Query psy4687
Match_columns 339
No_of_seqs 172 out of 235
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:20:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ax1_A Serrate RNA effector mo 100.0 3.4E-38 1.2E-42 307.6 7.6 196 118-338 133-339 (358)
2 4fxv_A ELAV-like protein 1; RN 98.4 1.1E-06 3.7E-11 69.9 8.3 76 31-107 16-92 (99)
3 1x4a_A Splicing factor, argini 98.3 4.3E-06 1.5E-10 66.5 10.2 80 26-108 14-93 (109)
4 2do4_A Squamous cell carcinoma 98.3 3.7E-06 1.3E-10 65.8 9.7 82 26-108 9-90 (100)
5 3md1_A Nuclear and cytoplasmic 98.3 2.3E-06 7.7E-11 64.4 7.7 73 34-107 1-74 (83)
6 2e5h_A Zinc finger CCHC-type a 98.3 3E-06 1E-10 65.3 8.4 76 31-106 13-88 (94)
7 2d9p_A Polyadenylate-binding p 98.3 4.8E-06 1.6E-10 65.5 9.7 76 31-108 12-87 (103)
8 2cqc_A Arginine/serine-rich sp 98.3 4.1E-06 1.4E-10 64.5 8.9 78 30-107 11-88 (95)
9 2cph_A RNA binding motif prote 98.2 8.9E-06 3E-10 64.1 10.3 81 27-107 8-90 (107)
10 1x5u_A Splicing factor 3B subu 98.2 8.8E-06 3E-10 64.0 10.2 80 29-108 10-89 (105)
11 2ywk_A Putative RNA-binding pr 98.2 5.2E-06 1.8E-10 64.1 8.4 78 27-106 9-87 (95)
12 2cpd_A Apobec-1 stimulating pr 98.2 8.2E-06 2.8E-10 63.8 9.7 75 26-108 7-83 (99)
13 2e44_A Insulin-like growth fac 98.2 6.5E-06 2.2E-10 63.8 8.8 71 32-107 13-85 (96)
14 1p27_B RNA-binding protein 8A; 98.2 8.1E-06 2.8E-10 64.4 9.1 82 26-107 15-96 (106)
15 2cq3_A RNA-binding protein 9; 98.2 1.2E-05 3.9E-10 63.3 9.9 78 27-107 8-86 (103)
16 1whw_A Hypothetical protein ri 98.2 7.3E-06 2.5E-10 63.8 8.6 76 33-108 7-82 (99)
17 2cqi_A Nucleolysin TIAR; RNA r 98.2 1.3E-05 4.5E-10 62.9 10.0 78 27-107 8-86 (103)
18 2cq0_A Eukaryotic translation 98.2 6.6E-06 2.3E-10 64.7 8.1 78 31-108 12-89 (103)
19 3bs9_A Nucleolysin TIA-1 isofo 98.2 5.8E-06 2E-10 62.6 7.6 76 32-107 4-79 (87)
20 2dng_A Eukaryotic translation 98.1 1.2E-05 3.9E-10 63.4 9.4 79 27-107 8-86 (103)
21 3mdf_A Peptidyl-prolyl CIS-tra 98.1 4.3E-06 1.5E-10 63.1 6.6 75 32-106 5-79 (85)
22 2dnm_A SRP46 splicing factor; 98.1 1.3E-05 4.5E-10 62.9 9.6 78 31-108 10-87 (103)
23 1oo0_B CG8781-PA, drosophila Y 98.1 7.9E-06 2.7E-10 65.0 8.4 82 26-107 18-99 (110)
24 2dgo_A Cytotoxic granule-assoc 98.1 1.6E-05 5.3E-10 63.7 10.1 78 30-107 11-88 (115)
25 4a8x_A RNA-binding protein wit 98.1 3E-06 1E-10 64.3 5.5 75 33-107 3-78 (88)
26 2dh8_A DAZ-associated protein 98.1 1.6E-05 5.4E-10 62.7 9.9 79 28-107 10-88 (105)
27 2dnh_A Bruno-like 5, RNA bindi 98.1 1.8E-05 6.2E-10 62.2 10.1 70 32-103 13-83 (105)
28 2dgv_A HnRNP M, heterogeneous 98.1 1.3E-05 4.5E-10 61.4 9.1 75 32-108 6-80 (92)
29 2x1f_A MRNA 3'-END-processing 98.1 8.4E-06 2.9E-10 63.4 7.9 74 34-107 2-75 (96)
30 3beg_B Splicing factor, argini 98.1 4.9E-06 1.7E-10 67.5 6.7 80 19-105 1-80 (115)
31 1x4h_A RNA-binding protein 28; 98.1 1.8E-05 6.1E-10 62.7 9.9 79 28-107 9-94 (111)
32 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.1 1.7E-05 5.7E-10 65.2 9.9 80 27-106 56-135 (140)
33 2dnz_A Probable RNA-binding pr 98.1 1.5E-05 5.1E-10 61.5 9.0 75 33-107 4-78 (95)
34 2dnq_A RNA-binding protein 4B; 98.1 1.3E-05 4.4E-10 61.6 8.4 68 33-108 7-74 (90)
35 2khc_A Testis-specific RNP-typ 98.1 1.8E-05 6.3E-10 63.6 9.7 78 29-106 35-112 (118)
36 2cpe_A RNA-binding protein EWS 98.1 1.5E-05 5.3E-10 63.6 9.1 80 28-108 9-97 (113)
37 1wi8_A EIF-4B, eukaryotic tran 98.1 1.5E-05 5E-10 62.9 8.7 79 27-107 8-87 (104)
38 2cpj_A Non-POU domain-containi 98.1 1.4E-05 4.7E-10 62.5 8.5 74 28-107 9-82 (99)
39 2xnq_A Nuclear polyadenylated 98.1 1.1E-05 3.7E-10 63.5 7.7 70 30-107 18-88 (97)
40 1x5s_A Cold-inducible RNA-bind 98.1 1.3E-05 4.3E-10 62.8 8.0 76 32-107 10-85 (102)
41 2dgu_A Heterogeneous nuclear r 98.0 1.6E-05 5.6E-10 62.6 8.5 70 30-107 7-76 (103)
42 2do0_A HnRNP M, heterogeneous 98.0 2.7E-05 9.1E-10 62.1 9.8 74 32-107 13-87 (114)
43 2dgp_A Bruno-like 4, RNA bindi 98.0 2.8E-05 9.7E-10 61.2 9.8 72 30-101 9-80 (106)
44 2dgt_A RNA-binding protein 30; 98.0 1.7E-05 5.9E-10 61.1 8.3 69 32-108 8-76 (92)
45 2cpf_A RNA binding motif prote 98.0 8.4E-06 2.9E-10 63.4 6.6 76 33-108 4-82 (98)
46 2cpz_A CUG triplet repeat RNA- 98.0 1.8E-05 6.3E-10 63.4 8.8 79 30-108 21-99 (115)
47 2la6_A RNA-binding protein FUS 98.0 2.3E-05 7.9E-10 61.2 9.2 79 27-106 6-93 (99)
48 1x4c_A Splicing factor, argini 98.0 1.9E-05 6.3E-10 63.0 8.6 65 32-103 13-77 (108)
49 2fc8_A NCL protein; structure 98.0 1.8E-05 6.1E-10 61.9 8.3 74 31-108 12-86 (102)
50 3ex7_B RNA-binding protein 8A; 98.0 1.8E-05 6.1E-10 64.4 8.6 80 27-107 15-95 (126)
51 1x5o_A RNA binding motif, sing 98.0 3.8E-05 1.3E-09 61.4 10.3 77 28-106 19-96 (114)
52 3ucg_A Polyadenylate-binding p 98.0 1.9E-05 6.5E-10 60.0 8.2 72 34-107 6-78 (89)
53 2e5g_A U6 snRNA-specific termi 98.0 2.2E-05 7.6E-10 60.8 8.7 70 32-107 6-75 (94)
54 2cqd_A RNA-binding region cont 98.0 4E-05 1.4E-09 61.5 10.4 81 26-107 9-89 (116)
55 1why_A Hypothetical protein ri 98.0 3.5E-05 1.2E-09 59.9 9.7 70 32-107 15-86 (97)
56 3ulh_A THO complex subunit 4; 98.0 1.7E-05 5.9E-10 62.5 8.1 77 28-106 23-100 (107)
57 2kxn_B Transformer-2 protein h 98.0 2.3E-05 8E-10 65.1 9.1 78 29-107 41-119 (129)
58 2jvo_A Nucleolar protein 3; nu 98.0 8.9E-06 3E-10 65.5 6.3 73 29-109 26-98 (108)
59 2jrs_A RNA-binding protein 39; 98.0 2.7E-05 9.1E-10 62.5 9.0 81 27-107 19-99 (108)
60 2dhg_A TRNA selenocysteine ass 98.0 4.9E-05 1.7E-09 59.6 10.3 74 32-107 7-83 (104)
61 2dnp_A RNA-binding protein 14; 98.0 2.5E-05 8.5E-10 59.9 8.3 69 32-108 7-75 (90)
62 1x5t_A Splicing factor 3B subu 98.0 1.2E-05 4.2E-10 62.0 6.6 75 33-107 4-79 (96)
63 1h2v_Z 20 kDa nuclear CAP bind 98.0 2.2E-05 7.6E-10 66.4 8.7 81 27-108 32-113 (156)
64 1whx_A Hypothetical protein ri 98.0 1.7E-05 6E-10 63.9 7.5 68 34-107 10-77 (111)
65 2fy1_A RNA-binding motif prote 98.0 2.7E-05 9.3E-10 63.2 8.7 74 33-107 6-79 (116)
66 2dgx_A KIAA0430 protein; RRM d 98.0 2.5E-05 8.5E-10 61.0 8.1 73 31-107 6-83 (96)
67 2kt5_A RNA and export factor-b 98.0 2.2E-05 7.6E-10 63.9 7.9 77 30-107 31-107 (124)
68 2e5j_A Methenyltetrahydrofolat 97.9 3.4E-05 1.2E-09 60.1 8.5 71 31-107 16-87 (97)
69 2cqb_A Peptidyl-prolyl CIS-tra 97.9 1.5E-05 5.3E-10 62.3 6.5 77 32-108 10-86 (102)
70 2la4_A Nuclear and cytoplasmic 97.9 3E-05 1E-09 60.7 8.1 69 33-107 26-94 (101)
71 4f25_A Polyadenylate-binding p 97.9 1E-05 3.5E-10 65.5 5.6 71 34-107 5-76 (115)
72 2dgs_A DAZ-associated protein 97.9 5.9E-05 2E-09 58.7 9.7 75 32-107 8-82 (99)
73 1x4e_A RNA binding motif, sing 97.9 1.5E-05 5.1E-10 60.4 5.9 73 33-105 4-76 (85)
74 1p1t_A Cleavage stimulation fa 97.9 1E-05 3.6E-10 63.4 5.2 76 32-107 6-81 (104)
75 1wf1_A RNA-binding protein RAL 97.9 4.8E-05 1.6E-09 60.6 9.2 73 28-108 21-94 (110)
76 3lqv_A PRE-mRNA branch site pr 97.9 4.2E-05 1.5E-09 61.1 8.8 72 33-107 7-78 (115)
77 2j76_E EIF-4B, EIF4B, eukaryot 97.9 1.5E-05 5.1E-10 62.8 5.8 79 27-107 12-91 (100)
78 2ki2_A SS-DNA binding protein 97.9 2.8E-05 9.7E-10 59.4 7.2 72 35-107 2-73 (90)
79 2cqg_A TDP-43, TAR DNA-binding 97.9 8.2E-05 2.8E-09 58.3 9.9 68 27-94 8-75 (103)
80 1rk8_A CG8781-PA, CG8781-PA pr 97.9 3.4E-05 1.2E-09 66.1 8.2 80 27-107 65-145 (165)
81 1wex_A Hypothetical protein (r 97.9 5.7E-05 2E-09 60.8 8.9 74 28-107 9-84 (104)
82 1x4d_A Matrin 3; structural ge 97.9 3.2E-05 1.1E-09 62.5 7.3 68 33-106 14-84 (102)
83 2div_A TRNA selenocysteine ass 97.9 4E-05 1.4E-09 59.6 7.6 72 33-105 8-81 (99)
84 2err_A Ataxin-2-binding protei 97.9 3.9E-05 1.4E-09 61.4 7.7 74 31-107 26-100 (109)
85 2hvz_A Splicing factor, argini 97.8 3.6E-05 1.2E-09 60.2 7.0 69 35-108 1-69 (101)
86 1nu4_A U1A RNA binding domain; 97.8 1.5E-05 5.2E-10 61.7 4.7 73 32-107 6-82 (97)
87 2cqp_A RNA-binding protein 12; 97.8 2.2E-05 7.6E-10 60.9 5.7 75 32-107 13-88 (98)
88 1u6f_A Tcubp1, RNA-binding pro 97.8 4.1E-05 1.4E-09 63.3 7.6 77 32-109 40-117 (139)
89 2lea_A Serine/arginine-rich sp 97.8 3.5E-05 1.2E-09 64.5 7.1 80 28-107 41-120 (135)
90 3s8s_A Histone-lysine N-methyl 97.8 2.6E-05 8.7E-10 63.2 6.0 73 34-107 6-79 (110)
91 1uaw_A Mouse-musashi-1; RNP-ty 97.8 3E-05 1E-09 57.3 6.0 71 35-106 1-71 (77)
92 2nlw_A Eukaryotic translation 97.8 8.1E-05 2.8E-09 59.1 8.8 74 32-107 13-93 (105)
93 3p5t_L Cleavage and polyadenyl 97.8 3.2E-05 1.1E-09 59.5 6.2 72 35-107 2-76 (90)
94 2ek1_A RNA-binding protein 12; 97.8 1.6E-05 5.5E-10 61.3 4.1 73 33-106 14-87 (95)
95 2kvi_A Nuclear polyadenylated 97.8 4.2E-05 1.4E-09 59.6 6.5 68 32-107 8-76 (96)
96 2mss_A Protein (musashi1); RNA 97.8 4.8E-05 1.7E-09 56.1 6.3 69 36-105 1-69 (75)
97 2cpx_A Hypothetical protein FL 97.8 8.3E-05 2.9E-09 59.3 8.1 73 31-107 22-98 (115)
98 1x4g_A Nucleolysin TIAR; struc 97.8 7.3E-05 2.5E-09 59.4 7.7 70 32-107 23-92 (109)
99 2a3j_A U1 small nuclear ribonu 97.8 9.8E-05 3.3E-09 61.7 8.8 72 33-107 28-103 (127)
100 2ytc_A PRE-mRNA-splicing facto 97.7 6.9E-05 2.4E-09 56.5 7.1 69 32-106 10-79 (85)
101 3s7r_A Heterogeneous nuclear r 97.7 0.00011 3.7E-09 55.7 8.1 70 32-103 9-79 (87)
102 2krb_A Eukaryotic translation 97.7 6.3E-05 2.1E-09 56.6 6.6 68 35-104 2-75 (81)
103 2hzc_A Splicing factor U2AF 65 97.7 6.3E-05 2.2E-09 56.8 6.7 68 32-106 4-82 (87)
104 3r27_A HnRNP L, heterogeneous 97.7 7.3E-05 2.5E-09 60.5 7.2 67 33-105 20-88 (100)
105 2yh0_A Splicing factor U2AF 65 97.7 0.00022 7.5E-09 61.0 10.7 76 32-107 112-187 (198)
106 2cq4_A RNA binding motif prote 97.7 5.5E-05 1.9E-09 60.5 6.5 72 34-107 25-97 (114)
107 2kn4_A Immunoglobulin G-bindin 97.7 0.00015 5.1E-09 61.0 9.4 76 32-107 68-143 (158)
108 2jwn_A Embryonic polyadenylate 97.7 7.2E-05 2.5E-09 60.6 7.1 73 34-107 36-108 (124)
109 1fxl_A Paraneoplastic encephal 97.7 0.00011 3.6E-09 60.9 8.2 74 34-107 2-75 (167)
110 2i2y_A Fusion protein consists 97.7 0.00016 5.5E-09 60.6 9.3 75 28-107 67-141 (150)
111 2dis_A Unnamed protein product 97.7 0.00011 3.8E-09 58.0 7.7 74 33-106 7-84 (109)
112 2lxi_A RNA-binding protein 10; 97.7 4.1E-05 1.4E-09 59.6 5.0 72 34-106 1-75 (91)
113 2cqh_A IGF-II mRNA-binding pro 97.7 3.7E-05 1.3E-09 59.2 4.7 69 33-108 7-77 (93)
114 1x4f_A Matrin 3; structural ge 97.7 5.8E-05 2E-09 62.1 6.1 71 31-107 22-95 (112)
115 2fc9_A NCL protein; structure 97.7 0.00014 4.9E-09 56.7 8.1 73 32-108 13-85 (101)
116 1fxl_A Paraneoplastic encephal 97.7 0.00016 5.4E-09 59.8 8.6 74 32-105 86-159 (167)
117 1x5p_A Negative elongation fac 97.7 0.00019 6.4E-09 55.8 8.5 73 27-107 8-80 (97)
118 1fjc_A Nucleolin RBD2, protein 97.6 4E-05 1.4E-09 59.2 4.5 71 32-107 14-84 (96)
119 2dgw_A Probable RNA-binding pr 97.6 9.5E-05 3.2E-09 56.6 6.5 71 33-106 9-79 (91)
120 3md3_A Nuclear and cytoplasmic 97.6 0.0002 6.8E-09 59.1 8.7 75 31-106 84-159 (166)
121 2cq1_A PTB-like protein L; RRM 97.6 0.00024 8.2E-09 56.9 8.5 71 30-106 11-83 (101)
122 1b7f_A Protein (SXL-lethal pro 97.6 0.0002 6.7E-09 59.6 8.3 72 32-103 87-158 (168)
123 2qfj_A FBP-interacting repress 97.6 0.00023 7.8E-09 61.8 8.9 76 32-107 123-198 (216)
124 2f3j_A RNA and export factor b 97.6 0.00019 6.4E-09 62.9 8.4 74 33-107 87-160 (177)
125 2cpi_A CCR4-NOT transcription 97.6 0.00018 6.2E-09 57.6 7.5 77 31-107 12-94 (111)
126 3n9u_C Cleavage and polyadenyl 97.6 0.00017 5.7E-09 62.0 7.7 73 34-107 55-130 (156)
127 2g4b_A Splicing factor U2AF 65 97.6 0.00024 8.1E-09 59.4 8.4 74 33-106 93-166 (172)
128 1sjq_A Polypyrimidine tract-bi 97.6 0.00025 8.4E-09 57.8 8.1 69 33-107 15-85 (105)
129 1s79_A Lupus LA protein; RRM, 97.5 0.00021 7.2E-09 57.1 7.5 72 33-107 10-82 (103)
130 1iqt_A AUF1, heterogeneous nuc 97.5 0.00016 5.4E-09 53.2 6.1 68 36-105 1-69 (75)
131 2e5i_A Heterogeneous nuclear r 97.5 0.00032 1.1E-08 58.6 8.7 68 31-103 22-89 (124)
132 1fj7_A Nucleolin RBD1, protein 97.5 5E-05 1.7E-09 59.3 3.4 73 33-107 16-88 (101)
133 2m2b_A RNA-binding protein 10; 97.5 0.00023 7.7E-09 58.7 7.6 77 29-107 18-101 (131)
134 2lkz_A RNA-binding protein 5; 97.5 0.00013 4.6E-09 57.7 5.9 66 33-99 8-76 (95)
135 2rs2_A Musashi-1, RNA-binding 97.5 0.00017 5.9E-09 57.7 6.6 73 33-107 24-97 (109)
136 2xs2_A Deleted in azoospermia- 97.5 0.00025 8.5E-09 55.4 7.3 70 33-106 8-78 (102)
137 1b7f_A Protein (SXL-lethal pro 97.5 0.00017 5.7E-09 60.0 6.6 75 33-107 2-76 (168)
138 1x4b_A Heterogeneous nuclear r 97.5 0.00019 6.6E-09 57.4 6.7 76 31-107 24-99 (116)
139 1wg5_A Heterogeneous nuclear r 97.5 0.00047 1.6E-08 54.5 8.4 70 32-103 13-83 (104)
140 1wg1_A KIAA1579 protein, homol 97.5 8.2E-05 2.8E-09 57.0 3.8 67 34-107 5-71 (88)
141 3md3_A Nuclear and cytoplasmic 97.4 0.00036 1.2E-08 57.6 7.9 70 36-107 2-72 (166)
142 3ns6_A Eukaryotic translation 97.4 9.7E-05 3.3E-09 58.2 4.1 73 34-107 6-86 (100)
143 3q2s_C Cleavage and polyadenyl 97.4 0.00037 1.3E-08 63.4 8.2 74 33-107 67-143 (229)
144 4f02_A Polyadenylate-binding p 97.4 0.00037 1.3E-08 61.6 8.0 73 32-105 13-86 (213)
145 2qfj_A FBP-interacting repress 97.4 0.00046 1.6E-08 59.8 8.4 77 30-107 24-101 (216)
146 3nmr_A Cugbp ELAV-like family 97.4 0.00053 1.8E-08 57.2 8.3 71 32-103 93-163 (175)
147 3zzy_A Polypyrimidine tract-bi 97.4 0.00025 8.5E-09 60.0 6.2 77 27-107 21-99 (130)
148 3tyt_A Heterogeneous nuclear r 97.4 0.00055 1.9E-08 61.0 8.8 69 33-103 122-192 (205)
149 2jvr_A Nucleolar protein 3; RN 97.4 0.00029 1E-08 57.5 6.3 71 33-107 27-98 (111)
150 2ad9_A Polypyrimidine tract-bi 97.3 0.00045 1.5E-08 57.4 7.3 70 32-107 29-100 (119)
151 3egn_A RNA-binding protein 40; 97.3 0.00032 1.1E-08 58.3 6.3 75 33-108 44-124 (143)
152 1qm9_A Polypyrimidine tract-bi 97.3 0.00056 1.9E-08 59.0 7.9 69 34-107 3-72 (198)
153 2cq2_A Hypothetical protein LO 97.3 0.00044 1.5E-08 57.1 6.8 64 32-101 23-88 (114)
154 2wbr_A GW182, gawky, LD47780P; 97.3 0.00038 1.3E-08 55.5 6.2 69 33-107 6-74 (89)
155 2db1_A Heterogeneous nuclear r 97.3 0.00047 1.6E-08 56.0 6.7 71 32-105 15-89 (118)
156 3nmr_A Cugbp ELAV-like family 97.3 0.00061 2.1E-08 56.8 7.4 71 34-104 3-75 (175)
157 1fje_B Nucleolin RBD12, protei 97.3 0.00034 1.2E-08 58.9 5.8 72 31-107 96-167 (175)
158 2adc_A Polypyrimidine tract-bi 97.2 0.00095 3.2E-08 59.6 8.8 72 31-107 31-103 (229)
159 2lcw_A RNA-binding protein FUS 96.3 4.5E-05 1.6E-09 61.3 0.0 75 32-107 5-88 (116)
160 2dnn_A RNA-binding protein 12; 97.2 0.00065 2.2E-08 55.1 6.7 69 33-105 15-84 (109)
161 1wel_A RNA-binding protein 12; 97.2 0.00075 2.6E-08 54.9 6.8 73 32-106 23-96 (124)
162 2dit_A HIV TAT specific factor 97.2 0.0015 5E-08 52.4 8.4 72 32-107 13-95 (112)
163 2cjk_A Nuclear polyadenylated 97.2 0.00093 3.2E-08 55.5 7.4 73 33-106 86-158 (167)
164 3pgw_S U1-70K; protein-RNA com 97.1 0.00073 2.5E-08 67.3 7.4 75 34-109 102-177 (437)
165 3tyt_A Heterogeneous nuclear r 97.1 0.0012 4E-08 58.8 8.0 70 33-107 3-73 (205)
166 3pgw_A U1-A; protein-RNA compl 97.1 0.00092 3.1E-08 60.9 7.2 69 33-106 206-275 (282)
167 3sde_A Paraspeckle component 1 97.1 0.0011 3.8E-08 60.4 7.8 72 30-107 18-89 (261)
168 2hgm_A HNRPF protein, heteroge 97.1 0.0019 6.5E-08 53.9 8.6 69 31-103 39-110 (126)
169 2ghp_A U4/U6 snRNA-associated 97.1 0.0013 4.4E-08 60.2 8.1 74 30-107 37-111 (292)
170 3smz_A Protein raver-1, ribonu 97.1 0.002 6.7E-08 58.8 9.1 75 32-107 93-168 (284)
171 1l3k_A Heterogeneous nuclear r 97.1 0.0015 5.2E-08 55.6 7.9 74 31-106 10-84 (196)
172 1l3k_A Heterogeneous nuclear r 97.1 0.0014 4.7E-08 55.9 7.6 79 28-107 98-176 (196)
173 1owx_A Lupus LA protein, SS-B, 97.1 0.0014 4.9E-08 54.8 7.4 64 28-97 12-77 (121)
174 1qm9_A Polypyrimidine tract-bi 97.0 0.0026 8.8E-08 54.7 9.2 71 32-107 118-190 (198)
175 1wez_A HnRNP H', FTP-3, hetero 97.0 0.002 7E-08 51.0 7.9 70 32-105 13-83 (102)
176 2lmi_A GRSF-1, G-rich sequence 97.0 0.0013 4.4E-08 52.2 6.5 71 32-105 9-83 (107)
177 2cpy_A RNA-binding protein 12; 97.0 0.0015 5E-08 52.4 6.8 71 33-106 14-86 (114)
178 3smz_A Protein raver-1, ribonu 97.0 0.0012 4E-08 60.3 6.8 75 32-107 182-257 (284)
179 4f02_A Polyadenylate-binding p 97.0 0.001 3.5E-08 58.8 6.1 72 33-107 102-174 (213)
180 2bz2_A Negative elongation fac 97.0 0.0016 5.6E-08 53.3 6.9 70 30-107 35-104 (121)
181 2cjk_A Nuclear polyadenylated 96.9 0.0016 5.6E-08 54.0 6.6 61 34-95 3-64 (167)
182 2ghp_A U4/U6 snRNA-associated 96.9 0.0015 5.1E-08 59.8 7.0 74 33-107 116-190 (292)
183 2dnl_A Cytoplasmic polyadenyla 96.8 0.0011 3.9E-08 53.1 4.9 64 33-97 7-73 (114)
184 1wf0_A TDP-43, TAR DNA-binding 96.8 0.0013 4.5E-08 49.9 5.0 53 33-90 4-56 (88)
185 1sjr_A Polypyrimidine tract-bi 96.8 0.0031 1E-07 55.4 7.7 71 32-107 44-117 (164)
186 2hgl_A HNRPF protein, heteroge 96.8 0.0016 5.3E-08 55.0 5.5 71 32-105 42-116 (136)
187 2adc_A Polypyrimidine tract-bi 96.8 0.0042 1.4E-07 55.4 8.4 70 33-107 150-221 (229)
188 2g4b_A Splicing factor U2AF 65 96.7 0.0025 8.5E-08 53.1 6.4 68 33-107 3-81 (172)
189 3pgw_A U1-A; protein-RNA compl 96.7 0.0034 1.2E-07 57.1 7.8 72 33-107 8-83 (282)
190 3d2w_A TAR DNA-binding protein 96.6 0.0034 1.2E-07 48.4 6.0 59 27-90 4-62 (89)
191 2voo_A Lupus LA protein; RNA-b 96.6 0.0041 1.4E-07 54.9 7.3 71 34-106 109-179 (193)
192 2yh0_A Splicing factor U2AF 65 96.5 0.0057 1.9E-07 52.1 7.4 67 34-107 4-81 (198)
193 2hgn_A Heterogeneous nuclear r 96.5 0.0029 9.9E-08 53.6 5.1 71 32-106 44-115 (139)
194 3sde_A Paraspeckle component 1 96.4 0.0053 1.8E-07 55.9 6.7 70 30-100 92-161 (261)
195 1fje_B Nucleolin RBD12, protei 96.2 0.0014 4.7E-08 55.1 1.4 74 32-107 11-84 (175)
196 2dha_A FLJ20171 protein; RRM d 96.1 0.0062 2.1E-07 50.4 5.0 69 32-103 21-94 (123)
197 2j8a_A Histone-lysine N-methyl 95.7 0.033 1.1E-06 47.5 7.9 78 35-113 3-95 (136)
198 3u1l_A PRE-mRNA-splicing facto 95.5 0.018 6E-07 53.3 5.9 65 31-101 131-204 (240)
199 2pe8_A Splicing factor 45; RRM 95.3 0.068 2.3E-06 42.6 8.1 74 33-106 7-86 (105)
200 1uw4_A UPF3X; nonsense mediate 95.2 0.086 3E-06 41.9 8.3 69 35-103 2-72 (91)
201 2diu_A KIAA0430 protein; struc 94.6 0.13 4.6E-06 41.3 8.0 62 33-104 8-74 (96)
202 1paa_A Yeast transcription fac 94.5 0.018 6E-07 33.7 2.0 26 305-330 2-27 (30)
203 2d9h_A Zinc finger protein 692 94.5 0.034 1.2E-06 40.4 3.9 44 289-332 22-65 (78)
204 1znf_A 31ST zinc finger from X 94.5 0.021 7.2E-07 32.6 2.2 23 306-328 2-24 (27)
205 3tht_A Alkylated DNA repair pr 94.4 0.072 2.5E-06 51.7 7.1 65 32-102 16-82 (345)
206 1klr_A Zinc finger Y-chromosom 94.4 0.015 5.1E-07 33.7 1.5 27 305-331 2-28 (30)
207 2elx_A Zinc finger protein 406 93.8 0.028 9.7E-07 34.1 2.0 29 303-331 5-33 (35)
208 1p7a_A BF3, BKLF, kruppel-like 93.7 0.036 1.2E-06 34.2 2.3 27 302-328 8-34 (37)
209 2m0d_A Zinc finger and BTB dom 93.6 0.027 9.4E-07 32.5 1.6 27 304-330 2-28 (30)
210 1rik_A E6APC1 peptide; E6-bind 93.6 0.025 8.5E-07 32.7 1.4 25 305-329 2-26 (29)
211 2adr_A ADR1; transcription reg 93.5 0.014 4.9E-07 40.2 0.2 31 302-332 27-57 (60)
212 1ard_A Yeast transcription fac 93.5 0.027 9.1E-07 32.5 1.4 25 305-329 2-26 (29)
213 2kvh_A Zinc finger and BTB dom 93.4 0.043 1.5E-06 31.5 2.1 24 304-327 2-25 (27)
214 2m0e_A Zinc finger and BTB dom 93.1 0.025 8.7E-07 32.4 0.8 26 305-330 2-27 (29)
215 1bbo_A Human enhancer-binding 93.0 0.036 1.2E-06 37.6 1.7 30 302-331 26-55 (57)
216 3mjh_B Early endosome antigen 93.0 0.035 1.2E-06 36.6 1.5 26 306-331 6-31 (34)
217 2lvt_A Zinc finger and BTB dom 92.1 0.018 6.1E-07 33.6 0.0 26 305-330 2-27 (29)
218 2elo_A Zinc finger protein 406 93.0 0.03 1E-06 34.6 1.1 29 303-331 7-35 (37)
219 2kvg_A Zinc finger and BTB dom 92.9 0.04 1.4E-06 31.9 1.5 23 305-327 3-25 (27)
220 2elm_A Zinc finger protein 406 92.9 0.027 9.2E-07 35.3 0.8 28 303-330 7-34 (37)
221 3v4m_A Splicing factor U2AF 65 92.9 0.29 1E-05 38.8 7.0 74 33-106 4-89 (105)
222 2drp_A Protein (tramtrack DNA- 92.8 0.046 1.6E-06 38.3 2.0 29 302-330 37-65 (66)
223 2lv2_A Insulinoma-associated p 92.7 0.05 1.7E-06 42.0 2.3 41 288-331 42-82 (85)
224 2lvr_A Zinc finger and BTB dom 91.9 0.02 7E-07 33.3 0.0 27 305-331 3-29 (30)
225 3iuf_A Zinc finger protein UBI 92.7 0.06 2E-06 36.1 2.4 29 303-331 5-33 (48)
226 2m0f_A Zinc finger and BTB dom 92.6 0.037 1.3E-06 31.7 1.1 24 305-328 2-25 (29)
227 2els_A Zinc finger protein 406 92.6 0.045 1.5E-06 33.7 1.5 28 302-329 6-33 (36)
228 1srk_A Zinc finger protein ZFP 92.6 0.056 1.9E-06 32.9 1.9 27 303-329 5-31 (35)
229 2elr_A Zinc finger protein 406 92.5 0.052 1.8E-06 33.1 1.7 28 302-329 6-33 (36)
230 2elv_A Zinc finger protein 406 92.4 0.064 2.2E-06 32.9 2.0 25 303-327 7-31 (36)
231 2kvf_A Zinc finger and BTB dom 92.3 0.07 2.4E-06 30.6 2.1 23 305-327 3-25 (28)
232 2ept_A Zinc finger protein 32; 92.2 0.063 2.1E-06 34.1 1.9 28 302-329 7-34 (41)
233 2elt_A Zinc finger protein 406 92.1 0.054 1.9E-06 33.1 1.4 26 303-328 7-32 (36)
234 2ct1_A Transcriptional repress 92.0 0.066 2.3E-06 38.8 2.1 28 304-331 44-71 (77)
235 1x5w_A Zinc finger protein 64, 92.0 0.046 1.6E-06 39.0 1.2 41 289-332 24-64 (70)
236 2elq_A Zinc finger protein 406 92.0 0.072 2.5E-06 32.7 1.9 28 302-329 6-33 (36)
237 1rim_A E6APC2 peptide; E6-bind 92.0 0.062 2.1E-06 32.8 1.6 24 305-328 2-25 (33)
238 2yt9_A Zinc finger-containing 91.9 0.14 4.7E-06 38.2 3.7 29 303-331 63-91 (95)
239 2emi_A Zinc finger protein 484 91.9 0.072 2.5E-06 34.6 1.9 29 302-330 9-37 (46)
240 2l08_A Regulator of nonsense t 91.5 0.13 4.3E-06 41.5 3.4 71 32-102 7-79 (97)
241 3uk3_C Zinc finger protein 217 91.3 0.097 3.3E-06 35.4 2.2 29 302-330 29-57 (57)
