RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4686
(2028 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 1962 NMKRHMLSHTGEKPFCCDICGKS 1984
N++RHM +HTGEKP+ C +CGKS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 35.8 bits (83), Expect = 0.005
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 1005 NLQKHMLSHTGEKPFCCHICGKS 1027
NL++HM +HTGEKP+ C +CGKS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 34.7 bits (80), Expect = 0.014
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1525 DLQEHINTHTGNKPYQCQICNKSF 1548
+L+ H+ THTG KPY+C +C KSF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 33.5 bits (77), Expect = 0.037
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 1060 YLGVHMRKHNGEKPYNCDYCGQTFA 1084
L HMR H GEKPY C CG++F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 33.1 bits (76), Expect = 0.043
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 917 LSEHINTHTGNKPYQCQICKKSFAN 941
L H+ THTG KPY+C +C KSF++
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.1 bits (76), Expect = 0.048
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1370 DLKEHINKHTGNKPYHCQICKESFYT 1395
+L+ H+ HTG KPY C +C +SF +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.6 bits (72), Expect = 0.17
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 1031 NLKDHILKCHTGERPYKCDVCGSSFK 1056
NL+ H+ + HTGE+PYKC VCG SF
Sbjct: 1 NLRRHM-RTHTGEKPYKCPVCGKSFS 25
Score = 30.4 bits (69), Expect = 0.51
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 1988 NLKAHILRCQGERPYKCDVCGSSFK 2012
NL+ H+ GE+PYKC VCG SF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 29.3 bits (66), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 1312 MRRHLRQVHTSQKRYLCDICGKQFTS 1337
+RRH+R HT +K Y C +CGK F+S
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 648 ALSEHMIIHTGIKEHQCHVCNTAF 671
L HM HTG K ++C VC +F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 853 SMRKHLREVHSSQKKYVCDMCGKQFTS 879
++R+H+R H+ +K Y C +CGK F+S
Sbjct: 1 NLRRHMR-THTGEKPYKCPVCGKSFSS 26
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 676 SLSRHLKIHEYNESKMYKCPVCSKMFT 702
+L RH++ H K YKCPVC K F+
Sbjct: 1 NLRRHMRTHT--GEKPYKCPVCGKSFS 25
Score = 27.0 bits (60), Expect = 6.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 118 LRRHMRVKHPGEQNLPCRLCDMSFSN 143
LRRHMR H GE+ C +C SFS+
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 585 MRMHLRHVHSSIKRYMCDICGKQFTT 610
+R H+R H+ K Y C +CGK F++
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 39.3 bits (91), Expect = 0.019
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 21/72 (29%)
Query: 1450 KCPV--CHKTYSTPRQMRIHLREAH-------------------SQKKYACDVCGKQFTS 1488
KCPV C+K Y ++ H+ H K Y C+VC K++ +
Sbjct: 351 KCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN 410
Query: 1489 TNRVSQHKAHSH 1500
N + H+ HSH
Sbjct: 411 LNGLKYHRKHSH 422
Score = 38.5 bits (89), Expect = 0.031
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 20/71 (28%)
Query: 841 CPV--CHKTYSTPKSMRKHLREVHSSQ------------------KKYVCDMCGKQFTSN 880
CPV C+K Y ++ H+ H +Q K Y C++C K++ +
Sbjct: 352 CPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNL 411
Query: 881 NRVSQHKAYSH 891
N + H+ +SH
Sbjct: 412 NGLKYHRKHSH 422
Score = 38.5 bits (89), Expect = 0.039
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 1474 QKKYACDV--CGKQFTSTNRVSQHKAHSHFGIIKTIQRKFECDFCKKKFYRNFDLQEHIN 1531
K Y C V C K++ + N + H H H +K + N ++
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGH---------------QNQKLHENPSPEKMNI 391
