjct: 59 EKPFACDICGRKFARSDERKRH 80
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 35 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 80
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + +EL + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 67 CGRKFARSDERKRH 80
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F +E+T HI+ H G + C IC + F GE P +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP----FA 63
Query: 1924 CDLCSKVFLEHKDMIRH 1940
CD+C + F + RH
Sbjct: 64 CDICGRKFARSDERKRH 80
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ L HI HTG + CRIC + F ++ L HI
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---------------- 54
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
+H C C R F+ ++ K H + +H+
Sbjct: 55 ---THTGEKPFACDICGRKFARSDERKRH-TKIHL 85
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ L H + H K ++C C + F L+ H+ H
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 56
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 57 TGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S L HI G++P++C +C +F H + HIR H +K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 37/106 (34%)
Query: 899 ERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLA 956
ER + C + C +F L+ HI HTG KP+QC
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 36
Query: 957 GQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 37 -----------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 71
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 65 DICGRKF 71
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 819 PLDTGDYTLEQWNELV------TAQSK-DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCD 871
P+++ D + +EL T Q C +C + +S + H+R H+ +K + CD
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACD 65
Query: 872 MCGKQFTSNNRVSQH 886
+CG++F ++ +H
Sbjct: 66 ICGRKFARSDERKRH 80
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 29 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F ++ RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 9 ESCDRRFSRSDELTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 61
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 62 FACDICGRKFARSDERKRHTK 82
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 11 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 65
Query: 168 ICQKIFKNKEWYLDHLSLHEEQ 189
IC + F + H +H Q
Sbjct: 66 ICGRKFARSDERKRHTKIHLRQ 87
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 371 CPL--CTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQK 428
CP+ C + F+ + + H+R +H G ++ F C IC + F+ + H + H H+ + +
Sbjct: 6 CPVESCDRRFSRSDELTRHIR-IHTG-QKPFQCRICMRNFSRSDHLTTHIR-THTGE-KP 61
Query: 429 MECDYCKRKFT 439
CD C RKF
Sbjct: 62 FACDICGRKFA 72
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 36 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 80
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 37/95 (38%)
Query: 1508 QRKFEC--DFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSA 1565
+R + C + C ++F R+ +L HI HTG KP+QC
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 36
Query: 1566 GQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
+IC + F + LT H+ G+K
Sbjct: 37 -----------RICMRNFSRSDHLTTHIRTHTGEK 60
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268-
Dna Complex At 2.1 Angstroms
Length = 87
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1016 EKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+P+ C + C + S L HI + HTG++P++C +C +F +L H+R H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKH 1096
KP+ CD CG+ FA H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++ YAC V C ++F+ ++ +++H I T Q+ F+C C + F R+ L HI
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
THTG KP+ C IC + F + H K H R
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 865 QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
++ Y C + C ++F+ ++ +++H I T ++ F+C C F L+ HI
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRH 952
THTG KP+ C IC + FA +R K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 1963 MKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF----KDKKH 2016
+ RH+ HTG+KPF C IC + S +L HI GE+P+ CD+CG F + K+H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 2017 FSVHIR 2022
+H+R
Sbjct: 82 TKIHLR 87
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 631 DKKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNE 688
++ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 689 SKMYKCPVCSKMFTELYEMKRH 710
K + C +C + F E KRH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1793 EKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
E+ CPV C++ ++ + +H+R +H +K F+C +C + F S L H + H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR-THTG 59
Query: 1851 VHKPKFLNMECDYCSRKFPSKNEVTNHIKSHM 1882
KP CD C RKF +E H K H+
Sbjct: 60 -EKP----FACDICGRKFARSDERKRHTKIHL 86
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1919 EDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEK 1974
E Y C + C + F ++ RH G K C++C ++ H+ +HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1975 PFCCDICGKSL 1985
PF CDICG+
Sbjct: 62 PFACDICGRKF 72
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK- 1355
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H + + TG K
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKP 62
Query: 1356 FECIYCKKKYRRKFDLKEHINKH 1378
F C C +K+ R + K H H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1323 QKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHT 1379
++ Y C + C ++F+ ++ + H + TG K F+C C + + R L HI HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 1380 GNKPYHCQICKESF 1393
G KP+ C IC F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKS 1027
C + F L +H+ G K C++C +L H+ +HTGEKPF C ICG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 1028 L 1028
Sbjct: 72 F 72
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 572 CPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKE 629
CP+ C++ F+ ++ H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------- 58
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIH 656
+K + CD C +KF H IH
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 396 ERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTG 453
ER + C + C ++F+ + +RH H+ ++ +C C R F+ +L HI HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI-HT-GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 454 NTIYGCRICKKTFLYTNGLRRH 475
+ C IC + F ++ +RH
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1429 PLDTGDLSWEEWNEL-----VLSGTK--KCPVCHKTYSTPRQMRIHLREAHSQKKYACDV 1481
P+++ D + +EL + +G K +C +C + +S + H+R +K +ACD+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 1482 CGKQFTSTNRVSQH 1495
CG++F ++ +H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRH 81
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 1864 CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAXXXXXXXXXXXXXXAGEIPLEDTYL 1923
C R+F +E+T HI+ H G + C IC + F GE P +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF---SRSDHLTTHIRTHTGEKP----FA 64
Query: 1924 CDLCSKVFLEHKDMIRH 1940
CD+C + F + RH
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C R+F+ L HI HTG + CRIC + F ++ L HI
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR---------------- 55
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHM 528
+H C C R F+ ++ K H + +H+
Sbjct: 56 ---THTGEKPFACDICGRKFARSDERKRH-TKIHL 86
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
Y C + C ++F+ L H + H K ++C C + F L+ H+ H
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
TG K C +C F RH KIH
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1973 EKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+ C + C + S L HI G++P++C +C +F H + HIR H +K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1830 CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGVRDILC 1889
C ++F S L H + +H G KP +C C R F + +T HI++H G + C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTG-QKP----FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 1890 PICKKGF 1896
IC + F
Sbjct: 66 DICGRKF 72
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 819 PLDTGDYTLEQWNELV------TAQSK-DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCD 871
P+++ D + +EL T Q C +C + +S + H+R H+ +K + CD
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACD 66
Query: 872 MCGKQFTSNNRVSQH 886
+CG++F ++ +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 37/106 (34%)
Query: 899 ERKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLA 956
ER + C + C +F L+ HI HTG KP+QC
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC------------------------ 37
Query: 957 GQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI 1002
+IC + F L H+ G+K C +CG K
Sbjct: 38 -----------RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 565 VATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
K QC IC + F+ + H+R H+ K + CDICG++F H K H
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYT 318
++CD+ F ++ RH IR+H K F+C IC+ +F L THI RT E
Sbjct: 10 ESCDRRFSRSDELTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHI----RTHTGE-KP 62
Query: 319 FECQHCEDKFSTPFELNKHNE 339
F C C KF+ E +H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L RH+R+ H G++ CR+C +FS H P F C
Sbjct: 12 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACD 66
Query: 168 ICQKIFKNKEWYLDHLSLH 186
IC + F + H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKH 150
CRIC F L H+R H GE+ C +C F+ ++K+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 371 CPL--CTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQK 428
CP+ C + F+ + + H+R +H G ++ F C IC + F+ + H + H H+ + +
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTG-QKPFQCRICMRNFSRSDHLTTHIR-THTGE-KP 62
Query: 429 MECDYCKRKFT 439
CD C RKF
Sbjct: 63 FACDICGRKFA 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 1014 TGEKPFCCHICGKSLK-GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
+G+K + C CGKS + +D + H G RPY C VCG FK K +L HM+ H G K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 1073 PYNCDYCGQTFAARSTFTFHL 1093
PY C+ C + F R +F H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 863 SSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
S K Y C CGK FT ++ +H + H G+ R + C C KFK K L H+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGL-----RPYGCGVCGKKFKMKHHLVGHMK 58
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDL 949
HTG KPY+C IC K F + S+ R +
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1475 KKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHT 1534
K Y C CGK FT ++ +H + H G+ R + C C KKF L H+ HT
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGL-----RPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 1535 GNKPYQCQICNKSFGTRRNYRLHL 1558
G KPY+C IC K F R ++ H+
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHV 85
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 594 SSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHM 653
S K Y C CGK FT S D H H + Y C C KKF K L HM
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-------RPYGCGVCGKKFKMKHHLVGHM 57
Query: 654 IIHTGIKEHQCHVCNTAFYHIRSLSRHL 681
IHTGIK ++C++C F S RH+
Sbjct: 58 KIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 404 CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICK 463
CGK FT RH + + C C +KF K +L H+ HTG Y C IC
Sbjct: 15 CGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 464 KTFLYTNGLRRHILS 478
K F++ + RH+ S
Sbjct: 73 KRFMWRDSFHRHVTS 87
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 1946 GDKCHVCKVCGAKI--KGNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERP 2001
GDK + C+ CG K RHM H G +P+ C +CGK +K +L H+ G +P
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 2002 YKCDVCGSSFKDKKHFSVHI 2021
Y+C++C F + F H+
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESK 690
DK Y C C K F K HM +H G++ + C VC F L H+KIH K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--TGIK 64
Query: 691 MYKCPVCSKMFTELYEMKRH 710
Y+C +C+K F RH
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 1516 CKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHE 1575
C K F H++ H G +PY C +C K F + + H+K H +KP +E
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT----GIKP---YE 67
Query: 1576 CKICHKIFLENSRLTRHMN 1594
C IC K F+ RH+
Sbjct: 68 CNICAKRFMWRDSFHRHVT 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 1321 TSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINKHTG 1380
+ K Y C CGK FT ++ + H + +H + C C KK++ K L H+ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 1381 NKPYHCQICKESFYTLKTYRGDLKRHEQLAEQSDE 1415
KPY C IC + F +R RH +S E
Sbjct: 63 IKPYECNICAKRF----MWRDSFHRHVTSCTKSYE 93
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 907 CKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKPEDIHE 966
C F KS H++ H G +PY C +C K F K L H ++ +KP +E
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK----HHLVGHMKIHTGIKP---YE 67
Query: 967 CKICHKTFLEKGSLAKHMN 985
C IC K F+ + S +H+
Sbjct: 68 CNICAKRFMWRDSFHRHVT 86
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 970 CHKTFLEKGSLAKHMNWVHGDKCHICKVCGAK--IKGNLQKHMLSHTGEKPFCCHICGKS 1027
C K+F K +HM+ G + + C VCG K +K +L HM HTG KP+ C+IC K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 1028 L--KGNLKDHILKC 1039
+ + H+ C
Sbjct: 75 FMWRDSFHRHVTSC 88
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+G++ Y C CG SF K HM H G +PY C CG+ F + H+K H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 575 CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKY 634
C K F Q H+ +H ++ Y C +CGK+F +L H K H K Y
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-------KPY 66
Query: 635 ECDSCNKKFWSKRALSEHM 653
EC+ C K+F + + H+
Sbjct: 67 ECNICAKRFMWRDSFHRHV 85
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 1922 YLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIKGNMKRHMLS----HTGEKPFC 1977
Y C C K F RH G + + C VCG K K MK H++ HTG KP+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK--MKHHLVGHMKIHTGIKPYE 67
Query: 1978 CDICGKSL--KGNLKAHILRC 1996
C+IC K + + H+ C
Sbjct: 68 CNICAKRFMWRDSFHRHVTSC 88
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1971 TGEKPFCCDICGKSL--KGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
+G+K + C CGKS K H+ G RPY C VCG FK K H H++ H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 1446 SGTKKCPV-CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGII 1504
SG K P C K+++ Q H+ + Y C VCGK+F + + H I
Sbjct: 6 SGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK------I 59
Query: 1505 KTIQRKFECDFCKKKFYRNFDLQEHINT 1532
T + +EC+ C K+F H+ +
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 1841 QCHKQFVHLGV---HKPKFLNME---CDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKK 1894
QC K F H H L + C C +KF K+ + H+K H G++ C IC K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 1895 GFI 1897
F+
Sbjct: 74 RFM 76
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 1796 KLCPV-CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKP 1854
KL P C K + +H+ +H+ + + C +C K+FK L H + +H G+ KP
Sbjct: 9 KLYPCQCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGI-KP 65
Query: 1855 KFLNMECDYCSRKFPSKNEVTNHIKS 1880
EC+ C+++F ++ H+ S
Sbjct: 66 ----YECNICAKRFMWRDSFHRHVTS 87
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 128 GEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCPICQKIFKNKEWYLDHLSLH 186
G++ PC+ C SF++K Q+ +H S H G + + C +C K FK K + H+ +H
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMS-MHLG---LRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQL 1409
S+G+K C K + K H++ H G +PY C +C + F G +K H +
Sbjct: 4 GSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKDTDVVILNEVKD 493
C + FT K H++ H G YGC +C K F ++ H++ K I +K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK----MKHHLVGHMK-----IHTGIKP 65
Query: 494 IFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVHMFMTESFE 535
+C CA+ F ++ HV+S T+S+E
Sbjct: 66 Y----------ECNICAKRFMWRDSFHRHVTSC----TKSYE 93
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding
Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
Length = 96
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 1018 PFCCHICGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYN 1075
P C +CGK S K LK H ++CHTG +PYKC C + D L H+R H+ E+P+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 1076 CDYCGQTFAARSTFTFHLKKHEEN 1099
C C S T HL+ H +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 993 HICKVCGA--KIKGNLQKHMLSHTGEKPFCCHIC--GKSLKGNLKDHILKCHTGERPYKC 1048
H C+VCG K L+ HM HTG KP+ C C + +L H L+ H+ ERP+KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 1049 DVCGSSFKDKWYLGVHMRKHNGE 1071
+C + ++ L VH+R H G+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1948 KCHVCKVCGAKIKGNMKRHMLSHTGEKPFCCDIC--GKSLKGNLKAHILRCQGERPYKCD 2005
KC VC C ++ K +K HM HTG KP+ C C + +L H+ ERP+KC
Sbjct: 10 KCEVCGKCFSR-KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 2006 VCGSSFKDKKHFSVHIRNHGED 2027
+C + ++ +VH+R+H D
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 634 YECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYK 693
++C+ C K F K L HM HTG+K ++C C+ A SL++HL+IH ++ + +K
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--SDERPFK 66
Query: 694 CPVC 697
C +C
Sbjct: 67 CQIC 70
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 1512 ECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPE 1571
+C+ C K F R L+ H+ HTG KPY+C+ C+ + + HL+ H E
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-------E 62