242 2ytb_A Zinc finger protein 32; 91.3 0.089 3E-06 33.3 1.9 28 302-329 8-35 (42)
243 2en7_A Zinc finger protein 268 91.3 0.083 2.8E-06 33.8 1.7 27 302-328 9-35 (44)
244 2el5_A Zinc finger protein 268 91.3 0.088 3E-06 33.4 1.8 29 302-330 7-35 (42)
245 2ep1_A Zinc finger protein 484 91.3 0.094 3.2E-06 34.0 2.0 29 302-330 9-37 (46)
246 1njq_A Superman protein; zinc- 91.2 0.084 2.9E-06 33.1 1.7 28 303-330 4-31 (39)
247 2emg_A Zinc finger protein 484 91.2 0.091 3.1E-06 34.1 1.9 28 302-329 9-36 (46)
248 2ytf_A Zinc finger protein 268 91.2 0.085 2.9E-06 34.2 1.7 29 302-330 9-37 (46)
249 2lvu_A Zinc finger and BTB dom 90.5 0.039 1.3E-06 31.3 0.0 23 305-327 2-24 (26)
250 2epu_A Zinc finger protein 32; 91.2 0.069 2.4E-06 34.7 1.2 28 302-329 9-36 (45)
251 2yrj_A Zinc finger protein 473 91.1 0.089 3E-06 34.1 1.7 28 302-329 9-36 (46)
252 2eq1_A Zinc finger protein 347 91.1 0.091 3.1E-06 34.1 1.8 28 302-329 9-36 (46)
253 2epx_A Zinc finger protein 28 91.1 0.13 4.4E-06 33.4 2.5 29 302-330 9-37 (47)
254 2eos_A B-cell lymphoma 6 prote 91.1 0.094 3.2E-06 33.4 1.8 29 302-330 8-36 (42)
255 2ytp_A Zinc finger protein 484 91.0 0.089 3E-06 34.3 1.7 28 302-329 9-36 (46)
256 2eoz_A Zinc finger protein 473 91.0 0.066 2.3E-06 34.9 1.0 29 302-330 9-37 (46)
257 2eq2_A Zinc finger protein 347 91.0 0.1 3.4E-06 33.9 1.9 28 302-329 9-36 (46)
258 2enh_A Zinc finger protein 28 91.0 0.11 3.6E-06 33.9 2.0 28 302-329 9-36 (46)
259 2enf_A Zinc finger protein 347 90.9 0.11 3.7E-06 33.7 2.0 28 302-329 9-36 (46)
260 2yth_A Zinc finger protein 224 90.9 0.12 4.1E-06 33.6 2.2 28 302-329 9-36 (46)
261 2ep3_A Zinc finger protein 484 90.9 0.1 3.4E-06 33.9 1.8 28 302-329 9-36 (46)
262 2ct5_A Zinc finger BED domain 90.9 0.14 4.7E-06 39.2 2.8 36 303-338 27-65 (73)
263 2eom_A ZFP-95, zinc finger pro 90.9 0.091 3.1E-06 34.3 1.6 28 302-329 9-36 (46)
264 2emf_A Zinc finger protein 484 90.9 0.1 3.5E-06 34.0 1.8 28 302-329 9-36 (46)
265 2epc_A Zinc finger protein 32; 90.8 0.093 3.2E-06 33.2 1.6 28 302-329 8-35 (42)
266 2epz_A Zinc finger protein 28 90.8 0.11 3.9E-06 33.6 2.0 28 302-329 9-36 (46)
267 2yrm_A B-cell lymphoma 6 prote 90.8 0.11 3.9E-06 33.4 2.0 29 302-330 7-35 (43)
268 2eop_A Zinc finger protein 268 90.8 0.12 4E-06 33.5 2.0 27 302-328 9-35 (46)
269 2eon_A ZFP-95, zinc finger pro 90.7 0.11 3.6E-06 34.0 1.8 27 302-328 9-35 (46)
270 2epv_A Zinc finger protein 268 90.7 0.11 3.9E-06 33.5 1.9 28 302-329 9-36 (44)
271 2eml_A Zinc finger protein 28 90.6 0.11 3.8E-06 33.7 1.9 29 302-330 9-37 (46)
272 2emx_A Zinc finger protein 268 90.6 0.097 3.3E-06 33.7 1.5 27 302-328 7-33 (44)
273 2eq4_A Zinc finger protein 224 90.6 0.11 3.7E-06 33.7 1.8 29 302-330 9-37 (46)
274 2el4_A Zinc finger protein 268 90.6 0.11 3.9E-06 33.6 1.9 28 302-329 9-36 (46)
275 2yts_A Zinc finger protein 484 90.6 0.11 3.9E-06 33.6 1.9 27 302-328 9-35 (46)
276 2ytq_A Zinc finger protein 268 90.6 0.11 3.8E-06 33.8 1.8 28 302-329 9-36 (46)
277 2em7_A Zinc finger protein 224 90.5 0.12 4.2E-06 33.5 2.0 28 302-329 9-36 (46)
278 2em5_A ZFP-95, zinc finger pro 90.5 0.1 3.5E-06 34.0 1.6 26 302-327 9-34 (46)
279 2ytr_A Zinc finger protein 347 90.5 0.11 3.7E-06 33.7 1.7 28 302-329 9-36 (46)
280 2ene_A Zinc finger protein 347 90.5 0.1 3.5E-06 33.9 1.6 27 302-328 9-35 (46)
281 2em3_A Zinc finger protein 28 90.5 0.096 3.3E-06 34.0 1.4 28 302-329 9-36 (46)
282 2elz_A Zinc finger protein 224 90.5 0.13 4.5E-06 33.4 2.1 28 302-329 9-36 (46)
283 2eof_A Zinc finger protein 268 90.5 0.12 4E-06 33.1 1.8 28 302-329 9-36 (44)
284 2eq3_A Zinc finger protein 347 90.4 0.083 2.8E-06 34.2 1.1 28 302-329 9-36 (46)
285 2ytn_A Zinc finger protein 347 90.4 0.13 4.5E-06 33.4 2.1 28 302-329 9-36 (46)
286 2en9_A Zinc finger protein 28 90.4 0.11 3.8E-06 33.8 1.7 27 302-328 9-35 (46)
287 2eow_A Zinc finger protein 347 90.4 0.1 3.5E-06 33.8 1.6 28 302-329 9-36 (46)
288 2djr_A Zinc finger BED domain- 90.4 0.15 5.2E-06 39.3 2.7 34 303-336 26-66 (76)
289 2em0_A Zinc finger protein 224 90.4 0.14 4.7E-06 33.3 2.1 27 302-328 9-35 (46)
290 2emk_A Zinc finger protein 28 90.3 0.11 3.7E-06 33.8 1.6 27 302-328 9-35 (46)
291 2yte_A Zinc finger protein 473 90.3 0.12 4.3E-06 32.6 1.9 26 303-328 8-33 (42)
292 2emj_A Zinc finger protein 28 90.2 0.11 3.8E-06 33.8 1.6 27 302-328 9-35 (46)
293 2em9_A Zinc finger protein 224 90.2 0.13 4.4E-06 33.3 1.9 27 302-328 9-35 (46)
294 2em4_A Zinc finger protein 28 90.2 0.11 3.7E-06 33.9 1.5 28 302-329 9-36 (46)
295 2eoh_A Zinc finger protein 28 90.2 0.12 4E-06 33.7 1.7 27 303-329 10-36 (46)
296 2em6_A Zinc finger protein 224 90.2 0.13 4.5E-06 33.4 1.9 27 302-328 9-35 (46)
297 2ema_A Zinc finger protein 347 90.2 0.12 4E-06 33.6 1.7 28 302-329 9-36 (46)
298 2eov_A Zinc finger protein 484 90.2 0.12 4E-06 33.5 1.7 28 302-329 9-36 (46)
299 2ytj_A Zinc finger protein 484 90.2 0.11 3.9E-06 33.7 1.6 27 302-328 9-35 (46)
300 2eq0_A Zinc finger protein 347 90.2 0.12 4.1E-06 33.5 1.7 28 302-329 9-36 (46)
301 2emm_A ZFP-95, zinc finger pro 90.1 0.11 3.7E-06 33.7 1.4 27 302-328 9-35 (46)
302 2eme_A Zinc finger protein 473 90.1 0.13 4.5E-06 33.2 1.9 28 302-329 9-36 (46)
303 2emb_A Zinc finger protein 473 90.1 0.14 4.7E-06 32.9 1.9 27 302-328 9-35 (44)
304 2ytg_A ZFP-95, zinc finger pro 90.1 0.12 4.2E-06 33.5 1.7 28 302-329 9-36 (46)
305 2el6_A Zinc finger protein 268 90.0 0.14 4.6E-06 33.4 1.9 28 302-329 9-36 (46)
306 2eox_A Zinc finger protein 473 90.0 0.082 2.8E-06 34.0 0.8 28 302-329 9-36 (44)
307 2elp_A Zinc finger protein 406 90.0 0.11 3.6E-06 32.1 1.3 25 303-327 7-32 (37)
308 2eou_A Zinc finger protein 473 90.0 0.13 4.4E-06 33.1 1.7 27 302-328 9-35 (44)
309 2yto_A Zinc finger protein 484 90.0 0.11 3.9E-06 33.7 1.5 26 302-327 9-34 (46)
310 2ep0_A Zinc finger protein 28 90.0 0.13 4.3E-06 33.4 1.7 27 302-328 9-35 (46)
311 3ue2_A Poly(U)-binding-splicin 89.9 0.42 1.4E-05 39.0 5.2 73 33-105 19-100 (118)
312 2eor_A Zinc finger protein 224 89.9 0.1 3.5E-06 33.8 1.2 26 302-327 9-34 (46)
313 2ytt_A Zinc finger protein 473 89.9 0.11 3.6E-06 33.9 1.2 27 302-328 9-35 (46)
314 2emy_A Zinc finger protein 268 89.9 0.13 4.3E-06 33.4 1.6 28 302-329 9-36 (46)
315 2emh_A Zinc finger protein 484 89.8 0.1 3.6E-06 33.8 1.2 26 302-327 9-34 (46)
316 2yu5_A Zinc finger protein 473 89.8 0.12 4.2E-06 33.1 1.5 29 302-330 9-37 (44)
317 2yti_A Zinc finger protein 347 89.8 0.12 4.2E-06 33.5 1.5 27 302-328 9-35 (46)
318 2gqj_A Zinc finger protein KIA 89.8 0.09 3.1E-06 40.4 1.0 42 289-332 40-81 (98)
319 2eoj_A Zinc finger protein 268 89.7 0.11 3.7E-06 33.3 1.2 27 303-329 10-36 (44)
320 2emp_A Zinc finger protein 347 89.7 0.1 3.6E-06 33.8 1.1 26 302-327 9-34 (46)
321 2ytk_A Zinc finger protein 347 89.7 0.12 4.3E-06 33.5 1.5 28 302-329 9-36 (46)
322 2ct1_A Transcriptional repress 89.7 0.13 4.5E-06 37.2 1.8 30 302-331 12-41 (77)
323 2eoo_A ZFP-95, zinc finger pro 89.6 0.13 4.5E-06 33.4 1.6 26 302-327 9-34 (46)
324 2en6_A Zinc finger protein 268 89.5 0.11 3.6E-06 33.8 1.0 28 302-329 9-36 (46)
325 2eoq_A Zinc finger protein 224 89.5 0.14 4.8E-06 33.2 1.6 27 302-328 9-35 (46)
326 2drp_A Protein (tramtrack DNA- 89.5 0.17 5.9E-06 35.2 2.2 28 302-329 7-34 (66)
327 2eoy_A Zinc finger protein 473 89.4 0.16 5.3E-06 33.1 1.8 27 302-328 9-35 (46)
328 1yui_A GAGA-factor; complex (D 89.3 0.16 5.4E-06 34.5 1.8 29 302-330 21-49 (54)
329 3uk3_C Zinc finger protein 217 89.3 0.11 3.8E-06 35.1 1.0 27 303-329 2-28 (57)
330 2em2_A Zinc finger protein 28 89.2 0.14 4.7E-06 33.3 1.4 27 302-328 9-35 (46)
331 2en1_A Zinc finger protein 224 89.2 0.14 4.7E-06 33.2 1.4 28 302-329 9-36 (46)
332 2en8_A Zinc finger protein 224 89.2 0.16 5.4E-06 32.9 1.7 28 302-329 9-36 (46)
333 2ep2_A Zinc finger protein 484 89.2 0.16 5.4E-06 33.0 1.7 28 302-329 9-36 (46)
334 3s6e_A RNA-binding protein 39; 89.1 0.57 2E-05 38.0 5.4 70 33-106 6-85 (114)
335 2ysp_A Zinc finger protein 224 89.1 0.13 4.4E-06 33.4 1.2 28 302-329 9-36 (46)
336 2en3_A ZFP-95, zinc finger pro 89.1 0.14 4.7E-06 33.2 1.3 26 302-327 9-34 (46)
337 2eps_A POZ-, at HOOK-, and zin 89.0 0.21 7E-06 34.0 2.3 29 302-330 9-37 (54)
338 2ely_A Zinc finger protein 224 89.0 0.16 5.5E-06 33.0 1.6 27 302-328 9-35 (46)
339 2ytm_A Zinc finger protein 28 89.0 0.13 4.5E-06 33.5 1.2 26 302-327 9-34 (46)
340 2lce_A B-cell lymphoma 6 prote 89.0 0.14 4.9E-06 36.7 1.5 40 289-331 32-71 (74)
341 2yso_A ZFP-95, zinc finger pro 89.0 0.16 5.3E-06 33.0 1.5 27 302-328 9-35 (46)
342 2kfq_A FP1; protein, de novo p 88.9 0.049 1.7E-06 33.0 -0.9 23 305-327 2-24 (32)
343 2emz_A ZFP-95, zinc finger pro 88.9 0.18 6.2E-06 32.7 1.8 26 302-327 9-34 (46)
344 2dlq_A GLI-kruppel family memb 88.8 0.18 6.2E-06 39.1 2.1 40 289-331 81-120 (124)
345 2epw_A Zinc finger protein 268 88.8 0.17 5.7E-06 32.7 1.6 27 302-328 9-35 (46)
346 2eoe_A Zinc finger protein 347 88.8 0.15 5E-06 33.0 1.3 28 302-329 9-36 (46)
347 2epq_A POZ-, at HOOK-, and zin 88.7 0.12 4.2E-06 33.4 0.9 29 302-330 7-35 (45)
348 1x6e_A Zinc finger protein 24; 88.7 0.15 5.1E-06 36.5 1.4 38 289-329 29-66 (72)
349 1zfd_A SWI5; DNA binding motif 88.6 0.22 7.6E-06 29.4 2.0 24 305-328 3-28 (32)
350 1sp2_A SP1F2; zinc finger, tra 88.6 0.19 6.4E-06 29.6 1.6 25 305-329 2-28 (31)
351 2en2_A B-cell lymphoma 6 prote 88.4 0.14 5E-06 32.4 1.1 26 302-327 8-33 (42)
352 1bbo_A Human enhancer-binding 88.4 0.2 6.8E-06 33.7 1.8 26 305-330 1-26 (57)
353 2em8_A Zinc finger protein 224 88.3 0.15 5.2E-06 33.1 1.1 26 302-327 9-34 (46)
354 2enc_A Zinc finger protein 224 88.1 0.2 6.8E-06 32.4 1.6 27 302-328 9-35 (46)
355 2d9o_A DNAJ (HSP40) homolog, s 88.0 2.1 7E-05 33.8 7.8 60 34-98 10-76 (100)
356 2ab3_A ZNF29; zinc finger prot 87.9 0.23 7.8E-06 28.3 1.6 23 305-327 2-26 (29)
357 2wbt_A B-129; zinc finger; 2.7 87.7 0.21 7.1E-06 39.6 1.8 31 303-333 98-128 (129)
358 2ytd_A Zinc finger protein 473 87.6 0.21 7E-06 32.4 1.4 26 302-327 9-34 (46)
359 2cot_A Zinc finger protein 435 87.5 0.23 7.8E-06 35.9 1.8 29 303-331 44-72 (77)
360 4gzn_C ZFP-57, zinc finger pro 87.4 0.24 8.3E-06 35.6 1.9 38 289-330 19-56 (60)
361 2dmi_A Teashirt homolog 3; zin 87.4 0.28 9.7E-06 37.9 2.4 29 303-331 78-106 (115)
362 2ctd_A Zinc finger protein 512 87.4 0.21 7.1E-06 38.7 1.6 40 288-331 49-88 (96)
363 2lce_A B-cell lymphoma 6 prote 87.3 0.23 7.9E-06 35.6 1.7 29 302-330 14-42 (74)
364 1a1h_A QGSR zinc finger peptid 87.2 0.31 1.1E-05 35.7 2.4 30 302-331 59-88 (90)
365 2csh_A Zinc finger protein 297 87.1 0.36 1.2E-05 37.0 2.8 33 302-334 62-94 (110)
366 2dmd_A Zinc finger protein 64, 87.1 0.27 9.1E-06 36.6 2.0 30 302-331 61-90 (96)
367 2adr_A ADR1; transcription reg 87.0 0.24 8.2E-06 33.8 1.6 25 305-329 2-26 (60)
368 1x6h_A Transcriptional repress 87.0 0.25 8.6E-06 35.9 1.8 28 304-331 46-73 (86)
369 2epr_A POZ-, at HOOK-, and zin 86.9 0.23 8E-06 32.7 1.4 29 302-330 9-37 (48)
370 1f2i_G Fusion of N-terminal 17 86.7 0.33 1.1E-05 34.4 2.3 36 289-327 36-71 (73)
371 2yu8_A Zinc finger protein 347 86.7 0.21 7.1E-06 32.4 1.0 26 302-327 9-34 (46)
372 1jmt_A Splicing factor U2AF 35 86.4 1.7 6E-05 34.1 6.6 55 50-105 42-97 (104)
373 2gqj_A Zinc finger protein KIA 86.4 0.34 1.1E-05 37.1 2.3 29 302-330 21-50 (98)
374 1x5w_A Zinc finger protein 64, 86.4 0.3 1E-05 34.5 1.9 28 302-329 6-33 (70)
375 1whv_A Poly(A)-specific ribonu 86.2 2.8 9.6E-05 33.9 7.6 55 32-97 14-70 (100)
376 3ctr_A Poly(A)-specific ribonu 86.1 1 3.4E-05 36.5 5.0 59 30-97 2-60 (101)
377 1x6e_A Zinc finger protein 24; 85.9 0.32 1.1E-05 34.7 1.8 28 302-329 11-38 (72)
378 2lv2_A Insulinoma-associated p 85.8 0.28 9.7E-06 37.7 1.6 30 302-331 25-54 (85)
379 2dnr_A Synaptojanin-1; RRM dom 85.7 1.9 6.4E-05 34.2 6.3 65 34-107 7-79 (91)
380 1llm_C Chimera of ZIF23-GCN4; 85.3 0.51 1.7E-05 34.9 2.8 40 289-331 18-57 (88)
381 2epp_A POZ-, at HOOK-, and zin 85.2 0.42 1.4E-05 35.2 2.2 29 302-330 10-38 (66)
382 1va1_A Transcription factor SP 84.9 0.36 1.2E-05 29.8 1.5 25 303-327 6-32 (37)
383 1ufw_A Synaptojanin 2; RNP dom 84.9 2.5 8.7E-05 33.7 6.8 65 34-107 15-88 (95)
384 1x6h_A Transcriptional repress 83.8 0.47 1.6E-05 34.4 1.9 30 302-331 12-41 (86)
385 2d9h_A Zinc finger protein 692 83.8 0.48 1.6E-05 34.1 1.9 29 302-330 4-32 (78)
386 2dlq_A GLI-kruppel family memb 83.5 0.67 2.3E-05 35.8 2.8 30 302-331 63-92 (124)
387 2kmk_A Zinc finger protein GFI 83.3 0.57 1.9E-05 33.5 2.2 26 303-328 55-80 (82)
388 1bhi_A CRE-BP1, ATF-2; CRE bin 83.1 0.54 1.8E-05 28.9 1.7 26 303-328 4-31 (38)
389 2dmd_A Zinc finger protein 64, 83.0 0.52 1.8E-05 34.9 1.9 30 302-331 33-62 (96)
390 2wbs_A Krueppel-like factor 4; 82.5 0.7 2.4E-05 33.6 2.4 26 302-327 62-87 (89)
391 2cot_A Zinc finger protein 435 82.1 0.53 1.8E-05 33.8 1.6 29 301-329 14-42 (77)
392 1fv5_A First zinc finger of U- 81.8 0.6 2E-05 30.3 1.6 24 302-325 5-28 (36)
393 2ebt_A Krueppel-like factor 5; 81.7 0.73 2.5E-05 34.3 2.4 26 302-327 72-97 (100)
394 1wjp_A Zinc finger protein 295 81.6 0.36 1.2E-05 37.0 0.5 30 302-331 66-95 (107)
395 2kmk_A Zinc finger protein GFI 81.0 0.6 2.1E-05 33.4 1.6 30 302-331 26-55 (82)
396 1ncs_A Peptide M30F, transcrip 81.0 0.59 2E-05 30.7 1.4 27 302-328 15-43 (47)
397 2ee8_A Protein ODD-skipped-rel 80.6 0.59 2E-05 35.4 1.5 29 303-331 71-99 (106)
398 2ej4_A Zinc finger protein ZIC 80.6 0.75 2.6E-05 34.1 2.0 26 305-330 25-50 (95)
399 2eln_A Zinc finger protein 406 80.5 0.9 3.1E-05 29.6 2.2 26 302-327 6-33 (38)
400 2lt7_A Transcriptional regulat 79.8 0.6 2E-05 38.4 1.4 30 303-332 76-105 (133)
401 2yt9_A Zinc finger-containing 79.8 0.79 2.7E-05 33.9 1.9 40 289-331 22-61 (95)
402 2yrk_A Zinc finger homeobox pr 78.8 0.69 2.4E-05 33.5 1.2 30 305-334 13-43 (55)
403 2ee8_A Protein ODD-skipped-rel 78.8 0.9 3.1E-05 34.4 2.0 30 302-331 42-71 (106)
404 4gzn_C ZFP-57, zinc finger pro 78.8 1 3.6E-05 32.1 2.2 27 303-330 2-28 (60)
405 1llm_C Chimera of ZIF23-GCN4; 78.5 0.66 2.2E-05 34.2 1.1 25 304-328 2-26 (88)
406 2ctd_A Zinc finger protein 512 77.8 1 3.5E-05 34.7 2.0 26 302-327 31-57 (96)
407 1a1h_A QGSR zinc finger peptid 77.7 0.82 2.8E-05 33.3 1.4 29 302-330 31-59 (90)
408 2csh_A Zinc finger protein 297 77.5 0.88 3E-05 34.7 1.6 30 302-331 34-63 (110)
409 2ghf_A ZHX1, zinc fingers and 77.1 1.1 3.6E-05 35.6 2.0 28 303-330 48-75 (102)
410 1ubd_C Protein (YY1 zinc finge 76.6 1.7 5.8E-05 33.7 3.1 26 303-328 60-87 (124)
411 2ent_A Krueppel-like factor 15 76.1 1.2 4E-05 28.7 1.7 27 302-328 9-37 (48)
412 2rpc_A Zinc finger protein ZIC 75.8 1.4 4.7E-05 35.7 2.4 22 306-327 63-84 (155)
413 2eod_A TNF receptor-associated 75.7 1.1 3.6E-05 31.4 1.5 27 301-327 32-59 (66)
414 2j7j_A Transcription factor II 75.2 2.5 8.7E-05 30.0 3.5 24 306-329 59-85 (85)
415 2ej4_A Zinc finger protein ZIC 75.1 1.2 4.1E-05 32.9 1.8 22 306-327 63-84 (95)
416 2gli_A Protein (five-finger GL 74.7 1.4 4.8E-05 35.5 2.2 29 302-330 125-155 (155)
417 1zr9_A Zinc finger protein 593 73.9 0.93 3.2E-05 37.9 0.9 37 302-338 47-84 (124)
418 2i13_A AART; DNA binding, zinc 73.8 1.5 5.3E-05 36.8 2.3 41 288-331 147-187 (190)
419 1x6f_A Zinc finger protein 462 73.7 1.6 5.6E-05 33.3 2.3 30 302-331 22-51 (88)
420 2ghf_A ZHX1, zinc fingers and 73.7 1.3 4.5E-05 35.0 1.7 29 301-329 14-42 (102)
421 2jsp_A Transcriptional regulat 73.4 1.2 4.1E-05 35.1 1.4 33 302-337 18-50 (87)
422 2jp9_A Wilms tumor 1; DNA bind 73.2 1.3 4.5E-05 33.9 1.6 35 289-326 81-117 (119)
423 2dmi_A Teashirt homolog 3; zin 72.5 1.6 5.6E-05 33.5 2.0 25 303-327 17-41 (115)
424 2wbt_A B-129; zinc finger; 2.7 70.9 1.8 6.1E-05 34.0 1.9 26 302-327 71-96 (129)
425 2elu_A Zinc finger protein 406 70.9 1.8 6E-05 28.3 1.5 26 304-329 8-33 (37)
426 2dlk_A Novel protein; ZF-C2H2 70.7 2.4 8.2E-05 30.1 2.4 28 302-329 35-64 (79)
427 2eod_A TNF receptor-associated 70.2 2 6.8E-05 29.9 1.8 23 303-326 8-30 (66)
428 2epa_A Krueppel-like factor 10 69.9 1.5 5E-05 30.9 1.1 24 303-326 45-70 (72)
429 2dlk_A Novel protein; ZF-C2H2 69.6 1.7 5.7E-05 30.9 1.4 27 304-330 6-34 (79)
430 1wjp_A Zinc finger protein 295 68.8 2.6 9E-05 31.9 2.4 24 302-325 39-62 (107)
431 2e72_A POGO transposable eleme 67.1 1.4 4.7E-05 31.2 0.4 35 302-336 9-43 (49)
432 3dxb_A Thioredoxin N-terminall 66.2 7.2 0.00024 33.9 5.0 59 47-105 142-204 (222)
433 2epa_A Krueppel-like factor 10 65.6 3.2 0.00011 29.1 2.1 26 301-326 13-40 (72)
434 1f2i_G Fusion of N-terminal 17 65.6 2 6.9E-05 30.1 1.1 27 302-328 16-44 (73)
435 2wbs_A Krueppel-like factor 4; 65.6 2.9 9.8E-05 30.2 2.0 27 302-328 32-60 (89)
436 1ubd_C Protein (YY1 zinc finge 65.4 2.6 8.8E-05 32.6 1.8 41 289-332 79-121 (124)
437 2j7j_A Transcription factor II 63.7 2.4 8.1E-05 30.2 1.2 19 308-326 34-54 (85)
438 2jp9_A Wilms tumor 1; DNA bind 61.5 4.1 0.00014 31.0 2.3 35 289-326 53-87 (119)
439 2i13_A AART; DNA binding, zinc 60.6 2.7 9.4E-05 35.2 1.2 39 289-330 120-158 (190)
440 2rpc_A Zinc finger protein ZIC 60.3 3.1 0.00011 33.6 1.4 40 289-331 107-148 (155)
441 2lt7_A Transcriptional regulat 58.7 4.6 0.00016 32.9 2.2 36 289-327 37-72 (133)
442 1tf6_A Protein (transcription 58.1 4.5 0.00016 33.8 2.1 26 306-331 162-190 (190)
443 1zw8_A Zinc-responsive transcr 57.6 4.9 0.00017 29.0 2.0 25 306-330 2-28 (64)
444 2ebt_A Krueppel-like factor 5; 56.4 4.8 0.00016 29.7 1.8 40 288-330 31-72 (100)
445 1x3c_A Zinc finger protein 292 56.2 5.8 0.0002 30.2 2.2 29 302-330 24-54 (73)
446 2ctu_A Zinc finger protein 483 55.1 0.62 2.1E-05 32.5 -3.3 28 303-330 37-64 (73)
447 1zw8_A Zinc-responsive transcr 54.8 11 0.00037 27.1 3.4 42 288-329 17-64 (64)
448 2gli_A Protein (five-finger GL 53.0 4.9 0.00017 32.1 1.4 39 289-330 84-124 (155)
449 4a4j_A Pacszia, cation-transpo 43.2 54 0.0018 22.1 5.6 59 34-98 3-61 (69)
450 1vd4_A Transcription initiatio 42.5 9.7 0.00033 26.2 1.4 18 302-319 36-53 (62)
451 1tf6_A Protein (transcription 41.7 13 0.00044 30.9 2.4 25 305-329 104-130 (190)
452 3u1u_A RNA polymerase-associat 40.6 30 0.001 28.7 4.5 37 45-82 18-61 (137)
453 3i2d_A E3 SUMO-protein ligase 38.4 15 0.00051 36.0 2.5 27 289-318 275-301 (371)
454 4fo9_A E3 SUMO-protein ligase 37.9 15 0.00053 35.7 2.5 27 289-318 241-267 (360)
455 1wey_A Calcipressin 1; structu 36.9 51 0.0017 26.6 5.0 63 34-105 5-75 (104)
456 2l9w_A U4/U6 snRNA-associated- 36.5 56 0.0019 26.9 5.3 67 35-107 22-93 (117)
457 2bze_A KIAA0252 protein; human 35.1 39 0.0013 28.7 4.3 37 45-82 32-75 (153)
458 2xmw_A PACS-N, cation-transpor 32.8 93 0.0032 20.3 5.3 56 36-97 6-61 (71)
459 1wir_A Protein arginine N-meth 32.2 23 0.00079 29.2 2.3 36 301-336 11-46 (121)
460 2kt2_A Mercuric reductase; nme 31.8 1.1E+02 0.0037 20.0 6.9 57 36-98 3-59 (69)
461 1vq8_Z 50S ribosomal protein L 30.6 14 0.00048 28.6 0.7 21 301-321 41-61 (83)
462 1yg0_A COP associated protein; 30.6 96 0.0033 19.9 5.0 55 37-97 5-59 (66)
463 2i5o_A DNA polymerase ETA; zin 30.4 27 0.00093 23.3 2.0 19 302-320 6-24 (39)
464 2gmg_A Hypothetical protein PF 28.8 53 0.0018 26.6 3.9 58 257-315 10-77 (105)
465 1l1o_C Replication protein A 7 27.9 8.8 0.0003 33.3 -1.0 21 300-320 57-77 (181)
466 4dgw_A PRE-mRNA-splicing facto 27.9 43 0.0015 33.0 3.9 76 250-329 240-316 (402)
467 3dxs_X Copper-transporting ATP 27.5 91 0.0031 21.2 4.7 58 35-98 4-62 (74)
468 3cc2_Z 50S ribosomal protein L 27.3 17 0.00059 30.0 0.7 22 300-321 73-94 (116)
469 2lcq_A Putative toxin VAPC6; P 27.3 18 0.0006 30.6 0.8 20 299-318 126-145 (165)
470 4i1l_A Scurfin, forkhead box p 26.6 19 0.00065 28.6 0.8 22 309-330 18-39 (93)
471 1wim_A KIAA0161 protein; ring 26.4 66 0.0023 24.1 4.0 44 290-333 35-81 (94)
472 3d45_A Poly(A)-specific ribonu 26.3 1.4E+02 0.0047 29.9 7.3 57 32-97 438-494 (507)
473 2dhx_A Poly (ADP-ribose) polym 24.6 1.8E+02 0.0061 23.4 6.3 53 33-93 7-64 (104)
474 4f3q_A Transcriptional regulat 22.3 1.2E+02 0.004 28.0 5.4 60 32-95 95-157 (247)
475 2cr8_A MDM4 protein; ZF-ranbp 20.2 34 0.0012 24.4 1.0 16 302-318 8-23 (53)
No 1
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-38 Score=307.63 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=131.9
Q ss_pred cccccCcccchhhhhhhhhh--hccccCCCCCCCCcccccCCCCccccchhhhhhhhhchhHHhhhcCCCCCcccccccC
Q psy4687 118 VRTVSGLTSLKPVVQFDMKL--SLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEENTEETEQVD 195 (339)
Q Consensus 118 ~r~~~~it~~~~rl~~Dl~~--~L~~~~~~~~~~~~~~~~~~~np~~~~i~d~liee~s~eeeellg~~~~~~~~~~e~d 195 (339)
+..+|+++|+++||..||.+ +|-..+. .+.+ +..||+.....+..-.+.+ + .|++|....++...+
T Consensus 133 ap~~~P~~S~p~RI~~Dle~a~~Lv~kLD------~e~g-ie~n~l~~~~~~~~~~~~~--~---~~~~g~~~~~~~~~~ 200 (358)
T 3ax1_A 133 APKAPSFTSDPKRILTDVEQTQALVRKLD------SEKK-IEENVLQGSETEKSGREKL--H---SGSTGPVVIIRGLTS 200 (358)
T ss_dssp CCBCCGGGSCHHHHHHHHHHHHHHHHHHH------HHHT-CCCCTTC--------------------CCCCCEEECCSSC
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHH------HhhC-Ccccccccccccccccccc--c---ccCCCcchhhccccc
Confidence 34688999999999999998 3332211 1112 2345554321110000000 0 111111110000011
Q ss_pred -h--hHHHHHHHHHHHHHHhcceeeeccccCCCcccccccCCCCccCCCCCCCCCChhhHHHHHHHHHHhHHhccCCCCC
Q psy4687 196 -P--NVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQE 272 (339)
Q Consensus 196 -~--~l~~~LD~~i~YLR~vh~~cyyc~~ey~~~~el~~~Cp~~H~R~~~p~~~~t~~e~~~W~~~~e~k~~~~l~~~~~ 272 (339)
. ..+++||++|+|||+||+|||||+++|++ .||++|+|+|.++. .....+|.++++.++...|+.