Query: 1532 THTGNKPYQCQICNKSFGTRRNYRLHLK 1559
+KPY+C++C+K + + H K
Sbjct: 392 FSAKDKPYRCEVCDKRYKNLNGLKYHRK 419
Score = 35.1 bits (80), Expect = 0.40
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 630 EDKKYECD--SCNKKFWSKRALSEHMII-HTGIKEHQCHVCNTAFYHIRSLSRHLKIHEY 686
+ K Y+C CNKK+ ++ L HM+ H K H+ N + + S
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHE----NPSPEKMNIFSA------- 394
Query: 687 NESKMYKCPVCSKMFTELYEMKRHRDHKH 715
+ K Y+C VC K + L +K HR H H
Sbjct: 395 -KDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 34.3 bits (78), Expect = 0.64
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 32/152 (21%)
Query: 800 HVDKIHFTPEFQEPSKKNEPLDTGDYTLEQWNELVTAQSKDCPVCHKTYSTPKSMRKHLR 859
+ F EF S N+ + G T E + P C + S K R
Sbjct: 281 EESSLGFDYEFIHKSVGNKEIRGGISTGE------MIDVRKLP-CTNSSSNGKLAHGGER 333
Query: 860 EVHSS--------QKKYVCDM--CGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKM 909
+ + K Y C + C K++ + N + H + H E
Sbjct: 334 NIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPE------ 387
Query: 910 KFKSKSFLSEHINTHTGNKPYQCQICKKSFAN 941
K F ++ +KPY+C++C K + N
Sbjct: 388 --KMNIFSAK-------DKPYRCEVCDKRYKN 410
Score = 32.8 bits (74), Expect = 2.1
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 453 GNTIYGCRI--CKKTFLYTNGLRRHILSRHKD--TDVVILNEVKDIFPSHLQSYQIKCRY 508
Y C + C K + NGL+ H+L H++ E +IF + + Y +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPY--RCEV 403
Query: 509 CARTFSTQNDLKEHVSSVH 527
C + + N LK H H
Sbjct: 404 CDKRYKNLNGLKYHRKHSH 422
Score = 32.4 bits (73), Expect = 2.7
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 1042 GERPYKCDV--CGSSFKDKWYLGVHMR---------------KHNG----EKPYNCDYCG 1080
+PYKC V C +K++ L HM K N +KPY C+ C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 1081 QTFAARSTFTFHLK 1094
+ + + +H K
Sbjct: 406 KRYKNLNGLKYHRK 419
Score = 32.0 bits (72), Expect = 3.3
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 20/78 (25%)
Query: 562 QQIVATKSKQCPI--CEKIFAAPKQMRMHLRHVHSSI------------------KRYMC 601
++ K +CP+ C K + ++ H+ H H + K Y C
Sbjct: 342 LKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRC 401
Query: 602 DICGKQFTTLSYLDLHRK 619
++C K++ L+ L HRK
Sbjct: 402 EVCDKRYKNLNGLKYHRK 419
Score = 31.6 bits (71), Expect = 5.0
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 926 GNKPYQCQI--CKKSFANKRSYQRDLKRHKQLAGQLKPEDIHECKICHKTFLEKGSLAKH 983
KPY+C + C K + N Q LK H L G H+ + H+ + K
Sbjct: 346 DGKPYKCPVEGCNKKYKN----QNGLKYHM-LHG-------HQNQKLHENPSPE----KM 389
Query: 984 MNWVHGDKCHICKVCGAKIKGN 1005
+ DK + C+VC + K
Sbjct: 390 NIFSAKDKPYRCEVCDKRYKNL 411
Score = 30.8 bits (69), Expect = 8.8
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 23/81 (28%)
Query: 1010 MLSHTGEKPFCCHI--CGKSLKGN--LKDHILKCHTG------------------ERPYK 1047
ML KP+ C + C K K LK H+L H ++PY+
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 1048 CDVCGSSFKDKWYLGVHMRKH 1068
C+VC +K+ L H RKH
Sbjct: 401 CEVCDKRYKNLNGLKYH-RKH 420
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 35.2 bits (81), Expect = 0.088
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 547 RYPLAIDGGLSLEEYQQIVATKSKQCPICEKIFAAPKQMRMHLRHVHSSIKRYMCDICGK 606
P +D L + A CP+C F++ ++ H+R+ S C +CGK
Sbjct: 51 YNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKV---CPVCGK 107
Query: 607 QFT-TLSYLDLHRKSHN 622
+F T S LD K HN
Sbjct: 108 EFRNTDSTLDHVCKKHN 124
Score = 35.2 bits (81), Expect = 0.089
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 1451 CPVCHKTYSTPRQMRIHLREAHSQKKYACDVCGKQFTSTNRVSQHKAHSH 1500
CP+C +S+ ++ H+R K C VCGK+F +T+ H H