Query: 1572 DIHECKICHKIFLENSRLTRHMNFTHGD 1599
+C+IC +S+LT H+ GD
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 957 GQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVC--GAKIKGNLQKHMLSHT 1014
G H+C++C K F K L HM G K + CK C A +L KH+ H+
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 1015 GEKPFCCHICGKSLKGNLKDHI-LKCHTGE 1043
E+PF C IC + + + + + L+ HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 1473 SQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINT 1532
S + C+VCGK F+ +++ H H G+ + ++C C + L +H+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTH-MRCHTGV-----KPYKCKTCDYAAADSSSLNKHLRI 58
Query: 1533 HTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAG 1566
H+ +P++CQIC + +HL+ H +G
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 864 SQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINT 923
S + C++CGK F+ +++ H H G+ + ++C C S L++H+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTH-MRCHTGV-----KPYKCKTCDYAAADSSSLNKHLRI 58
Query: 924 HTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAG 957
H+ +P++CQIC + N L+ H +G
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 601 CDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
C++CGK F+ L H + H K Y+C +C+ +L++H+ IH+ +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGV-------KPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 661 EHQCHVCNTAFYHIRSLSRHLKIH 684
+C +C A + L+ HL+ H
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSH 87
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 1446 SGTKKCPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIK 1505
SG KC VC K +S +++ H+R K Y C C ++ +++H I
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR------IH 59
Query: 1506 TIQRKFECDFCKKKFYRNFDLQEHINTHTGN 1536
+ +R F+C C + L H+ +HTG+
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 903 ECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKPE 962
+C+ C F K L H+ HTG KPY+C+ C + A+ S + L+ H E
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-------E 62
Query: 963 DIHECKICHKTFLEKGSLAKHMNWVHGD 990
+C+IC L H+ GD
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
C VC K +S ++ H+R H+ K Y C C ++ +++H I + ER
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR------IHSDER 63
Query: 901 KFECDYCKMKFKSKSFLSEHINTHTGN 927
F+C C ++ S L+ H+ +HTG+
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 1293 ASGSKDCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSST 1352
+SG C VC K +S ++ H+R HT K Y C C ++ +N H +HS
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE 62
Query: 1353 GNKFECIYCKKKYRRKFDLKEHINKHTGN 1381
F+C C R L H+ HTG+
Sbjct: 63 -RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 571 QCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEE 630
+C +C K F+ +++ H+R H+ +K Y C C S L+ H + H++
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD------- 61
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTG 658
++ ++C C + L+ H+ HTG
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1328 CDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHTGNKPYHC 1386
C++CGK F+ +++ H C TG K ++C C L +H+ H+ +P+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC---HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 1387 QIC 1389
QIC
Sbjct: 68 QIC 70
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 1975 PFCCDICGK--SLKGNLKAHILRCQ-GERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
P C++CGK S K LK H +RC G +PYKC C + D + H+R H +++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQIC 1389
S + +C C K + RK LK H+ HTG KPY C+ C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTC 42
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSF 164
C +C + F L+ HMR H G + C+ CD + ++ KH P F
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP----F 65
Query: 165 TCPICQKIFKNKEWYLDHLSLH 186
C IC +N HL H
Sbjct: 66 KCQICPYASRNSSQLTVHLRSH 87
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 1798 CPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPK-- 1855
C VC K ++ ++ H+R H K +KC C S SL HL +H +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLN-----KHLRIHSDERP 64
Query: 1856 FLNMECDYCSRKFPSKNEVTNHIKSHMG 1883
F C Y SR + +++T H++SH G
Sbjct: 65 FKCQICPYASR---NSSQLTVHLRSHTG 89
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1647 SKGSFKCGICGKCYKTREKCRRHIKRIHLNSRNEPSNMGDYSLEEWNK-NKHEVIESQE 1704
S G KC +CGKC+ ++K + H+ R H + DY+ + + NKH I S E
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1014 TGEKPFCCHICGKSLKG--NLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+G C ICGK + +L H L H+GE+PY C VCG FK K + H+R H+G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 1072 --KPYNCDYCGQTFAARSTFTFHLKK 1095
KPY C CG+ F+ H+K+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
+G C++CG F+D ++L H H+GEKPY+C CG F + ++H++ H+ G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--G 60
Query: 1101 SVDFDEIVES 1110
SV I +S
Sbjct: 61 SVGKPYICQS 70
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 863 SSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
S C++CGK F +++HK SH G E+ + C C ++FK K +S H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHK-LSHSG-----EKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 923 THTG--NKPYQCQICKKSFA 940
+H G KPY CQ C K F+
Sbjct: 57 SHDGSVGKPYICQSCGKGFS 76
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 1951 VCKVCGAKIKG--NMKRHMLSHTGEKPFCCDICGKSL--KGNLKAHILRCQGE--RPYKC 2004
C++CG + ++ RH LSH+GEKP+ C +CG K + H+ G +PY C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 2005 DVCGSSFKDKKHFSVHIR 2022
CG F H + HI+
Sbjct: 69 QSCGKGFSRPDHLNGHIK 86
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1478 ACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTG-- 1535
AC++CGK F +++HK SH G ++ + C C +F R + H+ +H G
Sbjct: 9 ACEICGKIFRDVYHLNRHKL-SHSG-----EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1536 NKPYQCQICNKSFGTRRNYRLHLKR 1560
KPY CQ C K F + H+K+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 687 NESKMYKCPVCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELE---EKEDSSF 743
+ S C +C K+F ++Y + RH+ G K + C +CG K + D S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 744 ERKKSKDSFHCDTCGKYFRSRQICNKHIKRVHLNPT 779
+ + C +CGK F N HIK+VH P+
Sbjct: 63 GKP-----YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1971 TGEKPFCCDICGKSLKG--NLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
+G C+ICGK + +L H L GE+PY C VCG FK K S H+R+H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 1512 ECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPE 1571
C+ C K F + L H +H+G KPY C +C F + H++ H S G KP
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG--KP- 65
Query: 1572 DIHECKICHKIFLENSRLTRHMNFTH 1597
+ C+ C K F L H+ H
Sbjct: 66 --YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 566 ATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETV 625
+ C IC KIF + H + HS K Y C +CG +F + H +SH+ +V
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 626 KRKEEDKKYECDSCNKKFWSKRALSEHM-IIHTG 658
K Y C SC K F L+ H+ +H+G
Sbjct: 63 -----GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 1328 CDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHTG--NKPY 1384
C+ICGK F +N HK S +G K + C C +++RK + H+ H G KPY
Sbjct: 10 CEICGKIFRDVYHLNRHKL---SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 1385 HCQICKESFYTLKTYRGDLKR 1405
CQ C + F G +K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 635 ECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKC 694
C+ C K F L+ H + H+G K + C VC F +S H++ H+ + K Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 695 PVCSKMFTELYEMKRHRDHKHGG 717
C K F+ + H H G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1924 CDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKI--KGNMKRHMLSHTGE--KPFCCD 1979
C++C K+F + + RH+ G+K + C VCG + K M H+ SH G KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 1980 ICGKSLK--GNLKAHI 1993
CGK +L HI
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1293 ASGSKDCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSST 1352
S C +C K + + RH + H+ +K Y C +CG +F +R++ H S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1353 GNKFECIYCKKKYRRKFDLKEHINK-HTG 1380
G + C C K + R L HI + H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 966 ECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKI--KGNLQKHMLSHTGE--KPFCC 1021
C+IC K F + L +H G+K + C VCG + K + H+ SH G KP+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 1022 HICGKSLK--GNLKDHILKCHTG 1042
CGK +L HI + H+G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 1451 CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRK 1510
C +C K + + H +K Y+C VCG +F +R+S H SH G ++ +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDG---SVGKP 65
Query: 1511 FECDFCKKKFYRNFDLQEHI-NTHTG 1535
+ C C K F R L HI H+G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 903 ECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKPE 962
C+ C F+ L+ H +H+G KPY C +C F K ++ H G KP
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG--KP- 65
Query: 963 DIHECKICHKTFLEKGSLAKHMNWVH 988
+ C+ C K F L H+ VH
Sbjct: 66 --YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 104 TCRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPS 163
C IC ++F ++ L RH ++ H GE+ C +C + F K + H + H G P
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKP- 65
Query: 164 FTCPICQKIFKNKEWYLDHLSLHEEQL 190
+ C C K F DHL+ H +Q+
Sbjct: 66 YICQSCGKGFSRP----DHLNGHIKQV 88
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
C +C K + + +H + HS +K Y C +CG +F +R+S H SH G ++ +
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDG---SVGK 64
Query: 901 KFECDYCKMKFKSKSFLSEHI-NTHTG 926
+ C C F L+ HI H+G
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHS 423
CP+C F M H+RS + +IC CGK F+ H + H HS
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 721 VCKICGATIKLFTELEEKEDSSFERKKSKDSFHCDTCGKYFRSRQICNKHIKRVHLNPTK 780
C+ICG + L + S K + C CG F+ + + H++ + K
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP----YSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 781 TFKCDLCSDRFSTSAKLKKHVDKIHFTPE 809
+ C C FS L H+ ++H P
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 35/124 (28%)
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQL 1409
SS + C C K +R + L H H+G KPY C +C F KR +++
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF----------KRKDRM 51
Query: 1410 AEQSDEMHSTSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLR 1469
+ + + KP C C K +S P + H++
Sbjct: 52 S------YHVRSHDGSVGKPY-------------------ICQSCGKGFSRPDHLNGHIK 86
Query: 1470 EAHS 1473
+ HS
Sbjct: 87 QVHS 90
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 423 SRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHKD 482
S + C+ C + F +L H +H+G Y C +C F + + H+ S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 483 TDVVILNEVKDIFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVH 527
+ C+ C + FS + L H+ VH
Sbjct: 62 VGKPYI-----------------CQSCGKGFSRPDHLNGHIKQVH 89
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 1042 GERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
G +C CG F+ +YL +H+R H GEKPY C++C A +++ +HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 903 ECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRH 952
EC YC F+S +L+ H+ THTG KPY+C+ C+ + A K S + L+RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 1512 ECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
EC +C K F N+ L H+ THTG KPY+C+ C + + + R HL+RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 1357 ECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRH 1406
EC YC K +R + L H+ HTG KPY C+ C+ + + R L+RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1021 CHICGKSLKGNLKDHI-LKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHN 1069
C CGK + N +I L+ HTGE+PYKC+ C + K L H+ +H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 430 ECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHK 481
EC YC + F YL H+ HTG Y C C+ LR H+ HK
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 1978 CDICGKSLKGN--LKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
C CGK + N L H+ GE+PYKC+ C + K H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 635 ECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
EC C K F S L+ H+ HTG K ++C C A SL HL+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 754 CDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIH 805
C CGK+FRS N H+ R H K +KC+ C + L+ H+++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHL-RTHTGE-KPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 1946 GDKCHVCKVCGAKIKGN--MKRHMLSHTGEKPFCCDIC--GKSLKGNLKAHILR 1995
G C CG + N + H+ +HTGEKP+ C+ C + K +L+ H+ R
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 989 GDKCHICKVCGAKIKGN--LQKHMLSHTGEKPFCCHIC--GKSLKGNLKDHILKCH 1040
G C CG + N L H+ +HTGEKP+ C C + K +L+ H+ + H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 1328 CDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKH 1378
C CGK F S +NIH + + TG K ++C +C+ +K L+ H+ +H
Sbjct: 7 CSYCGKFFRSNYYLNIH---LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 566 ATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDIC---GKQFTTLSY-LDLHRK 619
+ S++C C K F + + +HLR H+ K Y C+ C Q T+L Y L+ H K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of
Zinc Finger Protein 435
Length = 77
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 31/57 (54%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
R YKCD CG SF L H R H GEKPY CD CG+ F RS H + H +G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSA 1565
+R+++CD C K F + DL +H THTG KPY+C C K+F R + H + H S
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
+RY CD CGK F+ S L HR++H +K Y+CD C K F + L H +H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHT-------GEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 657 TG 658
TG
Sbjct: 70 TG 71
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 900 RKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANK 942
R+++CD C F S LS+H THTG KPY+C C K+F +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1021 CHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
C CGKS +L H + HTGE+PYKCD CG +F + +L H R H G P
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 865 QKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTH 924
+++Y CD CGK F+ ++ +S+H+ T E+ ++CD C F +S L H H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRR------THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 925 TGNKP 929
TG+ P
Sbjct: 70 TGSGP 74
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 1474 QKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTH 1533
+++Y CD CGK F+ ++ +S+H+ T ++ ++CD C K F + L H H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRR------THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 1534 TGNKP 1538
TG+ P
Sbjct: 70 TGSGP 74
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 627 RKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
++ E ++Y+CD C K F LS+H HTG K ++C C AF L H ++H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 1978 CDICGKSLK--GNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
CD CGKS +L H GE+PYKCD CG +F + H H R H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 424 RDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRHK 481
R+R++ +CD C + F+ L++H HTG Y C C K F+ R H++ H+
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI----QRSHLIGHHR 67
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1323 QKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHTGN 1381
++RY CD CGK F+ ++ ++ H+ + TG K ++C C K + ++ L H HTG+
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRR---THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 1382 KP 1383
P
Sbjct: 73 GP 74
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 1355 KFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
+++C C K + DL +H HTG KPY C C ++F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 560 EYQQIVATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRK 619
E+QQ + K C C K F+ + H R H+ K Y CD CGK F S+L H +
Sbjct: 10 EWQQRERRRYK-CDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 620 SHNET 624
H +
Sbjct: 68 VHTGS 72
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 397 RKFICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGN 454
R++ CD CGK F+ + S+H+ H+ ++ +CD C + F + +L H HTG+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEK-PYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 995 CKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSLKGNLKDHIL---KCHTGERP 1045
C CG +L KH +HTGEKP+ C CGK+ + H++ + HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF--IQRSHLIGHHRVHTGSGP 74
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTG 1353
C C K++S + +H R+ HT +K Y CD CGK F + + H VH+ +G
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSG 73
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 26/64 (40%)
Query: 1922 YLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIKGNMKRHMLSHTGEKPFCCDIC 1981
Y CD C K F D+ +HR +HTGEKP+ CD C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR--------------------------THTGEKPYKCDEC 52
Query: 1982 GKSL 1985
GK+
Sbjct: 53 GKAF 56
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQH 886
C C K++S + KH R H+ +K Y CD CGK F + + H
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 1822 KKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSH 1881