T Consensus 201 ~~~l~~~~~LD~~i~YLRrVH~~dYY~~~E~~~------~~g~~HvR~~~~~~---~~~~~~we~~ld~~w~~~l~~--- 268 (358)
T 3ax1_A 201 VKGLEGVELLDTLVTYLWRVHGLDYYGKVETNE------AKGLRHVRAEGKVS---DAKGDENESKFDSHWQERLKG--- 268 (358)
T ss_dssp CEEECSHHHHHHHHHHHHHHHCEEGGGTEECTT------CCSBCCBC-------------CHHHHHHHHHHHHHHHS---
T ss_pred hhhhhhHHHHHHHHHHHHHHHcccccceEeecC------ccccCeecCCCCCC---CCchhhHHHHHHHHHHHHHcc---
Confidence 1 13799999999999999999999999985 69999999987643 224558999999998888853
Q ss_pred CChHHHHhhcCcccHHHHHHHHHhhhhhc-cC---CeecC--CCCcccccChhhHHhhhhhcchHHHHHhhc
Q psy4687 273 PTPEELDQLGAKKTDAEVEKFIAANTQEI-ST---DKWLC--PLSGKKFKGPDFIRKHIFNKHAEKVEEVKK 338 (339)
Q Consensus 273 ~~~~d~~klG~k~~eeevek~v~~~~~e~-~e---~K~rC--~~C~KlFk~~eFV~KHI~nKH~e~v~~v~~ 338 (339)
.++++.++|++++|+++++||++++++. ++ ||||| ++|+|||||++||+|||+|||||+|+++++
T Consensus 269 -~dp~~~~lg~k~ie~~~~e~l~~~v~k~~dE~~gwK~~C~~~~C~KLFk~~eFV~KHi~~KH~e~v~~~~~ 339 (358)
T 3ax1_A 269 -QDPLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTT 339 (358)
T ss_dssp -CCHHHHHHCHHHHHHHHHHHHGGGEEEEECSSSSEEEEECSSSCCCEESSHHHHHHHHHHHCHHHHHHHHH
T ss_pred -cChHHHHhcCccHHHHHHHHHHHHHHHHhhcccccccCCCCCCcCcccCCHHHHHHHHHhccHHHHHHHHH
Confidence 3478899999999999999999999975 33 38999 699999999999999999999999998875
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.37 E-value=1.1e-06 Score=69.91 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=62.5
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+++.|||++||++++.++|.+++++++....+.|. |+... +.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-cccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4567899999999999999999999999998888774 33322 3334799999999999999999999988875554
No 3
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=4.3e-06 Score=66.55 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=65.2
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.++..-..+++|||.+||++++.++|.+++.+++....+.+-. .++.-..|+|.|....++..|+..||+..+.+-.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3444455678999999999999999999999999998888832 2233457999999999999999999998888766
Q ss_pred ccc
Q psy4687 106 LGA 108 (339)
Q Consensus 106 l~~ 108 (339)
+..
T Consensus 91 l~V 93 (109)
T 1x4a_A 91 LRV 93 (109)
T ss_dssp CEE
T ss_pred EEE
Confidence 653
No 4
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-06 Score=65.78 Aligned_cols=82 Identities=11% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.++.......+|||++||++++.++|.+++.+++....+.+--.. ..+.-..|+|.|....++..|+..||+..+.+-.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344445567899999999999999999999999998888875222 4455678999999999999999999998888766
Q ss_pred ccc
Q psy4687 106 LGA 108 (339)
Q Consensus 106 l~~ 108 (339)
+..
T Consensus 88 l~v 90 (100)
T 2do4_A 88 IKV 90 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.28 E-value=2.3e-06 Score=64.40 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
|.+|||.+||++++.++|.+++.+++....+.+. ||. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 6789999999999999999999999998888775 333 335567899999999999999999999888775554
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3e-06 Score=65.32 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=62.0
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
....++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3567899999999999999999999999999998885332223333479999999999999998999988776444
No 7
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=4.8e-06 Score=65.49 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=64.6
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
-..+++|||.+||++++.++|.+++.+++....+.|.-. ..+....|+|.|....++..|+..||+..+.+-.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 357889999999999999999999999999888887643 3455568999999999999999999999888766653
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=4.1e-06 Score=64.54 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=63.1
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+.+|||.+||++++.++|.+++++++....+.+.--....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345678999999999999999999999999998888852222234456899999999999999999999888775443
No 9
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=8.9e-06 Score=64.10 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCC-CCCCCceEEEEEEecCcccHHHHHHhh-ccccccCc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADP-QPDRRWFRRGWVTFRRDVDIKEICWNL-NNIRLRDC 104 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP-~p~krf~R~GWV~f~~~~~~~~~~~~L-~~~~i~d~ 104 (339)
.+..-..+.+|||.+||++++.++|.+++.+++....+.|--. ....+.-..|+|.|....++..|+..| |+..+.+-
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3444467899999999999999999999999999999988532 223334457999999999999999999 88888876
Q ss_pred ccc
Q psy4687 105 ELG 107 (339)
Q Consensus 105 el~ 107 (339)
.+.
T Consensus 88 ~l~ 90 (107)
T 2cph_A 88 RLV 90 (107)
T ss_dssp BCE
T ss_pred EEE
Confidence 554
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=8.8e-06 Score=64.04 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=64.0
Q ss_pred cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
..-....+|||.+||++++.++|.+++.+++....+.+.-.....+.--.|+|.|....++..|+..||+..+.+-.+..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999999999999999999999999888887532222233337999999999999999999998888766543
No 11
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.21 E-value=5.2e-06 Score=64.10 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.|..-....+|||.+||++++.++|.+++++++....+.|. |+. .+.-..|+|.|....++..|+..||+..+.+-.
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 34455567899999999999999999999999998888874 333 345568999999999999999989998877654
Q ss_pred c
Q psy4687 106 L 106 (339)
Q Consensus 106 l 106 (339)
+
T Consensus 87 l 87 (95)
T 2ywk_A 87 I 87 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 12
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=8.2e-06 Score=63.80 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRY--SGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~--~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..+.....+++|||.+||++++.++|.+++.++ +-...+.++ |. .|+|.|....++..|+..||+..+.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g---~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RD---YAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SS---EEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CC---eEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 445556678999999999999999999999999 667777764 23 89999999999999999999998887
Q ss_pred ccccc
Q psy4687 104 CELGA 108 (339)
Q Consensus 104 ~el~~ 108 (339)
..+..
T Consensus 79 ~~l~v 83 (99)
T 2cpd_A 79 SPIEV 83 (99)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 66653
No 13
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=6.5e-06 Score=63.77 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=59.6
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-E-ecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-A-IADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-s-LSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||.+||++++.++|.+++.+++....+ . +.|+...+ |+|.|....++..|+..||+..+.+-.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-----VNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 356899999999999999999999999998887 3 45554432 99999999999999999999888875554
No 14
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=8.1e-06 Score=64.35 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..|..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 34444566789999999999999999999999999988888522222344568999999999999999999998888765
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 95 l~ 96 (106)
T 1p27_B 95 IS 96 (106)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.2e-05 Score=63.26 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+.....+.+|||.+||++++.++|.+++.+++....+.|- |+.. .-..|+|.|....++..|+..||+..+.+-.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG---SKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT---TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34444667899999999999999999999999998888874 3332 3457999999999999999999998888766
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 85 l~ 86 (103)
T 2cq3_A 85 IE 86 (103)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=7.3e-06 Score=63.82 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=62.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
.+++|||++||++++.++|.+++.+++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4679999999999999999999999999988888532223334458999999999999999899998888766543
No 17
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=1.3e-05 Score=62.91 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+..-....+|||.+||++++.++|.+++.+++....+.|- |+...| ..|+|.|....++..|+..|++..+.+-.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND---PYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSC---CEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCC---CEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34445667999999999999999999999999999888874 333333 37999999999999999889998888765
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 85 l~ 86 (103)
T 2cqi_A 85 VK 86 (103)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=6.6e-06 Score=64.66 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=63.9
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
-..+.+|||.+||++++.++|.++|++++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+..+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 356789999999999999999999999999888888532222344458999999999999999999998888766653
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.15 E-value=5.8e-06 Score=62.64 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=61.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3567899999999999999999999999998888853222334456899999999999999999999888775543
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.14 E-value=1.2e-05 Score=63.38 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
++.+-....+|||.+||++++.++|.+++.++ |...+.+--.....+.-..|+|.|....++..|+ .||+..+.+-.+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 44445567899999999999999999999999 7888877522222344458999999999999998 899988877665
Q ss_pred c
Q psy4687 107 G 107 (339)
Q Consensus 107 ~ 107 (339)
.
T Consensus 86 ~ 86 (103)
T 2dng_A 86 R 86 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.14 E-value=4.3e-06 Score=63.09 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 356899999999999999999999999999888874222223344579999999999999998999988877544
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-05 Score=62.91 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=63.4
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
...+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345789999999999999999999999999988888522222233457999999999999999999999888866653
No 23
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.14 E-value=7.9e-06 Score=64.97 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..|..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+..
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34444566789999999999999999999999999999988422222234458999999999999999899998887765
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 98 l~ 99 (110)
T 1oo0_B 98 IQ 99 (110)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.13 E-value=1.6e-05 Score=63.72 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=63.9
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..-...+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334678999999999999999999999999988888752222334556899999999999999999999888876654
No 25
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.13 E-value=3e-06 Score=64.30 Aligned_cols=75 Identities=9% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.++|||.+||++++.++|.+++.+++....+.+- |+...++....|+|.|....++..|+..||+..+.+-.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 46789999999999999999999999999888874 2222222445899999999999999999999988886654
No 26
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-05 Score=62.70 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=62.8
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.......+|||.+||++++.++|.+++.+++....+.+--.....+.-..|||.|....++..|+.. ++..+.+-.+.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456678999999999999999999999999988887743222234445899999999999988877 88877776554
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.12 E-value=1.8e-05 Score=62.22 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=60.4
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..+++|||.+||++++.++|.+++.+++....+.|- |+ ..+.-..|+|.|....++..|+..||+..+.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 457899999999999999999999999998888875 33 33445689999999999999999999988876
No 28
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.12 E-value=1.3e-05 Score=61.39 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
...++|||.+||++++.++|.+++++++....+.+-- ...+.-..|+|.|....++..|+..|++..+.+-.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4568999999999999999999999999888887753 22234457999999999999999999998888866553
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.11 E-value=8.4e-06 Score=63.37 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=61.9
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 57899999999999999999999999999988853322234445899999999999999999999888876554
No 30
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.11 E-value=4.9e-06 Score=67.53 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCCCCCCCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687 19 GGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN 98 (339)
Q Consensus 19 ~~~~~~~~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~ 98 (339)
||++.+-..|.+--..+.|||.+||++++.++|.+++.+++....+.|--. -.|+|.|....++..|+..||+
T Consensus 1 gg~~~~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 1 GGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN 73 (115)
T ss_dssp ----------------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCC
Confidence 444444444444456789999999999999999999999999888888422 5799999999999999999999
Q ss_pred ccccCcc
Q psy4687 99 IRLRDCE 105 (339)
Q Consensus 99 ~~i~d~e 105 (339)
..+.+-.
T Consensus 74 ~~~~gr~ 80 (115)
T 3beg_B 74 TKFRSHE 80 (115)
T ss_dssp CBCCCTT
T ss_pred CEECCcE
Confidence 8888755
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=1.8e-05 Score=62.74 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=63.8
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc------ccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN------NIR 100 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~------~~~ 100 (339)
|.....+.+|||.+||++++.++|.+++.+++....+.|. |+. ..+.-..|+|.|....++..|+..+| +..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 4444567899999999999999999999999999888885 333 22334579999999999999999998 887
Q ss_pred ccCcccc
Q psy4687 101 LRDCELG 107 (339)
Q Consensus 101 i~d~el~ 107 (339)
+.+-.+.
T Consensus 88 ~~g~~l~ 94 (111)
T 1x4h_A 88 LDGRQLK 94 (111)
T ss_dssp SSSCEEE
T ss_pred EcCEEEE
Confidence 7775554
No 32
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.10 E-value=1.7e-05 Score=65.21 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.......+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33444567899999999999999999999999999998884322223445689999999999999998899887776443
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.5e-05 Score=61.47 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=62.0
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..++|||.+||++++.++|.+++.+++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 467999999999999999999999999988888753222223344899999999999999999999988876654
No 34
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=1.3e-05 Score=61.59 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=60.2
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
..++|||.+||++++.++|.+++.+++....+.+. |. .|+|.|....++..|+..||+..+.+..+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TT---EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CC---EEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 45799999999999999999999999999888886 34 6999999999999999999998888876653
No 35
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.08 E-value=1.8e-05 Score=63.58 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=63.3
Q ss_pred cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..++..||+..+.+-.+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 334456899999999999999999999999999988886322223445689999999999999998899988877544
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.5e-05 Score=63.56 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=62.6
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCee--------EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFL--------RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNN 98 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~--------~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~ 98 (339)
+..-...++|||.+||++++.++|.+++.+++... .+.|- |+. ..+.-..|+|.|....++..|+..||+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-TGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-TCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC-CCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 34446678999999999999999999999998776 35553 222 223345799999999999999999999
Q ss_pred ccccCccccc
Q psy4687 99 IRLRDCELGA 108 (339)
Q Consensus 99 ~~i~d~el~~ 108 (339)
..+.+-.+..
T Consensus 88 ~~~~g~~l~V 97 (113)
T 2cpe_A 88 KDFQGSKLKV 97 (113)
T ss_dssp CEETTEECEE
T ss_pred CccCCCEEEE
Confidence 8888766553
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=1.5e-05 Score=62.87 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+.+-....+|||.+||++++.++|.+++.+++ ...+.|- |+....+.-..|+|.|....++..|+ .||+..+.+-.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 344445668999999999999999999999997 8888874 33321334457999999999999998 89998887766
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 86 l~ 87 (104)
T 1wi8_A 86 IR 87 (104)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 38
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=1.4e-05 Score=62.48 Aligned_cols=74 Identities=26% Similarity=0.406 Sum_probs=62.7
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.......+|||.+||++++.++|.+++.+++....+.+.- .| ..|+|.|....++..|+..|++..+.+..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~k---g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DK---GFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TT---TEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CC---CEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 34456678999999999999999999999999988888752 23 3799999999999999999999888876654
No 39
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.06 E-value=1.1e-05 Score=63.52 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=60.4
Q ss_pred ccCCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+++|||.+||+ +++.++|.+++++++....+.++ | ..|+|.|....++..|+..||+..+.+..+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~---g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----N---AFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----S---SEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----C---CEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334568999999999 99999999999999999999995 3 4799999999999999999999888775554
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=1.3e-05 Score=62.79 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4568999999999999999999999999998888853222223344899999999999999989999988876654
No 41
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.05 E-value=1.6e-05 Score=62.62 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=61.0
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+++|||.+||++++.++|.+++.+++....+.+. |. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KD---YAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SS---CEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CC---EEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 34567899999999999999999999999999998885 33 799999999999999999999888876654
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.7e-05 Score=62.13 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+++|||.+||++++.++|.+++.+++-...+.|. |+ ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 347899999999999999999999999988877774 33 245567899999999999999999999888876654
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.04 E-value=2.8e-05 Score=61.16 Aligned_cols=72 Identities=7% Similarity=0.155 Sum_probs=58.5
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL 101 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i 101 (339)
.-..+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 345678999999999999999999999999988888743222223334799999999999999999998776
No 44
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.7e-05 Score=61.11 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=60.3
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
..+++|||.+||++++.++|.+++++++....+.+. +. .|+|.|....++..|+..||+..+.+-.+..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SS---EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CC---EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 456899999999999999999999999998888885 23 7999999999999999999998888766653
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=8.4e-06 Score=63.36 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCC--CCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQP--DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p--~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
.+++|||.+||++++.++|.+++.+++....+.+. |+.. ..+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 35789999999999999999999999998888875 3331 2245568999999999999999999998888766653
No 46
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.04 E-value=1.8e-05 Score=63.41 Aligned_cols=79 Identities=9% Similarity=0.147 Sum_probs=63.8
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
.-..+++|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3345689999999999999999999999999888877422222344458999999999999999999998888766653
No 47
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.04 E-value=2.3e-05 Score=61.17 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--------EEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--------VAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~--------lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
.+.+...+++|||.+||++++.++|.+++++++.... +.+. |+. ..+.-..|+|.|....++..|+..||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4455567899999999999999999999999998776 5553 332 23445689999999999999998899
Q ss_pred cccccCccc
Q psy4687 98 NIRLRDCEL 106 (339)
Q Consensus 98 ~~~i~d~el 106 (339)
+..+.+-.+
T Consensus 85 g~~~~g~~l 93 (99)
T 2la6_A 85 GKEFSGNPI 93 (99)
T ss_dssp TCBSSSSBC
T ss_pred CCEeCCcEE
Confidence 988877444
No 48
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.9e-05 Score=63.05 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=57.9
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
.....|||.+||++++.++|.+++.+++....+.|--. ..|+|.|....++..|+..||+..+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 56789999999999999999999999999888887432 579999999999999999999988877
No 49
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=1.8e-05 Score=61.92 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=57.6
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
...+++|||.+||++++.++|.+++..+ ..+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRET-GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSS-CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCC-CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3567899999999999999999999855 344432 3332 244458999999999999999999998888766543
No 50
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.02 E-value=1.8e-05 Score=64.38 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.|..-..+++|||.+||++++.++|.+++.+++....+.|- |+. ..+.-..|+|+|....++..|+..||+..+.+-.
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34444567899999999999999999999999999988884 333 2233457999999999999999999999888766
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 94 l~ 95 (126)
T 3ex7_B 94 IS 95 (126)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 51
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=3.8e-05 Score=61.36 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=63.5
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
...-...++|||.+||++++.++|.+++.+++....+.|- |+ ..+.-..|+|.|....++..|+..||+..+++..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 3344566899999999999999999999999998888874 33 44555689999999999999999999988876544
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.02 E-value=1.9e-05 Score=60.02 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=59.8
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+|||.+||++++.++|.+++++++....+.+. |+. ..+....|+|.|....++..|+ .+|+..+.+-.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEE
Confidence 4689999999999999999999999998888774 332 2344568999999999999998 8999888876654
No 53
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=2.2e-05 Score=60.83 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=59.8
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||.+||++++.++|.+++.+++....+ +-|+...+ .|+|.|....++..|+. ||+..+.+-.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~----~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV----FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC----EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc----EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 345799999999999999999999999999987 66666654 89999999998998888 998888775554
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=4e-05 Score=61.49 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=62.9
Q ss_pred CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..+..-...++|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..+++ .+.+-.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3444556779999999999999999999999999998888863322223334899999999988888887776 666655
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 88 l~ 89 (116)
T 2cqd_A 88 AN 89 (116)
T ss_dssp CE
T ss_pred EE
Confidence 44
No 55
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=3.5e-05 Score=59.94 Aligned_cols=70 Identities=13% Similarity=0.271 Sum_probs=60.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc--Ccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR--DCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~--d~el~ 107 (339)
..+++|||.+||++++.++|.+++.+++....+.+.-. |. .|+|.|....++..|+..||+..+. +..+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DS---FAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SC---CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CC---EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 44689999999999999999999999999999888632 33 7999999999999999999998888 65554
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.01 E-value=1.7e-05 Score=62.54 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=64.0
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
+.....+++|||.+||++++.++|.+++.+++....+.|- |+ ..+....|+|.|....++..|+..||+..+.+-.+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4445678999999999999999999999999998888774 33 44556789999999999999999999988876444
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.01 E-value=2.3e-05 Score=65.10 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=63.6
Q ss_pred cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.....+.+|||.+||++++.++|.+++.+++....+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS-RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS-SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334557899999999999999999999999998888874 3332 23345899999999999999999999888876554
No 58
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.01 E-value=8.9e-06 Score=65.47 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=61.7
Q ss_pred cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
..-..+++|||.+||++++.++|.+++.+++....+.+. | ..|+|.|....++..|+..||+..+.+-.+..
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----k---g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----N---GFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----T---TEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----C---CEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334567899999999999999999999999999888887 3 37999999999999999999999887766654
Q ss_pred c
Q psy4687 109 I 109 (339)
Q Consensus 109 ~ 109 (339)
.
T Consensus 98 ~ 98 (108)
T 2jvo_A 98 V 98 (108)
T ss_dssp E
T ss_pred E
Confidence 3
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.00 E-value=2.7e-05 Score=62.52 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
-+..-..+.+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..+|+..+.+-.+
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34444566899999999999999999999999998888875222223444589999999999999999999988887655
Q ss_pred c
Q psy4687 107 G 107 (339)
Q Consensus 107 ~ 107 (339)
.
T Consensus 99 ~ 99 (108)
T 2jrs_A 99 K 99 (108)
T ss_dssp E
T ss_pred E
Confidence 4
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4.9e-05 Score=59.59 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhh-cCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcccc-ccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKR-YSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR-LRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~-~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~-i~d~el~ 107 (339)
..+.+|||.+||++++.++|.+++.+ ++....+.|. |+ ..+.-..|+|.|....++..|+..|++.. +.+-.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45689999999999999999999999 9988888774 33 33455689999999999999999899888 8776554
No 61
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=2.5e-05 Score=59.94 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=60.3
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
....+|||.+||++++.++|.+++++++....+.+. +. .|+|.|....++..|+..||+..+.+-.+..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KD---YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SS---CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CC---EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456789999999999999999999999998888886 23 7999999999999999999998888766553
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.2e-05 Score=62.03 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-AIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-sLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..++|||.+||++++.++|.+++.+++....+ .+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 35789999999999999999999999887666 5532212223345899999999999999998999888776654
No 63
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.98 E-value=2.2e-05 Score=66.37 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=65.9
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+...-.+++|||.+||++++.++|.+++.+++....+.|. |+. ..+.--.|+|+|....++..|+..||+..|.+-.
T Consensus 32 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 32 QEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp -CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34445567899999999999999999999999999888884 333 2344458999999999999999999999888766
Q ss_pred ccc
Q psy4687 106 LGA 108 (339)
Q Consensus 106 l~~ 108 (339)
+..
T Consensus 111 l~V 113 (156)
T 1h2v_Z 111 IRT 113 (156)
T ss_dssp CEE
T ss_pred EEE
Confidence 653
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=1.7e-05 Score=63.93 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+.|||++||++++.++|.++|.+++....+.|. +.|.| |+|.|....++..|+..||+..+.+..+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~---afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGIT---AIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSC---EEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCE---EEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 5789999999999999999999999999999886 24554 99999999999999999999888775543
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.97 E-value=2.7e-05 Score=63.25 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+.+|||.+||++++.++|.+++++++....+.+.-.. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 35789999999999999999999999998888885332 334456899999999999999999999888876654
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=2.5e-05 Score=60.99 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=61.5
Q ss_pred cCCCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
....++|||.+||++++.++|. +++.+++....+.+- |+.. |.| |+|.|....++..|+..||+..+.+-.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~---afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLK---AVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCC---EEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeE---EEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456789999999999999999 999999999988885 3433 554 999999999999999999998888755
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 82 l~ 83 (96)
T 2dgx_A 82 IL 83 (96)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.95 E-value=2.2e-05 Score=63.87 Aligned_cols=77 Identities=14% Similarity=0.257 Sum_probs=63.0
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..-.+++|||.+||++++.++|.+++++++....+.+--.. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566899999999999999999999999998888874222 334445899999999999999988999888775543
No 68
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.4e-05 Score=60.12 Aligned_cols=71 Identities=14% Similarity=0.269 Sum_probs=56.8
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCee-EEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFL-RVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~-~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+++|||.+||++++.++|.+++.+++... .+.. + ..+ ..|+|.|....++..|+..||+..+.+-.+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~-~--~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW-Q--GPR---RRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEE-E--TTT---TEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEc-C--CCC---cEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34568999999999999999999999998763 2222 1 223 3699999999999999999999988876654
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.5e-05 Score=62.28 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
....+|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 35689999999999999999999999998888887422222234457999999999999999899998888766653
No 70
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=3e-05 Score=60.66 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=59.3
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..++|||.+||++++.++|.+++.+++....+.+. ..|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKG---CCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTT---EEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 35789999999999999999999999998888886 3344 699999999999999989999888775554
No 71
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.94 E-value=1e-05 Score=65.50 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=58.5
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
++.|||++||++++.++|.+++++++....+-|- |+... -..|+|.|....++..|+..|++..+.+-.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~---kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE---EEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCC---CceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 5679999999999999999999999998877663 33322 23699999999999999999999888875543
No 72
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=5.9e-05 Score=58.73 Aligned_cols=75 Identities=12% Similarity=0.234 Sum_probs=60.1
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+. +++..+.+-.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 356799999999999999999999999999888885221122233479999999999998887 898888776554
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.5e-05 Score=60.35 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=59.4
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+.+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4679999999999999999999999999988887532222233347999999999999999999988777633
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=1e-05 Score=63.38 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3457899999999999999999999999888887752222233445899999999999999988999888776554
No 75
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.92 E-value=4.8e-05 Score=60.57 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=61.4
Q ss_pred CcccCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 28 PRALHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
+.+...+++|||.+||++ ++.++|.+++.+++....+.+ .| ..|+|.|....++..|+..||+..+.+-.+
T Consensus 21 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 21 NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HK---GYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ET---TEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eC---CEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 333344689999999999 999999999999999888888 23 369999999999999999999988887666
Q ss_pred cc
Q psy4687 107 GA 108 (339)
Q Consensus 107 ~~ 108 (339)
..