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDHVCKKH 123
Score = 34.1 bits (78), Expect = 0.20
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 841 CPVCHKTYSTPKSMRKHLREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSH 891
CP+C +S+ S+++H+R S+ VC +CGK+F + + H H
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSK---VCPVCGKEFRNTDSTLDHVCKKH 123
Score = 32.9 bits (75), Expect = 0.47
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVHTSQKRYLCDICGKQFTSTN 1339
CP+C +S+ ++++H+R S+ C +CGK+F +T+
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSKV---CPVCGKEFRNTD 113
Score = 32.2 bits (73), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 371 CPLCTKIFTTAKHMRVHLRSVHNGKERKFICDICGKQFTS 410
CPLC F+++ ++ H+R E +C +CGK+F +
Sbjct: 76 CPLCLMPFSSSVSLKQHIRY----TEHSKVCPVCGKEFRN 111
Score = 30.6 bits (69), Expect = 2.8
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 431 CDYCKRKFTCKRYLAEHINAHTGNTIYGCRICKKTFLYTNGLRRHILSRH 480
C C F+ L +HI + + C +C K F T+ H+ +H
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDHVCKKH 123
Score = 30.2 bits (68), Expect = 3.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 134 CRLCDMSFSNKYQKKKH--YSAFHKGMPFIPSFTCPICQKIFKNKEWYLDHL 183
C LC M FS+ K+H Y+ K CP+C K F+N + LDH+
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSK--------VCPVCGKEFRNTDSTLDHV 119
Score = 30.2 bits (68), Expect = 4.9
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 659 IKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYKCPVCSKMFTELYEMKRHRDHKH 715
+ + C +C F SL +H++ E+++ CPVC K F H KH
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK----VCPVCGKEFRNTDSTLDHVCKKH 123
Score = 29.5 bits (66), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 902 FECDYCKMKFKSKSFLSEHINTHTGNKPYQCQICKKSFANKRS 944
+ C C M F S L +HI +K C +C K F N S
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDS 114
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.7 bits (67), Expect = 0.75
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1539 YQCQICNKSFGTRRNYRLHLKRH 1561
Y+C C K F ++ R H++ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 3.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 2002 YKCDVCGSSFKDKKHFSVHIRNH 2024
Y+C CG FK K H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 3.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 634 YECDSCNKKFWSKRALSEHMIIH 656
Y C C K F SK AL EHM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 3.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKH 1068
Y+C CG FK K L HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 4.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 599 YMCDICGKQFTTLSYLDLHRKSH 621
Y C CGK F + S L H ++H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 902 FECDYCKMKFKSKSFLSEHINTH 924
+ C C FKSKS L EH+ TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 164 FTCPICQKIFKNKEWYLDHLSLH 186
+ CP C K+FK+K +H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|172497 PRK13996, PRK13996, potassium-transporting ATPase subunit C;
Provisional.
Length = 197
Score = 33.3 bits (76), Expect = 0.79
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 336 KHNESKHEKGRKLNPETGGYTYEEYKEVVVSKSKQCPLCTKIFTTAKHMRV-HLRSVHNG 394
+ + KH GR +N +TG + K++ S +K + RV +R+ H
Sbjct: 58 QFTDEKHLWGRIMNIDTGTFVDANGKKLAYSAPSNLSPASKEYEALVQERVEKIRANHPE 117
Query: 395 KERKFI 400
++ K I
Sbjct: 118 QDEKPI 123
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This family
contains two copies of a C2H2-like zinc finger domain.