++++KCD C K F S L H++ H G KP +CD C + F ++ + H + H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRR-THTGE-KP----YKCDECGKAFIQRSHLIGHHRVH 69
Query: 1882 MG 1883
G
Sbjct: 70 TG 71
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1450 KCPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTS-TNRVSQHKAHSHFG 1502
KC C K++S + H R +K Y CD CGK F ++ + H+ H+ G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1786 QWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQ 1845
+W+Q + K C C K ++ + KH R H +K +KCD C K F L H +
Sbjct: 10 EWQQRERRRYK-CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 1846 FVHLG 1850
VH G
Sbjct: 68 -VHTG 71
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1860 ECDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFI 1897
+CD C + F ++++ H ++H G + C C K FI
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
Length = 119
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 1452 PVCHKTYSTPRQMRIHLREAHSQKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQR 1509
P C+K Y +++H R+ +K Y CD C ++F+ ++++ +H+ H G+ +
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGV-----K 65
Query: 1510 KFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQI--CNKSFG 1549
F+C C++KF R+ L+ H THTG KP+ C+ C K F
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 1004 GNLQKHMLSHTGEKPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKW 1059
+LQ H HTGEKP+ C C + S LK H + HTG +P++C C F
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSD 80
Query: 1060 YLGVHMRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKH 1096
+L H R H GEKP++C + C + FA H H
Sbjct: 81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 594 SSIKRYMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECD--SCNKKFWSKRAL 649
S + +MC C K++ LS+L +H + H +K Y+CD C ++F L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-------EKPYQCDFKDCERRFSRSDQL 54
Query: 650 SEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKR 709
H HTG+K QC C F L H + H + + P C K F E+ R
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 710 H 710
H
Sbjct: 115 H 115
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 842 PVCHKTYSTPKSMRKHLREVHSSQKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIE 899
P C+K Y ++ H R+ H+ +K Y CD C ++F+ ++++ +H+ H G+
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGV----- 64
Query: 900 RKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQI--CKKSFA 940
+ F+C C+ KF L H THTG KP+ C+ C+K FA
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1506 TIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKR 1563
T ++ ++CDF C+++F R+ L+ H HTG KP+QC+ C + F +R + HLK H R
Sbjct: 32 TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF-SRSD---HLKTHTR 87
Query: 1564 SAGQLKPEDIHECKICHKIFLENSRLTRHMN 1594
+ KP C K F + L RH N
Sbjct: 88 THTGEKPFSC-RWPSCQKKFARSDELVRHHN 117
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1300 PVCHKTYSTPKTMRRHLRQVHTSQKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-F 1356
P C+K Y ++ H R+ HT +K Y CD C ++F+ ++++ H+ TG K F
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQR---RHTGVKPF 67
Query: 1357 ECIYCKKKYRRKFDLKEHINKHTGNKPYHCQI--CKESF 1393
+C C++K+ R LK H HTG KP+ C+ C++ F
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 1508 QRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQCQI--CNKSFGTRRNYRLHLKRHKR 1563
+R F C + C K++++ LQ H HTG KPYQC C + F LKRH+R
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ----LKRHQR 59
Query: 1564 SAGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDKCHGAT-NSTDKIFRDADSIV 1619
+KP +CK C + F + L H G+K S K F +D +V
Sbjct: 60 RHTGVKP---FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 372 PLCTKIFTTAKHMRVHLRSVHNGKERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKM 429
P C K + H+++H R H G E+ + CD C ++F+ + RH+ H+ +
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HTG-EKPYQCDFKDCERRFSRSDQLKRHQR-RHT-GVKPF 67
Query: 430 ECDYCKRKFTCKRYLAEHINAHTGNTIYGCRI--CKKTFLYTNGLRRH 475
+C C+RKF+ +L H HTG + CR C+K F ++ L RH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 37/127 (29%)
Query: 899 ERKFECDY--CKMKFKSKSFLSEHINTHTGNKPYQCQI--CKKSFANKRSYQRDLKRHKQ 954
+R F C Y C ++ S L H HTG KPYQC C++ F+ RS Q LKRH++
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFS--RSDQ--LKRHQR 59
Query: 955 LAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIKGNLQKHMLSHT 1014
+KP +CK C + F S + H L+ H +HT
Sbjct: 60 RHTGVKP---FQCKTCQRKF----SRSDH----------------------LKTHTRTHT 90
Query: 1015 GEKPFCC 1021
GEKPF C
Sbjct: 91 GEKPFSC 97
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 1961 GNMKRHMLSHTGEKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKH 2016
+++ H HTGEKP+ CD C + S LK H R G +P++C C F H
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 2017 FSVHIRNHGEDK 2028
H R H +K
Sbjct: 82 LKTHTRTHTGEK 93
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 1919 EDTYLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEK 1974
E Y CD C + F + RH+ G K CK C K ++K H +HTGEK
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 1975 PFCC 1978
PF C
Sbjct: 94 PFSC 97
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 565 VATKSKQCPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHN 622
K QC CE+ F+ Q++ H R H+ +K + C C ++F+ +L H ++H
Sbjct: 32 TGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 623 ETVKRKEEDKKYEC--DSCNKKFWSKRALSEHMIIH 656
+K + C SC KKF L H +H
Sbjct: 91 -------GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 1043 ERPYKCDV--CGSSFKDKWYLGVHMRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKH 1096
+RP+ C C + +L +H RKH GEKPY CD+ C + F+ H ++H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 1321 TSQKR-YLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIY--CKKKYRRKFDLKEH 1374
S+KR ++C C K++ + + +H TG K ++C + C++++ R LK H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSR---KHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Query: 1375 INKHTGNKPYHCQICKESF 1393
+HTG KP+ C+ C+ F
Sbjct: 58 QRRHTGVKPFQCKTCQRKF 76
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGERPYKC 2004
+KRH HTG KPF C C + S +LK H GE+P+ C
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 1302 CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNK-FECIY 1360
C + +S ++RH R+ HT K + C C ++F+ ++ + H + TG K F C +
Sbjct: 44 CERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTH---TRTHTGEKPFSCRW 99
Query: 1361 --CKKKYRRKFDLKEHINKH 1378
C+KK+ R +L H N H
Sbjct: 100 PSCQKKFARSDELVRHHNMH 119
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 39/150 (26%)
Query: 1350 SSTGNKFECIY--CKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHE 1407
+S F C Y C K+Y + L+ H KHTG KPY C D K E
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC---------------DFKDCE 45
Query: 1408 QLAEQSDEMHSTSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIH 1467
+ +SD++ + +K P +C C + +S ++ H
Sbjct: 46 RRFSRSDQLKRHQRRHTGVK-PF-------------------QCKTCQRKFSRSDHLKTH 85
Query: 1468 LREAHSQKKYAC--DVCGKQFTSTNRVSQH 1495
R +K ++C C K+F ++ + +H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 1845 QFVHLGVHKPKFLN---MECDY--CSRKFPSKNEVTNHIKSHMGVRDILCPICKKGFIAX 1899
+ HL +H K +CD+ C R+F +++ H + H GV+ C C++ F
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF--- 76
Query: 1900 XXXXXXXXXXXXXAGEIPLEDTYLCDLCSKVFLEHKDMIRH 1940
GE P + C K F +++RH
Sbjct: 77 SRSDHLKTHTRTHTGEKPFSCRW--PSCQKKFARSDELVRH 115
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 1454 CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFEC 1513
C + +S Q++ H R K + C C ++F+ ++ + H +H G ++ F C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTG-----EKPFSC 97
Query: 1514 DF--CKKKFYRNFDLQEHINTH 1533
+ C+KKF R+ +L H N H
Sbjct: 98 RWPSCQKKFARSDELVRHHNMH 119
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 394 GKERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDY--CKRKFTCKRYLAEHIN 449
++R F+C C K++ H H + H+ ++ +CD+ C+R+F+ L H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQR 59
Query: 450 AHTGNTIYGCRICKKTFLYTNGLRRHI 476
HTG + C+ C++ F ++ L+ H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 1788 RQLVAEKTKLCPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQ 1845
R+ EK C C + ++ +++H R H K F+C CQ++F S L+ H +
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Query: 1846 FVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSH 1881
H G K + C +KF +E+ H H
Sbjct: 88 -THTGE---KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPSFTCP 167
C F L+RH R +H G + C+ C FS K H PF S P
Sbjct: 44 CERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF--SCRWP 100
Query: 168 ICQKIFKNKEWYLDHLSLH 186
CQK F + + H ++H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1016 EKPFCCHICGKSLKG--NLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+K F C CG+ NL H + HT ERPY CD+C +F+ + +L H H+ EKP
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 1074 YNCDYCGQTFAARSTFTFHLKKHEENGS 1101
+ C CG+ F T H H + S
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 1473 SQKKYACDVCGKQFT-STNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
++K++ C CG+ FT S N + + H T +R + CD C K F R L++H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTH-------TDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAG 1566
H+ KP++CQ C K F R +H H +++
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 994 ICKVCGAKIKG--NLQKHMLSHTGEKPFCCHICGKSLK--GNLKDHILKCHTGERPYKCD 1049
ICK CG NL H +HT E+P+ C IC K+ + +L+DH H+ E+P+KC
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQ 77
Query: 1050 VCGSSFKDKWYLGVHMRKH 1068
CG F L VH H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 864 SQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINT 923
++K+++C CG+ FT + + H+ T ER + CD C F+ + L +H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHER------THTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 924 HTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQ 958
H+ KP++CQ C K F R+ L HK L Q
Sbjct: 68 HSKEKPFKCQECGKGFCQSRT----LAVHKTLHMQ 98
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
K ++C CG+ FT L +H ++H + ++ Y CD C+K F + L +H IH
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTD-------ERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 657 TGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNES 689
+ K +C C F R+L+ H +H S
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1951 VCKVCGAKIKG--NMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQGERPYKCDV 2006
+CK CG N+ H +HT E+P+ CDIC K+ + +L+ H E+P+KC
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 2007 CGSSFKDKKHFSVH 2020
CG F + +VH
Sbjct: 79 CGKGFCQSRTLAVH 92
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQ 1567
+++F C FC + F ++++L H THT +PY C IC+K+F RR + HL+ H+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF--RR--QDHLRDHRYIHSK 70
Query: 1568 LKPEDIHECKICHKIFLENSRLTRH 1592
KP +C+ C K F ++ L H
Sbjct: 71 EKP---FKCQECGKGFCQSRTLAVH 92
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 1322 SQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINKHTGN 1381
++K ++C CG+ FT + + IH+ H+ + C C K +RR+ L++H H+
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHER-THTDE-RPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 1382 KPYHCQICKESF 1393
KP+ CQ C + F
Sbjct: 72 KPFKCQECGKGF 83
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 572 CPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEED 631
C C + F + +H R H+ + Y CDIC K F +L HR H+ ++
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHS-------KE 71
Query: 632 KKYECDSCNKKFWSKRALSEHMIIH 656
K ++C C K F R L+ H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQKME 430
C C + FT + ++ +H R+ + ER + CDIC K F H H+ Y HS+++ +
Sbjct: 20 CKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDHR-YIHSKEK-PFK 75
Query: 431 CDYCKRKFTCKRYLAEHINAH 451
C C + F R LA H H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 396 ERKFICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNT 455
+++FIC CG+ FT + + H+ H+ D + CD C + F + +L +H H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THT-DERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 456 IYGCRICKKTFLYTNGLRRH 475
+ C+ C K F + L H
Sbjct: 73 PFKCQECGKGFCQSRTLAVH 92
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1973 EKPFCCDICGKSLKG--NLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
+K F C CG+ NL H ERPY CD+C +F+ + H H H ++K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKA 888
C +CHK + +R H R +HS +K + C CGK F + ++ HK
Sbjct: 48 CDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1784 LEQWRQLVAEKTKLCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCH 1843
L R E+ C +C+K + +R H R +H +K FKC C K F SR+L H
Sbjct: 34 LIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 1844 KQFVHLGVHKP 1854
K +H+ P
Sbjct: 93 KT-LHMQTSSP 102
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
S T +F C +C + + + ++L H HT +PY C IC ++F
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 1446 SGTKK---CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFG 1502
S TKK C C + ++ + IH R ++ Y CD+C K F + + H+
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR------ 65
Query: 1503 IIKTIQRKFECDFCKKKFYRNFDLQEHINTH 1533
I + ++ F+C C K F ++ L H H
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 572 CPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHNET 624
C IC K F +R H R++HS K + C CGK F L +H+ H +T
Sbjct: 48 CDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKA 1346
C +CHK + +R H R +H+ +K + C CGK F + + +HK
Sbjct: 48 CDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 423 SRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRH 475
S+ +++ C +C R FT L H HT Y C IC K F + LR H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
C C + ++ ++ H R H+ ++ Y CD+C K F + + H+ I + E+
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHR------YIHSKEK 72
Query: 901 KFECDYCKMKFKSKSFLSEHINTH 924
F+C C F L+ H H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 90
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 1477 YACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDF--CKKKFYRNFDLQEHINT 1532
+ CD CGK +T ++ + H T ++ + CD+ C KF R+ +L H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLR------THTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 1533 HTGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
HTG++P+QCQ C+++F + LH+KRH
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1024 CGKSL--KGNLKDHILKCHTGERPYKCDV--CGSSFKDKWYLGVHMRKHNGEKPYNCDYC 1079
CGK+ +LK H L+ HTGE+PY CD CG F L H RKH G +P+ C C
Sbjct: 14 CGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 1080 GQTFAARSTFTFHLKKH 1096
+ F+ H+K+H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 863 SSQKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDY--CKMKFKSKSFLS 918
S + CD CGK +T ++ + H T E+ + CD+ C KF L+
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLR------THTGEKPYHCDWDGCGWKFARSDELT 55
Query: 919 EHINTHTGNKPYQCQICKKSFANKRSYQRDLKRH 952
H HTG++P+QCQ C ++F+ +KRH
Sbjct: 56 RHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGKSLK----GNLKAHILRCQGERPYKCDVCGSSFKDKKHF 2017
++K H+ +HTGEKP+ CD G K L H + G RP++C C +F H
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 2018 SVHIRNH 2024
++H++ H
Sbjct: 83 ALHMKRH 89
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 1005 NLQKHMLSHTGEKPFCCHICGKSLKGNLKDHI---LKCHTGERPYKCDVCGSSFKDKWYL 1061
+L+ H+ +HTGEKP+ C G K D + + HTG RP++C C +F +L
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 1062 GVHMRKH 1068
+HM++H
Sbjct: 83 ALHMKRH 89
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 594 SSIKRYMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECD--SCNKKFWSKRAL 649
S + CD CGK +T S+L H ++H +K Y CD C KF L
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTG-------EKPYHCDWDGCGWKFARSDEL 54
Query: 650 SEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
+ H HTG + QC C+ AF L+ H+K H
Sbjct: 55 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 1326 YLCDI--CGKQFTSTNRVNIHKACVHSSTGNK-FECIY--CKKKYRRKFDLKEHINKHTG 1380
+ CD CGK +T ++ + H + + TG K + C + C K+ R +L H KHTG
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAH---LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 1381 NKPYHCQICKESF 1393
++P+ CQ C +F
Sbjct: 64 HRPFQCQKCDRAF 76
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 374 CTKIFTTAKHMRVHLRSVHNGKERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMEC 431
C K +T + H++ HLR+ H G E+ + CD CG +F + +RH Y + +C
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRH--YRKHTGHRPFQC 69
Query: 432 DYCKRKFTCKRYLAEHINAH 451
C R F+ +LA H+ H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 1801 CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNME 1860
C K Y ++ HLR H +K + CD +K +RS + + + H+P +
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP----FQ 68
Query: 1861 CDYCSRKFPSKNEVTNHIKSHM 1882
C C R F + + H+K H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRHF 90
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1827 CDL--CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGV 1884
CD C K + S L+ H + H G KP + + D C KF +E+T H + H G
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLR-THTGE-KP--YHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 1885 RDILCPICKKGF 1896
R C C + F
Sbjct: 65 RPFQCQKCDRAF 76
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 400 ICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIY 457
CD CGK +T + H H + D C KF L H HTG+ +