T Consensus 93 ~V 94 (110)
T 1wf1_A 93 DI 94 (110)
T ss_dssp CE
T ss_pred EE
Confidence 53
No 76
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.92 E-value=4.2e-05 Score=61.14 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=60.0
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+.+|||.+||++++.++|.+++++++....+.+.-.-..+ ..|+|.|....++..|+..||+..+.+-.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 78 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV 78 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTT---TCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC---cEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 46799999999999999999999999999888884211123 3699999999999999999999988876654
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.90 E-value=1.5e-05 Score=62.76 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=58.7
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCC-CCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQ-PDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~-p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+.....+.+|||.+||++++.++|.+++++++ ...+.+.--. ...+.-..|+|.|....++..|+ .+|+..+.+-.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 445556779999999999999999999999998 8888875221 23344457999999999999998 89998887755
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 90 l~ 91 (100)
T 2j76_E 90 IR 91 (100)
T ss_dssp CC
T ss_pred EE
Confidence 54
No 78
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.90 E-value=2.8e-05 Score=59.40 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=59.4
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|.... +..++..||+..+.+-.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence 47999999999999999999999999988888532222344568999999998 8888889999888876554
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=8.2e-05 Score=58.30 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHH
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~ 94 (339)
.++....+++|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 55666778999999999999999999999999998888774222223444589999999988887765
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.88 E-value=3.4e-05 Score=66.15 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=63.8
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.|.....+++|||.+||++++.++|.+++.+++....+.|- |+.. .+.-..|+|.|....++..|+..||+..+.+-.
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT-GFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT-SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC-CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34444567889999999999999999999999999888885 3322 234458999999999999999999998888766
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 144 l~ 145 (165)
T 1rk8_A 144 IQ 145 (165)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 81
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=5.7e-05 Score=60.84 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=59.0
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccc--cccCcc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI--RLRDCE 105 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~--~i~d~e 105 (339)
+.....+..|||++||++++.++|.++|.+++....+.+.. .|. .|+|.|....++..|+..|++. .+.+-.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg---~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKR---QALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 33445578999999999999999999999999999988752 344 6999999999888888877643 356655
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 83 l~ 84 (104)
T 1wex_A 83 AF 84 (104)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 82
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=3.2e-05 Score=62.46 Aligned_cols=68 Identities=4% Similarity=0.016 Sum_probs=56.6
Q ss_pred CCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc--ccCccc
Q psy4687 33 RTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR--LRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~--i~d~el 106 (339)
....|||++||+ +++.++|.+++..++....+.|- ..|.| |+|.|....++..|+..||+.. +.+-.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~---~~kg~---aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL---NKINE---AFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC---SSSSC---EEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE---cCCCE---EEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 568999999999 99999999999999999999884 34554 9999999999998888887543 555444
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=4e-05 Score=59.55 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=59.2
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCee-EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFL-RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~-~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+.+|||.+||++++.++|.+++.+++... .+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT-GIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS-CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC-CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 468999999999999999999999999877 77664 3332 233457999999999999999889998887755
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=3.9e-05 Score=61.41 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=61.4
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
-..+++|||.+||++++.++|.+++++++....+.+. |+.. .-..|+|.|....++..|+..||+..+.+..+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG---SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB---CTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC---CceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3466899999999999999999999999998888874 3322 334799999999999999999999888875554
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.84 E-value=3.6e-05 Score=60.18 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=59.0
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
++|||.+||++++.++|.+++++++....+.+.-. .+. .|+|.|....++..|+..|++..+.+..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPG---FAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSS---EEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCC---EEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 57999999999999999999999999888887533 333 7999999999999999999998888766543
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.84 E-value=1.5e-05 Score=61.66 Aligned_cols=73 Identities=16% Similarity=0.342 Sum_probs=60.1
Q ss_pred CCCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+++|||.+||++++.++|. +++.+++....+.+......+ ..|+|.|....++..|+..||+..+.+..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMR---GQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHT---TCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcC---cEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 999999999888875211222 3699999999999999999999888775554
No 87
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=2.2e-05 Score=60.92 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-AIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-sLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+.|||.+||++++.++|.+++.+++....+ -+.++. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 456899999999999999999999999765322 122222 223456899999999999999999999888775554
No 88
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.83 E-value=4.1e-05 Score=63.25 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=63.1
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAI 109 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~ 109 (339)
..+.+|||.+||++++.++|.+++++++....+.+- |+. ..+.-..|+|.|....++..|+..||+..+.+-.+...
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345799999999999999999999999998888774 333 22344589999999999999999999988888666543
No 89
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.83 E-value=3.5e-05 Score=64.45 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=64.0
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
|.....+++|||.+||++++.++|.+++++++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44445678999999999999999999999999998888853222223334799999999999999888999888876654
No 90
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.82 E-value=2.6e-05 Score=63.22 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+|||.+||++++.++|.+++++++....+.| -|+... +---.|+|+|....++..|+..||+..+.+-.+.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg-~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTR-KHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC-ceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 468999999999999999999999999888876 355432 3345799999999999999999999988875554
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=3e-05 Score=57.26 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=55.9
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..++ ..+.+-.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 479999999999999999999999988877774222222334589999999999999888777 76666443
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.82 E-value=8.1e-05 Score=59.06 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=60.9
Q ss_pred CCCCeEEeeecCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc-
Q psy4687 32 HRTSSIFLRNLAPTI------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC- 104 (339)
Q Consensus 32 h~t~slfIk~IpP~i------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~- 104 (339)
..+++|||.+||+++ +.++|.+++++++....+.+- . ...+--..|+|+|....++..|+..||+..+.+-
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-C-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-C-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 889999999999999998886 2 2223334899999999999999999999888874
Q ss_pred ccc
Q psy4687 105 ELG 107 (339)
Q Consensus 105 el~ 107 (339)
.+.
T Consensus 91 ~l~ 93 (105)
T 2nlw_A 91 TFR 93 (105)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.81 E-value=3.2e-05 Score=59.53 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=57.0
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYS--GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~--GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+|||.+||++++.++|.+++++++ ....+.+. |+... +.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence 4799999999999999999999999 77777664 44332 3345799999999999999999999888876654
No 94
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.79 E-value=1.6e-05 Score=61.28 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=56.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
..++|||++||++++.++|.+++.+++....+.+ .|+ ...+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 3589999999999999999999999976542222 222 223455789999999999999998899988877544
No 95
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=4.2e-05 Score=59.60 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=59.2
Q ss_pred CCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+++|||.+||+ +++.++|.+++++++....+.++ | ..|+|.|....++..|+..|++..+.+-.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----N---AFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----T---TEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----C---CEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4578999999999 99999999999999999998885 3 3799999999999999989999888776554
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.77 E-value=4.8e-05 Score=56.11 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=54.3
Q ss_pred eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+. +++..+.+-.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 48999999999999999999999988888774222223444589999999988887765 7777776643
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=8.3e-05 Score=59.28 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=57.9
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCe----eEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGF----LRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF----~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
...+++|||.+||++++.++|.+++.+++.. ..+-+. ..+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999765 333333 22233479999999999999999999988877665
Q ss_pred c
Q psy4687 107 G 107 (339)
Q Consensus 107 ~ 107 (339)
.
T Consensus 98 ~ 98 (115)
T 2cpx_A 98 V 98 (115)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=7.3e-05 Score=59.41 Aligned_cols=70 Identities=7% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...++|||.+||++++.++|.+++.+++....+.|.-. | ..|+|.|....++..|+..|++..+.+-.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---K---GYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---T---TEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---C---CEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45689999999999999999999999999988888633 3 3799999999999999989999888876654
No 99
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.76 E-value=9.8e-05 Score=61.68 Aligned_cols=72 Identities=10% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..++|||++||++++.++|. +++.+++....+.+..-...|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG---~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSG---KAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCC---CEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCC---EEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 36789999999999998865 6899999998888743223344 499999999999999999999888775543
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=6.9e-05 Score=56.46 Aligned_cols=69 Identities=12% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhh-ccccccCccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL-NNIRLRDCEL 106 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L-~~~~i~d~el 106 (339)
..+.+|||.+||++++.++|.+++.+++....+.+.- .| ..|+|.|....++..|+..| ++..+.+-.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~k---g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQ---QCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GG---TEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CC---CEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 5678999999999999999999999999988888763 23 36999999999999998888 7777766443
No 101
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.74 E-value=0.00011 Score=55.71 Aligned_cols=70 Identities=16% Similarity=0.345 Sum_probs=55.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
....+|||.+||++++.++|.+++.+++....+.+- |+. ..+....|+|.|....++..|+. +++..+.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 456799999999999999999999999998888874 333 23455689999999998888874 45555554
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.74 E-value=6.3e-05 Score=56.65 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=57.0
Q ss_pred CeEEeeecCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687 35 SSIFLRNLAPTI------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC 104 (339)
Q Consensus 35 ~slfIk~IpP~i------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~ 104 (339)
++|||.+||+++ +.++|.+++++++....+.+- + ...+.-..|+|.|....++..|+..||+..+.+-
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-C-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-C-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 689999999999 889999999999999998886 2 2223334799999999999999988999888764
No 103
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.74 E-value=6.3e-05 Score=56.81 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhc----C-------CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRY----S-------GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR 100 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~----~-------GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~ 100 (339)
....+|||.+||++++.++|.++++++ + -...+.+.-+ | ..|+|.|....++..|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---k---g~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---K---NFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---S---SEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---C---cEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356799999999999999999999999 4 4666666422 3 47999999999999999 999988
Q ss_pred ccCccc
Q psy4687 101 LRDCEL 106 (339)
Q Consensus 101 i~d~el 106 (339)
+.+-.+
T Consensus 77 ~~g~~l 82 (87)
T 2hzc_A 77 FQGQSL 82 (87)
T ss_dssp ETTEEC
T ss_pred ECCeEE
Confidence 877554
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.73 E-value=7.3e-05 Score=60.52 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=55.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc--ccCcc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR--LRDCE 105 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~--i~d~e 105 (339)
....|||++||++++.++|.+++.+++.+..+.+- +.|+ .|||.|....++..|+..+++.. +.+-.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---~~kg---~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---PKKR---QALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---cCCC---EEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 35689999999999999999999999999998884 3454 69999999999999988888654 44533
No 105
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.72 E-value=0.00022 Score=61.03 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=62.6
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||++||++++.++|.++|++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+..+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4568999999999999999999999999988887742222334456799999999999999999999888776554
No 106
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=5.5e-05 Score=60.50 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.+|||.+||++++.++|.+++.+++....+.|- |+.. .+.-..|+|.|....++..|+ .||+..+.+-.+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS-RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS-SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC-CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 3699999999999999999999999999988884 3332 223347999999999999999 9999888876654
No 107
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.72 E-value=0.00015 Score=61.00 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+..|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4578999999999999999999999999998888853222223344799999999999999989999888776554
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.71 E-value=7.2e-05 Score=60.58 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..++ .+|+..+.+-.+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIK 108 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 479999999999999999999999999888877422122344568999999999999888 7999888776654
No 109
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.70 E-value=0.00011 Score=60.90 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.++|||++||++++.++|.+++++++....+.+---....+.-..|+|.|....++..|+..|++..+.+..+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 57899999999999999999999999988887742222334556899999999999999888999888776554
No 110
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.70 E-value=0.00016 Score=60.63 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=62.1
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+......++|||.+||++++.++|.+++++++....+.+.-- .|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPG---FAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCS---EEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCc---EEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 334456789999999999999999999999999998888522 233 799999999999999989999888775543
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=0.00011 Score=58.02 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCC-eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSG-FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~G-F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~el 106 (339)
..++|||.+||++++.++|.+++.+++. ...+.+- .+....+--..|+|.|....++..|+..|+ +..+.+-.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3578999999999999999999999986 9998885 222222333479999999999999988886 466666444
No 112
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.68 E-value=4.1e-05 Score=59.58 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=53.3
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc-cccccCccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN-NIRLRDCEL 106 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~-~~~i~d~el 106 (339)
++.|||++||++++.++|.+++++++ ....+.|. |+... +--..|+|.|....++..|+..++ +..+.|-.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 57899999999999999999999998 46666553 44321 222369999999998888887664 445666444
No 113
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=3.7e-05 Score=59.21 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCC-eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc-ccccCccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSG-FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN-IRLRDCELGA 108 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~G-F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~-~~i~d~el~~ 108 (339)
..++|||.+||++++.++|.+++.+++. ...+.+ ..+. .|+|.|....++..|+..||+ ..+.+..+..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g---~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSG---YAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETT---EEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCC---EEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4578999999999999999999999987 333333 1233 699999999999999999999 8888866653
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=5.8e-05 Score=62.15 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.7
Q ss_pred cCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~ 107 (339)
...+..|||++||++ ++.++|.++|.+++....+.|. ..|. .|+|.|....++..|+..|++ ..+.+-.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKS---QAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTT---EEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 344789999999998 9999999999999999999985 3344 599999999988888887764 346665443
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=0.00014 Score=56.67 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA 108 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~ 108 (339)
..+++|||.+||++++.++|.+++.+++-. ++. -+ ...+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~-~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI-KVP-QN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE-ECC-BC--SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE-EEE-EC--CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 457899999999999999999999997543 221 22 22344458999999999999999889998888766543
No 116
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.66 E-value=0.00016 Score=59.83 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=60.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..+.+|||++||++++.++|.+++.+++....+.+.-.....+--..|+|.|....++..|+..||+..+.+..
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 35678999999999999999999999999888877422222334567999999999999999999998887644
No 117
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=0.00019 Score=55.80 Aligned_cols=73 Identities=14% Similarity=0.311 Sum_probs=60.1
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
..+....+++|||.++ +++.++|.+++.+++....+.+. ..|. .|+|.|....++..|+..||+..+.+-.+
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRN---CAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3344456789999995 99999999999999999999884 3344 59999999999999998999988877555
Q ss_pred c
Q psy4687 107 G 107 (339)
Q Consensus 107 ~ 107 (339)
.
T Consensus 80 ~ 80 (97)
T 1x5p_A 80 K 80 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 118
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.65 E-value=4e-05 Score=59.24 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+|||.+||++++.++|.+++.+++....+ ....+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999999998544433 22223345899999999999999998999888775554
No 119
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=9.5e-05 Score=56.63 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
....|||++||++++.++|.+++..+ +...+.|--. ...+.-..|+|.|....++..|+. +|+..+.+-.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 45789999999999999999999999 8887776422 344556789999999999999988 99887776444
No 120
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0002 Score=59.14 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=61.2
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
...+.+|||++||++++.++|.+++++++....+.+- |+.. .+--..|+|.|....++..|+..||+..+.+..+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT-GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT-CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 3457799999999999999999999999998888774 3322 2333479999999999999999999988877544
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=0.00024 Score=56.93 Aligned_cols=71 Identities=11% Similarity=0.199 Sum_probs=56.5
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDCEL 106 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~el 106 (339)
....+..|||++||++++.++|.++|.+++....+.+-. .|. .|+|.|....++..|+..++ +..+.+-.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---GKN---QAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 335578999999999999999999999999998887742 244 59999999988888887664 344555444
No 122
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.59 E-value=0.0002 Score=59.59 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=60.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..+.+|||++||++++.++|.+++++++....+.+.-.....+--..|+|.|....++..|+..||+..+.+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 456899999999999999999999999998888874332233444579999999999999999999988866
No 123
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.59 E-value=0.00023 Score=61.76 Aligned_cols=76 Identities=8% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||++||++++.++|.++|++++....+.+--.....+--..|+|.|....++..|+..||+..+.+..+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 4557999999999999999999999999999888853222333445899999999999999999999988886654
No 124
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.59 E-value=0.00019 Score=62.86 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=62.0
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+++|||.+||++++.++|.+++.+++....+.|.-.. ..+.-..|+|.|....++..|+..+|+..+.+-.+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 45799999999999999999999999999888885322 344556899999999999999989999888775544
No 125
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00018 Score=57.58 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=61.9
Q ss_pred cCCCCeEEeeecCCCCCHHHHH---HHHhhcCCeeEEEecCCCC---CCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVE---NLCKRYSGFLRVAIADPQP---DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC 104 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele---~~ck~~~GF~~lsLSDP~p---~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~ 104 (339)
....+.|||.+||++++.++|. +++.+++....+.+--... .++---.|+|+|....++..|+..||+..+.+-
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3567899999999999999999 9999999998888832211 112234899999999999999999999888775
Q ss_pred ccc
Q psy4687 105 ELG 107 (339)
Q Consensus 105 el~ 107 (339)
.+.
T Consensus 92 ~l~ 94 (111)
T 2cpi_A 92 TLK 94 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.57 E-value=0.00017 Score=62.01 Aligned_cols=73 Identities=5% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYS--GFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~--GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+|||.+||++++.++|.+++.+++ ....+.+ .|+... +.--.|+|.|....++..|+..||+..+.+-.+.
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-QSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-CEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 47999999999999999999999999 7888876 455433 3345799999999999999999999888876554
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.56 E-value=0.00024 Score=59.44 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.+.+|||++||++++.++|.++|++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 46899999999999999999999999998888774221222334579999999999999999999988876443
No 128
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.00025 Score=57.84 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~ 107 (339)
..+.|||++||++++.++|.+++.+++.+..+.|-- .|. .|+|.|....++..|+..+++ ..+.+-.+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---~kG---faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---GKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---CCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 357899999999999999999999999999988752 344 699999999988888887763 556665543
No 129
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=0.00021 Score=57.14 Aligned_cols=72 Identities=10% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+|||.+||++++.++|.+++++++....+.|. |+. .+.--.|+|+|....++..|+. +++..+.+-.+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~--g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT--TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC--CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 35789999999999999999999999999888885 333 3444579999999988888876 777777765443
No 130
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.53 E-value=0.00016 Score=53.18 Aligned_cols=68 Identities=13% Similarity=0.275 Sum_probs=52.3
Q ss_pred eEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.|||.+||++++.++|.+++++++....+.+. |+. ..+.-..|+|.|....++..|+.. ++..+.+-.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-CSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 48999999999999999999999988888774 222 123334799999999888887753 666555533
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00032 Score=58.60 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=58.3
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..++..|||.+||..++.++|.++|.+++.+..+.+-+. ..| .|||.|....++..|+..||+..|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf--~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGI--QAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSE--EEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCC--EEEEEECCHHHHHHHHHHhCCCEecC
Confidence 355567889999999999999999999999999998541 233 69999999999999999999998876
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.52 E-value=5e-05 Score=59.32 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+|||.+||++++.++|.+++.+++......+-|+... +.-..|+|.|....++..|+. +|+..+.+-.+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 4679999999999999999999999875433222222211 112369999999999999987 999888775554
No 133
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.52 E-value=0.00023 Score=58.67 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=59.2
Q ss_pred cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--EEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccc----cc
Q psy4687 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--VAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI----RL 101 (339)
Q Consensus 29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~--lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~----~i 101 (339)
..--.+..|||++||++++.++|.+++.+++.... +-| -|+... +--..|+|.|... ++..++..||+. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg-~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQ-LNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSS-SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCC-CcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 33355679999999999999999999999988854 444 344322 2234799999999 999999999998 77
Q ss_pred cCcccc
Q psy4687 102 RDCELG 107 (339)
Q Consensus 102 ~d~el~ 107 (339)
.+-.+.
T Consensus 96 ~gr~l~ 101 (131)
T 2m2b_A 96 DGKTIN 101 (131)
T ss_dssp GGCCCC
T ss_pred CCEEEE
Confidence 775554
No 134
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.52 E-value=0.00013 Score=57.71 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCC--eeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSG--FLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI 99 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~G--F~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~ 99 (339)
.-.+|||++|||++|.++|.+++++++. ...+-| -||...+ ---.|+|.|....++..|+..||+.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-NRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-CSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-CceEeEEEECCHHHHHHHHHHhcCC
Confidence 3478999999999999999999999985 445554 3554322 1236999999999999999999875
No 135
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.51 E-value=0.00017 Score=57.71 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=55.7
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+.+|||.+||++++.++|.+++.+++....+.+- |+.. .+.-..|+|.|....++..|+..+ +..+.+-.+.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT-KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT-CCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC-CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 35789999999999999999999999999888874 3322 233347999999999888887765 4666665443
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.51 E-value=0.00025 Score=55.40 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=56.5
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
..++|||.+||++++.++|.+++++++....+.+- |+ ..+.-..|+|.|....++..|+. ++..+.+..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l 78 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence 45789999999999999999999999998888774 33 44566789999999999988876 5555555443
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.50 E-value=0.00017 Score=60.04 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=60.5
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+++|||++||++++.++|.+++++++....+.+---....+.-..|+|.|....++..|+..+++..+.+..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 357899999999999999999999999988888752111222334799999999999999888999888776654
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=0.00019 Score=57.43 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=58.3
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+.. ++..+.+-.+.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 34458999999999999999999999999888887743222223334899999999888888765 77777665544
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.00047 Score=54.47 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
.....|||++||++++.++|.++++.++.... +.|.-- ...+.-..|+|.|....++..|+.. ++..+.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 45689999999999999999999999988765 655422 3334445899999999988888765 6666655
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.46 E-value=8.2e-05 Score=56.96 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=57.0
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+|||.+||++++.++|.+++.++ +...+.+. ..| ..|+|.|....++..|+..||+..+.+-.+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNK---RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGG---TEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCC---cEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 5689999999999999999999999 88888872 333 4699999999999999999999888775543
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00036 Score=57.56 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=59.1
Q ss_pred eEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+|||++||++++.++|.+++++++....+.+- |+. .+.-..|+|.|....++..|+..+++..+.+..+.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN--NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC--CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 69999999999999999999999998888773 443 34567899999999999999989999888776554
No 142
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.44 E-value=9.7e-05 Score=58.20 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCeEEeeecCC------CCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC-cc
Q psy4687 34 TSSIFLRNLAP------TITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD-CE 105 (339)
Q Consensus 34 t~slfIk~IpP------~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d-~e 105 (339)
.++|||.+||+ +++.++|.+++.+++....+.|- |+... +--..|+|+|....++..|+..||+..+.+ -.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATG-KTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTT-EECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 46899999999 99999999999999998888773 33321 222479999999999999999999988887 55
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
+.
T Consensus 85 l~ 86 (100)
T 3ns6_A 85 LF 86 (100)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.41 E-value=0.00037 Score=63.38 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYS--GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~--GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
++++|||.+||++++.++|.+++++++ -...+.|- |+... +---.|+|+|....++..|+..||+..|.+-.+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-CEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 567899999999999999999999999 78888763 44332 3335799999999999999988999888775554
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.41 E-value=0.00037 Score=61.60 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=58.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
+.+++|||.+||++++.++|.+++++++-...+-|- |+... +--..|+|.|....++..|+..+++..+.+-.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-CccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 446789999999999999999999999988887763 55443 44568999999999999998888877665543
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.40 E-value=0.00046 Score=59.81 Aligned_cols=77 Identities=9% Similarity=0.145 Sum_probs=61.1
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..-..++|||++||++++.++|.+++++++....+.+- |+.. .+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT-MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC--CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC-CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 33345799999999999999999999999998888883 3322 23446899999999999999988999888775553
No 146
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.39 E-value=0.00053 Score=57.16 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..+..|||++||++++.++|.+++++++....+.+.-. +..+--..|+|.|....++..|+..||+..+.+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 45689999999999999999999999999888877422 222334579999999999999999999876654
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.38 E-value=0.00025 Score=60.00 Aligned_cols=77 Identities=12% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC--c
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD--C 104 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d--~ 104 (339)
-++...+-..|+|.|++..|+.++|.++|.+++.+..+.+-. ..++| .|+|.|....++..|+..||+..|.+ +
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gf--qAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQF--QALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEE--EEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCc--EEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 334445667888999999999999999999999999998853 12223 29999999999999999999998877 5
Q ss_pred ccc
Q psy4687 105 ELG 107 (339)
Q Consensus 105 el~ 107 (339)
.|.
T Consensus 97 ~Lr 99 (130)
T 3zzy_A 97 TLR 99 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.38 E-value=0.00055 Score=60.98 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCe--eEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGF--LRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF--~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
.+.+|||++||++++.++|.+++..++.. ..+.+-.-...+ ...|+|.|....++..|+..||+..|.+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~--~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSER--SSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSS--SEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCC--ceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 35679999999999999999999999998 777764322222 2689999999999999999999987765
No 149
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.37 E-value=0.00029 Score=57.49 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....|||.+||++++.++|.+++++++ -...+.+-.- ..|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rG---faFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDG---TGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSC---CEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCC---EEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 467999999999999999999999998 6777777311 2333 699999999999999999999888876654
No 150
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00045 Score=57.38 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~ 107 (339)
..+..|||++||++++.++|.++|..++....+.|-- .|. .|+|.|....++..|+..+++ ..+.+-.+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---~kG---~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---GKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---GGT---EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3467899999999999999999999999998888752 243 699999999988888887763 456654443
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.33 E-value=0.00032 Score=58.33 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEE------ecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVA------IADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~ls------LSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.+++|||.+||++++.++|.+++.+++....+. +-.+ ...+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 357899999999999999999999998765421 1001 122445689999999999999999999998887665
Q ss_pred cc
Q psy4687 107 GA 108 (339)
Q Consensus 107 ~~ 108 (339)
..
T Consensus 123 ~V 124 (143)
T 3egn_A 123 VV 124 (143)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 152
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.32 E-value=0.00056 Score=58.98 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=58.8
Q ss_pred CCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 34 TSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 34 t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.++|||++||+ +++.++|.+++++++....+.+--. .+. .|+|.|....++..|+..||+..+.+..+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKE---NALVQMADGNQAQLAMSHLNGHKLHGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--CSS---CCEEECTTTHHHHHHHHHHTTCCCSSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--CCC---EEEEEECCHHHHHHHHHHhCCCeecCeEEE
Confidence 57899999999 9999999999999999988887521 134 499999999999999988999888776554
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.00044 Score=57.14 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=55.6
Q ss_pred CCCCeEEeee--cCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687 32 HRTSSIFLRN--LAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL 101 (339)
Q Consensus 32 h~t~slfIk~--IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i 101 (339)
+.|..|||+| ||.+++.++|++++.+++-...+.+- +.|. -|+|+|....++.+|+..||+..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~---~~rg---faFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---PNKP---YSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC---TTCS---CEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe---CCCC---EEEEEECCHHHHHHHHHHhCCCEE
Confidence 3478899977 99999999999999999998888874 2455 599999999999999999999776
No 154
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.31 E-value=0.00038 Score=55.46 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+++|+|+||++.++.++|.++|.+++-...+-|-- .|. .|+|.|....++..|+..||+.++.+-.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kG---faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQG---IALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCc---EEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 478999999999999999999999999988888843 344 699999999999999999999888885554
No 155
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.30 E-value=0.00047 Score=55.99 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
....+|||++||.+++.++|.++++.++- ...+.|- |+. .+.--.|+|.|....++..|+. +|+..+.+-.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE--GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS--SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 45678999999999999999999999865 5555553 443 3445589999999999998887 8877766633
No 156
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.27 E-value=0.00061 Score=56.79 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=57.6
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCC-CCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPD-RRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC 104 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~-krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~ 104 (339)
..+|||++||++++.++|.+++++++-...+.+- |+... .+.-..|+|.|....++..|+..|++..+.+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 4689999999999999999999999888777663 33322 14557899999999999999989998776543
No 157
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.27 E-value=0.00034 Score=58.93 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=57.4
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+.+|||++||++++.++|.+++++++....+ ......+ ..|+|.|....++..|+..||+..+.+..+.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 167 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSK---GIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 167 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCC---SEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCc---eEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3467899999999999999999999998666555 2222333 3699999999999999999999888875543
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.25 E-value=0.00095 Score=59.60 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred cCCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 31 LHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 31 lh~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+++|||++||+ +++.++|.+++++++....+.+.- ..+. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~--~~~g---~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF--NKKE---NALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC--TTSC---CEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE--CCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 35568999999999 999999999999999998888852 1144 499999999999999988999888776554
No 159
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.33 E-value=4.5e-05 Score=61.29 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=58.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--------EEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--------VAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR 102 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~--------lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~ 102 (339)
..+.+|||.+||++++.++|.+++++++.... +.+. |+.. .+.-..|+|.|....++..|+..||+..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET-GKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 34678999999999999999999999987765 4442 2221 233347999999999999999889998887
Q ss_pred Ccccc
Q psy4687 103 DCELG 107 (339)
Q Consensus 103 d~el~ 107 (339)
+-.+.
T Consensus 84 g~~l~ 88 (116)
T 2lcw_A 84 GNPIK 88 (116)
Confidence 75554
No 160
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00065 Score=55.09 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.+..|||++||.+++.++|.++++.+ +...+.|- |+. .+.--.|+|.|....++.+|+ .+|+..+.+-.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~--g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV--GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT--CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC--CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 34799999999999999999999999 87777774 443 234458999999999998887 67776666533
No 161
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.00075 Score=54.86 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.....|||.+||++++.++|.+++..++.... +.+-+.. ..+.-..|+|.|....++..|+. +|+..+.+-.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 34579999999999999999999999876532 2222222 23445689999999999998887 88877766443
No 162
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.0015 Score=52.37 Aligned_cols=72 Identities=10% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCCCeEEeeecCCCCC-----------HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687 32 HRTSSIFLRNLAPTIT-----------KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR 100 (339)
Q Consensus 32 h~t~slfIk~IpP~is-----------r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~ 100 (339)
..+..|+|+|+..... .++|.++|.+++-...+.+-|+. .|. .|+|.|....++..|+..||+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~-~~G---~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH-PDG---VASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC-TTC---EEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC-CCE---EEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999944332 57999999999999999887665 345 49999999999999999999988
Q ss_pred ccCcccc
Q psy4687 101 LRDCELG 107 (339)
Q Consensus 101 i~d~el~ 107 (339)
+.+-.+.