Length = 100
Score = 30.7 bits (70), Expect = 1.7
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 1298 DCPVCHKTYSTPKTMRRHLRQVHT---SQKRYLCDICGKQFTSTNRVNIHKACVHSSTGN 1354
DC C+ T T + H+ + H ++ YL D+ G +N + +H
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEG-------LLNYLREKIH----E 49
Query: 1355 KFECIYCKKKYRRKFDLKEHINKHTGNKPYHCQI 1388
EC+YC K+++ L++H+ HC+I
Sbjct: 50 GNECLYCGKQFKSLEALRQHMRDKG-----HCKI 78
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 29.6 bits (66), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1889 CPICKKGFIALKHMKTHLKKH 1909
CPIC + +I K M THL+KH
Sbjct: 8 CPICGEIYIKRKSMITHLRKH 28
Score = 28.5 bits (63), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 571 QCPICEKIFAAPKQMRMHLRHVHSSIKRYMC 601
+CPIC +I+ K M HLR ++++K C
Sbjct: 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNC 37
Score = 28.1 bits (62), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1074 YNCDYCGQTFAARSTFTFHLKKHEEN 1099
Y C CG+ + R + HL+KH N
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTN 31
>gnl|CDD|169401 PRK08359, PRK08359, transcription factor; Validated.
Length = 176
Score = 31.8 bits (72), Expect = 2.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1974 KPFCCDICGKSLKGNLKAHILRCQGERPYKCDVCGSSFKDKK 2015
KP C+ICG ++G H +R +G CD C + KK
Sbjct: 5 KPRYCEICGAEIRG--PGHRIRIEGAELLVCDRCYEKYGRKK 44
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only].
Length = 467
Score = 32.4 bits (73), Expect = 2.8
Identities = 68/485 (14%), Positives = 115/485 (23%), Gaps = 76/485 (15%)
Query: 634 YECDSCNKKFWSKRALSEHMIIHTGIKEHQCHVCNTAFYHIRSLSRHLKIHEYNESKMYK 693
C +C F L+ H+ HTG K QC
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSG------------------------- 68
Query: 694 CPVCSKMFTELYEMKRHRDHKHGGKCHVCKICGATIKLFTELEEKEDSSFERKKSKDSFH 753
C K F+ E+ RH H + SS +
Sbjct: 69 ---CDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSS 125
Query: 754 CDTCGKYFRSRQICNKHIKRVHLNPTKTFKCDLCSDRFSTSAKLKKHVDKIHFTPEFQEP 813
+ I + NP + S S + + P
Sbjct: 126 HSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLS 185
Query: 814 SKKNEPLDTGDYTLEQWNELVTAQSK----------------DCPVCHKTYSTPKSMRKH 857
+ + T + + + L ++ S + +
Sbjct: 186 LLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSP 245
Query: 858 LREVHSSQKKYVCDMCGKQFTSNNRVSQHKAYSHFGIIKTIERKFECDYCKMKFKSKSFL 917
S + + + S S K + C + F S L
Sbjct: 246 SSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPL 305
Query: 918 SEHINT-HTGNKPYQCQICKKSFANKRSYQRD-LKRHKQLAGQLKPEDIHECKICHKTFL 975
+ H+ + + + + C S K + D LKRH L + P + K+ + +
Sbjct: 306 TRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP---AKEKLLNSSSK 362
Query: 976 EKGSLAKHMNWVHGDKCHICKVCGAKIKGNLQKHMLSHTGEKPFCCHICGKSLKGNLKDH 1035
L N + N +K ++ +D
Sbjct: 363 FSPLLN---NEPPQSLQQYKDLK------NDKKSETLSN-----------SCIRNFKRDS 402
Query: 1036 ILKCHT------GERPYKCDVCGSSFKDKWYLGVHMRKHNGEKPYNCDYCGQTFAARSTF 1089
L H K C SF + L H + H P C +F
Sbjct: 403 NLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILK-SFRRDLDL 461
Query: 1090 TFHLK 1094
+ H K
Sbjct: 462 SNHGK 466
Score = 32.4 bits (73), Expect = 3.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1507 IQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQC--QICNKSFGTRRNYRLHLKRH 1561
R C C F R L HI +HTG KP QC C+KSF HL+ H
Sbjct: 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTH 86
>gnl|CDD|238278 cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat shock), the Cys
are reversibly oxidized to disulfide bonds, which causes
the chaperone activity to be turned on. Hsp33 is
homodimeric in its functional form.