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 458 GCRICKKTFLYTNGLRRHI 476
C+ C + F ++ L H+
Sbjct: 68 QCQKCDRAFSRSDHLALHM 86
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 89
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 1477 YACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDF--CKKKFYRNFDLQEHINT 1532
+ CD CGK +T ++ + H T ++ + CD+ C KF R+ +L H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR------THTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 1533 HTGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
HTG++P+QCQ C+++F + LH+KRH
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1024 CGKSL--KGNLKDHILKCHTGERPYKCDV--CGSSFKDKWYLGVHMRKHNGEKPYNCDYC 1079
CGK+ +LK H L+ HTGE+PY CD CG F L H RKH G +P+ C C
Sbjct: 13 CGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 1080 GQTFAARSTFTFHLKKH 1096
+ F+ H+K+H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 868 YVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDY--CKMKFKSKSFLSEHINT 923
+ CD CGK +T ++ + H T E+ + CD+ C KF L+ H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR------THTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 924 HTGNKPYQCQICKKSFANKRSYQRDLKRH 952
HTG++P+QCQ C ++F+ +KRH
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGKSLK----GNLKAHILRCQGERPYKCDVCGSSFKDKKHF 2017
++K H+ +HTGEKP+ CD G K L H + G RP++C C +F H
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 2018 SVHIRNH 2024
++H++ H
Sbjct: 82 ALHMKRH 88
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 1005 NLQKHMLSHTGEKPFCCHICGKSLKGNLKDHI---LKCHTGERPYKCDVCGSSFKDKWYL 1061
+L+ H+ +HTGEKP+ C G K D + + HTG RP++C C +F +L
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 1062 GVHMRKH 1068
+HM++H
Sbjct: 82 ALHMKRH 88
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECD--SCNKKFWSKRALSEHMI 654
+ CD CGK +T S+L H ++H +K Y CD C KF L+ H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTG-------EKPYHCDWDGCGWKFARSDELTRHYR 58
Query: 655 IHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
HTG + QC C+ AF L+ H+K H
Sbjct: 59 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 1290 KIVASGSKDCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVH 1349
K A+ + D C KTY+ ++ HLR HT +K Y CD G
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDG----------------- 42
Query: 1350 SSTGNKFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
C K+ R +L H KHTG++P+ CQ C +F
Sbjct: 43 -----------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF 75
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 374 CTKIFTTAKHMRVHLRSVHNGKERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMEC 431
C K +T + H++ HLR+ H G E+ + CD CG +F + +RH Y + +C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRH--YRKHTGHRPFQC 68
Query: 432 DYCKRKFTCKRYLAEHINAH 451
C R F+ +LA H+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 1801 CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNME 1860
C K Y ++ HLR H +K + CD +K +RS + + + H+P +
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP----FQ 67
Query: 1861 CDYCSRKFPSKNEVTNHIKSHM 1882
C C R F + + H+K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1827 CDL--CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGV 1884
CD C K + S L+ H + H G KP + + D C KF +E+T H + H G
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLR-THTGE-KP--YHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 1885 RDILCPICKKGF 1896
R C C + F
Sbjct: 64 RPFQCQKCDRAF 75
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 400 ICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIY 457
CD CGK +T + H H + D C KF L H HTG+ +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 458 GCRICKKTFLYTNGLRRHI 476
C+ C + F ++ L H+
Sbjct: 67 QCQKCDRAFSRSDHLALHM 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1016 EKPFCCHICGKSL--KGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+KP+ C C S KGNL H HTGE+PY+C++CG+ F L H R H+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
++PYKCD C +SF+ K L H H GEKPY C+ CG F + H + H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
DK Y+CD C F K L+ H +HTG K ++C++C F +L H +IH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1973 EKPFCCDICGKSL--KGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
+KP+ CD C S KGNL +H GE+PY+C++CG+ F + H R H +K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 990 DKCHICKVCGA--KIKGNLQKHMLSHTGEKPFCCHICGKSLK--GNLKDHILKCHTGERP 1045
DK + C C A + KGNL H HTGEKP+ C+ICG NLK H + H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSGEKP 73
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQ 958
++ ++CD C+ F+ K L+ H HTG KPY+C IC F + +LK H ++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF----NRPANLKTHTRIHSG 70
Query: 959 LKP 961
KP
Sbjct: 71 EKP 73
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1947 DKCHVCKVCGA--KIKGNMKRHMLSHTGEKPFCCDICGKSLK--GNLKAHILRCQGERP 2001
DK + C C A + KGN+ H HTGEKP+ C+ICG NLK H GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 1509 RKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
+ ++CD C+ F +L H HTG KPY+C IC F N + H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 965 HECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGAKIK--GNLQKHMLSHTGEKP 1018
++C C +F KG+LA H G+K + C +CGA+ NL+ H H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1919 EDTYLCDLCSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEKP 1975
+ Y CD C F ++ H+ G+K + C +CGA+ N+K H H+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1475 KKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHT 1534
K Y CD C F ++ HK + T ++ + C+ C +F R +L+ H H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK------TVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 1535 GNKP 1538
G KP
Sbjct: 70 GEKP 73
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
++C C+ +R K +L H HTG KPY C IC F
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 866 KKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHT 925
K Y CD C F ++ HK + T E+ + C+ C +F + L H H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK------TVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 926 GNKP 929
G KP
Sbjct: 70 GEKP 73
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 430 ECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRH 475
+CD C+ F K LA H HTG Y C IC F L+ H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 1324 KRYLCDICGKQFTSTNRVNIHKACVHSSTGNK-FECIYCKKKYRRKFDLKEHINKHTGNK 1382
K Y CD C F + HK VH TG K + C C ++ R +LK H H+G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VH--TGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 1383 P 1383
P
Sbjct: 73 P 73
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 568 KSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSHN 622
K +C C+ F + H + VH+ K Y C+ICG QF + L H + H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIH 1344
C C ++ + H + VHT +K Y C+ICG QF + H
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
K Y CD C F L H+ H +K Y C+ C +F L H IH
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTG-------EKPYRCNICGAQFNRPANLKTHTRIH 68
Query: 657 TGIK 660
+G K
Sbjct: 69 SGEK 72
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 752 FHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIH 805
+ CD C FR + H K VH K ++C++C +F+ A LK H +IH
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTG-EKPYRCNICGAQFNRPANLKTHT-RIH 68
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 1013 HTGEKPFCCHICGKSLKGNLKDHILKCHTGERPYKC--DVCGSSFKDKWYLGVHMRKHNG 1070
H + P C + KS +LK H L+ HTGE+PYKC + C F L H RKH G
Sbjct: 16 HYCDYPGCTKVYTKS--SHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKHE 1097
KP+ C C ++F+ H+K+H+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 32/111 (28%)
Query: 1452 PVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKF 1511
P C K Y+ ++ HLR +K Y C G
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG---------------------------- 52
Query: 1512 ECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHK 1562
CD+ +F R+ +L H HTG KP+QC +CN+SF + LH+KRH+
Sbjct: 53 -CDW---RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGKSLK----GNLKAHILRCQGERPYKCDVCGSSFKDKKHF 2017
++K H+ +HTGEKP+ C G + L H + G +P++C VC SF H
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 2018 SVHIRNH 2024
++H++ H
Sbjct: 92 ALHMKRH 98
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 33/114 (28%)
Query: 840 DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIE 899
D P C K Y+ ++ HLR H+ +K Y C G
Sbjct: 19 DYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEG------------------------- 52
Query: 900 RKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHK 953
C +F L+ H HTG KP+QC +C +SF+ +KRH+
Sbjct: 53 -------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 599 YMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYEC--DSCNKKFWSKRALSEHMI 654
+ CD C K +T S+L H ++H +K Y+C + C+ +F L+ H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTG-------EKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 655 IHTGIKEHQCHVCNTAFYHIRSLSRHLKIHE 685
HTG K QC VCN +F L+ H+K H+
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 904 CDY--CKMKFKSKSFLSEHINTHTGNKPYQC--QICKKSFANKRSYQRDLKRHKQLAGQL 959
CDY C + S L H+ THTG KPY+C + C FA +L RH +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR----SDELTRHYRKHTGA 73
Query: 960 KPEDIHECKICHKTFLEKGSLAKHM 984
KP +C +C+++F LA HM
Sbjct: 74 KP---FQCGVCNRSFSRSDHLALHM 95
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 1298 DCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFE 1357
D P C K Y+ ++ HLR HT +K Y C G
Sbjct: 19 DYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEG------------------------- 52
Query: 1358 CIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHE 1407
C ++ R +L H KHTG KP+ C +C SF +KRH+
Sbjct: 53 ---CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 372 PLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQKMEC 431
P CTK++T + H++ HLR+ K K + C +F + +RH Y + +C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH--YRKHTGAKPFQC 78
Query: 432 DYCKRKFTCKRYLAEHINAH 451
C R F+ +LA H+ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRH 98
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRL--CDMSFSNKYQKKKHYSAFHKGMPFIPSFT 165
CT+V+ + L+ H+R H GE+ C CD F+ + +HY PF
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF----Q 77
Query: 166 CPICQKIFKNKEWYLDHLSLH 186
C +C + F DHL+LH
Sbjct: 78 CGVCNRSFSRS----DHLALH 94
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 1799 PVCNKEYATPVTMRKHLREVHVSKKKFKC--DLCQKQFKASRSLQCHKQFVHLGVHKPKF 1856
P C K Y ++ HLR H +K +KC + C +F S L H + H G KP
Sbjct: 21 PGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGA-KP-- 75
Query: 1857 LNMECDYCSRKFPSKNEVTNHIKSH 1881
+C C+R F + + H+K H
Sbjct: 76 --FQCGVCNRSFSRSDHLALHMKRH 98
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 1827 CDL--CQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGV 1884
CD C K + S L+ H + H G K CD+ +F +E+T H + H G
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDW---RFARSDELTRHYRKHTGA 73
Query: 1885 RDILCPICKKGF 1896
+ C +C + F
Sbjct: 74 KPFQCGVCNRSF 85
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 575 CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
C+ FA ++ H R H+ K + C +C + F+ +L LH K H
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFA 1084
+P++C +C +F +L H+R H GEKP+ CD CG+ FA
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 902 FECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHKQL 955
F+C C F L+ HI THTG KP+ C IC + FA RS +R KRH+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA--RSDER--KRHRDI 53
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 1511 FECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFG 1549
F+C C + F R+ L HI THTG KP+ C IC + F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 370 QCPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAH 422
QC +C + F+ + H+ H+R+ H G E+ F CDICG++F + RH++ H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQH 55
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 1017 KPFCCHICGKSLKGNLKDHI---LKCHTGERPYKCDVCGSSF 1055
KPF C IC ++ + DH+ ++ HTGE+P+ CD+CG F
Sbjct: 2 KPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICGRKF 41
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
C +C + +S + H+R H+ +K + CD+CG++F ++ +H+ H I+ +E
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILED 62
Query: 901 KFE 903
K E
Sbjct: 63 KVE 65
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1450 KCPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQR 1509
+C +C + +S + H+R +K +ACD+CG++F ++ +H+ H I+ ++
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILED 62
Query: 1510 KFE 1512
K E
Sbjct: 63 KVE 65
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1974 KPFCCDICGK--SLKGNLKAHILRCQGERPYKCDVCGSSF 2011
KPF C IC + S +L HI GE+P+ CD+CG F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
F+C C + + R L HI HTG KP+ C IC F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 429 MECDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRH 475
+C C R F+ +L HI HTG + C IC + F ++ +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1952 CKVCGAKIK--GNMKRHMLSHTGEKPFCCDICGKSL 1985
C++C ++ H+ +HTGEKPF CDICG+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVH 1349
C +C + +S + H+R HT +K + CDICG++F ++ H+ H
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 752 FHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIHFTPEFQ 811
F C C + F HI R H K F CD+C +F+ S + K+H D H P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTG-EKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 812 EPSKKNEPLDTGDYTLE 828
+ K E L + +Y LE
Sbjct: 62 D---KVEELLSKNYHLE 75
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 995 CKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSL 1028
C++C +L H+ +HTGEKPF C ICG+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 659 IKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKH 715
+K QC +C F L+ H++ H K + C +C + F E KRHRD +H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 568 KSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFT 609
K QC IC + F+ + H+R H+ K + CDICG++F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFA 42
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1859 MECDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGF 1896
+C C R F + +T HI++H G + C IC + F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 1798 CPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFL 1857
C +C + ++ + H+R H +K F CD+C ++F S + H+ H+ P
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHI---LPILE 61
Query: 1858 NMECDYCSRKFPSKNEVTNHIKSHMGVR 1885
+ + S+ + +NEV +K +G R
Sbjct: 62 DKVEELLSKNYHLENEVAR-LKKLVGER 88
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFH 155
CRIC F L H+R H GE+ C +C F+ ++K+H H
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 1475 KKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEH 1529
K + C +C + F+ ++ ++ H +H G ++ F CD C +KF R+ + + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTHTG-----EKPFACDICGRKFARSDERKRH 50
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 1537 KPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTRHMNFT 1596
KP+QC+IC ++F +R + HL H R+ KP C IC + F + RH +
Sbjct: 2 KPFQCRICMRNF-SRSD---HLTTHIRTHTGEKP---FACDICGRKFARSDERKRHRDIQ 54
Query: 1597 H 1597
H
Sbjct: 55 H 55
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEENGS 1101
E+PY C CG +F L H R H GEKPY C CG+ F+ S H + H S
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNES 689
+K Y C C K F L +H +HTG K ++C C AF L H +IH S
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 1016 EKPFCCHICGKSLKGNLKDHIL----KCHTGERPYKCDVCGSSFKDKWYLGVHMRKH 1068
EKP+ C CGK+ + IL + HTGE+PYKC CG +F L H R H
Sbjct: 12 EKPYGCVECGKAFS---RSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFA 940
E+ + C C F S L +H HTG KPY+C C K+F+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
++ + C C K F R+ L +H HTG KPY+C C K+F H + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIH 656
K Y C CGK F+ S L H++ H +K Y+C C K F L H IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHT-------GEKPYKCLECGKAFSQNSGLINHQRIH 65
Query: 657 T 657
T
Sbjct: 66 T 66
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
+ C+ C K + R L +H HTG KPY C C ++F
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 1474 QKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTH 1533
+K Y C CGK F+ ++ + QH+ + T ++ ++C C K F +N L H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR------VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Query: 1534 T 1534
T
Sbjct: 66 T 66
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1973 EKPFCCDICGKSLKGN--LKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
EKP+ C CGK+ + L H GE+PYKC CG +F H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 840 DCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHK 887
C C K +S + +H R VH+ +K Y C CGK F+ N+ + H+
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 865 QKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTH 924
+K Y C CGK F+ ++ + QH+ + T E+ ++C C F S L H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR------VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Query: 925 T 925
T
Sbjct: 66 T 66
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 431 CDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRH 475