T Consensus 89 ~~gr~l~ 95 (112)
T 2dit_A 89 FGGRQIT 95 (112)
T ss_dssp ETTEECE
T ss_pred ECCcEEE
Confidence 7765543
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.17 E-value=0.00093 Score=55.49 Aligned_cols=73 Identities=16% Similarity=0.363 Sum_probs=56.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.+.+|||++||++++.++|.+++++++....+.+.--....+.--.|+|.|....++..|+. +++..+.+-.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEE
Confidence 35689999999999999999999999998888875221222333479999999988888775 77777766444
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.12 E-value=0.00073 Score=67.29 Aligned_cols=75 Identities=7% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAI 109 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~ 109 (339)
+++|||.+||++|+-++|.++|.+++.+..+.|- |+.. .+.--.|+|+|....++..|+..||+..|.+-.|.+.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS-GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC-CCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4799999999999999999999999999888774 3322 2333479999999999999999999999888766543
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.12 E-value=0.0012 Score=58.84 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCCeEEeeecC-CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLA-PTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~Ip-P~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+++|||++|| ..++.++|.+++.+++....+-+- ...|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~--~~~~g---~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFM--KSKPG---AAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEEC--TTSTT---CEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEe--cCCCC---EEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 36789999999 699999999999999999999874 22334 599999999999999999999988876554
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.10 E-value=0.00092 Score=60.91 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=58.8
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Cccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el 106 (339)
.+++|||++||++++.++|.++|.+++....+.+- +.+ .-.|+|.|....++..|+..||+..+. +..+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~---~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe---cCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 45789999999999999999999999999998886 222 248999999999999999999998887 5333
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.10 E-value=0.0011 Score=60.39 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=61.2
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.....++|||.+||++++.++|.++++.++....+.+. ..| ..|+|.|....++..|+..+|+..+.+..+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~k---g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDR---GFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTT---TEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCC---cEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 34566899999999999999999999999998888884 223 4799999999999999988999888876654
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.09 E-value=0.0019 Score=53.92 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=54.1
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCee--EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFL--RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~--~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
...+..|||++||++++.++|.++++.+ |.. .+.|- |+. .+.--.|+|.|....++..|+.. ++..+.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~--GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE--GKITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS--SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC--CCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 3567889999999999999999999999 877 66664 444 23345799999999998888763 5555554
No 169
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.08 E-value=0.0013 Score=60.24 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=57.9
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.-..+++|||++||++++.++|.+++++++-...+.+. |+... -..|+|.|....++..|+ .+++..+.+-.+.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN---FRFARIEFARYDGALAAI-TKTHKVVGQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS---SEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC---cEEEEEEECCHHHHHHHH-HhCCcEeCCcEEE
Confidence 34557899999999999999999999999988888774 44333 379999999999988888 5888888776554
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.07 E-value=0.002 Score=58.77 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=61.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.....|||++||++++.++|.++++.++....+.+. |+.. .+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT-GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC-CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 456799999999999999999999999998888764 4433 23445799999999999999989999888776554
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.07 E-value=0.0015 Score=55.64 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=57.5
Q ss_pred cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.....+|||++||++++.++|.+++++++....+.+- |+... +.-..|+|.|....++..|+.. ++..+.+..+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-RSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-CccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3567899999999999999999999999988777764 44332 3445899999999888887754 6666666544
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.06 E-value=0.0014 Score=55.92 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=56.7
Q ss_pred CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
+.....+.+|||++||++++.++|.++|++++....+.+--.....+.-..|+|.|....++..|+.. ++..+.+..+.
T Consensus 98 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 33444568999999999999999999999999988887742222223445799999999888877754 56666664443
No 173
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0014 Score=54.79 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=54.0
Q ss_pred CcccCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecC-cccHHHHHHhhc
Q psy4687 28 PRALHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRR-DVDIKEICWNLN 97 (339)
Q Consensus 28 ~~~lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~-~~~~~~~~~~L~ 97 (339)
...+.+++.|+|.+++++ +||++|.+++++++...|+-+..=.. .|||.|.. ..++++++.++|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 456788999999999999 99999999999999999888853222 39999999 677777877785
No 174
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.04 E-value=0.0026 Score=54.74 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=58.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Ccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el~ 107 (339)
..+..|||++||++++.++|.+++.+++ ....+.+... .+ ..|+|.|....++..|+..||+..+. +..+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~---g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DR---KMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TS---SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CC---cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 3478899999999999999999999998 6788887421 13 37999999999999999999998887 54443
No 175
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.002 Score=50.99 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.....|||++||++++.++|.++++.++ -..+.| -|+ ..+.--.|+|.|....++..|+ .+|+..+.+-.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 83 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP--DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRY 83 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS--SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC--CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcE
Confidence 4457899999999999999999999987 446655 344 3344447999999999998888 46777666533
No 176
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.01 E-value=0.0013 Score=52.18 Aligned_cols=71 Identities=8% Similarity=0.003 Sum_probs=55.0
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
-...+|||++||++++.++|.++++.++- ...+.|. |+. .+.-..|+|.|....++..|+. +++..+.+-.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD--GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT--STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC--CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 35678999999999999999999999644 6666664 343 3344579999999999988887 7777666533
No 177
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.0015 Score=52.44 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCe-eEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGF-LRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF-~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
...+|||++||++++.++|.+++..++-. ..+.| -|+ ..+.-..|+|.|....++..|+.. |+..+.+-.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 35789999999999999999999999655 33444 444 233445799999999988888765 7777766444
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.98 E-value=0.0012 Score=60.25 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCCCeEEeeecCCCC-CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTI-TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~i-sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
..+.+|||++||+++ +.++|.++|..++....+.|--. +..+--..|+|.|....++..|+..||+..+.|..+.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 456889999999997 99999999999999888876421 2334557899999999999999999999988776554
No 179
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.97 E-value=0.001 Score=58.76 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=59.6
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+..|||++||++++.++|.+++.+++....+.| -|+... -..|+|.|....++..|+..||+..|.+-.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~---~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCC---ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 4568999999999999999999999999888776 333322 34799999999999999999999888875554
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.96 E-value=0.0016 Score=53.30 Aligned_cols=70 Identities=13% Similarity=0.309 Sum_probs=58.5
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
....+++|||.++ +++.++|.+++.+++....+.+. ..|. .|+|.|....++..|+..||+..+.+-.+.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg---~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRN---CAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTT---EEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCC---EEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3356789999994 79999999999999998888884 3444 599999999999999999999888776554
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.92 E-value=0.0016 Score=54.00 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=49.6
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHh
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWN 95 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~ 95 (339)
+++|||++||++++.++|.+++++++....+.+- |+... +--..|+|.|....++..|+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-RSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-SCCSCEEEEESSTHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-CccceEEEEEccHHHHHHHHhc
Confidence 5789999999999999999999999998888874 33322 2334799999999988887764
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.91 E-value=0.0015 Score=59.78 Aligned_cols=74 Identities=14% Similarity=0.253 Sum_probs=59.5
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...+|||++||++++.++|.++++.++ ....+.+--... .+.-..|+|.|....++..|+..|++..+.+..+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 578999999999999999999999999 888888742221 12335799999999999999998999888876654
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0011 Score=53.06 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCC--CCceEEEEEEecCcccHHHHHHhhc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPD--RRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~--krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
.+.+|||.+||++++.++|.+++.+++... +.+ -++... .+.-..|+|.|....++..|+..++
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 357899999999999999999999998887 443 333221 1223469999999999888887774
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.85 E-value=0.0013 Score=49.90 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=44.5
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHH
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIK 90 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~ 90 (339)
.+++|||.+||++++.++|.+++++++....+.+--. .|. .|+|.|....+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~ 56 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRA---FAFVTFADDQIAQ 56 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCS---CCEEECSCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCC---EEEEEECCHHHHH
Confidence 4689999999999999999999999999988888532 333 6999999887654
No 185
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.81 E-value=0.0031 Score=55.36 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=59.2
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceE-EEEEEecCcccHHHHHHhhccccccC--cccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR-RGWVTFRRDVDIKEICWNLNNIRLRD--CELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R-~GWV~f~~~~~~~~~~~~L~~~~i~d--~el~ 107 (339)
.+...|||.+||..|+.++|.++|.+++....+.+-+- + -| .|+|.|....++..|+..||+..|.+ +.|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----N-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----S-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 44567899999999999999999999999999998421 1 23 59999999999999999999998865 5554
No 186
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.78 E-value=0.0016 Score=54.97 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=55.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
-...+|||++||.+++.++|.++++.++- ...+.|. |+. .+.--.|+|.|....++..|+. +|+..+.+-.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~--g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE--GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS--SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 35678999999999999999999999975 4555443 554 3344479999999999998887 8887776643
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.75 E-value=0.0042 Score=55.37 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=57.7
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Ccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el~ 107 (339)
.+.+|||++||++++.++|.++|.+++ ....+.+-. . .+. .|+|.|....++..|+..||+..+. +..+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~-~~g---~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-K-DRK---MALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-S-STT---CEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-C-CCc---EEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 368899999999999999999999997 667777731 1 233 7999999999999999999998887 65443
No 188
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.75 E-value=0.0025 Score=53.13 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=53.9
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhhcC---C--------eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKRYS---G--------FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL 101 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~~~---G--------F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i 101 (339)
...+|||++||++++.++|.+++++++ | ...+.+. ..| ..|+|.|....++..|+ .+|+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~---g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDK---NFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTT---TEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCC---CEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 467999999999999999999999983 4 3444443 123 47999999999999888 8999888
Q ss_pred cCcccc
Q psy4687 102 RDCELG 107 (339)
Q Consensus 102 ~d~el~ 107 (339)
.+-.+.
T Consensus 76 ~g~~i~ 81 (172)
T 2g4b_A 76 QGQSLK 81 (172)
T ss_dssp TTEECE
T ss_pred cCceee
Confidence 776554
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.73 E-value=0.0034 Score=57.07 Aligned_cols=72 Identities=14% Similarity=0.314 Sum_probs=60.1
Q ss_pred CCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 33 RTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+.+|||++||++++.++|. +++++++....+.+-. ..+.-..|+|.|....++..|+..||+..+.+..+.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 47899999999999999977 8999999888888763 223345899999999999999999999888876554
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.64 E-value=0.0034 Score=48.41 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=44.5
Q ss_pred CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHH
Q psy4687 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIK 90 (339)
Q Consensus 27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~ 90 (339)
.+.+.+.+++|||.+||++++.++|.+++++++....+.|-- ..|. .|+|+|....++.
T Consensus 4 ~~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--~srG---faFV~F~~~~~A~ 62 (89)
T 3d2w_A 4 SHHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--PFRA---FAFVTFADDKVAQ 62 (89)
T ss_dssp -------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--SCCS---EEEEEESCHHHHH
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--CCCC---EEEEEECCHHHHH
Confidence 345567889999999999999999999999999998888752 2333 7999999887655
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.63 E-value=0.0041 Score=54.91 Aligned_cols=71 Identities=10% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
..+|||.+||++++.++|.+++++++....+.|--.. ..++--.|+|.|....++..|+..+ +..+.|-.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l 179 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDL 179 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEEC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEE
Confidence 3789999999999999999999999999988886433 2566679999999999888887544 445555443
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.54 E-value=0.0057 Score=52.09 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=53.2
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcC---C--------eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYS---G--------FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR 102 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~---G--------F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~ 102 (339)
..+|||++||++++.++|.+++++++ | ...+.+. ..| ..|+|.|....++..|+ .||+..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~---g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDK---NFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTT---TEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCC---CEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 57899999999999999999999983 3 3444443 223 36999999999999998 89988887
Q ss_pred Ccccc
Q psy4687 103 DCELG 107 (339)
Q Consensus 103 d~el~ 107 (339)
+..+.
T Consensus 77 g~~i~ 81 (198)
T 2yh0_A 77 GQSLK 81 (198)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 75543
No 193
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.48 E-value=0.0029 Score=53.55 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
-...+|||++||.+++.++|.++++.++ ...+.|- |+. .+.--.|+|.|....++..|+ .+|+..+.+-.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~--g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD--GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS--SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC--CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 3457899999999999999999999998 6677663 433 222236999999999988888 678777766443
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.39 E-value=0.0053 Score=55.86 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=56.7
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR 100 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~ 100 (339)
....+.+|||++||++++.++|.+++..++....+.+.-. +..+--..|+|.|....++..|+..||+..
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred ecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 3345789999999999999999999999999888877422 233445679999999999999998886533
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.18 E-value=0.0014 Score=55.13 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=53.8
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
...++|||++||++++.++|.+++.+++....+.+-|+... +.-..|+|.|....++..|+ .||+..+.+-.+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~-~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC-ccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 34689999999999999999999999853221222222211 12247999999999999888 5999888876554
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.0062 Score=50.38 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCe----eEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGF----LRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF----~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
..+..|||++||.+++.++|.++++.++.. ..+.|- |+ ..+.--.|+|.|....++..|+.. ++..+.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 345799999999999999999999999742 333332 33 334556899999999988888764 6555444
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.033 Score=47.54 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=59.9
Q ss_pred CeEEeeec----CCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEec-----Cccc---HHHHHH--hhccc
Q psy4687 35 SSIFLRNL----APTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFR-----RDVD---IKEICW--NLNNI 99 (339)
Q Consensus 35 ~slfIk~I----pP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~-----~~~~---~~~~~~--~L~~~ 99 (339)
++|||.++ |++++-++|.+++++++-...+.+ .||... +.-=.|+|.|. ++.+ +..|.. .+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg-~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSA-LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTC-CEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999999887776 889876 34458999998 4554 344444 57888
Q ss_pred cccCcccccccccc
Q psy4687 100 RLRDCELGAIVNRD 113 (339)
Q Consensus 100 ~i~d~el~~~v~r~ 113 (339)
+|.+..+...+|+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 88887766555443
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.48 E-value=0.018 Score=53.30 Aligned_cols=65 Identities=11% Similarity=0.270 Sum_probs=56.4
Q ss_pred cCCCCeEEeeecCCCC---------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687 31 LHRTSSIFLRNLAPTI---------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL 101 (339)
Q Consensus 31 lh~t~slfIk~IpP~i---------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i 101 (339)
.....+|||.+||+.+ +.++|.+++.+++-...+.+- +.|. .|+|+|....++..|+.+|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG---~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKN---CGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGT---EEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCC---EEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567899999999999 799999999999999888875 2455 599999999999999999998877
No 199
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.29 E-value=0.068 Score=42.64 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCeEEeeecCC-----CCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687 33 RTSSIFLRNLAP-----TITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106 (339)
Q Consensus 33 ~t~slfIk~IpP-----~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el 106 (339)
.+..|+|+|+.. +-..++|.+.|++++-...+.+. ||....+---.|+|.|....++..|+..||+..+.+-.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467899999962 22689999999999999999885 444322223479999999999999999999887766443
No 200
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.22 E-value=0.086 Score=41.85 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=52.4
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe--cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI--ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL--SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
+-|.||++||+++.+++.+.+.-.+-+.|..- ++......=+-+++|.|+...++.+....+++....|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 34789999999999999999999988777665 3322223445678999999988888777787655443
No 201
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.61 E-value=0.13 Score=41.27 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCCeEEeeecCCCCCHHH----HHHHHhhcCC-eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687 33 RTSSIFLRNLAPTITKAE----VENLCKRYSG-FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC 104 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~e----le~~ck~~~G-F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~ 104 (339)
..+.|+|+|||-.++..+ |.+++.+++| ...++ . --|||.|....++..|+..||+..+-+=
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 334489999999999766 6689999964 65552 1 5799999999999999999998777653
No 202
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=94.50 E-value=0.018 Score=33.69 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=22.6
Q ss_pred eecCCCCcccccChhhHHhhhhhcch
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.|.|+.|+|.|.....+..|+...|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcccCcccCChHHHHHHHHHHcc
Confidence 48899999999999999999766664
No 203
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.48 E-value=0.034 Score=40.43 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
.+...+..+..+..+..|.|+.|+|.|....-+.+|++..|+..
T Consensus 22 ~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 22 SLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence 44555554443334678999999999999999999999999864
No 204
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=94.47 E-value=0.021 Score=32.57 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.9
Q ss_pred ecCCCCcccccChhhHHhhhhhc
Q psy4687 306 WLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 306 ~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
|.|..|+|.|....-+..|++.-
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~~h 24 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQRVH 24 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred ccCCCCCCcCCCHHHHHHHHHHc
Confidence 78999999999999999998753
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.41 E-value=0.072 Score=51.69 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCeEEeee--cCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687 32 HRTSSIFLRN--LAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR 102 (339)
Q Consensus 32 h~t~slfIk~--IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~ 102 (339)
..|..|||.| ++..++.++|.+++.+++-...+.+- | .|. -|+|+|....++++|+..||+..+-
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~--~kg---faFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-P--NKP---YSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-T--TCS---EEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-C--CCC---EEEEEECCHHHHHHHHHHhCCCccc
Confidence 6688999999 57899999999999999999988884 3 454 7999999999999999999998773
No 206
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=94.41 E-value=0.015 Score=33.74 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.7
Q ss_pred eecCCCCcccccChhhHHhhhhhcchH
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.|.|+.|+|.|....-+..|+..-|++
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~ 28 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIKTKHSK 28 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred CccCCCCCCccCCHHHHHHHHHHHccC
Confidence 378999999999999999999876654
No 207
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.80 E-value=0.028 Score=34.08 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=24.8
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+-.|.|..|+|.|....-+..|+..-+.+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~ 33 (35)
T 2elx_A 5 SSGYVCALCLKKFVSSIRLRSHIREVHGA 33 (35)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred CCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence 45699999999999999999999875544
No 208
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=93.70 E-value=0.036 Score=34.24 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|.....+..|+..-
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred CCCCccCCCCCcccCcHHHHHHHHHHh
Confidence 355799999999999999999998763
No 209
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=93.64 E-value=0.027 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=23.0
Q ss_pred CeecCCCCcccccChhhHHhhhhhcch
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
..|.|..|+|.|....-+..|+..-++
T Consensus 2 k~~~C~~C~~~f~~~~~l~~H~~~h~~ 28 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSKMRHLETHDT 28 (30)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence 358999999999999999999876443
No 210
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=93.60 E-value=0.025 Score=32.73 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.0
Q ss_pred eecCCCCcccccChhhHHhhhhhcc
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.|.|+.|+|.|.....+..|+..-+
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHILLHE 26 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred CccCCCCCchhCCHHHHHHHHHHhc
Confidence 4889999999999999999997633
No 211
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=93.54 E-value=0.014 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=27.2
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
.+..|.|+.|+|.|....-+..|+...|+..
T Consensus 27 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp SSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence 3456999999999999999999999889754
No 212
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=93.51 E-value=0.027 Score=32.51 Aligned_cols=25 Identities=12% Similarity=0.522 Sum_probs=22.0
Q ss_pred eecCCCCcccccChhhHHhhhhhcc
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.|.|+.|+|.|....-+..|+..-+
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRHYRSHT 26 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred CeECCCCCcccCCHHHHHHHHHHhc
Confidence 4889999999999999999987643
No 213
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=93.36 E-value=0.043 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.3
Q ss_pred CeecCCCCcccccChhhHHhhhhh
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
-.|.|+.|+|.|....-+..|++.
T Consensus 2 k~~~C~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHH
T ss_pred cCccCCCcChhhCCHHHHHHHHHH
Confidence 358999999999999999999864
No 214
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=93.11 E-value=0.025 Score=32.39 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.2
Q ss_pred eecCCCCcccccChhhHHhhhhhcch
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.|.|+.|+|.|....-+..|+..-++
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 27 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHLKIHIA 27 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence 47899999999999999999876443
No 215
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=93.03 E-value=0.036 Score=37.58 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|++..|.+
T Consensus 26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 55 (57)
T 1bbo_A 26 DVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55 (57)
T ss_dssp SCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred CCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence 355699999999999999999999988765
No 216
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=93.02 E-value=0.035 Score=36.56 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=25.2
Q ss_pred ecCCCCcccccChhhHHhhhhhcchH
Q psy4687 306 WLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 306 ~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
|.||+|-|-|.+++-+..|-..+|++
T Consensus 6 FiCP~C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 6 FICPQCMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred cCCcHHHHHcCCHHHHHHHHHhcccc
Confidence 99999999999999999999999985
No 217
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=92.14 E-value=0.018 Score=33.59 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.3
Q ss_pred eecCCCCcccccChhhHHhhhhhcch
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.|.|+.|+|.|.....+..|+..-++
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~~ 27 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVRQHTG 27 (29)
Confidence 47899999999999999999875443
No 218
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.98 E-value=0.03 Score=34.63 Aligned_cols=29 Identities=31% Similarity=0.646 Sum_probs=24.8
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+-.|.|+.|+|.|....-+..|+..-+.+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~ 35 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIKSHIKTNHPE 35 (37)
T ss_dssp CCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred CCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence 45699999999999999999999875543
No 219
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=92.94 E-value=0.04 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred eecCCCCcccccChhhHHhhhhh
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.|.|+.|+|.|.....+..|+..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAHMRG 25 (27)
T ss_dssp TEEETTTTEEESCHHHHHHHHTT
T ss_pred CcCCCCCCcccCCHHHHHHHHHh
Confidence 58999999999999999999864
No 220
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.94 E-value=0.027 Score=35.30 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=23.8
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
+-.|.|..|+|.|....-+..|+...|.
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~ 34 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLKRHVIQKHS 34 (37)
T ss_dssp SCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred CcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence 4569999999999999999999555564
No 221
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=92.86 E-value=0.29 Score=38.83 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=55.4
Q ss_pred CCCeEEeeec--CCCC--------CHHHHHHHHhhcCCeeEEEecCCCCC--CCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687 33 RTSSIFLRNL--APTI--------TKAEVENLCKRYSGFLRVAIADPQPD--RRWFRRGWVTFRRDVDIKEICWNLNNIR 100 (339)
Q Consensus 33 ~t~slfIk~I--pP~i--------sr~ele~~ck~~~GF~~lsLSDP~p~--krf~R~GWV~f~~~~~~~~~~~~L~~~~ 100 (339)
.|..|.|+|+ |-.+ ..++|.+.|.+++-...+.+-.+... .+-.-.|+|.|....++..|+..||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899997 3333 34789999999999999999655422 1122378999999999999999999877
Q ss_pred ccCccc
Q psy4687 101 LRDCEL 106 (339)
Q Consensus 101 i~d~el 106 (339)
+.+-.+
T Consensus 84 f~GR~i 89 (105)
T 3v4m_A 84 FANRVV 89 (105)
T ss_dssp ETTEEC
T ss_pred eCCCEE
Confidence 766333
No 222
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=92.83 E-value=0.046 Score=38.31 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|++..|.
T Consensus 37 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp SCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence 45679999999999999999999998874
No 223
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=92.74 E-value=0.05 Score=42.02 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 288 AEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 288 eevek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
..+...++.++ .+-.|.|+.|+|.|.....+.+|++..|+.
T Consensus 42 ~~L~~H~~~H~---~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 42 GAQERHLRLLH---AAQVFPCKYCPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp HHHHHHHHTTS---CSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred HHHhhhhhhcc---CCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence 34566666544 345799999999999999999999999985
No 224
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=91.90 E-value=0.02 Score=33.30 Aligned_cols=27 Identities=19% Similarity=0.522 Sum_probs=23.1
Q ss_pred eecCCCCcccccChhhHHhhhhhcchH
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.|.|..|+|.|....-+..|+..-+++
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~ 29 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29 (30)
Confidence 489999999999999999998865443
No 225
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=92.69 E-value=0.06 Score=36.07 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+-.|.|..|+|.|....-+.+|++..|..
T Consensus 5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~ 33 (48)
T 3iuf_A 5 DKPYACDICGKRYKNRPGLSYHYAHSHLA 33 (48)
T ss_dssp TSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred CcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence 45699999999999999999999855643
No 226
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=92.65 E-value=0.037 Score=31.75 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.5
Q ss_pred eecCCCCcccccChhhHHhhhhhc
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.|.|+.|+|.|....-+..|+..-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHHh
Confidence 589999999999999999998763
No 227
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.61 E-value=0.045 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|+.|+|.|....-+..|++.-+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHT 33 (36)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred CCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence 3557999999999999999999987533
No 228
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=92.59 E-value=0.056 Score=32.88 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
+..|.|..|+|.|....-+..|+..-+
T Consensus 5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence 456999999999999999999987643
No 229
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.53 E-value=0.052 Score=33.15 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|+..-+
T Consensus 6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elr_A 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHT 33 (36)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred CCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence 3456999999999999999999987643
No 230
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.36 E-value=0.064 Score=32.90 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCeecCCCCcccccChhhHHhhhhh
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
+-.|.|..|+|.|.....+..|+..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 7 GLLYDCHICERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred CCCeECCCCCCccCCHHHHHHHHHH
Confidence 4569999999999999999999876
No 231
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=92.32 E-value=0.07 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.0
Q ss_pred eecCCCCcccccChhhHHhhhhh
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.|.|+.|+|.|....-+..|++.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHYRV 25 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHHTT
T ss_pred CccCCCCCcccCCHHHHHHHHHh
Confidence 58999999999999999999875
No 232
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.23 E-value=0.063 Score=34.05 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|.....+..|+..-+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGSLTLHERIHT 34 (41)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred CCCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence 3557999999999999999999987643
No 233
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.11 E-value=0.054 Score=33.07 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCeecCCCCcccccChhhHHhhhhhc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
+..|.|+.|+|.|....-+..|++.-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHc
Confidence 45699999999999999999998753
No 234
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=92.05 E-value=0.066 Score=38.84 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=25.9
Q ss_pred CeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
..|.|+.|+|.|....-+..|++..|+.
T Consensus 44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 71 (77)
T 2ct1_A 44 AKFHCPHCDTVIARKSDLGVHLRKQHSY 71 (77)
T ss_dssp SSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred CccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence 5799999999999999999999999974
No 235
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=92.03 E-value=0.046 Score=38.96 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
.+...+..+. .+..|.|+.|+|.|....-+..|++..|+++
T Consensus 24 ~L~~H~~~H~---~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~ 64 (70)
T 1x5w_A 24 ALRIHERIHC---TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64 (70)
T ss_dssp HHHHHHGGGC---CSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHcC---CCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence 3444444332 3456999999999999999999999888764
No 236
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.99 E-value=0.072 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=23.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|+.|+|.|....-+..|+..-+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elq_A 6 SGKPFKCSLCEYATRSKSNLKAHMNRHS 33 (36)
T ss_dssp CCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred CCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence 3456999999999999999999987643
No 237
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=91.96 E-value=0.062 Score=32.83 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.4
Q ss_pred eecCCCCcccccChhhHHhhhhhc
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.|.|+.|+|.|....-+..|+..-
T Consensus 2 p~~C~~C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred cccCCCCCchhCCHHHHHHHHHHh
Confidence 478999999999999999998753
No 238
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=91.89 E-value=0.14 Score=38.19 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=26.2
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+..|.|+.|+|.|....-+..|++..|+.
T Consensus 63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp CSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred CCceECCCccchhCCHHHHHHHHHHhcCC
Confidence 36799999999999999999999999864
No 239
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.88 E-value=0.072 Score=34.65 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2emi_A 9 GERHYECSECGKAFIQKSTLSMHQRIHRG 37 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHGGGCS
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHhHhCC
Confidence 35569999999999999999999876443
No 240
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.55 E-value=0.13 Score=41.50 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe--cCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI--ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR 102 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL--SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~ 102 (339)
|-+.-|.||.+||++|.+++.+.+.-.+...|.+. ++......=+-+++|.|....++.+-....++.-..
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45567899999999999999999888877655544 232223344567999999988888777777664443
No 241
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=91.33 E-value=0.097 Score=35.35 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=24.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+...|.
T Consensus 29 ~~~~~~C~~C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 29 GEKPYKCEFCEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence 34569999999999999999999988773
No 242
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.33 E-value=0.089 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2ytb_A 8 GEKPYRCDQCGKAFSQKGSLIVHIRVHT 35 (42)
T ss_dssp SCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred CCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence 3556999999999999999999987533
No 243
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.32 E-value=0.083 Score=33.81 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (44)
T 2en7_A 9 GMKPYVCNECGKAFRSKSYLIIHTRTH 35 (44)
T ss_dssp SSSSSCCTTTCCCCSSHHHHHHHHTTT
T ss_pred CCcCeECCCCCCccCCHHHHHHHhhhc
Confidence 345699999999999999999999653
No 244
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=91.31 E-value=0.088 Score=33.42 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 35 (42)
T 2el5_A 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35 (42)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGGGCC
T ss_pred CCCCccCCCcChhhCCHHHHHHHHHhcCC
Confidence 35569999999999999999999876443
No 245
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.25 E-value=0.094 Score=33.98 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|..|+|.|....-+..|+..-+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ep1_A 9 GEKPYECSDCGKSFIKKSQLHVHQRIHTG 37 (46)
T ss_dssp SCCSSCCSSSCCCCSSHHHHHHHHGGGSS
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHHhCC
Confidence 35569999999999999999999986443
No 246
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=91.23 E-value=0.084 Score=33.13 Aligned_cols=28 Identities=11% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
+..|.|..|+|.|....-+..|+..-+.
T Consensus 4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 31 (39)
T 1njq_A 4 PRSYTCSFCKREFRSAQALGGHMNVHRR 31 (39)
T ss_dssp SSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred CCceECCCCCcccCCHHHHHHHHHHcCC
Confidence 4569999999999999999999876443
No 247
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.22 E-value=0.091 Score=34.15 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emg_A 9 GENPFICSECGKVFTHKTNLIIHQKIHT 36 (46)
T ss_dssp SCCSCBCTTTCCBCSSHHHHHHHHTTTS
T ss_pred CCCCEECCccCcccCCHHHHHHHHHHhC
Confidence 3456999999999999999999987533
No 248
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.21 E-value=0.085 Score=34.19 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ytf_A 9 GEKPFECSECQKAFNTKSNLIVHQRTHTG 37 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHTSCS
T ss_pred CCCCcCCCCCCcccCCHHHHHHHHHHhCC
Confidence 35579999999999999999999876443
No 249
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=90.53 E-value=0.039 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.5
Q ss_pred eecCCCCcccccChhhHHhhhhh
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.|.|+.|+|.|....-+..|++.