Length = 275
Score = 31.8 bits (73), Expect = 3.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 616 LHRKSHNETVKRKEE-DKKYECDSCNKKFWSKRALS-------EHMIIHTGIKEHQCHVC 667
L+R H E V+ E+ ++ CD C+++ AL MI G E C C
Sbjct: 211 LYRLFHEEEVRILEKQPVRFRCD-CSRER-VAAALLTLGKEELADMIEEDGGIEVTCEFC 268
Query: 668 NTAFYHI 674
YH
Sbjct: 269 GEK-YHF 274
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 32.3 bits (73), Expect = 3.4
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 251 NNKASFTC--DTCDKPFDTIEKCRRHAIRMHMNPCKMFKCDICVAS---FLTPHKLKTHI 305
+ SF C C + ++++ ++H H C C+ + F +L
Sbjct: 147 EDLLSFKCPKSKCHRRCGSLKELKKHYKAQH----GFVLCSECIGNKKDFWNEIRLFRSS 202
Query: 306 K-TKHRTQLKELYTFE----CQHCEDKFSTPFELNKHNESKHEK 344
H+ E F+ C C+ F EL +H +HE
Sbjct: 203 TLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEA 246
Score = 31.9 bits (72), Expect = 4.0
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 1450 KCP--VCHKTYSTPRQMRIHLREAHSQKKYACDVCG---KQFT------STNRVSQHKAH 1498
KCP CH+ + ++++ H + H C C K F ++ + HK
Sbjct: 153 KCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNG 210
Query: 1499 SHFGIIKTIQRKFECDFCKKKFYRNFDLQEHINTHTGNKPYQCQICNKSFGTRRNY 1554
+ + C FCK FY + +L+ H + C IC+ R Y
Sbjct: 211 GLEE--EGFKGHPLCIFCKIYFYDDDELRRHCR----LRHEACHICDMVGPIRYQY 260
Score = 31.5 bits (71), Expect = 5.1
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 901 KFEC--DYCKMKFKSKSFLSEHINTHTGNKPYQCQIC---KKSFANKRSY--QRDLKRHK 953
F+C C + S L +H G C C KK F N+ L+ HK
Sbjct: 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHK 208
Query: 954 QLAGQLKPEDIH-ECKICHKTFLEKGSLAKHMNWVHGDKCHIC 995
+ + H C C F + L +H H + CHIC
Sbjct: 209 NGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH-EACHIC 250
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 29.4 bits (66), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 691 MYKCPVCSKMFTELYEMKRHRDHKHG-GKCHVCK 723
M+KCP+C L+ +K+H H KC VC
Sbjct: 1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCN 34
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase activity
and may play a role in the transcription of the virus
genome, the unwinding or reannealing of double-stranded
RNA during RNA synthesis. The RTPase activity constitutes
the first step in the capping of RNA, resulting in a
5'-diphosphorylated RNA plus-strand. lambda1 is an
Orthoreovirus core protein, VP3 is the homologous core
protein in Aquareoviruses.
Length = 1166
Score = 32.4 bits (74), Expect = 3.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1451 CPVCHKTYSTPRQMRIHLREAHS 1473
C VC +S+ Q+ H R HS
Sbjct: 76 CNVCMAEFSSMDQLAEHQRTTHS 98
Score = 32.1 bits (73), Expect = 4.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 1326 YLCDICGKQFTSTNRVNIHKACVHS 1350
Y+C++C +F+S +++ H+ HS
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRTTHS 98
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 600 MCDICGKQFTTLSYLDLHRKSH 621
C CGK F+ S L H ++H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 6.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1540 QCQICNKSFGTRRNYRLHLKRH 1561
+C C KSF + N + HL+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 2003 KCDVCGSSFKDKKHFSVHIRNH 2024
KC CG SF K + H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains a
number of divergent C2H2 type zinc fingers.