C C + F+ L +H HTG Y C C K F +GL H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1298 DCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSS 1351
C C K +S + +H R VHT +K Y C CGK F+ + + H+ +H+S
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQR-IHTS 67
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHE 1097
ERP+ C+ CG +++D L H R H G +P +C CG+ F +S HLK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLKRHK 953
ER F C++C ++ S LS H H G +P C C K F ++ R LK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 1016 EKPFCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKH 1068
E+PF C+ CGK+ + L H + H G RP C CG F+D+ + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1973 EKPFCCDICGKSLK--GNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
E+PF C+ CGK+ + L H G RP C CG F+D+ + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHE 685
++ + C+ C K + LS H H G + C C F ++RHLK+H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLKRHK 1562
+R F C+FC K + L H H G +P C C K F + HLK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 1821 SKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKS 1880
S++ F C+ C K ++ + L H++ HLG ++P+ C C + F ++EV H+K
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRR-AHLG-YRPR----SCPECGKCFRDQSEVNRHLKV 54
Query: 1881 HM 1882
H
Sbjct: 55 HQ 56
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 595 SIKRYMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMI 654
S + + C+ CGK + S L HR++H R C C K F + ++ H+
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR-------SCPECGKCFRDQSEVNRHLK 53
Query: 655 IH 656
+H
Sbjct: 54 VH 55
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 864 SQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINT 923
S++ + C+ CGK + + +S+H+ +H G R C C F+ +S ++ H+
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRR-AHLGY-----RPRSCPECGKCFRDQSEVNRHLKV 54
Query: 924 HTGNKP 929
H NKP
Sbjct: 55 HQ-NKP 59
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 1861 CDYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGF 1896
C++C + + + ++ H ++H+G R CP C K F
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 1025 GKSLKGNLK--DHILKCHTGERPYKCDV--CGSSFKDKWYLGVHMRKHNGEKPYNCDY-- 1078
GKS K K +HI + HTGE+P+ C CG F L +H R H GEKP+ C++
Sbjct: 69 GKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 1079 CGQTFAARSTFTFHLKKHEENGS 1101
C + FA S H+ H + S
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKS 150
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 1434 DLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLREAH----SQKKYAC--DVC---GK 1484
+LS + +E LS KK C +T+ST ++ H+ H Q + C + C GK
Sbjct: 13 ELSCKWIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK 70
Query: 1485 QFTSTNRVSQHKAHSHFGIIKTIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQCQ 1542
F + ++ H + T ++ F C F C K F R+ +L+ H THTG KP++C+
Sbjct: 71 SFKAKYKLVNHIR------VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 1543 I--CNKSFGTRRNYRLHLKRH 1561
C++ F + + H+ H
Sbjct: 125 FEGCDRRFANSSDRKKHMHVH 145
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1047 KCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKH 1096
+C G SFK K+ L H+R H GEKP+ C + CG+ FA H + H
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 37/156 (23%)
Query: 507 RYCARTFSTQNDLKEHVSSVHMFMTESFENPNEPRVLNSNRYPLAIDGGLSLEEYQQIVA 566
+ C RTFST ++L HV+ H+ E Q
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPE-----------------------------QNNHV 59
Query: 567 TKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDI--CGKQFTTLSYLDLHRKSHNET 624
++CP K F A ++ H+R VH+ K + C CGK F L +H+++H
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT-- 116
Query: 625 VKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
E+ K E + C+++F + +HM +HT K
Sbjct: 117 ---GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1958 KIKGNMKRHMLSHTGEKPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCG----- 2008
K K + H+ HTGEKPF C CGK + NLK H GE+P+KC+ G
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 2009 -SSFKDKKHFSVHIRN 2023
+S KKH VH +
Sbjct: 133 ANSSDRKKHMHVHTSD 148
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 1297 KDCPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDI--CGKQFTSTNRVNIHKACVHSSTGN 1354
++CP K++ + H+R VHT +K + C CGK F + + IHK + TG
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHK---RTHTGE 118
Query: 1355 K-FECIY--CKKKYRRKFDLKEHINKHTGNK 1382
K F+C + C +++ D K+H++ HT +K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 856 KHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKT---IERKFECDYCKMKFK 912
K + E S+ K CD + F++ + + H H G + + EC FK
Sbjct: 17 KWIDEAQLSRPKKSCD---RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 913 SKSFLSEHINTHTGNKPYQCQI--CKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKIC 970
+K L HI HTG KP+ C C K FA +LK HK+ KP E + C
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR----SENLKIHKRTHTGEKPFKC-EFEGC 128
Query: 971 HKTFLEKGSLAKHMNWVHGDK 991
+ F KHM+ DK
Sbjct: 129 DRRFANSSDRKKHMHVHTSDK 149
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 1302 CHKTYSTPKTMRRHLRQVHTSQKRYLCDIC--------GKQFTSTNRVNIHKACVHSSTG 1353
C +T+ST + H+ H +C GK F + ++ H + TG
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH---IRVHTG 87
Query: 1354 NK-FECIY--CKKKYRRKFDLKEHINKHTGNKPYHCQI 1388
K F C + C K + R +LK H HTG KP+ C+
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 1813 KHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLN-----MECDYCSRK 1867
K + E +S+ K CD + F L H H+G P+ N EC +
Sbjct: 17 KWIDEAQLSRPKKSCD---RTFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKS 71
Query: 1868 FPSKNEVTNHIKSHMGVRDILCPI 1891
F +K ++ NHI+ H G + CP
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPF 95
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 324 CEDKFSTPFELNKHNESKHEKGRKLNPXXXXXXXXXXXXXXXXXXXQCPLCTKIFTTAKH 383
C+ FST EL H +H G + N +CP K F
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQN-------------NHVCYWEECPREGKSFKAKYK 77
Query: 384 MRVHLRSVHNGKERKFICDI--CGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCK 441
+ H+R VH G E+ F C CGK F + + HK K E + C R+F
Sbjct: 78 LVNHIR-VHTG-EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135
Query: 442 RYLAEHINAHTGN 454
+H++ HT +
Sbjct: 136 SDRKKHMHVHTSD 148
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 638 SCNKKFWSKRALSEHMII-HTGIKEHQCHVC--------NTAFYHIRSLSRHLKIHEYNE 688
SC++ F + L H+ + H G E HVC +F L H+++H
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH--TG 87
Query: 689 SKMYKCPV--CSKMFTELYEMKRHRDHKHGGKCHVCKICG 726
K + CP C K+F +K H+ G K C+ G
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 970 CHKTFLEKGSLAKHMN--WVHGD-KCHICKVCGA-------KIKGNLQKHMLSHTGEKPF 1019
C + F + L H+N +HG+ K +C G K + L HM HTGEKP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 1020 CCHI--CGKSLK--GNLKDHILKCHTGERPYKCD--VCGSSFKDKWYLGVHM-RKHNGEK 1072
C C KS NLK H L+ HTGE+PY C+ C +F + H R H+ EK
Sbjct: 69 KCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 1073 PYNCDYCGQTFAARSTFTFHLKKH 1096
PY C G T R T L+KH
Sbjct: 128 PYVCKLPGCT--KRYTDPSSLRKH 149
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 1013 HTGEKPFCCHI--CGKSLKGNLKDHIL----KCHTGERPYKC--DVCGSSFKDKWYLGVH 1064
H K F CH C + L+ ++L + HTGE+P+KC + C S+ L H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 1065 MRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKHEEN 1099
+R H GEKPY C++ C + F+ S H + N
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 861 VHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDY--CKMKFKSKSFLS 918
+H +K++VC G +Q+ H T E+ +C + C+ + L
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 919 EHINTHTGNKPYQC--QICKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLE 976
H+ +HTG KPY C + C K+F+N D +H+ + + + C K + +
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 977 KGSLAKHMNWVHG 989
SL KH+ VHG
Sbjct: 143 PSSLRKHVKTVHG 155
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 1506 TIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQC--QICNKSFGTRRNYRLHLKRH 1561
T ++ +C F C+K + R +L+ H+ +HTG KPY C + C+K+F N K
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS---NASDRAKHQ 119
Query: 1562 KRSAGQLKPEDIHECKI--CHKIFLENSRLTRHMNFTHG 1598
R+ KP + CK+ C K + + S L +H+ HG
Sbjct: 120 NRTHSNEKP---YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 602 DICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYE-CDSCNKKFWSKRALSEHMIIHTGIK 660
D C ++F + L H S + +RKE + C + F ++ L HM HTG K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 661 EHQCHV--CNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGG- 717
H+C C ++ + +L HL+ H + M + CSK F+ + +H++ H
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 718 KCHVCKICGAT 728
K +VCK+ G T
Sbjct: 127 KPYVCKLPGCT 137
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 947 RDLKRHKQLAGQLKPEDIHECK---ICH--------KTFLEKGSLAKHMNWVHGDKCHIC 995
++ +QL + E IH + +CH + F + L HM G+K H C
Sbjct: 11 QEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKC 70
Query: 996 KVCGAKIK----GNLQKHMLSHTGEKPFCC--HICGKSLKGNLKD---HILKCHTGERPY 1046
G + NL+ H+ SHTGEKP+ C C K+ N D H + H+ E+PY
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF-SNASDRAKHQNRTHSNEKPY 129
Query: 1047 KCDV--CGSSFKDKWYLGVHMRKHNG 1070
C + C + D L H++ +G
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 575 CEKIFAAPKQMRMHL--RHVHSSIKRYMCDICG-----KQFTTLSYLDLHRKSHNETVKR 627
C + F + +Q+ H+ H+H K ++C G + F L +H + H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT----- 63
Query: 628 KEEDKKYECDSCNKKFWSKRALSEHMIIHTGIKEHQCH--VCNTAFYHIRSLSRHLKIHE 685
E+ K + C K + L H+ HTG K + C C+ AF + ++H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 686 YNESKMYKC--PVCSKMFTELYEMKRHRDHKHG 716
NE K Y C P C+K +T+ +++H HG
Sbjct: 124 SNE-KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 51/185 (27%)
Query: 1302 CHKTYSTPKTMRRHL--RQVHTSQKRYLCDICG-----KQFTSTNRVNIHKACVHSSTGN 1354
C + + + + + H+ +H +K ++C G + F + + +H + TG
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH---MRRHTGE 65
Query: 1355 K-FECIY--CKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQLAE 1411
K +C + C+K Y R +LK H+ HTG KPY C+ HE ++
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE------------------HEGCSK 107
Query: 1412 QSDEMHSTSKFQNKI---KKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHL 1468
+K QN+ +KP K P C K Y+ P +R H+
Sbjct: 108 AFSNASDRAKHQNRTHSNEKPY-----------------VCKLPGCTKRYTDPSSLRKHV 150
Query: 1469 REAHS 1473
+ H
Sbjct: 151 KTVHG 155
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 785 DLCSDRFSTSAKLKKHVDKIHFTPEFQEP-------SKKNEPLDTGDYTLEQWNELVTAQ 837
D CS F + +L H++ H E +E S++ P + +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 838 SKDCPV--CHKTYSTPKSMRKHLREVHSSQKKYVC--DMCGKQFTSNNRVSQHKAYSHFG 893
C C K+YS ++++ HLR H+ +K Y+C + C K F++ + ++H+ +H
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH-- 123
Query: 894 IIKTIERKFECDY--CKMKFKSKSFLSEHINTHTG 926
+ E+ + C C ++ S L +H+ T G
Sbjct: 124 ---SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 32/166 (19%)
Query: 374 CTKIFTTAKHMRVHLRSVH-NGKERKFICDICG---------KQFTSNIHASRHKNYAHS 423
C++ F + + + H+ S H +G+ ++F+C G Q+ +H RH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG---- 64
Query: 424 RDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYGC--RICKKTFLYTNGLRRHILSRHK 481
K + C++ ++ L H+ +HTG Y C C K F + +H H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH- 123
Query: 482 DTDVVILNEVKDIFPSHLQSYQIKCRYCARTFSTQNDLKEHVSSVH 527
S+ + Y K C + ++ + L++HV +VH
Sbjct: 124 ---------------SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 1946 GDKCHVCKVCGAKIK----GNMKRHMLSHTGEKPFCC--DICGKSLK--GNLKAHILRCQ 1997
G+K H C G + N+K H+ SHTGEKP+ C + C K+ + H R
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 1998 G-ERPYKCDV--CGSSFKDKKHFSVHIRN-HG 2025
E+PY C + C + D H++ HG
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIER 900
C VC ++Y S+R+H +HS +KKY C C K F ++H+ I T ER
Sbjct: 25 CIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHE------IHHTGER 77
Query: 901 KFECDYCKMKFKSKSFLSEHINTHTGNKP 929
+++C C F + F+S HI + P
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 599 YMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMIIHTG 658
Y+C +C + + L+ L H H+ +KKY C C K F ++H I HTG
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSW-------EKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 659 IKEHQCHVCNTAFYHIRSLSRHLK-IHEYN---ESKMYKCPVCSKMFTELY 705
+ +QC C +F + + +S H+K +H + +SK+Y+ C + Y
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY 126
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 868 YVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGN 927
Y+C +C + + + +H F I + E+K+ C YC+ F + ++H HTG
Sbjct: 23 YICIVCKRSYVCLTSLRRH-----FNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 928 KPYQCQICKKSFANKRSYQRDLKR-HKQ-LAGQLKPEDIHECK 968
+ YQC C KSF N + +K H Q +G K +H C+
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCR 119
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 399 FICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHINAHTGNTIYG 458
+IC +C + + RH N HS ++ K C YC++ F Y +H HTG Y
Sbjct: 23 YICIVCKRSYVCLTSLRRHFN-IHSWEK-KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 459 CRICKKTFLYTNGLRRHILSRH 480
C C K+F+ + HI S H
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 1944 VHGDKCHVCKVCGAKIK--GNMKRHMLSHTGEKPFCCDICGK--SLKGNLKAHILRCQGE 1999
V G ++C VC +++RH H+ EK + C C K L H + GE
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 2000 RPYKCDVCGSSFKDKKHFSVHIRN-HGED 2027
R Y+C CG SF + + S HI++ H +D
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 1015 GEKPFCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
G + C +C +S +L+ H H+ E+ Y C C F Y H H GE+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRH-FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 1073 PYNCDYCGQTFAARSTFTFHLKK-HEENGSVD 1103
Y C CG++F + H+K H ++ S D
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSGD 109
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 1442 ELVLSGTKK--CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHS 1499
EL++ G C VC ++Y +R H +KKY C C K F ++H+ H
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH- 72
Query: 1500 HFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLH 1557
T +R+++C C K F + HI + P G + YRLH
Sbjct: 73 -----HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP---------SGDSKLYRLH 116
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 541 RVLNSNRYPLAIDGGLSLEEYQQIVATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYM 600
+V + + Y L +DG + C +C++ + +R H ++HS K+Y
Sbjct: 6 KVKHDDHYELIVDGRVYY------------ICIVCKRSYVCLTSLRRHF-NIHSWEKKYP 52
Query: 601 CDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHM 653
C C K F Y H H +++Y+C +C K F + + +S H+
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHT-------GERRYQCLACGKSFINYQFMSSHI 98
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFEC 1358
C VC ++Y ++RRH +H+ +K+Y C C K F H+ +H + +++C
Sbjct: 25 CIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHE--IHHTGERRYQC 81
Query: 1359 IYCKKKYRRKFDLKEHINKHTGNKP 1383
+ C K + + HI P
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDP 106
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 1797 LCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLGVHKPKF 1856
+C VC + Y ++R+H +H +KK+ C C+K F + H+ +H
Sbjct: 24 ICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHE------IHHTGE 76
Query: 1857 LNMECDYCSRKFPSKNEVTNHIKS 1880
+C C + F + +++HIKS
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKS 100
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 104 TCRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKGMPFIPS 163
C +C + LT LRRH + H E+ PCR C+ F + KH H G
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGE---RR 78
Query: 164 FTCPICQKIFKNKEWYLDHL-SLHEE 188
+ C C K F N ++ H+ S+H +
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 654 IIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDH 713
+I G + C VC ++ + SL RH IH + K Y C C K+F +H H
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE--KKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 714 KHGGKCHVCKICGATIKLFTELEEKEDSSFERKKSKDS 751
G + + C CG + + + S + S DS
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDS 110
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 967 CKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGA--KIKGNLQKHMLSHTGEKPFCCHIC 1024
C +C ++++ SL +H N +K + C+ C + KH + HTGE+ + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 1025 GKSLKGN--LKDHILKCHTGE 1043
GKS + HI H+ +
Sbjct: 85 GKSFINYQFMSSHIKSVHSQD 105
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRD 425
C C K+F A++ H +H+ ER++ C CGK F + S H HS+D
Sbjct: 53 CRYCEKVFPLAEYRTKH--EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 891 HFGIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLK 950
H+ +I + C CK + + L H N H+ K Y C+ C+K F
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP---------- 61
Query: 951 RHKQLAGQLKPEDIH-------ECKICHKTFLEKGSLAKHMNWVHG 989
LA +IH +C C K+F+ ++ H+ VH
Sbjct: 62 ----LAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 1500 HFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLK 1559
H+ +I + + C CK+ + L+ H N H+ K Y C+ C K F YR +
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPL-AEYRTKHE 70
Query: 1560 RHKRSAGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDKCHG 1603
H E ++C C K F+ ++ H+ H G