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHIRH 24 (26)
Confidence 47899999999999999999864
No 250
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.16 E-value=0.069 Score=34.65 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|++.-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (45)
T 2epu_A 9 GQKPFECTHCGKSFRAKGNLVTHQRIHT 36 (45)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHTTTS
T ss_pred CCcCccCCCCCCccCChHHHHHHHHHhC
Confidence 3557999999999999999999987633
No 251
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.10 E-value=0.089 Score=34.10 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLTQHQRIHT 36 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHHcC
Confidence 3556999999999999999999987533
No 252
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.09 E-value=0.091 Score=34.14 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq1_A 9 GEKPYKCNECGKAFRAHSNLTTHQVIHT 36 (46)
T ss_dssp CSCCCCCTTTTCCCSSHHHHHHHHTTTC
T ss_pred CCCCeECCcCChhhCCHHHHHHHHHHhC
Confidence 3567999999999999999999987533
No 253
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.09 E-value=0.13 Score=33.36 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=24.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|++..|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 9 GKKPYECIECGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CCCSBCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred CCCCEECCccCchhCChHHHHHHhHhhcC
Confidence 34569999999999999999999984554
No 254
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.07 E-value=0.094 Score=33.37 Aligned_cols=29 Identities=14% Similarity=0.451 Sum_probs=24.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 36 (42)
T 2eos_A 8 GEKPYPCEICGTRFRHLQTLKSHLRIHTG 36 (42)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred CCCCEECCCCCCccCCHHHHHHHHHhcCC
Confidence 34569999999999999999999876443
No 255
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.04 E-value=0.089 Score=34.28 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|..|+|.|.....+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytp_A 9 GERHYECSECGKAFARKSTLIMHQRIHT 36 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCCeECCcCCcccCCHHHHHHHHHHhC
Confidence 3556999999999999999999987633
No 256
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.03 E-value=0.066 Score=34.92 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=24.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2eoz_A 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37 (46)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHHHHSS
T ss_pred CCCCeECcccChhhCCHHHHHHHHHHhCC
Confidence 35579999999999999999999876443
No 257
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=91.02 E-value=0.1 Score=33.92 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq2_A 9 GGKPYQCNECGKAFSQTSKLARHQRVHT 36 (46)
T ss_dssp SSCSSSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 3556999999999999999999987633
No 258
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.97 E-value=0.11 Score=33.91 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|++.-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enh_A 9 GEKPYECDVCRKAFSHHASLTQHQRVHS 36 (46)
T ss_dssp CSSSCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred CCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence 3456999999999999999999987643
No 259
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.91 E-value=0.11 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enf_A 9 GEKPYKCNECGKVFTQNSHLVRHRGIHT 36 (46)
T ss_dssp CCCSCBCSSSCCBCSSHHHHHHHHTTTT
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHhhC
Confidence 3556999999999999999999987533
No 260
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.89 E-value=0.12 Score=33.62 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yth_A 9 GEKPFQCEECGKRFTQNSHLHSHQRVHT 36 (46)
T ss_dssp CSSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred CCcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence 3556999999999999999999987633
No 261
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.88 E-value=0.1 Score=33.94 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep3_A 9 GEKPYRCAECGKAFTDRSNLFTHQKIHT 36 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHTTTT
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence 3556999999999999999999997633
No 262
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=90.88 E-value=0.14 Score=39.16 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCeecCCCCccccc---ChhhHHhhhhhcchHHHHHhhc
Q psy4687 303 TDKWLCPLSGKKFK---GPDFIRKHIFNKHAEKVEEVKK 338 (339)
Q Consensus 303 e~K~rC~~C~KlFk---~~eFV~KHI~nKH~e~v~~v~~ 338 (339)
+.+-.|++|+|.++ +-.=++.|++.+||+.+.++.+
T Consensus 27 ~~~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~~e~~~~~~ 65 (73)
T 2ct5_A 27 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVK 65 (73)
T ss_dssp SSCCEETTTTEECCCCSSTHHHHHHHHHSCHHHHHHHCC
T ss_pred CCEEECCCCCccccCCCChHhHHHHHHHHCHHHHHHHHH
Confidence 36889999999976 3455889999999999887643
No 263
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.87 E-value=0.091 Score=34.32 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|..|+|.|....-+..|++.-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eom_A 9 GERGHRCSDCGKFFLQASNFIQHRRIHT 36 (46)
T ss_dssp CCSSCCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred CCCCcCCCCCCCeeCChHHHHHHHHHhC
Confidence 3557999999999999999999987643
No 264
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.86 E-value=0.1 Score=33.99 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|++.-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emf_A 9 GGKHFECTECGKAFTRKSTLSMHQKIHT 36 (46)
T ss_dssp SSCCEECSSSCCEESCHHHHHHHGGGTS
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHhC
Confidence 3456999999999999999999997643
No 265
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=90.81 E-value=0.093 Score=33.23 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~ 35 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLAVHQRSCS 35 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTT
T ss_pred CCCCeECCCCCcccCCHHHHHHHhhhcC
Confidence 3456999999999999999999987543
No 266
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.79 E-value=0.11 Score=33.65 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2epz_A 9 GEKPFDCIDCGKAFSDHIGLNQHRRIHT 36 (46)
T ss_dssp CCCSBCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHhC
Confidence 3557999999999999999999987543
No 267
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.77 E-value=0.11 Score=33.40 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=24.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|..|+|.|.....+..|+..-+.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 35 (43)
T 2yrm_A 7 GNGAFFCNECDCRFSEEASLKRHTLQTHS 35 (43)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHHHHHHTC
T ss_pred CCCCEECCCCCCeeCChHHHHHHHHhhCC
Confidence 34569999999999999999999876443
No 268
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.76 E-value=0.12 Score=33.53 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=23.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eop_A 9 GEKPHECRECGKSFSFNSQLIVHQRIH 35 (46)
T ss_dssp CCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred CCCCeeCCCCCchhCCHHHHHHHHHHc
Confidence 355799999999999999999998763
No 269
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.66 E-value=0.11 Score=33.98 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eon_A 9 GEKPYKCQVCGKAFRVSSHLVQHHSVH 35 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHTTTT
T ss_pred CCcccCCCCCCcccCcHHHHHHHHHhc
Confidence 355799999999999999999998753
No 270
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.65 E-value=0.11 Score=33.50 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|..|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (44)
T 2epv_A 9 GEKPYECNECGKAFIWKSLLIVHERTHA 36 (44)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred CCcCeECCCCCcccCchHHHHHHHhHhc
Confidence 3456999999999999999999987633
No 271
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.64 E-value=0.11 Score=33.69 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-++
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2eml_A 9 GEKPYECSVCGKAFSHRQSLSVHQRIHSG 37 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGGGSS
T ss_pred CCCCeeCCCcCCccCCHHHHHHHHHHhcC
Confidence 35679999999999999999999876433
No 272
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.63 E-value=0.097 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|..|+|.|.....+..|+..-
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 33 (44)
T 2emx_A 7 GEKPFGCSCCEKAFSSKSYLLVHQQTH 33 (44)
T ss_dssp SCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCcCccCCCCCcccCCHHHHHHHHHHh
Confidence 355799999999999999999998763
No 273
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.61 E-value=0.11 Score=33.66 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-++
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2eq4_A 9 GEKLYNCKECGKSFSRAPCLLKHERLHSG 37 (46)
T ss_dssp CCCCCCBTTTTBCCSCHHHHHHHHHHCCS
T ss_pred CCCCeECCCCCCccCchHHHHHHHHhcCC
Confidence 35569999999999999999999876433
No 274
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=90.57 E-value=0.11 Score=33.56 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|.....+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2el4_A 9 GVKPYGCSQCAKTFSLKSQLIVHQRSHT 36 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHGGGSS
T ss_pred CCCceECCCCCchhCCHHHHHHHHHHhC
Confidence 3556999999999999999999987643
No 275
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.57 E-value=0.11 Score=33.57 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2yts_A 9 GEKPYICNECGKSFIQKSHLNRHRRIH 35 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHGGGT
T ss_pred CCcCEECCCCChhhCChHHHHHHHHhc
Confidence 355799999999999999999998753
No 276
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.57 E-value=0.11 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytq_A 9 GEKPYGCSECGKAFSSKSYLIIHMRTHS 36 (46)
T ss_dssp CCCSCBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred CCCCcCCCccChhhCChHHHHHHHHHhC
Confidence 3556999999999999999999987633
No 277
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.54 E-value=0.12 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDLYTHHMVHT 36 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHGGGGT
T ss_pred CCcCccCCCccchhCCHHHHHHHHHHhC
Confidence 3557999999999999999999987643
No 278
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.53 E-value=0.1 Score=33.98 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2em5_A 9 STKSHQCHECGRGFTLKSHLNQHQRI 34 (46)
T ss_dssp CSCSEECSSSCCEESSHHHHHHHHTT
T ss_pred CCCCeECCcCCCccCCHHHHHHHHHH
Confidence 35569999999999999999999876
No 279
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.52 E-value=0.11 Score=33.69 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytr_A 9 GEKPYKCNECGKAFSQTSKLARHQRIHT 36 (46)
T ss_dssp SCCTTCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence 3556999999999999999999987633
No 280
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.50 E-value=0.1 Score=33.88 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ene_A 9 GEKPYKCNECGKVFRHNSYLSRHQRIH 35 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHTTT
T ss_pred CCCCeECCCCCchhCChHHHHHHHhhc
Confidence 355799999999999999999998763
No 281
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.49 E-value=0.096 Score=34.04 Aligned_cols=28 Identities=14% Similarity=0.333 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2em3_A 9 GEKPYECKVCSKAFTQKAHLAQHQKTHT 36 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHhC
Confidence 3567999999999999999999997633
No 282
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.49 E-value=0.13 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|++.-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2elz_A 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHM 36 (46)
T ss_dssp CCSSCBCSSSCCBCSSHHHHHHHGGGGG
T ss_pred CCCCeeCcccCchhCCHHHHHHHHHhcC
Confidence 3567999999999999999999987533
No 283
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.46 E-value=0.12 Score=33.11 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eof_A 9 GEKPYECNECQKAFNTKSNLMVHQRTHT 36 (44)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred CCCCeECCCCCcccCCHhHHHHHHHHhC
Confidence 3556999999999999999999987633
No 284
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.45 E-value=0.083 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq3_A 9 GEKPYECNQCGKAFSVRSSLTTHQAIHT 36 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHTTSC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHHHhC
Confidence 3556999999999999999999987643
No 285
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.45 E-value=0.13 Score=33.35 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytn_A 9 GKKPYKCNECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred CCcCeECCCCCCeeCCHHHHHHHhhhcC
Confidence 3566999999999999999999987643
No 286
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.44 E-value=0.11 Score=33.81 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|..|+|.|.....+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2en9_A 9 GKKLFKCNECKKTFTQSSSLTVHQRIH 35 (46)
T ss_dssp SSCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred CCCCEECCccCcccCCHHHHHHHHHHc
Confidence 355699999999999999999998753
No 287
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.44 E-value=0.1 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eow_A 9 GEKPYKCNECGKAFRARSSLAIHQATHS 36 (46)
T ss_dssp CCCCEECTTSCCEESSHHHHHHHHHHHC
T ss_pred CCCCeeccccCChhcCHHHHHHHHHHcC
Confidence 3556999999999999999999987533
No 288
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.38 E-value=0.15 Score=39.27 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCeecCCCCccccc-------ChhhHHhhhhhcchHHHHHh
Q psy4687 303 TDKWLCPLSGKKFK-------GPDFIRKHIFNKHAEKVEEV 336 (339)
Q Consensus 303 e~K~rC~~C~KlFk-------~~eFV~KHI~nKH~e~v~~v 336 (339)
..+-.|++|+|.|. |-.=++.||+.+|++.++..
T Consensus 26 ~~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e~~~~ 66 (76)
T 2djr_A 26 NQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKS 66 (76)
T ss_dssp CSCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHHHHHT
T ss_pred CCEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHHHHHhc
Confidence 45889999999998 56789999999999998763
No 289
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=90.38 E-value=0.14 Score=33.26 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2em0_A 9 GEKTWKCRECDMCFSQASSLRLHQNVH 35 (46)
T ss_dssp CCCCCCCSSSCCCCSSHHHHHHHGGGG
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHc
Confidence 355699999999999999999998763
No 290
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=90.32 E-value=0.11 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emk_A 9 GEKPYECKECGKAFSQTTHLIQHQRVH 35 (46)
T ss_dssp SSCSCBCSSSCCBCSCHHHHHHHHHHH
T ss_pred CCCceECCCCCchhCCHHHHHHHHHHc
Confidence 345699999999999999999999763
No 291
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.31 E-value=0.12 Score=32.59 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCeecCCCCcccccChhhHHhhhhhc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
+..|.|+.|+|.|....-+..|+..-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H 33 (42)
T 2yte_A 8 EKPYSCAECKETFSDNNRLVQHQKMH 33 (42)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHh
Confidence 45699999999999999999998763
No 292
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=90.24 E-value=0.11 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQLATHQRIH 35 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHh
Confidence 355699999999999999999998763
No 293
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=90.23 E-value=0.13 Score=33.28 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em9_A 9 GEKPYNCKECGKSFRWASCLLKHQRVH 35 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHGGGG
T ss_pred CCcCeECCccccccCChHHHHHHHHHh
Confidence 356799999999999999999998763
No 294
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.22 E-value=0.11 Score=33.87 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|.....+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em4_A 9 GQRPYECIECGKAFKTKSSLICHRRSHT 36 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence 3456999999999999999999987543
No 295
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.22 E-value=0.12 Score=33.68 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
+..|.|+.|+|.|.....+..|++.-+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoh_A 10 KKPYECKECRKTFIQIGHLNQHKRVHT 36 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHHHHHHCS
T ss_pred CCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence 456999999999999999999987633
No 296
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.21 E-value=0.13 Score=33.42 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em6_A 9 GEKCYKCDVCGKEFSQSSHLQTHQRVH 35 (46)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHc
Confidence 355699999999999999999998653
No 297
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=90.20 E-value=0.12 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ema_A 9 GEKRYKCNECGKVFSRNSQLSQHQKIHT 36 (46)
T ss_dssp TSCCEECSSSCCEESSHHHHHHHHTGGG
T ss_pred CCcCcCCCCCcchhCCHHHHHHHHHhcC
Confidence 3557999999999999999999987633
No 298
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.19 E-value=0.12 Score=33.50 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eov_A 9 GEKPYKCSDCGKSFTWKSRLRIHQKCHT 36 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred CCCCccCCccChhhCCHHHHHHHHHhcC
Confidence 3456999999999999999999986533
No 299
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.16 E-value=0.11 Score=33.66 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytj_A 9 GEKPYICAECGKAFTIRSNLIKHQKIH 35 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred CCcCeECCCCChhhCCHHHHHHHHHHc
Confidence 355699999999999999999998753
No 300
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.16 E-value=0.12 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+-.|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eq0_A 9 GEKPYKCHECGKVFRRNSHLARHQLIHT 36 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHTTTC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence 3567999999999999999999987633
No 301
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.13 E-value=0.11 Score=33.69 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|.....+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2emm_A 9 GERPHKCNECGKSFIQSAHLIQHQRIH 35 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred CCCCeeCCCCChhhCCHHHHHHHHHHh
Confidence 355799999999999999999998763
No 302
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.10 E-value=0.13 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eme_A 9 GEKPYVCDYCGKAFGLSAELVRHQRIHT 36 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHHhcC
Confidence 3556999999999999999999997533
No 303
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.10 E-value=0.14 Score=32.93 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|.....+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (44)
T 2emb_A 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35 (44)
T ss_dssp CCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHHc
Confidence 345699999999999999999999753
No 304
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.07 E-value=0.12 Score=33.50 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytg_A 9 GEKPFKCGECGKSYNQRVHLTQHQRVHT 36 (46)
T ss_dssp SCCSEECTTTCCEESSSHHHHTTGGGGS
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 3567999999999999999999987543
No 305
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=90.03 E-value=0.14 Score=33.35 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHT 36 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 3556999999999999999999987643
No 306
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=90.01 E-value=0.082 Score=34.04 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|..|+|.|.....+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (44)
T 2eox_A 9 DSKSYNCNECGKAFTRIFHLTRHQKIHT 36 (44)
T ss_dssp CCCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred CCCCeECcccCcccCCHHHHHHHHHHhC
Confidence 3556999999999999999999987643
No 307
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.00 E-value=0.11 Score=32.08 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=22.0
Q ss_pred CCeecCCCCcccccCh-hhHHhhhhh
Q psy4687 303 TDKWLCPLSGKKFKGP-DFIRKHIFN 327 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~-eFV~KHI~n 327 (339)
+-.|.|+.|+|.|... .-+..|+..
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~H~~~ 32 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQRHIWA 32 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHHHHHh
Confidence 4569999999999999 999999865
No 308
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.98 E-value=0.13 Score=33.13 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|..|+|.|....-+..|++.-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 35 (44)
T 2eou_A 9 AKTTSECQECGKIFRHSSLLIEHQALH 35 (44)
T ss_dssp SSCCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHH
Confidence 355799999999999999999998763
No 309
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.98 E-value=0.11 Score=33.74 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yto_A 9 GEKPYKCSDCGKAFTRKSGLHIHQQS 34 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCEECcccCCccCCHhHHHHHHHH
Confidence 35569999999999999999999876
No 310
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.96 E-value=0.13 Score=33.43 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ep0_A 9 GEKPYKCDVCHKSFRYGSSLTVHQRIH 35 (46)
T ss_dssp TCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred CCCCeeCcccCcccCChHHHHHHHHHh
Confidence 456799999999999999999998753
No 311
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=89.93 E-value=0.42 Score=38.96 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=54.5
Q ss_pred CCCeEEeeecCCC--C---CHHHHHHHHhhcCCeeEEEecCCCCC----CCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687 33 RTSSIFLRNLAPT--I---TKAEVENLCKRYSGFLRVAIADPQPD----RRWFRRGWVTFRRDVDIKEICWNLNNIRLRD 103 (339)
Q Consensus 33 ~t~slfIk~IpP~--i---sr~ele~~ck~~~GF~~lsLSDP~p~----krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d 103 (339)
.|..|+|+|+--. + -.++|.+.|.+++....+.+-.+... .+---.|+|.|....++..|+..||+..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4778999998421 1 26889999999999999988655432 1122468999999999999999999877665
Q ss_pred cc
Q psy4687 104 CE 105 (339)
Q Consensus 104 ~e 105 (339)
-.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 33
No 312
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.92 E-value=0.1 Score=33.81 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|..|+|.|....-+..|+..
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2eor_A 9 GEKPYNCEECGKAFIHDSQLQEHQRI 34 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCcCccCCCCCCCcCCHHHHHHHHHh
Confidence 35569999999999999999999875
No 313
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.89 E-value=0.11 Score=33.91 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|++.-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytt_A 9 GEKPYQCSECGKSFSGSYRLTQHWITH 35 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHTHH
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHHHc
Confidence 355699999999999999999998763
No 314
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.86 E-value=0.13 Score=33.45 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emy_A 9 GENPYECHECGKAFSRKYQLISHQRTHA 36 (46)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred CCcCcCCCCCCcccCcHHHHHHHHHHcC
Confidence 3456999999999999999999987633
No 315
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.83 E-value=0.1 Score=33.84 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|..|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2emh_A 9 GERPYICTVCGKAFTDRSNLIKHQKI 34 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHh
Confidence 35569999999999999999999875
No 316
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.81 E-value=0.12 Score=33.13 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (44)
T 2yu5_A 9 GENPFKCSKCDRVFTQRNYLVQHERTHAR 37 (44)
T ss_dssp CCCSEECSSSSCEESSSHHHHHHHHHCCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHhHhcCC
Confidence 35579999999999999999999876443
No 317
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.79 E-value=0.12 Score=33.48 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2yti_A 9 GEKPYKCNECGKVFTQNSHLARHRGIH 35 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHTTT
T ss_pred CCcCeECCCCCcccCChhHHHHHhHhc
Confidence 355699999999999999999998653
No 318
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.78 E-value=0.09 Score=40.36 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
.+...+..+.. .+..|.|..|+|.|....-+..|++..|.++
T Consensus 40 ~L~~H~~~h~~--~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 40 GLKKHMEVCQK--LQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp HHHHHHHHHHH--HHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHcC--CCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence 34444444332 1346899999999999999999999888764
No 319
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.72 E-value=0.11 Score=33.31 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
+..|.|+.|+|.|....-+..|+..-+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36 (44)
T ss_dssp CCSCEETTTTEECSSHHHHHHHHTTSS
T ss_pred CcCeeCCCCCCccCCHHHHHHHHHHcC
Confidence 456999999999999999999987633
No 320
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.70 E-value=0.1 Score=33.83 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2emp_A 9 GVKPYMCNECGKAFSVYSSLTTHQVI 34 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHHHH
T ss_pred CCcCeECCCCCchhCCHHHHHHHHHH
Confidence 35569999999999999999999875
No 321
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.68 E-value=0.12 Score=33.46 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytk_A 9 GEKPYKCNECGKVFTQNSHLTNHWRIHT 36 (46)
T ss_dssp SSCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred CCCCEeCCcCCCccCCHHHHHHHHHHHC
Confidence 3567999999999999999999987533
No 322
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=89.68 E-value=0.13 Score=37.16 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=26.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+...|.+
T Consensus 12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~ 41 (77)
T 2ct1_A 12 GEKPYECYICHARFTQSGTMKMHILQKHTE 41 (77)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred CCCCeECCCcCchhCCHHHHHHHHHHhcCC
Confidence 355699999999999999999999988864
No 323
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.64 E-value=0.13 Score=33.44 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|..|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2eoo_A 9 GERPYGCNECGKNFGRHSHLIEHLKR 34 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCEEccccCcccCCHHHHHHHHHH
Confidence 35569999999999999999999876
No 324
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.51 E-value=0.11 Score=33.80 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en6_A 9 GEKPYGCNECGKTFSQKSILSAHQRTHT 36 (46)
T ss_dssp SSCCEEETTTTEEESSHHHHHHHHHHHS
T ss_pred CCcCeECCCCCcccCchHHHHHHHHHcC
Confidence 3557999999999999999999987633
No 325
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.49 E-value=0.14 Score=33.20 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eoq_A 9 GEKPFKCDICGKSFCGRSRLNRHSMVH 35 (46)
T ss_dssp SSCSCCCSSSCCCCSSHHHHHHHHHHT
T ss_pred CCCCcCCCcCCchhCCHHHHHHHHHHc
Confidence 355799999999999999999998763
No 326
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=89.47 E-value=0.17 Score=35.23 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=25.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+...|
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~H~~~~H 34 (66)
T 2drp_A 7 GEHTYRCKVCSRVYTHISNFCRHYVTSH 34 (66)
T ss_dssp ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred CCcceECCCCcchhCCHHHHHHHHHHHc
Confidence 4678999999999999999999999877
No 327
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.39 E-value=0.16 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|.....+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYLTQHERIH 35 (46)
T ss_dssp CSCCEECSSSCCEESSSHHHHHHHTTC
T ss_pred CCCCEECcCCCCcCCCHHHHHHHHHHc
Confidence 345699999999999999999998653
No 328
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=89.31 E-value=0.16 Score=34.49 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 21 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 49 (54)
T 1yui_A 21 SEQPATCPICYAVIRQSRNLRRHLELRHF 49 (54)
T ss_dssp SSCCEECTTTCCEESSHHHHHHHHHHHTT
T ss_pred CCCCccCCCCCcccCCHHHHHHHHHHhcc
Confidence 35569999999999999999999876443
No 329
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=89.29 E-value=0.11 Score=35.06 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
+..|.|+.|+|.|.....+..|+..-+
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 28 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLNIHLRTHT 28 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHHHHHHHHH
T ss_pred CCCccCCCCcchhCChHHHHHHHHHcC
Confidence 356999999999999999999998633
No 330
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.25 E-value=0.14 Score=33.33 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em2_A 9 GEKPFKCKECGKAFRQNIHLASHLRIH 35 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred CCCCEECCcCCchhCCHHHHHHHHHHh
Confidence 355699999999999999999998763
No 331
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.24 E-value=0.14 Score=33.23 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en1_A 9 GEKPFKCEECGKRFTQNSQLHSHQRVHT 36 (46)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGGS
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence 3556999999999999999999987633
No 332
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.21 E-value=0.16 Score=32.85 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en8_A 9 GEKSHTCDECGKNFCYISALRIHQRVHM 36 (46)
T ss_dssp CCSSEECTTTCCEESSHHHHHHHHTTTC
T ss_pred CCCCeECCCcCcccCCHHHHHHHHHHhC
Confidence 3556999999999999999999986533
No 333
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.17 E-value=0.16 Score=32.95 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep2_A 9 GEKPYECSICGKSFTKKSQLHVHQQIHT 36 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHTTS
T ss_pred CCcCcCCCCCCcccCCHHHHHHHHHHhC
Confidence 3556999999999999999999987533
No 334
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.15 E-value=0.57 Score=37.96 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCCeEEeeecCCCC----------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687 33 RTSSIFLRNLAPTI----------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR 102 (339)
Q Consensus 33 ~t~slfIk~IpP~i----------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~ 102 (339)
.|..|.|+|+=-.- -.++|.+.|.+++....+.+-.+. .+.| |+|.|....++..|+..||+..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~---~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGN---VYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCC---EEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEE---EEEEECCHHHHHHHHHHhCCCEEC
Confidence 46677777764322 245778899999999999995443 3554 999999999999999999987776
Q ss_pred Cccc
Q psy4687 103 DCEL 106 (339)
Q Consensus 103 d~el 106 (339)
+-.+
T Consensus 82 GR~i 85 (114)
T 3s6e_A 82 GKMI 85 (114)
T ss_dssp TEEC
T ss_pred CEEE
Confidence 6443
No 335
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.11 E-value=0.13 Score=33.40 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=24.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ysp_A 9 GEKPYKCEKCGKGYNSKFNLDMHQKVHT 36 (46)
T ss_dssp SCCSEEETTTTEEESCHHHHHHHHTTSC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHhhC
Confidence 4567999999999999999999987633
No 336
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=89.08 E-value=0.14 Score=33.24 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|..|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2en3_A 9 GEKPFQCKECGMNFSWSCSLFKHLRS 34 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHH
T ss_pred CCCCeeCcccChhhCCHHHHHHHHHH
Confidence 34569999999999999999999865
No 337
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=89.03 E-value=0.21 Score=33.95 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=24.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|++..|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~ 37 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHT 37 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcC
Confidence 34569999999999999999999986664
No 338
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=89.01 E-value=0.16 Score=32.99 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|++.-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ely_A 9 GEKPFKCVECGKGFSRRSALNVHHKLH 35 (46)
T ss_dssp CCCSBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred CCCCcccCccCcccCCHHHHHHHHHHc
Confidence 355799999999999999999998763
No 339
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.98 E-value=0.13 Score=33.51 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+-.|.|+.|+|.|....-+..|++.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ytm_A 9 GEKPYKCMECGKAFGDNSSCTQHQRL 34 (46)
T ss_dssp SCCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHH
Confidence 35579999999999999999999876
No 340
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=88.97 E-value=0.14 Score=36.70 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+...++.+. .+..|.|+.|+|.|....-+..|++.-+++
T Consensus 32 ~l~~H~~~H~---~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~ 71 (74)
T 2lce_A 32 NLASHKTVHT---GEKPYRCNICGAQFNRPANLKTHTRIHSGE 71 (74)
T ss_dssp HHHHHHHHHC---CCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcC---CCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence 3444444332 345699999999999999999998765543
No 341
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.96 E-value=0.16 Score=32.97 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|..|+|.|....-+..|+..-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2yso_A 9 REKSHQCRECGEIFFQYVSLIEHQVLH 35 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred CCCCEEccccChhhCCHHHHHHHHHHh
Confidence 345699999999999999999998763
No 342
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=88.90 E-value=0.049 Score=32.98 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.7
Q ss_pred eecCCCCcccccChhhHHhhhhh
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.|.|+.|+|.|.....+..|+..
T Consensus 2 p~~C~~C~k~f~~~~~L~~H~~~ 24 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKHIKT 24 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred CCCCCCCCcccCCHHHHHHHHHH
Confidence 37899999999999999999865
No 343
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.90 E-value=0.18 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+-.|.|+.|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2emz_A 9 GERPFKCNECGKGFGRRSHLAGHLRL 34 (46)
T ss_dssp CCCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHH
Confidence 35569999999999999999999875
No 344
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.83 E-value=0.18 Score=39.12 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+...+..+. .+..|.|+.|+|.|....-+.+|+...|+.
T Consensus 81 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 81 ELRLHMVSHT---GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp HHHHHHHHHS---SSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred HHHHHHHHcC---CCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence 4444444332 345699999999999999999999999975
No 345
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.77 E-value=0.17 Score=32.74 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=23.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2epw_A 9 GEKPCKCTECGKAFCWKSQLIMHQRTH 35 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHHC
T ss_pred CCCCeeCCCCCCccCCHHHHHHHHHHh
Confidence 345699999999999999999998763
No 346
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.77 E-value=0.15 Score=33.00 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=23.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eoe_A 9 GEKPYKCNECGKVFTQNSHLANHQRIHT 36 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHGGGS
T ss_pred CCCCeECCCcChhhCCHHHHHHHHHHcC
Confidence 3557999999999999999999987533
No 347
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=88.75 E-value=0.12 Score=33.43 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=24.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+-.|.|+.|+|.|....-+..|++.-+.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~ 35 (45)
T 2epq_A 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35 (45)
T ss_dssp SCCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred CCCCCcCCCCCcccCCHHHHHHHHHHccC
Confidence 45579999999999999999999876443
No 348
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=88.74 E-value=0.15 Score=36.49 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+...++.+. .+..|.|+.|+|.|....-+..|++.-+
T Consensus 29 ~L~~H~~~h~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 66 (72)
T 1x6e_A 29 ILVQHQRVHT---GEKPYKCLECGKAFSQNSGLINHQRIHT 66 (72)
T ss_dssp HHHHHHHGGG---CSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence 3444444332 3456999999999999999999987644
No 349
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=88.62 E-value=0.22 Score=29.40 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred eecCC--CCcccccChhhHHhhhhhc
Q psy4687 305 KWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 305 K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
.|.|. .|+|.|....-+..|+..-
T Consensus 3 ~~~C~~~~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp SBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred CCcCcCCCCCCccCCHHHHHHHHHHc
Confidence 58998 8999999999999998763
No 350
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=88.56 E-value=0.19 Score=29.60 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=21.7
Q ss_pred eecCC--CCcccccChhhHHhhhhhcc
Q psy4687 305 KWLCP--LSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 305 K~rC~--~C~KlFk~~eFV~KHI~nKH 329 (339)
.|.|+ .|+|.|....-+..|+..-.
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~~H~ 28 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKRTHT 28 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred CcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence 47897 99999999999999997643
No 351
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.40 E-value=0.14 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+-.|.|+.|+|.|....-+..|+..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 33 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAHLRAHVLI 33 (42)
T ss_dssp SSCSEECTTTCCEESSHHHHHHHTHH
T ss_pred CCCCEeCCCcChhhCCHHHHHHHHHH
Confidence 34569999999999999999999874
No 352
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=88.38 E-value=0.2 Score=33.73 Aligned_cols=26 Identities=31% Similarity=0.689 Sum_probs=22.8
Q ss_pred eecCCCCcccccChhhHHhhhhhcch
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.|.|+.|+|.|....-+..|+..-+.