Length = 24
Score = 27.6 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1046 YKCDVCGSSFKDKWYLGVHMRKH 1068
+KC +CG SF K L H+RKH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.8 bits (59), Expect = 7.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1539 YQCQICNKSFGTRRNYRLHLKRHK 1562
++C +C KSF ++ + HL++H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 26.8 bits (59), Expect = 8.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 1299 CPVCHKTYSTPKTMRRHLRQVH 1320
CP+C K++S+ ++RHLR+ H
Sbjct: 3 CPLCGKSFSSKDALKRHLRKHH 24
Score = 26.4 bits (58), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 2002 YKCDVCGSSFKDKKHFSVHIRNH 2024
+KC +CG SF K H+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|182608 PRK10639, PRK10639, formate dehydrogenase-O subunit gamma;
Provisional.
Length = 211
Score = 30.5 bits (69), Expect = 6.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1691 EWNKNKHEVIESQEPMDTGDYSLEQ 1715
W KN +++ ++E DTG Y+ Q
Sbjct: 87 FWAKNIRKIVVNEEVGDTGRYNFGQ 111
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 31.1 bits (71), Expect = 6.5
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 18/72 (25%)
Query: 1046 YKCDVCGSSFKDK-----WYLGVHMRKHNGEKPYNCDYCGQTFAARSTFTFHLKKHEENG 1100
++C +CG S KDK W + K +NC Y F LK +E +
Sbjct: 28 FRCPICGDSQKDKNKARGWIYEK--KDGGVFKCHNCGY-------HRPFGNFLKDYEPD- 77
Query: 1101 SVDFDE-IVESR 1111
+ E I+E
Sbjct: 78 --LYREYIMERF 87
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 30.8 bits (70), Expect = 8.8
Identities = 15/63 (23%), Positives = 17/63 (26%), Gaps = 22/63 (34%)
Query: 1952 CKVCGAKIKGNMKRHMLSHTGEKPFCCDICGKSLKGNLKAHILRC-----QGERPYKCDV 2006
C+ CG C C L + LRC Q P C
Sbjct: 438 CRDCG-----------------YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPE 480
Query: 2007 CGS 2009
CGS
Sbjct: 481 CGS 483
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
Length = 936
Score = 31.0 bits (70), Expect = 9.1
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 166 CPICQKIFKNKEWYLDHLSLHEEQLISLNRRKPIHVRSV--RLPSV--RGQDIFTTTTKF 221
CP+C I N E L S+ EE L LN V + R P + + +
Sbjct: 660 CPLCSHIESNTESLLLMPSMTEELLQKLNAVHIYTVSELASREPEALAKSLGLSKKEAEK 719
Query: 222 MRRKAGNVLHVARWFTDCQ 240
+ R+AG+VL + R ++ +
Sbjct: 720 LIREAGDVLELLRRRSELR 738
>gnl|CDD|233344 TIGR01290, nifB, nitrogenase cofactor biosynthesis protein NifB.
This model describes NifB, a protein required for the
biosynthesis of the iron-molybdenum (or iron-vanadium)
cofactor used by the nitrogen-fixing enzyme nitrogenase.
NifB belongs to the radical SAM family, and the FeMo
cluster biosynthesis process requires
S-adenosylmethionine. Archaeal homologs lack the most
C-terminal region and score between the trusted and noise
cutoffs of this model [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other, Central
intermediary metabolism, Nitrogen fixation].
Length = 442
Score = 30.6 bits (69), Expect = 9.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 1839 SLQCHKQFVHLGVHKPKFLNMECDYCSRKFPSKNEVTNHIKSHM 1882
S++ H F + + N++C+YC+RK+ NE + S +
Sbjct: 16 SVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSEL 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.422
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 97,016,048
Number of extensions: 9096271
Number of successful extensions: 10265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10175
Number of HSP's successfully gapped: 268
Length of query: 2028
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 1916
Effective length of database: 5,969,954
Effective search space: 11438431864
Effective search space used: 11438431864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (29.7 bits)