Sbjct: 71 IHHTG------ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSG 108
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 568 KSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKS 620
K C CEK+F + H H H+ +RY C CGK F ++ H KS
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 1326 YLCDICGKQF---TSTNR-VNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINKHTGN 1381
Y+C +C + + TS R NIH S K+ C YC+K + +H HTG
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIH------SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 1382 KPYHCQICKESF 1393
+ Y C C +SF
Sbjct: 77 RRYQCLACGKSF 88
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYR 1400
+ CI CK+ Y L+ H N H+ K Y C+ C++ F L YR
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF-PLAEYR 66
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 1825 FKCDLCQKQFKASRSLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHMGV 1884
+ C +C++ + SL+ H +H + C YC + FP T H H G
Sbjct: 23 YICIVCKRSYVCLTSLR-----RHFNIHSWE-KKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 1885 RDILCPICKKGFI 1897
R C C K FI
Sbjct: 77 RRYQCLACGKSFI 89
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 1492 VSQHKAHSHFGIIKTIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFG 1549
+ H ++ + R + C C ++F R+ +L HI HTG KP+QC+IC ++F
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 1550 TRRNYRLHLKRH 1561
+ H++ H
Sbjct: 61 RSDHLTTHIRTH 72
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1044 RPYKCDV--CGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
RPY C V C F L H+R H G+KP+ C C + F+ T H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 900 RKFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFA 940
R + C + C +F L+ HI HTG KP+QC+IC ++F+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 632 KKYEC--DSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIH 684
+ Y C +SC+++F L+ H+ IHTG K QC +C F L+ H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 1475 KKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINT 1532
+ YAC V C ++F+ ++ +++H I T Q+ F+C C + F R+ L HI T
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 1533 HT 1534
HT
Sbjct: 72 HT 73
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1361 CKKKYRRKFDLKEHINKHTGNKPYHCQICKESF 1393
C +++ R +L HI HTG KP+ C+IC +F
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 434 CKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHI 476
C R+F+ L HI HTG + CRIC + F ++ L HI
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1974 KPFCCDI--CGK--SLKGNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
+P+ C + C + S L HI G++P++C +C +F H + HIR H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 1017 KPFCCHI--CGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRKH 1068
+P+ C + C + S L HI + HTG++P++C +C +F +L H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 851 PKSMRKHLREVHSSQKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCK 908
P M L V + Y C + C ++F+ ++ +++H I T ++ F+C C
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR------IHTGQKPFQCRICM 56
Query: 909 MKFKSKSFLSEHINTHT 925
F L+ HI THT
Sbjct: 57 RNFSRSDHLTTHIRTHT 73
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 1299 CPV--CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIH 1344
CPV C + +S + RH+R +HT QK + C IC + F+ ++ + H
Sbjct: 22 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1854 PKFLNMEC--DYCSRKFPSKNEVTNHIKSHMGVRDILCPICKKGF 1896
PK C + C R+F +E+T HI+ H G + C IC + F
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1798 CPV--CNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCH 1843
CPV C++ ++ + +H+R +H +K F+C +C + F S L H
Sbjct: 22 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 564 IVATKSKQCPI--CEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLHRKSH 621
+ + CP+ C++ F+ ++ H+R +H+ K + C IC + F+ +L H ++H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 259 DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVASFLTPHKLKTHIKT 307
++CD+ F ++ RH IR+H K F+C IC+ +F L THI+T
Sbjct: 25 ESCDRRFSRSDELTRH-IRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693-
723) Of Human Zinc Finger Protein 268
Length = 44
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+G +PY C CG +F+ K YL +HMR H GEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 900 RKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
+ + C C F+SKS+L H+ THTG KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1997 QGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
G +PY C CG +F+ K + +H+R H +K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 594 SSIKRYMCDICGKQFTTLSYLDLHRKSHN 622
S +K Y C CGK F + SYL +H ++H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHT 34
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+G KPY C CG+ F ++S H++ H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775-
807) Of Human Zinc Finger Protein 268
Length = 46
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C CG +F K YL +HMR H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY C CG +F K + +H+R H +K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ + C C F SKS+L H+ TH+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C CG+ F+++S H++ H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHN 622
K Y C CGK F++ SYL +H ++H+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHS 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr,
25 Structures
Length = 60
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1511 FECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRN 1553
F C+ C + F R L+ H +HT KPY C +CN++F TRR+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF-TRRD 44
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKK 1095
+ C+VC +F + +L H R H EKPY C C + F R H +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 902 FECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLK-RHKQ 954
F C+ C F + L H +HT KPY C +C ++F +RDL RH Q
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT-----RRDLLIRHAQ 51
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQ 1408
F C C + + R+ LK H HT KPY C +C +F T R L RH Q
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF----TRRDLLIRHAQ 51
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 104 TCRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFHKG 157
C +CT F L+RH R H E+ PC LC+ +F+ + +H H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSS 1351
C VC + ++ + ++RH R HT++K Y C +C + FT + + H +HS
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFG 893
C VC + ++ + +++H R H+++K Y C +C + FT + + +H H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1797 LCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVHLG 1850
+C VC + +A +++H R H ++K + C LC + F L H Q +H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHS 423
C +CT+ F +H++ H RS N E+ + C +C + FT RH HS
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 599 YMCDICGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECDSCNKKFWSKRALSEHMI-IHT 657
++C++C + F +L H +SH +K Y C CN+ F + L H IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHT-------NEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Query: 658 G 658
G
Sbjct: 56 G 56
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 1951 VCKVCGAKI--KGNMKRHMLSHTGEKPFCCDICGKSL 1985
VC+VC + ++KRH SHT EKP+ C +C ++
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 1539 YQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTRHMNFTH 1597
+ C++C ++F + HLKRH RS KP + C +C++ F L RH H
Sbjct: 3 FVCEVCTRAFARQE----HLKRHYRSHTNEKP---YPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 399 FICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHIN-AHTGN 454
F+C++C + F H RH Y + + C C R FT + L H H+GN
Sbjct: 3 FVCEVCTRAFARQEHLKRH--YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 634 YECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHL-KIHEYN 687
+ C+ C + F + L H HT K + C +CN AF L RH KIH N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 994 ICKVCGAKI--KGNLQKHMLSHTGEKPFCCHICGKSL--KGNLKDHILKCHTG 1042
+C+VC + +L++H SHT EKP+ C +C ++ + L H K H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 1451 CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFG 1502
C VC + ++ ++ H R ++K Y C +C + FT + + +H H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 431 CDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRH 480
C+ C R F + +L H +HT Y C +C + F RR +L RH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF-----TRRDLLIRH 49
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1019 FCCHICGKSL--KGNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMRK-HNG 1070
F C +C ++ + +LK H + HT E+PY C +C +F + L H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 664 CHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKHGG 717
C VC AF L RH + H K Y C +C++ FT + RH H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH--TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 930 YQCQICKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVH 988
+ C++C ++FA Q LKRH + KP + C +C++ F + L +H +H
Sbjct: 3 FVCEVCTRAFAR----QEHLKRHYRSHTNEKP---YPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 751 SFHCDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIH 805
SF C+ C + F ++ +H R H N K + C LC+ F+ L +H KIH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHY-RSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 572 CPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGKQFTTLSYLDLH 617
C +C + FA + ++ H R H++ K Y C +C + FT L H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 301-
331) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
+GE+PY C+ CG F K YL VH R H GEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+GEKPY C+ CG+ F+++S H + H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1998 GERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
GE+PY C+ CG F K + VH R H +K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528-
560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKCDVC SF+ L VH R H GEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PYKCDVC SF+ +VH R H +K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ ++CD C F+ S L+ H HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y+CD C+K F +L+ H IHTG K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 368-
400) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG +F+ + L +H H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C+ CG+ F ARS+ H H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PYKC+ CG +F+ + ++H H +K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ ++C+ C F+++S L+ H TH+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603-
635) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C +CG SF K L VH + H GEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY+C +CG SF K VH + H +K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ +EC C K F + L H HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K YEC C K F K L H IHTG K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752-
784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C VCG +F + L VH R H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY+C VCG +F ++ SVH R H K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K YEC C K F +++LS H IH+G K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C CG+ F+ R + + H + H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 1005 NLQKHMLSHTGEKPFCCHICGKSL----KGNLKDHILKCHTGER-PYKC--DVCGSSFKD 1057
+L +H L+HTGEK F C G L K N+K H + H + Y C + CG +FK
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 1058 KWYLGVHMRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKH 1096
L VH H + PY C + C + F+ S H K H
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 1051 CGSSFKDKWYLGVHMRKHNGEKPYNC--DYCGQTFAARSTFTFHLKKH--EENGSVDFD 1105
CG+++ W L H+ KH GEKP+ C + C + F + T H H E+N + D D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 72/183 (39%), Gaps = 25/183 (13%)
Query: 895 IKTIERKFECDY--CKMKFKSKSFLSEHINTHTGNKPYQC--QICKKSFANKRSYQRDLK 950
+ + +++ C + C + L H+ HTG KP+ C + C+K F + R
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 951 RHKQLAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDK-----CHICKVCGAKIK-- 1003
H D C F K ++ KH N H K CH + CG K
Sbjct: 66 THTGEKNFTCDSD-----GCDLRFTTKANMKKHFNRFHNIKICVYVCHF-ENCGKAFKKH 119
Query: 1004 GNLQKHMLSHTGEKPFCC--HICGK--SLKGNLKDHILKCHTGERPYKCDVCGSSFKDK- 1058
L+ H SHT + P+ C C K SL LK H K H G K D C SF K
Sbjct: 120 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSC--SFVGKT 176
Query: 1059 WYL 1061
W L
Sbjct: 177 WTL 179
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRL--CDMSFSNKYQKKKHYSAFHKGMPFIPSFT 165
C + F +L L RH + H GE+N C CD+ F+ K KKH++ FH I +
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK--ICVYV 106
Query: 166 CPI--CQKIFKNKEWYLDHLSLHEEQL 190
C C K FK H H +QL
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQL 133
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGKSL----KGNLKAHILRCQGER--PYKC--DVCGSSFKD 2013
++ RH L+HTGEK F CD G L K N+K H R + Y C + CG +FK
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 2014 KKHFSVHIRNHGE 2026
VH +H +
Sbjct: 119 HNQLKVHQFSHTQ 131
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 1504 IKTIQRKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQC--QICNKSFGTRRNYRLHLK 1559
+ + +++ C F C + +N+ LQ H+ HTG KP+ C + C K F + HL
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH----HLT 61
Query: 1560 RH 1561
RH
Sbjct: 62 RH 63
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 844 CHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFE 903
C K +++ + +H H+ +K + CD G + + K ++ F IK
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCH 108
Query: 904 CDYCKMKFKSKSFLSEHINTHTGNKPYQC--QICKKSFANKRSYQRDLKRHKQLAGQLKP 961
+ C FK + L H +HT PY+C + C K F S LKRH+++
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF----SLPSRLKRHEKVHAGYPC 164
Query: 962 EDIHECKICHKTF 974
+ C KT+
Sbjct: 165 KKDDSCSFVGKTW 177
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 1454 CHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFEC 1513
C K +++ + H +K + CD G T + + K + F IK
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 1514 DFCKKKFYRNFDLQEHINTHTGNKPYQC--QICNKSFGTRRNYRLHLKRH 1561
+ C K F ++ L+ H +HT PY+C + C+K F + H K H
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 1302 CHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFE---- 1357
C K +++ + RH HT +K + CD G T + N+ K N+F
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKH------FNRFHNIKI 102
Query: 1358 CIY------CKKKYRRKFDLKEHINKHTGNKPYHC--QICKESFYTLKTYRGDLKRHEQL 1409
C+Y C K +++ LK H HT PY C + C + F + LKRHE++
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF----SLPSRLKRHEKV 158
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 52/207 (25%)
Query: 1361 CKKKYRRKFDLKEHINKHTGNKPYHC--QICKESFYTLKTYRGDLKRHEQLAEQSDEMHS 1418
C Y + + L+ H+ KHTG KP+ C + C++ F +L L RH
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH----HLTRHSLTHTGEKNFTC 75
Query: 1419 TSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYSTPRQMRIHLREAHSQK--K 1476
S D DL ++T M+ H H+ K
Sbjct: 76 DS----------DGCDLR---------------------FTTKANMKKHFNRFHNIKICV 104
Query: 1477 YAC--DVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFEC--DFCKKKFYRNFDLQEHINT 1532
Y C + CGK F N++ H+ T Q +EC + C K+F L+ H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQ------FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Query: 1533 HTGNKPYQCQICNKSFGTRRNYRLHLK 1559
H G Y C+ + + + L+LK
Sbjct: 159 HAG---YPCKKDDSCSFVGKTWTLYLK 182
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 255 SFTCDT--CDKPFDTIEKCRRHAIRMHMNPCKMFKCDI--CVASFLTPHKLKTHIKTKHR 310
+FTCD+ CD F T ++H R H ++ C C +F ++LK H + H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHT 130
Query: 311 TQLKELYTFECQH--CEDKFSTPFELNKH 337
QL +EC H C+ +FS P L +H
Sbjct: 131 QQL----PYECPHEGCDKRFSLPSRLKRH 155
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 48/177 (27%)
Query: 597 KRYMCDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYEC--DSCNKKFWSKRALSEH 652
KRY+C CG + L H H +K + C + C K F S L+ H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTG-------EKPFPCKEEGCEKGFTSLHHLTRH 63
Query: 653 MIIHTGIKEHQCHV--CNTAFYHIRSLSRH----------------------------LK 682
+ HTG K C C+ F ++ +H LK
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLK 123
Query: 683 IHEYNESKM--YKCP--VCSKMFTELYEMKRHRDHKHGGKC---HVCKICGATIKLF 732
+H+++ ++ Y+CP C K F+ +KRH G C C G T L+
Sbjct: 124 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1038 KCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNG----EKPYNCDYCGQTFAARSTFTFHL 1093
+ HTGE+PY C C +F+ K L +H ++++ + C CG+TF R+T H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 923 THTGNKPYQCQICKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAK 982
THTG KPY C C K+F K+ KR+ P C C KTF + ++A+
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP--NFVPAAF-VCSKCGKTFTRRNTMAR 65
Query: 983 HMNWVHG 989
H + G
Sbjct: 66 HADNCAG 72
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTR 1591
THTG KPY C C+K+F ++ +H KR+ P C C K F + + R
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP--NFVPAAF-VCSKCGKTFTRRNTMAR 65
Query: 1592 HMNFTHGDKCHG 1603
H D C G
Sbjct: 66 HA-----DNCAG 72
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1062 GVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEE 1098
G R H GEKPY C +C +TF + H K++ +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 655 IHTGIKEHQCHVCNTAFYHIRSLSRHLK-IHEYN-ESKMYKCPVCSKMFTELYEMKRHRD 712