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~ 26 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTD 26 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCC
Confidence 48999999999999999999987443
No 353
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=88.27 E-value=0.15 Score=33.12 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=23.2
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|++.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2em8_A 9 GEKPYKCVECGKGYKRRLDLDFHQRV 34 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCeECcccCchhCCHHHHHHHHHH
Confidence 35679999999999999999999875
No 354
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.12 E-value=0.2 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+-.|.|+.|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2enc_A 9 GEKPFKCEECGKGFYTNSQCYSHQRSH 35 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred CCCCcCCCCCCCcCCChHHHHHHHHHh
Confidence 345699999999999999999998753
No 355
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.98 E-value=2.1 Score=33.79 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=45.2
Q ss_pred CCeEEeeecC-------CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687 34 TSSIFLRNLA-------PTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN 98 (339)
Q Consensus 34 t~slfIk~Ip-------P~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~ 98 (339)
...|.|+-.+ ++++.++|.+++.+++....+.|. -..| ..|+|.|....++..|+..+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~r---GfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKP---GTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSS---SEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCC---CEEEEEECCHHHHHHHHHhcCC
Confidence 3455566554 679999999999999999998886 1222 3699999999888877765443
No 356
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=87.85 E-value=0.23 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.6
Q ss_pred eecCC--CCcccccChhhHHhhhhh
Q psy4687 305 KWLCP--LSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 305 K~rC~--~C~KlFk~~eFV~KHI~n 327 (339)
.|.|+ .|+|.|....-+..|++.
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 47899 999999999999999865
No 357
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=87.73 E-value=0.21 Score=39.62 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=26.9
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchHHH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAEKV 333 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v 333 (339)
+..|.|+.|+|.|....-+..|++..|++.|
T Consensus 98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~v 128 (129)
T 2wbt_A 98 EHTKVCPVCKKEFTSTDSALDHVCKKHNICV 128 (129)
T ss_dssp CCCCBCTTTCCBCSSHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHCCccC
Confidence 5569999999999999999999999887643
No 358
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.55 E-value=0.21 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ytd_A 9 GEKPYKCSECGKAFHRHTHLNEHRRI 34 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred CCcCeECCCCCCeeCChHHHHHHHHH
Confidence 34569999999999999999999865
No 359
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.48 E-value=0.23 Score=35.87 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+..|.|+.|+|.|.....+..|++.-+++
T Consensus 44 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~ 72 (77)
T 2cot_A 44 EKPYKCDECGKAFIQRSHLIGHHRVHTGS 72 (77)
T ss_dssp SCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred CcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence 45699999999999999999999865544
No 360
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=87.41 E-value=0.24 Score=35.57 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+...+..++ .+-.|.|+.|+|.|....-+..|++. |.
T Consensus 19 ~L~~H~~~Ht---~ekp~~C~~C~k~F~~~~~L~~H~~~-Ht 56 (60)
T 4gzn_C 19 GLSRHRRAHL---GYRPRSCPECGKCFRDQSEVNRHLKV-HQ 56 (60)
T ss_dssp HHHHHHHHHH---TCCCEECTTTCCEESSHHHHHHHGGG-GS
T ss_pred HHHHHHHHhC---CCcCeECCCCCCCcCCHHHHHHHhCc-cC
Confidence 3444455443 35579999999999999999999875 54
No 361
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.40 E-value=0.28 Score=37.91 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+..|.|+.|+|.|....-+.+|++..|..
T Consensus 78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence 45699999999999999999999988864
No 362
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.40 E-value=0.21 Score=38.74 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 288 AEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 288 eevek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
..+...+..+ .+..|.|..|+|.|....-+..|+...|.+
T Consensus 49 ~~L~~H~~~h----~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 49 EGLKKHMENC----KQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp HHHHHHHHHH----CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH----CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence 3455555543 456799999999999999999997777864
No 363
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=87.30 E-value=0.23 Score=35.55 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=25.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-+.
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ 42 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTG 42 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCC
Confidence 46779999999999999999999976443
No 364
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=87.24 E-value=0.31 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+.+|++.-+++
T Consensus 59 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~ 88 (90)
T 1a1h_A 59 GEKPFACDICGRKFARSDERKRHTKIHLRQ 88 (90)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred CCCCccCCCCCchhCCHHHHHHHHHHhccc
Confidence 355699999999999999999999876554
No 365
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.09 E-value=0.36 Score=37.00 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.2
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchHHHH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVE 334 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v~ 334 (339)
.+..|.|+.|+|.|....-+.+|++.-|+..-.
T Consensus 62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~ 94 (110)
T 2csh_A 62 GIKPYECNICAKRFMWRDSFHRHVTSCTKSYEA 94 (110)
T ss_dssp CCCCEECSSSCCEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeCCCCcchhcCHHHHHHHHHHccccccc
Confidence 345799999999999999999999998876543
No 366
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=87.06 E-value=0.27 Score=36.62 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=26.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+.+|++.-|++
T Consensus 61 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence 345699999999999999999999987765
No 367
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=87.04 E-value=0.24 Score=33.76 Aligned_cols=25 Identities=12% Similarity=0.522 Sum_probs=22.4
Q ss_pred eecCCCCcccccChhhHHhhhhhcc
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.|.|+.|+|.|....-+..|+..-+
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~ 26 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHT 26 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred cCcCCCCccccCCHHHHHHHHHHhC
Confidence 4899999999999999999998744
No 368
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.03 E-value=0.25 Score=35.87 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.4
Q ss_pred CeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
..|.|+.|+|.|....-+..|++.-|.+
T Consensus 46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~ 73 (86)
T 1x6h_A 46 AAFVCSKCGKTFTRRNTMARHADNCAGP 73 (86)
T ss_dssp CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred cceECCCCCChhCCHHHHHHHHHHccCC
Confidence 5699999999999999999999988765
No 369
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=86.90 E-value=0.23 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=24.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|..|+|.|....-+..|++.-+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLSHSG 37 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGSCS
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHhcCC
Confidence 45679999999999999999999876443
No 370
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=86.70 E-value=0.33 Score=34.43 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhh
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+...+..+. .+..|.|+.|+|.|....-+..|++.
T Consensus 36 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~ 71 (73)
T 1f2i_G 36 ELTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRT 71 (73)
T ss_dssp HHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred HHHHHHHhhC---CCCCeECCCCCchhCCHHHHHHHHHh
Confidence 4444444332 35569999999999999999999864
No 371
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.69 E-value=0.21 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yu8_A 9 GEKPYKCNECGKVFTQNSHLARHRRV 34 (46)
T ss_dssp CCSSEECSSSCCEESSSHHHHHHTHH
T ss_pred CCCCeECCcCCchhCCHHHHHHHHHh
Confidence 35569999999999999999999865
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=86.44 E-value=1.7 Score=34.08 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHHHH-hhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 50 EVENLC-KRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 50 ele~~c-k~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
+|.+.| ++++-...+.+..... .+---.|+|.|....++..|+..||+..+.+-.
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 445566 9999999999964332 223357999999999999999999987776633
No 373
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.37 E-value=0.34 Score=37.06 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.3
Q ss_pred cCCeecCCCCccccc-ChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFK-GPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk-~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|. ...-+..|++.-|.
T Consensus 21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~ 50 (98)
T 2gqj_A 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQK 50 (98)
T ss_dssp TTSCCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence 467899999999999 99999999977554
No 374
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.36 E-value=0.3 Score=34.52 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=24.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|+..-+
T Consensus 6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 33 (70)
T 1x5w_A 6 SGHPEKCSECSYSCSSKAALRIHERIHC 33 (70)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 4567999999999999999999998733
No 375
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=86.19 E-value=2.8 Score=33.85 Aligned_cols=55 Identities=7% Similarity=0.205 Sum_probs=45.5
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCee--EEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFL--RVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~--~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
-+++.++| +.||...+.+|+.+++.++||. |+- | =.+||.|.....+.+++..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid--D--------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--D--------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE--T--------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc--C--------CeEEEEecCHHHHHHHHHhcc
Confidence 45678888 9999999999999999999864 443 2 389999999998888877663
No 376
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=86.13 E-value=1 Score=36.55 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=46.9
Q ss_pred ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
++-+.+.++| +.||...+.+|+.+++.++||.===+.| =.+||.|.....+++++..+.
T Consensus 2 ~~~R~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 2 PLGSDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD--------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CSEEEEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET--------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 4567788999 9999999999999999998754222222 289999999998888877663
No 377
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=85.86 E-value=0.32 Score=34.70 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+.|+|.|....-+..|++.-+
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~ 38 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHT 38 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcC
Confidence 4567999999999999999999998644
No 378
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=85.77 E-value=0.28 Score=37.69 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=25.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
....|.|+.|+|.|....-+..|++.-|.+
T Consensus 25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~ 54 (85)
T 2lv2_A 25 SAECHLCPVCGESFASKGAQERHLRLLHAA 54 (85)
T ss_dssp CCTTEECTTSCCEESSHHHHHHHHHTTSCS
T ss_pred CCCCEECCCCCCCcCcHHHHhhhhhhccCC
Confidence 355699999999999999999999876654
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.67 E-value=1.9 Score=34.22 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=43.5
Q ss_pred CCeEEeeecCC----CC-C---HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 34 TSSIFLRNLAP----TI-T---KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 34 t~slfIk~IpP----~i-s---r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..++++...|. +. - +.+|...+..++-..-+-+-. .+ |||+|..+.++.+|.. ||+.++.+-.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DK-----MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SS-----EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CC-----EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 34666666652 22 2 577888888888654444432 21 9999999887777766 8888877755
Q ss_pred cc
Q psy4687 106 LG 107 (339)
Q Consensus 106 l~ 107 (339)
|.
T Consensus 78 Lk 79 (91)
T 2dnr_A 78 IT 79 (91)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 380
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=85.29 E-value=0.51 Score=34.87 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+...+..+. .+..|.|+.|+|.|....-+..|+...|+.
T Consensus 18 ~L~~H~~~H~---~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~ 57 (88)
T 1llm_C 18 HLTTHIRTHT---GEKPFACDICGRKFARSDERKRHRDIQHIL 57 (88)
T ss_dssp HHHHHHHHHH---CCCCEECTTTCCEESSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcC---CCCCccCCCCCCccCCHHHHHHHHHHhCCC
Confidence 3444444332 355799999999999999999999998863
No 381
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.15 E-value=0.42 Score=35.23 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+-.|.|..|+|.|.-...+.+|++.-+.
T Consensus 10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg 38 (66)
T 2epp_A 10 EAGILPCGLCGKVFTDANRLRQHEAQHGV 38 (66)
T ss_dssp CCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred CccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence 45679999999999999999999987443
No 382
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=84.92 E-value=0.36 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCeecCC--CCcccccChhhHHhhhhh
Q psy4687 303 TDKWLCP--LSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 303 e~K~rC~--~C~KlFk~~eFV~KHI~n 327 (339)
+-.|.|. .|+|.|.....+..|+..
T Consensus 6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~ 32 (37)
T 1va1_A 6 KKQHICHIQGCGKVYGKTSHLRAHLRW 32 (37)
T ss_dssp CCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 4569998 599999999999999875
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.87 E-value=2.5 Score=33.75 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCeEEeeecCCC-----C-C---HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687 34 TSSIFLRNLAPT-----I-T---KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC 104 (339)
Q Consensus 34 t~slfIk~IpP~-----i-s---r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~ 104 (339)
..++++..++++ . - +.+|.+.+..++-..-+-+-.- .|||+|..+..+.+|+. ||+.++.+-
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457778777643 1 1 4678888888885544443211 19999999988888876 999888775
Q ss_pred ccc
Q psy4687 105 ELG 107 (339)
Q Consensus 105 el~ 107 (339)
.+.
T Consensus 86 ~L~ 88 (95)
T 1ufw_A 86 AVK 88 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 384
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.78 E-value=0.47 Score=34.37 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=26.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+...|.+
T Consensus 12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~ 41 (86)
T 1x6h_A 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDP 41 (86)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred CCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence 355699999999999999999999887764
No 385
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.76 E-value=0.48 Score=34.10 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=24.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|..|+|.|....-+..|+..-+.
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~ 32 (78)
T 2d9h_A 4 GSSGLQCEICGFTCRQKASLNWHQRKHAE 32 (78)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred CCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence 35679999999999999999999876543
No 386
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.48 E-value=0.67 Score=35.78 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.8
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+..-+++
T Consensus 63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 92 (124)
T 2dlq_A 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGE 92 (124)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHHcCCC
Confidence 567899999999999999999999875543
No 387
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=83.33 E-value=0.57 Score=33.48 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCeecCCCCcccccChhhHHhhhhhc
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
+..|.|+.|+|.|....-+..|++.-
T Consensus 55 ~~~~~C~~C~~~f~~~~~l~~H~~~H 80 (82)
T 2kmk_A 55 EKPHKCQVCGKAFSQSSNLITHSRKH 80 (82)
T ss_dssp CCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred CCCCcCCCcchhhCChHHHHHHHHhh
Confidence 45699999999999999999998753
No 388
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=83.10 E-value=0.54 Score=28.87 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=22.3
Q ss_pred CCeecCC--CCcccccChhhHHhhhhhc
Q psy4687 303 TDKWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 303 e~K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
+-.|.|. .|+|.|....-+..|+..-
T Consensus 4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H 31 (38)
T 1bhi_A 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31 (38)
T ss_dssp CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred CcceECCCCCCCcccCCHHHHHHHHHHh
Confidence 4569998 6999999999999998753
No 389
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.00 E-value=0.52 Score=34.94 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+...+.+
T Consensus 33 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 62 (96)
T 2dmd_A 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62 (96)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHSCCC
T ss_pred CCCCEeCCCCCCccCCHHHHHHHHHHhCCC
Confidence 356799999999999999999998765543
No 390
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=82.50 E-value=0.7 Score=33.64 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+.+|++.
T Consensus 62 ~~~~~~C~~C~~~f~~~~~l~~H~~~ 87 (89)
T 2wbs_A 62 GHRPFQCQKCDRAFSRSDHLALHMKR 87 (89)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred CCCCccCCCCCcccCCHHHHHHHHHh
Confidence 35579999999999999999999864
No 391
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=82.06 E-value=0.53 Score=33.83 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.0
Q ss_pred ccCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 301 ~~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
..+..|.|+.|+|.|....-+..|+..-+
T Consensus 14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 42 (77)
T 2cot_A 14 RERRRYKCDECGKSFSHSSDLSKHRRTHT 42 (77)
T ss_dssp CCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred CCCCCEECCCCCcccCCHHHHHHHHHHcC
Confidence 35678999999999999999999997644
No 392
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=81.84 E-value=0.6 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=21.6
Q ss_pred cCCeecCCCCcccccChhhHHhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHI 325 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI 325 (339)
.+-.|.|+.|+|-|.-..-+.+|+
T Consensus 5 gekp~~C~~CgK~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTEECSCHHHHHHHH
T ss_pred CccCeECCCCCCccCCHhHccCcC
Confidence 356799999999999999999997
No 393
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=81.71 E-value=0.73 Score=34.29 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=22.9
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+.+|++.
T Consensus 72 ~~~~~~C~~C~~~f~~~~~l~~H~~~ 97 (100)
T 2ebt_A 72 GAKPFQCGVCNRSFSRSDHLALHMKR 97 (100)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred CCCCeECCCCcCccCCHHHHHHHHHH
Confidence 34569999999999999999999875
No 394
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=81.57 E-value=0.36 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|..|+|.|....-+..|++..|..
T Consensus 66 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp STGGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred CCCCccCccccchhCCHHHHHHHHHHHcCC
Confidence 455699999999999999999999877753
No 395
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=81.01 E-value=0.6 Score=33.35 Aligned_cols=30 Identities=30% Similarity=0.580 Sum_probs=25.5
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+...+++
T Consensus 26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 55 (82)
T 2kmk_A 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55 (82)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHHHHTC
T ss_pred CCCCeeCCcCChhhCCHHHHHHHHHHhcCC
Confidence 456799999999999999999999865543
No 396
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=81.01 E-value=0.59 Score=30.70 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.1
Q ss_pred cCCeecCC--CCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
.+-.|.|. .|+|.|....-+..|++.-
T Consensus 15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~~H 43 (47)
T 1ncs_A 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH 43 (47)
T ss_dssp TTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred CCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence 45679995 7999999999999998763
No 397
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=80.61 E-value=0.59 Score=35.41 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.4
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
+..|.|+.|+|.|....-+..|++.-+++
T Consensus 71 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred CCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence 44599999999999999999999766554
No 398
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.58 E-value=0.75 Score=34.06 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=16.5
Q ss_pred eecCCCCcccccChhhHHhhhhhcch
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
++.|+.|+|.|....-+..|+...|.
T Consensus 25 ~~~C~~C~k~f~~~~~L~~H~~~~H~ 50 (95)
T 2ej4_A 25 SRPKKSCDRTFSTMHELVTHVTMEHV 50 (95)
T ss_dssp SSSCCCCCCCCSSHHHHHHHHHHTTT
T ss_pred CCcccccccccCCHHHHHHHHHHhcc
Confidence 44566666666666666666665454
No 399
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.49 E-value=0.9 Score=29.59 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.1
Q ss_pred cCCeecCCC--CcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPL--SGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~--C~KlFk~~eFV~KHI~n 327 (339)
.+-.|.|+. |+|.|....-+..|++.
T Consensus 6 gekp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 345699975 99999999999999864
No 400
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=79.83 E-value=0.6 Score=38.37 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=26.5
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
+-.|.|+.|+|.|.....+..|++.-|++.
T Consensus 76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~ 105 (133)
T 2lt7_A 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQD 105 (133)
T ss_dssp CCCEEESSSCCEESSHHHHHHHHHHHTCCC
T ss_pred CccccCCCCCCCcCCHHHHHHHhHHhcCCC
Confidence 456999999999999999999999988753
No 401
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.80 E-value=0.79 Score=33.86 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+...+..+ ..+..|.|+.|+|.|....-+..|+...|++
T Consensus 22 ~l~~H~~~h---~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 61 (95)
T 2yt9_A 22 HLNRHKLSH---SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61 (95)
T ss_dssp HHHHHHHHS---CSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred HHHHHHHhc---CCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence 344444432 2456799999999999999999999876653
No 402
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=78.81 E-value=0.69 Score=33.48 Aligned_cols=30 Identities=47% Similarity=0.666 Sum_probs=24.7
Q ss_pred eecCCCCcccccChhhHHhhhhhc-chHHHH
Q psy4687 305 KWLCPLSGKKFKGPDFIRKHIFNK-HAEKVE 334 (339)
Q Consensus 305 K~rC~~C~KlFk~~eFV~KHI~nK-H~e~v~ 334 (339)
+=+|.+|+++|-..-=|+-||+.| |=++|.
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk 43 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVR 43 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHH
T ss_pred CccccccCcccccccchhhhhccHHHHHHHH
Confidence 458999999999999999999986 444443
No 403
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=78.78 E-value=0.9 Score=34.35 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.1
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+..-+.+
T Consensus 42 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 71 (106)
T 2ee8_A 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKE 71 (106)
T ss_dssp CSCCCBCSSSCCBCSCHHHHHHHGGGSCCC
T ss_pred CCCCcCCCCccchhCCHHHHHHHHHHhCCC
Confidence 345699999999999999999998775543
No 404
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=78.78 E-value=1 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
|-.|.|..|+|.|....-+..|++. |.
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~-Ht 28 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRA-HL 28 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHH-HH
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHH-hC
Confidence 3469999999999999999999865 53
No 405
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=78.45 E-value=0.66 Score=34.24 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=22.4
Q ss_pred CeecCCCCcccccChhhHHhhhhhc
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
-.|.|+.|+|.|....-+..|+..-
T Consensus 2 k~~~C~~C~k~f~~~~~L~~H~~~H 26 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLTTHIRTH 26 (88)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHc
Confidence 3589999999999999999999863
No 406
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.82 E-value=1 Score=34.72 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=23.1
Q ss_pred cCCeecCCCCcccc-cChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKF-KGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlF-k~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.| ....-+..|++.
T Consensus 31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~ 57 (96)
T 2ctd_A 31 DKGSVSCPTCQAVGRKTIEGLKKHMEN 57 (96)
T ss_dssp HTSCEECTTTCSCEESSHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCcccCHHHHHHHHHH
Confidence 45679999999999 999999999875
No 407
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=77.72 E-value=0.82 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=24.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+.|+|.|....-+..|+..-++
T Consensus 31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 59 (90)
T 1a1h_A 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTG 59 (90)
T ss_dssp CCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred CCCCccCCCCCcccCCHHHHHHHHHHcCC
Confidence 45679999999999999999999986543
No 408
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.48 E-value=0.88 Score=34.74 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+..|.|+.|+|.|....-+..|+..-|.+
T Consensus 34 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 63 (110)
T 2csh_A 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63 (110)
T ss_dssp CCCSEECTTTSCEESSSHHHHHHHTTTCCC
T ss_pred CCcCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence 345699999999999999999999875543
No 409
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.13 E-value=1.1 Score=35.56 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
+-.|.|..|+|.|....-+..|+...|.
T Consensus 48 ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht 75 (102)
T 2ghf_A 48 NSSYVCVECNFLTKRYDALSEHNLKYHP 75 (102)
T ss_dssp SCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred CCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence 3458888888888888888888544454
No 410
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=76.57 E-value=1.7 Score=33.66 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=16.7
Q ss_pred CCeecCCC--CcccccChhhHHhhhhhc
Q psy4687 303 TDKWLCPL--SGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 303 e~K~rC~~--C~KlFk~~eFV~KHI~nK 328 (339)
+..|.|+. |+|.|....-+..|+..-
T Consensus 60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h 87 (124)
T 1ubd_C 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 87 (124)
T ss_dssp CCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred CCCeeCCCCCCcCccCCHHHHHHHHHHh
Confidence 44567754 777777777777776543
No 411
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.11 E-value=1.2 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.2
Q ss_pred cCCeecCC--CCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
.+-.|.|. .|+|.|....-+..|+..-
T Consensus 9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H 37 (48)
T 2ent_A 9 GEKPFACTWPGCGWRFSRSDELSRHRRSH 37 (48)
T ss_dssp CCCCEECCSSSCCCEESSHHHHHHHHTTS
T ss_pred CCCCeECCCCCCCCccCCHHHHHHHHHHh
Confidence 35569997 8999999999999998763
No 412
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=75.78 E-value=1.4 Score=35.72 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=14.7
Q ss_pred ecCCCCcccccChhhHHhhhhh
Q psy4687 306 WLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 306 ~rC~~C~KlFk~~eFV~KHI~n 327 (339)
|.|+.|+|.|....-+..|+..
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~ 84 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRV 84 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHH
T ss_pred cCCCCcccccCCHHHHHHHHHh
Confidence 5666677777666666666664
No 413
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.67 E-value=1.1 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=22.6
Q ss_pred ccCCeecCC-CCcccccChhhHHhhhhh
Q psy4687 301 ISTDKWLCP-LSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 301 ~~e~K~rC~-~C~KlFk~~eFV~KHI~n 327 (339)
..+-.|.|+ .|+|.|....-+..|++.
T Consensus 32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~~ 59 (66)
T 2eod_A 32 CPRLPVACPNQCGVGTVAREDLPGHLKD 59 (66)
T ss_dssp CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred cCCcCccCCcccCcccccHHHHHHHHHh
Confidence 356789999 999999999899999865
No 414
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=75.24 E-value=2.5 Score=30.03 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=18.2
Q ss_pred ecCCC---CcccccChhhHHhhhhhcc
Q psy4687 306 WLCPL---SGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 306 ~rC~~---C~KlFk~~eFV~KHI~nKH 329 (339)
|.|+. |+|.|+...-+.+|++.-|
T Consensus 59 ~~C~~~~~C~~~f~~~~~l~~H~~~hh 85 (85)
T 2j7j_A 59 YPCKKDDSCSFVGKTWTLYLKHVAECH 85 (85)
T ss_dssp EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence 77877 8888888877777776654
No 415
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.12 E-value=1.2 Score=32.91 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.9
Q ss_pred ecCCCCcccccChhhHHhhhhh
Q psy4687 306 WLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 306 ~rC~~C~KlFk~~eFV~KHI~n 327 (339)
|.|+.|+|.|....-+..|++.
T Consensus 63 ~~C~~C~k~f~~~~~L~~H~~~ 84 (95)
T 2ej4_A 63 EECPREGKSFKAKYKLVNHIRV 84 (95)
T ss_dssp TTCSSTTCCCSSHHHHHHHHHH
T ss_pred cCCCCCCcccCCHHHHHHHHHh
Confidence 8999999999999999999976
No 416
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.74 E-value=1.4 Score=35.49 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=24.1
Q ss_pred cCCeecCCC--CcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCPL--SGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~~--C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+..|.|+. |+|.|....-+.+|++..|+
T Consensus 125 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg 155 (155)
T 2gli_A 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155 (155)
T ss_dssp SCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred CCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence 345699987 99999999999999988774
No 417
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=73.89 E-value=0.93 Score=37.93 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=30.6
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh-cchHHHHHhhc
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN-KHAEKVEEVKK 338 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n-KH~e~v~~v~~ 338 (339)
.+..|.|..|+|.|....-+..|.+. +|-..|..++.
T Consensus 47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 36789999999999999999999975 47777766653
No 418
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=73.84 E-value=1.5 Score=36.76 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 288 AEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 288 eevek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
..+...+..+. .+..|.|+.|+|.|....-+..|++.-|++
T Consensus 147 ~~L~~H~~~H~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~ 187 (190)
T 2i13_A 147 DNLHTHQRTHT---GEKPYKCPECGKSFSRRDALNVHQRTHTGK 187 (190)
T ss_dssp HHHHHHHHHHH---CCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred HHHHHHHHhcC---CCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence 34555555433 456799999999999999999999876655
No 419
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=73.72 E-value=1.6 Score=33.29 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=24.7
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+-.|.|+.|+|.|.....+..|+..-..+
T Consensus 22 ~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~e 51 (88)
T 1x6f_A 22 QNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51 (88)
T ss_dssp CCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCEeCCHHHHHHHHHHhCCC
Confidence 355799999999999999999998763333
No 420
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.66 E-value=1.3 Score=35.01 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=25.7
Q ss_pred ccCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687 301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 301 ~~e~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
..+..|.|+.|+|.|....-+..|++..|
T Consensus 14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H 42 (102)
T 2ghf_A 14 KVEGGYECKYCTFQTPDLNMFTFHVDSEH 42 (102)
T ss_dssp CCCSSEECSSCSCEESCHHHHHHHHHHHC
T ss_pred CCCcCcCCCCCCCccCCHHHHHHHHHhhC
Confidence 35677999999999999999999998766
No 421
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=73.40 E-value=1.2 Score=35.13 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=26.3
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchHHHHHhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVK 337 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v~~v~ 337 (339)
.++.--|-+|||.||. +.+|+...|+---++-|
T Consensus 18 ~~d~iiClecGK~fK~---LkRHL~~~hgltpeeYR 50 (87)
T 2jsp_A 18 QDDHIVCLECGGSFKS---LKRHLTTHHSMTPEEYR 50 (87)
T ss_dssp CSSCEECTBTCCEESB---HHHHHHHTTCSCHHHHH
T ss_pred CCCceEecccchhhHH---HHHHHHHccCCCHHHHH
Confidence 4678899999999994 67999998876555443
No 422
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=73.21 E-value=1.3 Score=33.87 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhccCCeecC--CCCcccccChhhHHhhhh
Q psy4687 289 EVEKFIAANTQEISTDKWLC--PLSGKKFKGPDFIRKHIF 326 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC--~~C~KlFk~~eFV~KHI~ 326 (339)
.+...+..+. .+..|.| +.|+|.|....-+.+|++
T Consensus 81 ~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~L~~H~~ 117 (119)
T 2jp9_A 81 HLKTHTRTHT---GEKPFSCRWPSCQKKFARSDELVRHHN 117 (119)
T ss_dssp HHHHHHHHHH---TCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCCeeCCCCCCccccCCHHHHHHHHh
Confidence 4444444322 3455777 667777777777777764
No 423
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.54 E-value=1.6 Score=33.45 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.3
Q ss_pred CCeecCCCCcccccChhhHHhhhhh
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
+..|.|+.|+|.|....-+..|+..
T Consensus 17 ~~~~~C~~C~k~f~~~~~L~~H~~~ 41 (115)
T 2dmi_A 17 ASKFRCKDCSAAYDTLVELTVHMNE 41 (115)
T ss_dssp CCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred CCCEECCccCchhcCHHHHHHHHHH
Confidence 4568999999999999999999876
No 424
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=70.93 E-value=1.8 Score=34.03 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.4
Q ss_pred cCCeecCCCCcccccChhhHHhhhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.+..|.|+.|+|.|....-+..|+..
T Consensus 71 ~~~~~~C~~C~k~f~~~~~l~~H~~~ 96 (129)
T 2wbt_A 71 AISQFVCPLCLMPFSSSVSLKQHIRY 96 (129)
T ss_dssp HHCSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCCeECCCCCcccCCHhHHHHHHHH
Confidence 35679999999999999999999976
No 425
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=70.93 E-value=1.8 Score=28.28 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeecCCCCcccccChhhHHhhhhhcc
Q psy4687 304 DKWLCPLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 304 ~K~rC~~C~KlFk~~eFV~KHI~nKH 329 (339)
-|--|+.|-|++..-.-+.|||+--|
T Consensus 8 ikqhcrfckkkysdvknlikhire~h 33 (37)
T 2elu_A 8 IKQHCRFCKKKYSDVKNLIKHIRDAH 33 (37)
T ss_dssp CCCEETTTTEECSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35579999999999999999999777
No 426
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.72 E-value=2.4 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=23.8
Q ss_pred cCCeecCCC--CcccccChhhHHhhhhhcc
Q psy4687 302 STDKWLCPL--SGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 302 ~e~K~rC~~--C~KlFk~~eFV~KHI~nKH 329 (339)
.+..|.|+. |+|.|....-+..|+..-+
T Consensus 35 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~ 64 (79)
T 2dlk_A 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64 (79)
T ss_dssp SCCCEECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred CCCCeECCCCCCcCccCCHHHHHHHHHHhC
Confidence 677899988 9999999999999987543
No 427
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.17 E-value=2 Score=29.93 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred CCeecCCCCcccccChhhHHhhhh
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIF 326 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~ 326 (339)
+-.|.|+.|+|.|. ..-+..|+.