HTG K + C C+ F + L H K H+ N + C C K FT M RH D
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 713 H 713
+
Sbjct: 69 N 69
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 752 FHCDTCGKYFRSRQICNKHIKRVHLNPT---KTFKCDLCSDRFSTSAKLKKHVD 802
+ C C K FR +Q+ + H KR H +P F C C F+ + +H D
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYH-DPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887-
919) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C+ CG +F K L H R H GEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ + C+ C F KS LS H THTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C+ CG+TF+ +S + H + H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY C+ CG +F K S H R H +K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y C+ C K F K LS H HTG K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc
Finger Protein 32
Length = 42
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+CD CG +F K L VH+R H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
EKPY CD CG+ F+ + + H++ H +G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNH 2024
E+PY+CD CG +F K VHIR H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ + CD C F K L HI HTG+ P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTG 658
+K Y CD C K F K +L H+ +HTG
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein Mbp-1
Length = 57
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLK 1094
Y C+ CG K L H+R H +PY+C YC +F + T H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 1510 KFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNYRLHLK 1559
K+ C+ C + + L++HI THT +PY C CN SF T+ N H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 901 KFECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRSYQRDLK 950
K+ C+ C ++ K S L +HI THT +PY C C SF K + + +K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 1355 KFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQICKESFYTLKTYRGDLKRHEQLAEQSD 1414
K+ C C + ++ LK+HI HT +PYHC C SF T +G+L +H + S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT----KGNLTKHMKSKAHSK 56
Query: 1415 E 1415
+
Sbjct: 57 K 57
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 1019 FCCHICGKSLK--GNLKDHILKCHTGERPYKCDVCGSSFKDKWYLGVHMR 1066
+ C CG K LK HI + HT RPY C C SFK K L HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 633 KYECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLK 682
KY C+ C + L +H+ HT ++ + C CN +F +L++H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 993 HICKVCGAKIK--GNLQKHMLSHTGEKPFCCHICGKSL--KGNLKDHI 1036
+IC+ CG + K L+KH+ +HT +P+ C C S KGNL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 1950 HVCKVCGAKIK--GNMKRHMLSHTGEKPFCCDICGKSL--KGNLKAHI 1993
++C+ CG + K +K+H+ +HT +P+ C C S KGNL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1976 FCCDICGKSLK--GNLKAHILRCQGERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
+ C+ CG K LK HI RPY C C SFK K + + H+++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region 592-
624) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F+ YL H R H GEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ ++C+ C F+ S+LS H HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 584-
616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KC CG +F+ +L H+R H GEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ F+C C K F +N L H+ HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+P+KC CG +F+ H + H+R H +K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 1016 EKPFCCHICGKSLKGN--LKDHILKCHTGERP 1045
EKPF C CGK+ + N L H L+ HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH-LRIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc
Finger Protein 32
Length = 41
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+GE+PY+C CG SF + L VH R H G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
+GEKPY C CG++F+ R + H + H +G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRHKRSA 1565
+G KPYQC+ C KSF R + +H + H S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1998 GERPYKCDVCGSSFKDKKHFSVHIRNH 2024
GE+PY+C CG SF + +VH R H
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1012 SHTGEKPFCCHICGKSL--KGNLKDHILKCHT-GERPYKCDVCGSSFKDKWYLGVHMRK 1067
+H+GEKP+ C+IC G +K HIL+ HT + C C + K LGVH+RK
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 1318 QVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINK 1377
+ H+ +K Y C IC +FT + + +H H+ KF C +C RK DL H+ K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1038 KCHTGERPYKCDVCGSSFKDKWYLGVHMRKHNGE--KPYNCDYCGQTFAARSTFTFHLKK 1095
+ H+GE+PY+C +C + F + +H+ + + E ++C +C A +S HL+K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 1062 GVHMRKHNGEKPYNCDYCGQTFAARSTFTFH-LKKHEEN 1099
G R H+GEKPY C C F T H L+KH EN
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 42
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLH-LKRHKRSAGQLKPEDIHECKICHKIFLENSRLT 1590
TH+G KPY+C IC+ F ++H L++H + + C C + S L
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF------HCPHCDTVIARKSDLG 62
Query: 1591 RHMNFTH 1597
H+ H
Sbjct: 63 VHLRKQH 69
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1969 SHTGEKPFCCDICGKSL--KGNLKAHILRCQGERPYK--CDVCGSSFKDKKHFSVHIR 2022
+H+GEKP+ C IC G +K HIL+ E K C C + K VH+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 284 KMFKCDICVASFLTPHKLKTHIKTKHRTQLKELYTFECQHCEDKFSTPFELNKHNESKH 342
K ++C IC A F +K HI KH + + F C HC+ + +L H +H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAK---FHCPHCDTVIARKSDLGVHLRKQH 69
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 491-
523) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
ERPY C VCG +F D+ L H + H GEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
ERPY C VCG +F D+ + H + H +K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640-
672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C VC +F K +L H + H GEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ +EC C F K+ L++H THTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ +EC C K F + L +H THTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY+C VC +F K H + H + H +K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K YEC C+K F K L++H HTG K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 199-
231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+ YKCDVCG F +L H R H GEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1511 FECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++CD C K+F ++ LQ H HTG KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+ YKCDVCG F H H R H +K
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 599 YMCDICGKQFTTLSYLDLHRKSHN 622
Y CD+CGK+F+ S+L H++ H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHT 36
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760-
792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG +F L H R H GEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781-
813) From Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C CG +F K L H R H GEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y C C K F K L++H IHTG K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C CG+ FA ++ T H + H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY+C CG +F K + + H R H +K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724-
756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+RPY+C CG +FK K L H R H GEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
+R +EC C FK+KS L H +HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544-
576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
ERP+KC+ CG SF +L H R H GEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like Domains(493-575)
Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1785 EQWRQLVAEKTK-LCPVCNK-EYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQC 1842
EQW++ + E+ + +CP CN T V ++KH+ + KC C+KQFK+ L
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 1843 HKQFVH 1848
H H
Sbjct: 73 HTMAEH 78
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631-
663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C CG +F D+ L H + H GEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 715-
747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C+ CG SF K +L H R H GEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PY C+ CG SF K H + H R H +K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 507-
539) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG + K+ L +H + H GE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311-
343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
T E+P++CD C SF+ + L H H GEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 893 GIIKTIERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
G T E+ F CD C F+ +S L+ H HTG KP
Sbjct: 4 GSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K + CD+C+K F + AL+ H +IHTG K
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 1502 GIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
G T ++ F CD C K F + L H HTG KP
Sbjct: 4 GSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 435-
467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C CG SF K L VH R H GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTG 658
+K YEC C K F K L H IHTG
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 556-
588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+CDVC +F L H R H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ +ECD C+K F + L +H H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ +ECD C+ F + L++H H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K YECD C K F +L++H +H+G K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 369-
401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KC CG S+ + +L H R H GEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 551-
583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E PY+C CG +F K+ L H R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 1354 NKFECIYCKKKYRRKFDLKEHINKHTGNKP 1383
N +EC C K + RK+ L H H G KP
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
+ +EC C K F R + L H TH G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 495-
525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+PY C+ CG +F+ K YL +H R H GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 596 IKRYMCDICGKQFTTLSYLDLHRKSHN 622
+K Y+C+ CGK F + SYL +H ++H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2000 RPYKCDVCGSSFKDKKHFSVHIRNH 2024
+PY C+ CG +F+ K + +H R H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 1051 CGSSFKDKWYLGVHMRKHNGEKPYNC--DYCGQTFAARSTFTFHLKKH--EENGSVDFD 1105
CG+++ W L H+ KH GEKP+ C + C + F + T H H E+N + D D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 108 CTEVFENLTLLRRHMRVKHPGEQNLPCRL--CDMSFSNKYQKKKHYSAFH 155
C + F +L L RH + H GE+N C CD+ F+ K KKH++ FH
Sbjct: 41 CEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 1024 CGKSLKGN--LKDHILKCHTGERPYKC--DVCGSSFKDKWYLGVHMRKHNGEKPYNCDYC 1079
CG + N L+ H+ K HTGE+P+ C + C F +L H H GEK + CD
Sbjct: 11 CGAAYNKNWKLQAHLSK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 1080 G 1080
G
Sbjct: 70 G 70
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 1509 RKFECDF--CKKKFYRNFDLQEHINTHTGNKPYQC--QICNKSFGTRRNYRLHLKRH 1561
+++ C F C + +N+ LQ H++ HTG KP+ C + C K F + HL RH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLH----HLTRH 54
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1361 CKKKYRRKFDLKEHINKHTGNKPYHC--QICKESFYTL 1396
C Y + + L+ H++KHTG KP+ C + C++ F +L
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSL 48
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 1922 YLCDL--CSKVFLEHKDMIRHREWVHGDKCHVCKVCGAKIKG-----NMKRHMLSHTGEK 1974
Y+C C + ++ + H G+K CK G + KG ++ RH L+HTGEK
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLTHTGEK 62
Query: 1975 PFCCDICGKSL----KGNLKAHILR 1995
F CD G L K N+K H R
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNR 87
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 397-
429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC VCG +F+ +L H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 612-
644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P++C CG SF L H R H GEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1997 QGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
GE+PY C VCG FK K S H+R+H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+GE+PY C VCG FK K + H+R H+G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKHEENGSV 1102
+GEKPY+C CG F + ++H++ H+ GSV
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD--GSV 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 754 CDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIH 805
C CG+ F S+ +H++ +H + F C C F +S L +H++K H
Sbjct: 31 CPVCGESFASKGAQERHLRLLH--AAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1797 LCPVCNKEYATPVTMRKHLREVHVSKKKFKCDLCQKQFKASRSLQCHKQFVH 1848
LCPVC + +A+ +HLR +H + + F C C F +S L H H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAA-QVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 35.0 bits (79), Expect = 0.38, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 835 TAQSKDCPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSH 891
+A+ CPVC +++++ + +HLR +H++Q + C C F S+ +++H H
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRHINKCH 80
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 1048 CDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKK 1095
C VCG SF K H+R + + + C YC TF + T H+ K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 34.3 bits (77), Expect = 0.76, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 1451 CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSH 1500
CPVC +++++ HLR H+ + + C C F S+ +++H H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 932 CQICKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAKHMNWVHGDK 991
C +C +SFA+K + +R L+ L + CK C TF L +H+N K
Sbjct: 31 CPVCGESFASKGAQERHLR-------LLHAAQVFPCKYCPATFYSSPGLTRHIN-----K 78
Query: 992 CH 993
CH
Sbjct: 79 CH 80
Score = 33.9 bits (76), Expect = 1.00, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTNRVNIHKACVHSS 1351
CPVC +++++ RHLR +H +Q + C C F S+ + H H S
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCHPS 82
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 991 KCHICKVCGAKI--KGNLQKHMLSHTGEKPFCCHICGKSLKGN--LKDHILKCHTGE 1043
+CH+C VCG KG ++H+ + F C C + + L HI KCH E
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 1541 CQICNKSFGTRRNYRLHLKRHKRSAGQLKPEDIHECKICHKIFLENSRLTRHMNFTHGDK 1600
C +C +SF ++ HL+ L + CK C F + LTRH+N K
Sbjct: 31 CPVCGESFASKGAQERHLR-------LLHAAQVFPCKYCPATFYSSPGLTRHIN-----K 78
Query: 1601 CHGATN 1606
CH + N
Sbjct: 79 CHPSEN 84
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 1322 SQKRYLCDICGKQFTSTNRVNIHKACVHSSTGNKFECIYCKKKYRRKFDLKEHINK 1377
S + +LC +CG+ F S H +H++ F C YC + L HINK
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAA--QVFPCKYCPATFYSSPGLTRHINK 78
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 863 SSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFLSEHIN 922
+S + ++C +CG+ F S +H H + F C YC F S L+ HIN
Sbjct: 24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQV------FPCKYCPATFYSSPGLTRHIN 77
Score = 32.3 bits (72), Expect = 3.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 400 ICDICGKQFTSNIHASRHKNYAHSRDRQKMECDYCKRKFTCKRYLAEHIN 449
+C +CG+ F S RH H+ Q C YC F L HIN
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHA--AQVFPCKYCPATFYSSPGLTRHIN 77
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 963 DIHECKICHKTFLEKGSLAKHMNWVHGDKCHICKVCGA 1000
+ H C +C ++F KG+ +H+ +H + CK C A
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPA 64
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRHKNYAHSRDRQ 427
CP+C + F + HLR +H + F C C F S+ +RH N H + +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQ--VFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 1473 SQKKYACDVCGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
S + + C VCG+ F S +H H + F C +C FY + L HIN
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQV------FPCKYCPATFYSSPGLTRHIN 77
Score = 30.8 bits (68), Expect = 7.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 105 CRICTEVFENLTLLRRHMRVKHPGEQNLPCRLCDMSFSNKYQKKKHYSAFH 155
C +C E F + RH+R+ H Q PC+ C +F + +H + H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAA-QVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 396-
428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F +L H R H GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
E+PYKC+ CG F H + H R H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668-
700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C CG +F +L H R H GEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1475 KKYACDVCGKQFTSTNRVSQHKAHSHF 1501
K YACD+CGK++ + +S H AHSH
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHL 32
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 866 KKYVCDMCGKQFTSNNRVSQHKAYSHF 892
K Y CD+CGK++ + +S H A+SH
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHL 32
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+G+R Y+C CG SF+ K L +H R H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581-
609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+GE+PY+C CG +F K L +H R H GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRHKRSAG 1566
+G KPY+C C K+FG + +H + H +G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+GEKPY C CG+ F +S H + H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1998 GERPYKCDVCGSSFKDKKHFSVHIRNH 2024
GE+PY+C CG +F K +H R H
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607-
639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P++C C +F K L VH R H GEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ FEC C+ F +KS L H THTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ FEC C+K F +L H THTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 626-
654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C++CG+ F+ L H+R H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 660 KEHQCHVCNTAFYHIRSLSRHLKIH 684
K + C +C T F H+++L HL+IH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG +F+ L H H GEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y+C+ C K F + L+ H +IHTG K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 547-
579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
ER Y+C CG +F K L +H R H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
ER +EC C F KS LS H H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
++ YEC C K F K LS H IH G K
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 283-
315) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KCD+CG SF + L H H EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKP+ CD CG++F RS H H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 273-
303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+GE+P+ C C +F K YL VH + H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1998 GERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
GE+P+ C C +F K + VH + H E+K
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 725-
757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY CD CG +F L H R H GEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY CDYCG+ F + H + H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ + CD+C K F + +L H HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ + CDYC F + L H HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 508-
540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F +L H R H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y+C+ C K F L+ H IHTG+K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+PY+C+ CG +F L H R H GEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479-
511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P++C+ CG F +L H R H GEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ F+C+ C K+F +N L H HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ F+C+ C +F S L H HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563-
595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KC+ CG F L H R H GEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ F+C+ C K+F +N L H HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KC CG F + L VH + H GEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 48
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 1048 CDVCGSSFKDKWYLGVHMRKHNGEKPYN 1075
C++CG F+D ++L H H+GEKPY+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 648-
680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F +L H R H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 628-
660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
ERP+KC+ CG F + H + H+R H +K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
ERP+KC+ CG F + +L H+R H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
E+P+ C+ CG+ F RS HL+ H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 687-
719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
ER Y+C CG +F K L +H R H GEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
ER +EC C F KS L H HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
+R +EC C K F R L H HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 637-
667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+GE+PY C+ CG +F K L VH H G KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y C+ C K F K L H +HTG+K
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+GEKPY+C+ CG+ F +S H H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 564-
596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F +L H H GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K YEC+ C K F + +L+ H IHTG K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
EKPY C+ CG+ F+ RS+ T H H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY+C+ CG +F + L H H G+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E+ +EC+ C F +S L+ H HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1017 KPFCCHICGKSLK--GNLKDHILKCHTGERPYKCDV 1050
KP+ C CGK +L HI + HT ERP+KC V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDI 1330
C C K +S P + H++QVHTS++ + C +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region 659-
691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
E+PYKC CG +F K L +H + H GE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+ C CG +F D L H R H GEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+GE+PY C CG +F L +H R H GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 597 KRYMCDICGKQFTTLSYLDLHRKSHN 622
K Y+C CGK FT S L +HR+ H
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+GEKPY C CG+ F S + H + H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 255-
287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C+ CG +F L H R H GEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ + C+ C K F + LQEH HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y C+ C K F L EH IHTG K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC CG F+ +L H H GEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 809-
841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNHGED 2027
E+PY C+VCG +F H + H+R H ++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+PY C+VCG +F +L H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKHEE 1098
EKPY+C+ CG+ F + HL+ H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (699-
729) From Zinc Finger Protein 473
Length = 44
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYN 1075
+G++P C+ CG +F+ L H R H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
E+PYKC+ CG + + L +H R H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 1051 CGSSFKDKWYLGVHMRKHNGEKPYNCDY--CGQTFAARSTFTFHLKKH 1096
CG ++ +L H R H GEKP++C + C + FA + H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 1516 CKKKFYRNFDLQEHINTHTGNKPYQCQI--CNKSFGTRRNYRLHLKRHKRS 1564
C K ++++ L+ H THTG KP+ C C + F L RH+R+
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE----LSRHRRT 71
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 908 KMKFKSKSFLSEHINTHTGNKPYQCQI--CKKSFANKRSYQRDLKRH 952
K FKS S L H THTG KP+ C C++ FA R + H
Sbjct: 27 KTYFKS-SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 1402 DLKRHEQLA-EQSDEMHSTSKFQNKIKKPLDTGDLSWEEWNELVLSGTKKCPVCHKTYST 1460
+LKR+ QL EQ + + K + LD + +S CP+C +S+
Sbjct: 28 ELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFV-CPLCLMPFSS 86
Query: 1461 PRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSH 1500
++ H+R +++ C VC K+FTST+ H H
Sbjct: 87 SVSLKQHIR--YTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQH 886
CP+C +S+ S+++H+R ++ VC +C K+FTS + H
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTK---VCPVCKKEFTSTDSALDH 119
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTSNIHASRH 417
CPLC F+++ ++ H+R + K +C +C K+FTS A H
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTK----VCPVCKKEFTSTDSALDH 119
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 1770 MVHKNQPIDTGDFSLEQWRQLVAEKTK--LCPVCNKEYATPVTMRKHLREVHVSKKKFKC 1827
++H Q +D + +R L ++ +CP+C +++ V++++H+R +K C
Sbjct: 50 LIHNPQLLDESSY---LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK---VC 103
Query: 1828 DLCQKQFKASRS 1839
+C+K+F ++ S
Sbjct: 104 PVCKKEFTSTDS 115
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTN 1339
CP+C +S+ ++++H+R ++ +C +C K+FTST+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTK---VCPVCKKEFTSTD 114
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 423-
455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
E+PYKC CG +K + L H R H GEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 658 GIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRH 710
G ++C VC+ + HI + RH K+Y CP C K FT M H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 696-
728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC CG +F D H R H G++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 1276 EPMDTGDYTLEE--YNKIVASGSKDCPVCHKTY-STPKTMRRHLRQVHTSQKRYLCDICG 1332
EP +LEE Y +IV GS CP C T + +++H+ + Q+ + C CG
Sbjct: 12 EPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCG 69
Query: 1333 KQFTSTNRVNIHKACVHSS 1351
KQ S + H H+S
Sbjct: 70 KQLRSLAGMKYHVMANHNS 88
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 815 KKNEPLDTGDYTLEQWN-ELVTAQSKDCPVCHKTY-STPKSMRKHLREVHSSQKKYVCDM 872
+K P+ EQW E+V S CP C T + ++KH+ Q+ + C
Sbjct: 10 RKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHH 67
Query: 873 CGKQFTSNNRVSQHKAYSH 891
CGKQ S + H +H
Sbjct: 68 CGKQLRSLAGMKYHVMANH 86
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 549 PLAIDGGLSLEEYQQIVATKSKQCPICEKIF-AAPKQMRMHLRHVHSSIKRYMCDICGKQ 607
P+ G L + Y +IV S CP C+ + + ++ H+ + + + C CGKQ
Sbjct: 14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM--FTCHHCGKQ 71
Query: 608 FTTLSYLDLHRKSHNETV 625
+L+ + H +++ ++
Sbjct: 72 LRSLAGMKYHVMANHNSL 89
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
++P++C CG SF+ K L H R H GEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 1045 PYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
PYKC C SF K L VH R H EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411-
441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+PY+C+ C +F K L VH R H GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1537 KPYQCQICNKSFGTRRNYRLHLKRHKRSAG 1566
KPY+C C K+F T+ N +H + H +G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESG 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+GE PY+C CG +F K L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 385-
413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+G++PY C+ CG +F K L +H R H GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1069 NGEKPYNCDYCGQTFAARSTFTFHLKKH 1096
+G+KPY C+ CG+ F +S H + H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
+PYKC C + K L VH+RKH GEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 367-
399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PY C CG SF+ L H R H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 312-
344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
+++++C+ C K F RN L +H HTG KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K+Y+C+ C K F LS+H IHTG K
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+ YKC+ CG F L H + H GEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 899 ERKFECDYCKMKFKSKSFLSEHINTHTGNKP 929
E++++C+ C F S LS+H HTG KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 340-
372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F +L H H GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 1072 KPYNCDYCGQTFAARSTFTFHLKKHEEN 1099
KPY CDYCG++F+ ++ HL+ H+ +
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 2000 RPYKCDVCGSSFKDKKHFSVHIRNHGEDK 2028
+PY+CD CG SF D H+ H DK
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 719-
751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P++C CG SF L VH R H GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 426-
458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC CG +F +L H R H G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 1508 QRKFECDFCKKKFYRNFDLQEHINTHTGNKP 1538
++ ++C C K F+R+ L EH HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 395-
427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+P+KC+ CG F H R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 859-
889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
E+PY+C CG +F L VH R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1502 GIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTG 1535
G T ++ +EC C K F RN L H TH+G
Sbjct: 4 GSSGTREKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 732-
764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
++PYKC+ CG F +L H H GEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 519-
551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
E+PYKC CG SF K L +H + H GE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 598-
626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG+ F +L H+ H G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1999 ERPYKCDVCGSSFKDKKHFSVHIRNH 2024
E+PYKC+ CG+ F H H+ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 1997 QGERPYKCDVCGSSFKDKKHFSVHIRNH 2024
GE+PY C CG +F K HF H R H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGE 1071
+GE+PY C CG +F K + H R H GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+PY C C +F K L VH R H G KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 284-
316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
T E+PYKC CG +F+ + L H H GEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 630 EDKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
++K Y+C C K F ++ L+ H +IHTG K
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
TG KP+QC C++SF + LH KRH
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 601 CDI--CGKQFTTLSYLDLHRKSHNETVKRKEEDKKYECD--SCNKKFWSKRALSEHMIIH 656
CD CG+ F+ YL+ H+K + K + C +C K F K+ L EHM +H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKK------YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 657 TGIKEHQC 664
+ +++ C
Sbjct: 64 SDTRDYIC 71
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 863 SSQKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECD--YCKMKFKSKSFLS 918
S CD CG+ F++ ++ HK Y H ++ F C C F K L
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH-----IHQKSFSCPEPACGKSFNFKKHLK 57
Query: 919 EHINTHTGNKPYQCQICKKS 938
EH+ H+ + Y C+ S
Sbjct: 58 EHMKLHSDTRDYICEFSGPS 77
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 463-
495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E P+ C CG F K L +H + H GE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 641-
673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
T E P+KC+ CG +F +L H H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 425-
457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1071 EKPYNCDYCGQTFAARSTFTFHLKKH 1096
E+PY C+ CG+ F S HLK+H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 631 DKKYECDSCNKKFWSKRALSEHMIIHTGIK 660
+K Y+C+ C K F +R L H ++HTG K
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
E+PYKC+ CG F + L H H GEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 863 SSQKKYVCDMCGKQFTSNNRVSQHK 887
SS K ++CDMCGK+F S + HK
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHK 29
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains Of
Zinc Finger Protein 692
Length = 78
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHN---GEKPYNCDYCGQTFAARSTFTFHLKK 1095
+G +C++CG + + K L H RKH + C++CG+ F + H K
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1450 KCPVCHKTYSTPRQMRIHLR---EAHSQKKYACDVCGKQFTSTNRVSQHKAHSH 1500
+C +C T + H R E + ++ C+ CGK+F + V+ H++ SH
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEK 1072
+P +C +CG +F L H+R+H GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 441-
469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1041 TGERPYKCDVCGSSFKDKWYLGVHMRKHNG 1070
+GE+PY C CG +F K L VH H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 632 KKYECDSCNKKFWSKRALSEHMIIHTGIK 660
K Y C+ C K F +L+ H +IHTG K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+PY C+ CG +F L H H GEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
TG KP+QC C+ SF + LH KRH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1043 ERPYKCDVCGSSFKDKWYLGVHMRKHNG 1070
E+PY+C+ CG +F K L VH R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 632 KKYECDSCNKKFWSKRALSEHMIIHTGIK 660
K +EC C K F K LS H IHTG K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 1356 FECIYCKKKYRRKFDLKEHINKHTGNKP 1383
FEC C K + RK L H HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 902 FECDYCKMKFKSKSFLSEHINTHTGNKP 929
FEC C F KS LS H HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
++C CG +F K L +H + H GEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 415-
447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKHNGEKP 1073
+KC+ C +F L VH R H GEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor Suppressor
Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1511 FECDFCKKKFYRNFDLQEHINTHTGNK 1537
F+C C++KF R+ L+ H THTG K
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis Zinc
Finger Protein
Length = 28
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 1044 RPYKCDVCGSSFKDKWYLGVHMRKHNG 1070
RPY C VCG F K + H R H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Fog-1
Length = 35
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1534 TGNKPYQCQICNKSFGTRRNYRLHLKRH 1561
+G +P+ C+IC +F T+ N HLK H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,776,434
Number of Sequences: 62578
Number of extensions: 2632799
Number of successful extensions: 12343
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6861
Number of HSP's gapped (non-prelim): 4497
length of query: 2028
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1914
effective length of database: 7,839,445
effective search space: 15004697730
effective search space used: 15004697730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)