T Consensus 8 ~~~~~C~~C~k~f~-~~~L~~H~~ 30 (66)
T 2eod_A 8 KRTQPCTYCTKEFV-FDTIQSHQY 30 (66)
T ss_dssp CCEEECSSSCCEEE-HHHHHHHHH
T ss_pred CCCeeccccCCccC-HHHHHHHHH
Confidence 45699999999999 999999975
No 428
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=69.94 E-value=1.5 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=16.7
Q ss_pred CCeecCCC--CcccccChhhHHhhhh
Q psy4687 303 TDKWLCPL--SGKKFKGPDFIRKHIF 326 (339)
Q Consensus 303 e~K~rC~~--C~KlFk~~eFV~KHI~ 326 (339)
+..|.|+. |+|.|....-+..|++
T Consensus 45 ~~~~~C~~~~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 45 EKPFSCSWKGCERRFARSDELSRHRR 70 (72)
T ss_dssp SCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred CCCccCCCCCCCcccCCHHHHHhHhh
Confidence 44577754 7777777777777764
No 429
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.64 E-value=1.7 Score=30.91 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=15.7
Q ss_pred CeecCCC--CcccccChhhHHhhhhhcch
Q psy4687 304 DKWLCPL--SGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 304 ~K~rC~~--C~KlFk~~eFV~KHI~nKH~ 330 (339)
..|.|.. |+|.|....-+..|+...|.
T Consensus 6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~ 34 (79)
T 2dlk_A 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI 34 (79)
T ss_dssp SSEECSSTTTCCEESSHHHHHHHHHHGGG
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHHHhC
Confidence 3455543 66666666666666655443
No 430
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=68.80 E-value=2.6 Score=31.94 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=12.5
Q ss_pred cCCeecCCCCcccccChhhHHhhh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHI 325 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI 325 (339)
-...|.|+.|+|.|....-+..|+
T Consensus 39 H~~~~~C~~C~~~f~~~~~l~~H~ 62 (107)
T 1wjp_A 39 CRNAAVCPYCSLRFFSPELKQEHE 62 (107)
T ss_dssp HHHSBCCTTTCCCBSSHHHHHHHH
T ss_pred CCCCccCCCCCCccCCHHHHHHHH
Confidence 333455555555555555555555
No 431
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.06 E-value=1.4 Score=31.18 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=30.0
Q ss_pred cCCeecCCCCcccccChhhHHhhhhhcchHHHHHh
Q psy4687 302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEV 336 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v~~v 336 (339)
+.+.|.||-|++.|+-.+=++.|++--=||.|+-.
T Consensus 9 ~~~~~~CPrCn~~f~~~~sLr~HmkycCp~~v~~~ 43 (49)
T 2e72_A 9 DGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQ 43 (49)
T ss_dssp CSSCCCCTTTCCCCSSHHHHHHHHHHHCTTTCCCC
T ss_pred cCCceeCCcccccccchHHHHhhhhhcCcchhhhh
Confidence 56899999999999999999999987777766543
No 432
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=66.22 E-value=7.2 Score=33.90 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=45.5
Q ss_pred CHHHHHHHHhhcCCeeEEEecCCCCCC----CceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 47 TKAEVENLCKRYSGFLRVAIADPQPDR----RWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 47 sr~ele~~ck~~~GF~~lsLSDP~p~k----rf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
..++|.+.|.+++....+.+..|.... +---.|||.|....++..|+..||+..+.|-.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 356788889999999999996544332 33457999999999999999999987766643
No 433
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=65.61 E-value=3.2 Score=29.07 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=22.5
Q ss_pred ccCCeecCCC--CcccccChhhHHhhhh
Q psy4687 301 ISTDKWLCPL--SGKKFKGPDFIRKHIF 326 (339)
Q Consensus 301 ~~e~K~rC~~--C~KlFk~~eFV~KHI~ 326 (339)
.....|.|.. |+|.|.....+..|+.
T Consensus 13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~ 40 (72)
T 2epa_A 13 SRIRSHICSHPGCGKTYFKSSHLKAHTR 40 (72)
T ss_dssp CCCCCEECSSTTTCCEESSHHHHHHHHH
T ss_pred cccCceeCCCCCCccccCCHHHHHHHHH
Confidence 3567899977 9999999999999985
No 434
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=65.59 E-value=2 Score=30.14 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=23.2
Q ss_pred cCCeecCC--CCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+ .|+|.|....-+..|+..-
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h 44 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDELTRHIRIH 44 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHHHHHHHHHH
T ss_pred CCCccCCcCCCCCCccCCHHHHHHHHHhh
Confidence 46679997 6999999999999998753
No 435
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=65.58 E-value=2.9 Score=30.21 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=21.5
Q ss_pred cCCeecCC--CCcccccChhhHHhhhhhc
Q psy4687 302 STDKWLCP--LSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nK 328 (339)
.+..|.|+ .|+|.|....-+..|+..-
T Consensus 32 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h 60 (89)
T 2wbs_A 32 GEKPYHCDWDGCGWKFARSDELTRHYRKH 60 (89)
T ss_dssp SSCCEECCSTTTCCEESSHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCCccCCHHHHHHHHHHc
Confidence 45678997 5999999999999998643
No 436
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=65.43 E-value=2.6 Score=32.59 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhccCCeecCC--CCcccccChhhHHhhhhhcchHH
Q psy4687 289 EVEKFIAANTQEISTDKWLCP--LSGKKFKGPDFIRKHIFNKHAEK 332 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~--~C~KlFk~~eFV~KHI~nKH~e~ 332 (339)
.+...+..+. .+..|.|+ .|+|.|....-+..|++.-++++
T Consensus 79 ~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k 121 (124)
T 1ubd_C 79 NLRTHVRIHT---GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121 (124)
T ss_dssp HHHHHHHHHH---CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred HHHHHHHHhC---CCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence 4444444332 35679996 59999999999999999866654
No 437
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=63.65 E-value=2.4 Score=30.19 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=10.1
Q ss_pred CCC--CcccccChhhHHhhhh
Q psy4687 308 CPL--SGKKFKGPDFIRKHIF 326 (339)
Q Consensus 308 C~~--C~KlFk~~eFV~KHI~ 326 (339)
|+. |+|.|....-+..|+.
T Consensus 34 C~~~~C~~~f~~~~~l~~H~~ 54 (85)
T 2j7j_A 34 CPHEGCDKRFSLPSRLKRHEK 54 (85)
T ss_dssp CCSTTCCCEESSHHHHHHHHH
T ss_pred CCCCCCcCccCCHHHHHHHHH
Confidence 544 5555555555555553
No 438
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=61.54 E-value=4.1 Score=30.97 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhh
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIF 326 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~ 326 (339)
.+...+..+. .+..|.|+.|+|.|....-+..|+.
T Consensus 53 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~ 87 (119)
T 2jp9_A 53 QLKRHQRRHT---GVKPFQCKTCQRKFSRSDHLKTHTR 87 (119)
T ss_dssp HHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCCccCCccCchhCCHHHHHHHHH
Confidence 4444444332 3567999999999999999999985
No 439
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=60.58 E-value=2.7 Score=35.17 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+...+..+. .+..|.|+.|+|.|....-+..|+..-++
T Consensus 120 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~~ 158 (190)
T 2i13_A 120 HLRAHQRTHT---GEKPYKCPECGKSFSREDNLHTHQRTHTG 158 (190)
T ss_dssp HHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC---CCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence 3444444332 35679999999999999999999876443
No 440
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=60.26 E-value=3.1 Score=33.55 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhccCCeecCCC--CcccccChhhHHhhhhhcchH
Q psy4687 289 EVEKFIAANTQEISTDKWLCPL--SGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~--C~KlFk~~eFV~KHI~nKH~e 331 (339)
.+...+..+. .+..|.|+. |+|.|....-+.+|++.-|++
T Consensus 107 ~L~~H~~~h~---~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~ 148 (155)
T 2rpc_A 107 NLKIHKRTHT---GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148 (155)
T ss_dssp HHHHHHTTTC---SSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred HHHHHHHhhC---CCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence 4444444332 345699997 999999999999999876654
No 441
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=58.72 E-value=4.6 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhh
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFN 327 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~n 327 (339)
.|..-+..++ .+-.|.|+.|+|.|....-+..|+..
T Consensus 37 ~L~~H~~~H~---~~k~~~C~~C~k~F~~~~~L~~H~~~ 72 (133)
T 2lt7_A 37 SLRRHFNIHS---WEKKYPCRYCEKVFPLAEYRTKHEIH 72 (133)
T ss_dssp HHHHHHHHHH---CCSCEECSSSSCEESSHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCCeeCCccCeecccccchhhhccc
Confidence 4555555443 34579999999999999999999864
No 442
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=58.08 E-value=4.5 Score=33.78 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=18.8
Q ss_pred ecCCC---CcccccChhhHHhhhhhcchH
Q psy4687 306 WLCPL---SGKKFKGPDFIRKHIFNKHAE 331 (339)
Q Consensus 306 ~rC~~---C~KlFk~~eFV~KHI~nKH~e 331 (339)
|.|+. |+|.|+...-+.+|+..-|+|
T Consensus 162 ~~C~~~~~C~~~f~~~~~l~~H~~~h~~e 190 (190)
T 1tf6_A 162 YPCKKDDSCSFVGKTWTLYLKHVAECHQD 190 (190)
T ss_dssp CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence 77777 888888888888887776654
No 443
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=57.61 E-value=4.9 Score=28.99 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.9
Q ss_pred ecCC--CCcccccChhhHHhhhhhcch
Q psy4687 306 WLCP--LSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 306 ~rC~--~C~KlFk~~eFV~KHI~nKH~ 330 (339)
+.|. .|+|.|..++.+.+||.+.|-
T Consensus 2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv 28 (64)
T 1zw8_A 2 LKCKWKECPESASSLFDLQRHLLKDHV 28 (64)
T ss_dssp CCCCCTTCCCCCSSHHHHHHHHHHHSC
T ss_pred CeEeeCCCCCcCCCHHHHHHHHHhhcc
Confidence 4573 699999999999999987773
No 444
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=56.43 E-value=4.8 Score=29.66 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhccCCeecCC--CCcccccChhhHHhhhhhcch
Q psy4687 288 AEVEKFIAANTQEISTDKWLCP--LSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 288 eevek~v~~~~~e~~e~K~rC~--~C~KlFk~~eFV~KHI~nKH~ 330 (339)
..+...++.+. .+..|.|+ .|+|.|....-+..|+..-+.
T Consensus 31 ~~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 72 (100)
T 2ebt_A 31 SHLKAHLRTHT---GEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72 (100)
T ss_dssp HHHHHHHHHHS---CCCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC---CCCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence 34555555432 45668996 599999999999999876544
No 445
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=56.25 E-value=5.8 Score=30.25 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=24.5
Q ss_pred cCCeecCC--CCcccccChhhHHhhhhhcch
Q psy4687 302 STDKWLCP--LSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+-.|.|+ .|+|-|.-..-+..|++.-|.
T Consensus 24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred CCCCeECCCCCcChhHcCHHHHHHHhhhhCC
Confidence 46779996 599999999999999876564
No 446
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.11 E-value=0.62 Score=32.49 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=22.1
Q ss_pred CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687 303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
+..|.|+.|+|.|....-+..|+..-++
T Consensus 37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~ 64 (73)
T 2ctu_A 37 RKTPMCEKCRKDSCQEAALNKDEGNESG 64 (73)
T ss_dssp SSSCCCHHHHHTCSCCCSSCCCSSCCCC
T ss_pred CCCCCCCCCChhhcCHHHHHHHHHhhcC
Confidence 4568899999999988888888876443
No 447
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=54.78 E-value=11 Score=27.13 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHHHH-Hhhhhhc---cCCeecCC--CCcccccChhhHHhhhhhcc
Q psy4687 288 AEVEKFI-AANTQEI---STDKWLCP--LSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 288 eevek~v-~~~~~e~---~e~K~rC~--~C~KlFk~~eFV~KHI~nKH 329 (339)
+++-..| ..++... ....|.|. .|+..|++..=+..||+.+|
T Consensus 17 ~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 17 FDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp HHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence 3455555 3555443 23479995 89999999999999999988
No 448
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=52.96 E-value=4.9 Score=32.14 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhccCCeecCCC--CcccccChhhHHhhhhhcch
Q psy4687 289 EVEKFIAANTQEISTDKWLCPL--SGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~--C~KlFk~~eFV~KHI~nKH~ 330 (339)
.+...++.+. .+..|.|+. |+|.|....-+.+|+...|.
T Consensus 84 ~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~ 124 (155)
T 2gli_A 84 NLKTHLRSHT---GEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124 (155)
T ss_dssp HHHHHHHHTT---TCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred HHHHHHHHcC---CCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence 4454554432 356799998 99999999999999977775
No 449
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=43.23 E-value=54 Score=22.10 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=42.6
Q ss_pred CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN 98 (339)
Q Consensus 34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~ 98 (339)
+.++.|..+...--...|++.+++++|...+.++=+. +...|.|+...+..++...+.+
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 3456667666665678899999999999888876222 3678999666677777766653
No 450
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=42.46 E-value=9.7 Score=26.22 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=14.6
Q ss_pred cCCeecCCCCcccccChh
Q psy4687 302 STDKWLCPLSGKKFKGPD 319 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~e 319 (339)
.+..|.|+.|+|.|...+
T Consensus 36 ~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 36 MTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp TTTEEBCSSSCCBCEECT
T ss_pred CCCCEECCCCCCccccCc
Confidence 456799999999997654
No 451
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=41.70 E-value=13 Score=30.89 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=16.7
Q ss_pred eecC--CCCcccccChhhHHhhhhhcc
Q psy4687 305 KWLC--PLSGKKFKGPDFIRKHIFNKH 329 (339)
Q Consensus 305 K~rC--~~C~KlFk~~eFV~KHI~nKH 329 (339)
.|.| +.|+|.|....-+..|+..-+
T Consensus 104 ~~~C~~~~C~k~f~~~~~L~~H~~~H~ 130 (190)
T 1tf6_A 104 VYVCHFENCGKAFKKHNQLKVHQFSHT 130 (190)
T ss_dssp CCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred eeeCCCCCCccccCCHHHHHHHHHHhC
Confidence 4677 667777777777777766533
No 452
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=40.57 E-value=30 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHhhc-------CCeeEEEecCCCCCCCceEEEEEE
Q psy4687 45 TITKAEVENLCKRY-------SGFLRVAIADPQPDRRWFRRGWVT 82 (339)
Q Consensus 45 ~isr~ele~~ck~~-------~GF~~lsLSDP~p~krf~R~GWV~ 82 (339)
-++|..|+++|..- +-|.|+.++. .+.+.-||++-|+
T Consensus 18 ~L~R~~l~~~~~~P~Fe~~V~GcFVRv~ig~-~~~~~~Yrl~qI~ 61 (137)
T 3u1u_A 18 RLSRHKLERWCHMPFFAKTVTGCFVRIGIGN-HNSKPVYRVAEIT 61 (137)
T ss_dssp BCCHHHHHHHTTSTTHHHHHTTCEEEEEEEC-----CEEEEEEEE
T ss_pred EEEHHHHHHHhcCCChhHheEEEEEEEEeCC-CCCCccEEEEEEE
Confidence 47899999999762 4499999984 4577889999886
No 453
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.45 E-value=15 Score=35.95 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccCh
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGP 318 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~ 318 (339)
+++.|++.+. ...+|+||.|+|.+.-.
T Consensus 275 Dl~sfL~~~~---~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 275 DALWFLHSQL---QIPTWQCPVCQIDIALE 301 (371)
T ss_dssp EHHHHHHHHH---HSCCCBCTTTCCBCCGG
T ss_pred CHHHHHHHhh---cCCceeCCCCCcccCHH
Confidence 4667777643 36899999999987543
No 454
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.92 E-value=15 Score=35.70 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhhccCCeecCCCCcccccCh
Q psy4687 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGP 318 (339)
Q Consensus 289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~ 318 (339)
+++.|++.+. ...+|+||.|+|.+.-.
T Consensus 241 Dl~sfL~~~~---~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 241 DAALYLQMNE---KKPTWICPVCDKKAAYE 267 (360)
T ss_dssp EHHHHHHHHH---HSCCCBCTTTCSBCCGG
T ss_pred CHHHHHHHHh---hCCCeECCCCCcccCHH
Confidence 3566777553 36799999999988643
No 455
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.87 E-value=51 Score=26.56 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCeEEeeecCCCC-----CHHHHHHHHhhcCC---eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687 34 TSSIFLRNLAPTI-----TKAEVENLCKRYSG---FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE 105 (339)
Q Consensus 34 t~slfIk~IpP~i-----sr~ele~~ck~~~G---F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e 105 (339)
.++|+|=+|++.| -++++|+++.++.. |.+| + .|- +-=|.|....++..|--.|++..+.|.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l------k--SFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------K--SFK-RVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE------T--TTT-EEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec------C--cce-EEEEEeCChHHHHHHHHHhccceecCce
Confidence 3679999999877 26899999999964 5433 2 354 4578898888777666667776655543
No 456
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.49 E-value=56 Score=26.90 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=54.0
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhc-----CCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRY-----SGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG 107 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~-----~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~ 107 (339)
.+|=|=+||-+|+.+.|-+++..+ +.+..+.|- |+ |--+-|.|.....+..+.-+|++..+.+-.|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~---pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV---SD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE---TT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe---cC---CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 355677999999999999999999 889999995 22 23789999998887777778999887765543
No 457
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=35.10 E-value=39 Score=28.67 Aligned_cols=37 Identities=19% Similarity=0.453 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHhh------c-CCeeEEEecCCCCCCCceEEEEEE
Q psy4687 45 TITKAEVENLCKR------Y-SGFLRVAIADPQPDRRWFRRGWVT 82 (339)
Q Consensus 45 ~isr~ele~~ck~------~-~GF~~lsLSDP~p~krf~R~GWV~ 82 (339)
-++|..|+++|.. + +-|.||.++ |...+.-||++.|+
T Consensus 32 rL~Rs~l~~~~~~P~Fe~~V~GcFVRV~ig-~~~~~~~YRl~qI~ 75 (153)
T 2bze_A 32 RLSRHKLERWCHMPFFAKTVTGCFVRIGIG-NHNSKPVYRVAEIT 75 (153)
T ss_dssp EECHHHHHHHSSSSSCHHHHTTCEEEEESS-TTSSSCCEEEEEEE
T ss_pred EEEHHHHHHHhcCCchhHheEEEEEEEEeC-CCCCCccEEEEEEE
Confidence 3679999999965 2 349999999 45666789999885
No 458
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=32.79 E-value=93 Score=20.31 Aligned_cols=56 Identities=7% Similarity=0.127 Sum_probs=37.8
Q ss_pred eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
.+.|..+...--...|+..+++.+|...+..+-.. +...|.|++..+..++...+.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 61 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVE 61 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHH
Confidence 45666666655567899999999999888876332 367888887666665555554
No 459
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5
Probab=32.21 E-value=23 Score=29.23 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=29.7
Q ss_pred ccCCeecCCCCcccccChhhHHhhhhhcchHHHHHh
Q psy4687 301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEV 336 (339)
Q Consensus 301 ~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v~~v 336 (339)
+++....|-.|.+.|...+-+.+|++.+|.=-+.++
T Consensus 11 ~e~~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~i 46 (121)
T 1wir_A 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSM 46 (121)
T ss_dssp CCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHH
T ss_pred CCCCceeEecCCCcccCHHHHHHHHHHhcCCCHHHH
Confidence 456778999999999999999999999997433333
No 460
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=31.78 E-value=1.1e+02 Score=20.03 Aligned_cols=57 Identities=7% Similarity=0.113 Sum_probs=41.1
Q ss_pred eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN 98 (339)
Q Consensus 36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~ 98 (339)
.+.|..+...--...|++.+++.+|...+..+-+. ....|.|++..+..++...+..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 35566666655568899999999999888887332 3677889987666666655544
No 461
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.62 E-value=14 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=16.7
Q ss_pred ccCCeecCCCCcccccChhhH
Q psy4687 301 ISTDKWLCPLSGKKFKGPDFI 321 (339)
Q Consensus 301 ~~e~K~rC~~C~KlFk~~eFV 321 (339)
..-++|.|+.|++.|-|--|+
T Consensus 41 ~atGiW~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 41 QGTGIWQCSYCDYKFTGGSYK 61 (83)
T ss_dssp EETTEEEETTTCCEEECCSSS
T ss_pred cCCCeEECCCCCCEecCCEec
Confidence 357889999999999886554
No 462
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=30.55 E-value=96 Score=19.89 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=37.1
Q ss_pred EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
+.|..+...--...|++.+++.+|...+.++-.. ....|.|+++.+..++...+.
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 59 (66)
T 1yg0_A 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALL 59 (66)
T ss_dssp ECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHH
Confidence 4445554444567899999999999988886332 256788888766555554443
No 463
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=30.42 E-value=27 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.0
Q ss_pred cCCeecCCCCcccccChhh
Q psy4687 302 STDKWLCPLSGKKFKGPDF 320 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~eF 320 (339)
....|.|+.|++.|...++
T Consensus 6 ~~~~~~C~~C~~~i~~~~~ 24 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPVWDM 24 (39)
T ss_dssp CCCEEECTTTCCEEEGGGH
T ss_pred cCCCcccccccCcCCcccc
Confidence 4678999999999998765
No 464
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.84 E-value=53 Score=26.55 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHhHHhccCCCCCCChHHHHhhcCcc--cHHH-HHHH---HHhhhhh----ccCCeecCCCCcccc
Q psy4687 257 STFQNKMSSLVSSPQEPTPEELDQLGAKK--TDAE-VEKF---IAANTQE----ISTDKWLCPLSGKKF 315 (339)
Q Consensus 257 ~~~e~k~~~~l~~~~~~~~~d~~klG~k~--~eee-vek~---v~~~~~e----~~e~K~rC~~C~KlF 315 (339)
.+..++|..+|. ..+++..++.+.-+.. .+++ |..- |...... .---.|+|.-||-.|
T Consensus 10 ~T~Re~Ii~lL~-~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 10 ATRREKIIELLL-EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKPAQCRKCGFVF 77 (105)
T ss_dssp HHHHHHHHHHTT-TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBC
T ss_pred ccHHHHHHHHHH-cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEECcChhhCcCee
Confidence 356778888887 4677777777654442 2333 3333 2332222 223468999999999
No 465
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=27.92 E-value=8.8 Score=33.33 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=16.7
Q ss_pred hccCCeecCCCCcccccChhh
Q psy4687 300 EISTDKWLCPLSGKKFKGPDF 320 (339)
Q Consensus 300 e~~e~K~rC~~C~KlFk~~eF 320 (339)
+.+.+.|+|+-|++-|..++|
T Consensus 57 ~~~~g~~~CekC~~~~~~~~~ 77 (181)
T 1l1o_C 57 DQQNGLYRCEKCDTEFPNFKY 77 (181)
T ss_dssp EETTTEEEETTTTEEESSCCE
T ss_pred cCCCCeEECCCCCCcCCCceE
Confidence 346789999999998877654
No 466
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=27.90 E-value=43 Score=32.97 Aligned_cols=76 Identities=9% Similarity=0.226 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhHHhccCCCCCCChHHHHhhcCcccHHHHHH-HHHhhhhhccCCeecCCCCcccccChhhHHhhhhhc
Q psy4687 250 QEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEK-FIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328 (339)
Q Consensus 250 ~e~~~W~~~~e~k~~~~l~~~~~~~~~d~~klG~k~~eeevek-~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nK 328 (339)
.+-..++..+-+.+..|+....+|.+.+ ++- ..++.+.++ +...... ......-|.-|+|+|+...--..|+.-|
T Consensus 240 ~~Y~~YL~~L~~YL~sF~~Rt~PL~dld--~~~-~~~~~eFE~~~w~~~~~-~~~~~l~C~~c~K~Fs~~~v~~~hL~GK 315 (402)
T 4dgw_A 240 DRYMAFLLKLSKYVETFFFKSYALLDAA--AVE-NLIKSDFEHSYCRGSLR-SEAKGIYCPFCSRWFKTSSVFESHLVGK 315 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCHH--HHH-HHHHHHHHHTGGGTCCE-ETTTEECBTTTTBCBSSHHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHH--HHH-HHHHHHHHHHHhhcCCc-CCCcCeeehhhhhhhccccccHHHhccc
Confidence 4566788888888888887666665433 222 234445554 3332222 2345667999999999988887777654
Q ss_pred c
Q psy4687 329 H 329 (339)
Q Consensus 329 H 329 (339)
+
T Consensus 316 k 316 (402)
T 4dgw_A 316 I 316 (402)
T ss_dssp H
T ss_pred c
Confidence 3
No 467
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.52 E-value=91 Score=21.24 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=41.8
Q ss_pred CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCc-ccHHHHHHhhcc
Q psy4687 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD-VDIKEICWNLNN 98 (339)
Q Consensus 35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~-~~~~~~~~~L~~ 98 (339)
.++.|..+...=-...|++.+++++|...+.++=.. +..-|.|+++ .+..++...|.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 456677776666678899999999999887775221 3677899876 477777666653
No 468
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.26 E-value=17 Score=29.98 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=17.6
Q ss_pred hccCCeecCCCCcccccChhhH
Q psy4687 300 EISTDKWLCPLSGKKFKGPDFI 321 (339)
Q Consensus 300 e~~e~K~rC~~C~KlFk~~eFV 321 (339)
...-+.|.|+-|+|.|-|--|+
T Consensus 73 R~avGIW~C~~Cgk~fAGGAy~ 94 (116)
T 3cc2_Z 73 RQGTGIWQCSYCDYKFTGGSYK 94 (116)
T ss_dssp EEETTEEEETTTCCEEECCSSS
T ss_pred ecCceeEECCCCCCEEECCCcc
Confidence 3457889999999999887654
No 469
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.26 E-value=18 Score=30.56 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.3
Q ss_pred hhccCCeecCCCCcccccCh
Q psy4687 299 QEISTDKWLCPLSGKKFKGP 318 (339)
Q Consensus 299 ~e~~e~K~rC~~C~KlFk~~ 318 (339)
.+.-.+.|+|..|++.|...
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~~ 145 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFSTL 145 (165)
T ss_dssp SSCCCCCEEESSSCCEESSC
T ss_pred cccccEEEECCCCCCcccCC
Confidence 34568899999999999854
No 470
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=26.58 E-value=19 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred CCCcccccChhhHHhhhhhcch
Q psy4687 309 PLSGKKFKGPDFIRKHIFNKHA 330 (339)
Q Consensus 309 ~~C~KlFk~~eFV~KHI~nKH~ 330 (339)
|.|++.|....-..||+..-|.
T Consensus 18 PGCe~~~ed~~~FlkHL~~eH~ 39 (93)
T 4i1l_A 18 PGCEKVFEEPEEFLKHCQADHL 39 (93)
T ss_dssp CCSTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHhhcccC
Confidence 8999999999999999998885
No 471
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.40 E-value=66 Score=24.07 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhccCCeecCCC--Ccccc-cChhhHHhhhhhcchHHH
Q psy4687 290 VEKFIAANTQEISTDKWLCPL--SGKKF-KGPDFIRKHIFNKHAEKV 333 (339)
Q Consensus 290 vek~v~~~~~e~~e~K~rC~~--C~KlF-k~~eFV~KHI~nKH~e~v 333 (339)
+..|++..+.+......+||. |...| -.++.|++.+...--+++
T Consensus 35 l~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 35 LKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp HHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 566777665442235689998 99986 556777776654333333
No 472
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=26.26 E-value=1.4e+02 Score=29.94 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=43.7
Q ss_pred CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687 32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN 97 (339)
Q Consensus 32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~ 97 (339)
.+.+.+++. .|+.++..+|.+.++.+++|.=--|+| -.+||.|.....+.+++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd--------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD--------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS--------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC--------CeEEEEECCHHHHHHHHHHHH
Confidence 355666665 999999999999999998764433343 369999999988888777664
No 473
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.64 E-value=1.8e+02 Score=23.38 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=37.8
Q ss_pred CCCeEEeeecCCCCCHHHHHHHHhh---cCC--eeEEEecCCCCCCCceEEEEEEecCcccHHHHH
Q psy4687 33 RTSSIFLRNLAPTITKAEVENLCKR---YSG--FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93 (339)
Q Consensus 33 ~t~slfIk~IpP~isr~ele~~ck~---~~G--F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~ 93 (339)
...+|.+.+|||.++.+.|+=.+.. .+| ...+-.- | ..|-|+|.....+..++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-~-------~~AvItF~d~~va~rVL 64 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-G-------CGGVLTFREPADAERVL 64 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-T-------TEEEEEESSHHHHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-C-------CcEEEEEcChHHHHHHh
Confidence 3468999999999999988886555 243 4444331 2 58999998887666554
No 474
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=22.30 E-value=1.2e+02 Score=27.96 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCCCeEEeeecCCCCCH--HHHHHHHhhcCCeeEEEecCCC-CCCCceEEEEEEecCcccHHHHHHh
Q psy4687 32 HRTSSIFLRNLAPTITK--AEVENLCKRYSGFLRVAIADPQ-PDRRWFRRGWVTFRRDVDIKEICWN 95 (339)
Q Consensus 32 h~t~slfIk~IpP~isr--~ele~~ck~~~GF~~lsLSDP~-p~krf~R~GWV~f~~~~~~~~~~~~ 95 (339)
+.+..++|-.+--+..| ++|..++++++| +|+++- ..--|.|.|.|.|.++.+..+++..
T Consensus 95 PgGvaviVe~lTDN~nRT~~~vR~~f~K~gG----~lg~~GsV~~~F~~kG~i~~~~~~~~d~~~e~ 157 (247)
T 4f3q_A 95 PSGVAVMVDCLTDNKNRTVAEVRHAFSKCDG----NLGTEGSVAYLFKQRGLITFPPNSDEEKIMEI 157 (247)
T ss_dssp GGGCEEEEEEEESCHHHHHHHHHHHHHHTTC----EECCTTSSGGGEEEEEEEEECTTCCHHHHHHH
T ss_pred CCCeEEEEEEeCCCHhHHHHHHHHHHHhcCc----eECCCCceeEEEeeeEEEEECCCCCHHHHHHH
Confidence 56688999998888766 689999999999 566653 2337999999999987777766643
No 475
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.16 E-value=34 Score=24.35 Aligned_cols=16 Identities=44% Similarity=0.987 Sum_probs=12.4
Q ss_pred cCCeecCCCCcccccCh
Q psy4687 302 STDKWLCPLSGKKFKGP 318 (339)
Q Consensus 302 ~e~K~rC~~C~KlFk~~ 318 (339)
.++.|.|+.|. +|..|
T Consensus 8 ~eD~WkC~~C~-k~N~P 23 (53)
T 2cr8_A 8 SEDEWQCTECK-KFNSP 23 (53)
T ss_dssp CSCCEECSSSC-CEECS
T ss_pred Ccceeeccccc-ccCCC
Confidence 47899999998 55544
Done!